ID:

dsi_5871

 Coordinate:

3l:195187-195336 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.0 -13.7 -13.7 -13.5

Flybase annnotation

three_prime_UTR [3l_195122_195979_+]; exon [3l_194470_195979_+]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
CGTATGGTGCGCACTTTATGTGTATGCACGGCTGACACACGCATCTATATAAACAAAATGGCGTCAGGATGGGAAGAACAGTTTGGTTTTCAGCTGCCCGTTCGAATCAAATCGTATACCATTGTTCAAATACGTAGCTTTAGCCCTATTTGTCTTCTGTTAAAATAGTTTTATTACGACAACCAATTTCTCATTTGCAGTCGCAAACATGTGCAAGGCTGTTGTAGATTGTAAAGAAAGAATGAAGGAT
**************************************************************...((.................(((....((((((..(((.(((.(((...........)))))).)))..))))))...)))))******************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
.................................................................................................................................ATACGTAGCTTTAGCCCT....................................................................................................... 18 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................AATACGTAGCTTTAGCCCT....................................................................................................... 19 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GTCGCAAACATGTGCAAGGCTGTT........................... 24 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................GTCAGGATGGGAAGAACAGTTT...................................................................................................................................................................... 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................AAATGGCGTCAGGATGGGAAGAAC........................................................................................................................................................................... 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GCAAACATGTGCAAGGCTGTT........................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CGCAAACATGTGCAAGGCTGTTGTA........................ 25 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGCAAGGCTGTTGTAGATTGTAAAGA............. 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................ATTTGTCTTCTGTTAAAAT.................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TAGATTGTAAAGAAAGAATGAAGGAT 26 0 1 2.00 2 0 0 0 0 0 0 1 1 0 0 0 0 0
.................................................................................................................................ATACGTAGCTTTAGCCCTATT.................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 1 1
...................................................................................................................................................................................................TGAAGTCGCAAACATGTGCAAGGCTGTT........................... 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CATGTGCAAGGCTGTTGTAGATTGTA................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ATGTGCAAGGCTGTTGTA........................ 18 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................GTTTGGTTTTCAGCTGCCCGT..................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TGTAGATTGTAAAGAAAGAATGAAGGA. 27 0 1 2.00 2 0 0 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................CGCAAACATGTGCAAGGCTGTT........................... 22 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TGTGCAAGGCTGTTGTAGATTGTA................. 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AGGCTGTTGTAGATTGTAAAGAAAGA......... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................ATGGCGTCAGGATGGGAAGAA............................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GTCGCAAACATGTGCAAGGCTG............................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................TAAACAAAATGGCGTCAGGATG................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................TCAAATACGTAGCTTTAGCCCT....................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TCATTTGCAGTCGCAAACATGTGCA................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................TGCAAGGCTGTTGTAGATTGT.................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................AAAATGGCGTCAGGATGGGAA............................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................GCGTCAGGATGGGAAGAAC........................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GCAAGGCTGTTGTAGATTGTA................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TCATTTGCAGTCGCAAACATGTGCAAGGC............................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TTGTAAAGAAAGAATGAAGGA. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TGTAGATTGTAAAGAAAGAATGAAGG.. 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................GCAAGGCTGTTGTAGATT.................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TGTAGATTGTAAAGAAAGAATGAAGGAT 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................GTAGATTGTAAAGAAAGAAT....... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TTTATTACGACAACCAATTT............................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CATGTGCAAGGCTGTTGT......................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AAGGCTGTTGTAGATTGTAAAGA............. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................AAATGGCGTCAGGATGGGAAG.............................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GTCGCAAACATGTGCAAGGCTGT............................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGCAGTCGCAAACATGTGCAAGGC............................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................AACAAAATGGCGTCAGGATGGGAAGAAC........................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AAGGCTGTTGTAGATTGTAAAG.............. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TAGCCCTATTTGTCTTCTG........................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................TCATTTGCAGTCGCAAACATGTGCAA.................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................CTCATTTGCAGTCGCAAACAT........................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
........................................................AATGGCGTCAGGATGGGAAG.............................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TGTTGTAGATTGTAAAGAAAGAATGA..... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................AGGCTGTTGTAGATTGTAAAGAAA........... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................GGCTGTTGTAGATTGTAAAGAAAG.......... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GTGCAAGGCTGTTGTAGATTGTA................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TGTGCAAGGCTGTTGTAGATT.................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................AATGGCGTCAGGATGGGAAGAACA.......................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GGCTGTTGTAGATTGTAA................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................GCAAGGCTGTTGTAGATTGT.................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................AACAAAATGGCGTCAGGATGGGAAG.............................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................TCAAATACGTAGCTTTAGCCCC....................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................AATGGCGTCAGGATGGGAAGA............................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AGGCTGTTGTAGATTGTAAA............... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGTCGCAAACATGTGCAAGGCTGTTGTA........................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TCGCAAACATGTGCAAGGCTGTTGTA........................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGCAAGGCTGTTGTAGATTGTA................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................GGACGGGAAGAACAGT........................................................................................................................................................................ 16 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TGTCCAAGGCTGTTCTAGATTT................... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................CGGTGGTAGATTGTAAAAA............. 19 3 20 0.15 3 0 0 0 0 0 0 3 0 0 0 0 0 0
..................................................................GGATGCGAAGAAGTGTTTGG.................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................CTCTTAGTGTTCTGTTAAAA..................................................................................... 20 3 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................TGCGTTGTCAGCTGCCCGTT.................................................................................................................................................... 20 3 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................ATCAAATCGTACCCCA................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTATAGATTGTAAA............... 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AAATTGTAAAGAAAGA......... 16 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

GCATACCACGCGTGAAATACACATACGTGCCGACTGTGTGCGTAGATATATTTGTTTTACCGCAGTCCTACCCTTCTTGTCAAACCAAAAGTCGACGGGCAAGCTTAGTTTAGCATATGGTAACAAGTTTATGCATCGAAATCGGGATAAACAGAAGACAATTTTATCAAAATAATGCTGTTGGTTAAAGAGTAAACGTCAGCGTTTGTACACGTTCCGACAACATCTAACATTTCTTTCTTACTTCCTA
*******************************************************************************************************...((.................(((....((((((..(((.(((.(((...........)))))).)))..))))))...)))))************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 M023
head
 SRR902008
ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
...........................................................................................TCGACGGGCAAGCTTAGTTTA.......................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..................ACACATACGTGCCGACTGTGT................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................AAAATAATGCTGTTGGTT................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................ATCGGGATAAACAGAAGACAAT........................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................CAAACCAAAAGTCGACGGGCA..................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................GTAGACGTCAGCGTTTGTAC....................................... 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................TTACCGCAGTCCTACCCTTCT............................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................TCGGCGGGCGAGCTTAGTTTA.......................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................ATAATGCTGTTGGTTAAAGAGT......................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................CGACGGGCAAGCTTAGTT............................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CAGCGTTTGTACACGTTCC................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................ATGCTGTTGGTTAAAGAGTAA....................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................GTAACAAGTTTAGGCATCGA............................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................CGTCGACGGGCAAGCTTAGTT............................................................................................................................................ 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................GTCGACGGGCAAGCTTAGTTT........................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................AGTCCTACCCTTCTTGTC......................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................CAAGCTTAGTTTAGCATATG................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................ATGCTGTTGGTTAAAGAGTGA....................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................GTTGGTTAGAGGGTAAACGTC.................................................. 21 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................TTACTTTAGCATATCGTAAC.............................................................................................................................. 20 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................TAAAATAATGCTGTTGGGTAG.............................................................. 21 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................TGTAGGTTAAAGAGTA........................................................ 16 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GTCAGCGTTTGTTCAAGGTC................................. 20 3 12 0.08 1 0 1 0 0 0 0 0 0 0 0
..........................GTGCCGATGGTGTGCG................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0
................................................................................................GGGCAAGGTAAGTTCAGCA....................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:195137-195386 + dsi_5871 CGTATGGT---G-----CGC--------------------AC----TTTATGTGTATGCACGGCTGACACACGC--ATCTATATAAACAAAATGGCGTCAGGATGGG-AAGAACA--------------GTTTGGTTTT-----CAGCT------G------------CCCGTTCGAATCAAATCGTATAC---CATTGTTCAAATACGTAGCT-TTAGCCCTATTTGT-CT-TCTGTTAAAATAGTTTTATTACGACAA--CC--AATTTCTCATTTGCAGTCGCAA-ACATGTGCAAGGCTGTTG--------TAGATTGTAAAGAAAG--AATGAAG--G-AT
droSec2 scaffold_2:252573-252817 + CGTATGGT---G-----CGC--------------------AC----TTTATGTGTATGCACGGCTGACACACGC--ATCTATATAAACAAAATGGCGTCAGGATGGG-AAGAACA--------------GTTTGGTTTTCCAAACTGTT------G------------TTTGTTCAA----------ATAC---CATTGTTCAAATACGTAGCT-TTAGCCATATTTGT-CT-TCTGTTAAAATAGTTTTATTACGACAA--CC--CATTTCTCATTTGCAGTCGCAA-ACATGTGCAAGGCTGTTG--------TAGATTGTAAAGAAAG--AATGAAG--G-AT
dm3 chr3L:224773-225022 + CGTATGGT---G-----CGT--------------------AC----TTTATGTGTATGCGTGGCTGACACACAC--ATCTATATAAACAAAATGGCGTCAGGATGGA-AGGAACC--------------GTTTAGTTTT-----CAGCT------G------------CCCGTTCGAATCAAACCGTATAC---CATTGTTCAAATACGTAGCT-TTAGCCCTATTTGT-CT-TCTGTTAAAATAGTTTTATTACGACAA--CC--AATTTCTCATTTGCAGTCGCAA-ACATGTGCAAGGCTGTTG--------TAGATTGTAAAGAAAG--AATGAAG--G-AT
droEre2 scaffold_4784:212978-213230 + CGTATGGA---C-----CGC--------------------AC----TATATGTGTATACACGGCTGACACATACCTATCCATATACACAAAATGGCGTCAGGATGGTGGAGAACC--------------GTTTGGTTTT-----CAGCT------G------------CTCGCTCGAATCAAACCATATAC---CTTTGTTCAAATACGTAGCT-TTAGCCATATTTGT-CT-TCTGTTAAAATAGTTTTATTACGACAA--CC--AATTTCTCATTTGCAGTCGCAA-ACATGTGCAAGGCTGTTA--------TAGATTGTAAAGAAAG--AATGAAG--G-AT
droYak3 3L:203145-203396 + CGTATGGA---C-----CAC--------------------AC----TATATGTGTATTCACGGCTGACACATACCCATCCATATATACAAAATGGCGTCAGGATGGG-GAGAACC--------------GTTCGGTTTT-----CAGCT------G------------CTCGCTCGAATCGGAGCGTGTAC---CTATGTTCAAATACGTAGCT-TTAGCCCTACCTGT-CT-TCTGTTAAAATAGTTTTATTACGACAA--CC--AATTTCTCATTTGCAGTCGCAA-ACATGTGCAAGGCTGTTG--------TAGATTGTAAAGAAAG--AATGAAC--G-AT
droEug1 scf7180000409184:113486-113683 - TGTATAGT---G---TTCAC--------------------GC----TGTGTCTGTATGCGTGACTGACACATGC------------TCAAAATGGTGGCAGGAAGAAAAAAGACT--------------A--GAGTTTT-----C------------------------------GAATCGAATCATTTAC---CTT--------TATGTAGCA-T----------TGA-TC-TTTGTTAAACTAGTTTTATCACGACAA--CC--AATTTCTCATTTGCAGTCGCAA--------------TATTA--------TAGATTGTAATGAAAA--AGTGAAG--G-AT
droBia1 scf7180000300910:122835-123057 - TGTATAGT---G---C-CAG-TCTGA---GCG--------CG----TGTGTGTGCGTGCGTGGCATGCAGACGC--A--------CTCAAAATGGTGG-AGAATGGCTGAATACA--------------G-TTGCTTTT-----CAGAC------GAAG--AAC--------------------CGATTTC---C------------TGTAGCT-TTAGTTTT-TTAAA-AA-CCTGTTAAACTAGTGTTATTATGACAA--CC--AATTTCTCATTTGCAGTCGCAA-ACATGTGCAAGGCTGTTA--------TAGATTGTAATGAATG--AGTGAA-------
droTak1 scf7180000413899:13369-13588 - TACA--GT---GGTGC-C-C--CTAC---GCG--------AG----TGTGTGTGCATACAT-----------ACA----CGCGT-GACAAAATGGTGGCAGGAAGAG--AAAACC--------------GA--GAAAAT--------CG------GTTG--AAA-ACG----------------CGTTTCC---CAT------------TAGCT-TTAGCCCT-TGTGA-AC-CCTGTTAAACTAGTTTTATTACGACAA--CCAAAATTTCTCATTTGCAGTCGCAA-ACATGTGCAAGGCTGTTG--------TAGATTGTAATGAAAG--TGTGAAG--G-AT
droEle1 scf7180000491249:129626-129847 - TATATGAT---G-----------------------------C----TGTGTGTGTATACGTGACTGACACATACG----CACATGCACAAAATGGTGGCACAAAGAGCGAAAACT--------------GTTTGATTTT-----CAGCT------GTCG--TAA--------------------CATTTCC---CTT--------TACGTCGCC-CTAGCTTTATTTAA-TC-ATTGTTAAACTAGTTTTATTACGACAA--CC--CATTTCTCATTTGCAGTCGCAA-ACGTGTGCAAGGCTGTTA--------TAGATTGTAATAAAAG--A-----A--G-AT
droRho1 scf7180000762853:16338-16563 - TATATAGT---G-----TAT--------------------GTGCCGTTTGGGTGTATACGTGAATGACACATACG----CACATGCACAAAATGGTGGCAGGAAGAGAGAAAACT--------------GTT----TTT-----CAGTT------GTCG--AAA--------------------TATTTCC---CTT--------TACGTCGCC-CTAGCTTTATTTGA-TC-ATTGTTAAACTAGTTTTATTACGACAA--CC--CATTTCTCATTTGCAGTCGCAA-ACATGTGCAAGGCTGTTA--------TAGATTATAATGAAAG--A-----A--G-AT
droFic1 scf7180000454105:167877-168111 - CATATGGT---G-----TTC--------------------GC----TTTGTGTGTATACGTGACTAACACACAC--AGAAATATTTACAAAATGGTGGCAGGAAAAGAAAACACT--------------ATTCGATTTT-----CAGCT------GTCG--AGT--------------------CATTTAT---TCT--------TGCGTCGCA-ATAGCTTAAAATTA-TC-ATTGTTAAACTAGTTTTATTACGACAA--CC--AATTTCTCATTTGCAGTCGCAA-ACATGAACAAGGCTGTTA--------TAGATTGTAAAAAAAAAGAGTGAAG--G-CT
droKik1 scf7180000302510:917377-917561 + TATATGGT---G------GT--------------------GC----TGTGTGTGTATACGTGACTGTCGTGTGCACAT---------------------------------------------------------------------CT------GTCG--AAA--------------------CATTTCC---CTT--------TTCGTCGCAGTTAGATTTATTTGT-TC-ATTGTTAAACTAGTTTTATTACGACAA--CC--AATTTCTCATTTGCAGTCGCAA-ACATGTACAAGGCTGTTA--------TAGATTGTAATGAAAG--AGTGAAG--G-AT
droAna3 scaffold_13337:2314925-2315018 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGT-TT-GTTGTTAAATTAGTTTTATTACGACAA--CC---ATTTCTCATTTGCAGTCGCAA-ACAT----------GTTA--------TAGATTGTAATGAAAAAGAGAGAAA--G-AT
droBip1 scf7180000396390:162314-162408 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGT-TT-GTTGTTAAATTAGTTTTATTACGACAA--CC---ATTTCTCATTTGCAGTCGCAA-ACAT----------GTTA--------TAGATTGTAATGAAGAAGAGAGAAAGAGGA-
dp5 XR_group8:1434126-1434335 - TATA--GTCGGC-----CAT--------------------GT----TTTGTGTGTATACATGA---------------------------AATGG-------AAGAG-GAGAACA-------GCACCATGTTCGAGATT-----CATCT------GTCG--AAA--------------------TATTTTT---TCC--------TCTGTCGCT-TTAGATATATTTGT-TCATTTGTTAAATTAGTTTTATTACGACAA--CCC-AATTTCTCATTTGCAGTCGCAA-TCATGTGCAAGGCTGTTA--------TAGATTGTAATGAAAT--AATGAAG--G-AT
droPer2 scaffold_32:41246-41455 + TATA--GTCGGC-----CAT--------------------GT----TTTGTGTGTATACATGA---------------------------AATGG-------AAGAG-GAGAACA-------GCACCATGTTCGAGATT-----CATCT------GTCG--AAA--------------------TATTTTT---TCC--------TCTGTCGCT-TTAGATATATTTGT-TCATTTGTTAAATTAGTTTTATTACGACAA--CCC-AATTTCTCATTTGCAGTCGCAA-TCATGTGCAAGGCTGTTA--------TAGATTGTAATGAAAT--AATGAAG--G-AT
droWil2 scf2_1100000004762:133180-133420 + TATATGCT---G---C-T-C---TGATACACAGGCACTATGT----GATATGTGTGTGTGAGA------AAGG-------------AAGAAGTGACAGCAGAAAGAA-AAAGAGAGAAGCAAACACTGTATTTAAGTTT-----CAGCTAAAT--GACG--AAA--------------------TATTTTC-ACATT--------TTTAATATT-TTTGTTGTACATATATT-TTTGTTAAATTAGTTTTATTACGAAAAAACC--CATTTCTCATTTGCAGTCGCAA-ACA-----------------------TAGATTATAAAAGAAAAATGTGAAG--G-A-
droVir3 scaffold_12963:12811344-12811530 + CCTATAGC---A-----CTT-------------------GGG----TATT-G-------G-------------------------------------------------AGAAGT------------GTGTTTAAGCTT-----AAAAT------GTCATGAACAACT----------------TG-TTTT-TCATT--------------TCT-TT-----GATTTGA-TAATTTGTTAAATTAGTTTTATTACGAAAG---A--AATTTCTCATTTGCAGTCGCAAAACGTGTGCAAACCTGTTATACATACATAGATTGTAATGAAAA-ATGTGAAG--G-CT
droMoj3 scaffold_6500:7249935-7250128 - CATATATA---C-----TTG--------------------GA----TATATGTACATAAGAGA---------------------------AATG----------------------------------TGTTTTAGCTC-----AAAAA---TTCGTCATGCTTACCT----------------TG-TTTATTAATT--------------TCT-CT-----GAT---A-TA-TTTGTTAAATTAGTTTTATTACGAAAG---A--AATTTCTCATTTGCAGTTGCAATACGCGTGCAAACCTGTTATACATACATAGATTGTAATGAAAATATGTGAA---G-GC
droGri2 scaffold_15074:2354927-2355069 - CGTATTTT---G------ACA-CTT--------------CAA----TATTTGAG----C--------------------------------------------------ATAACT--------------GTTTCTTTCT-----CATTT------C------------CTAT-----------------------------------------T-TT-----GATTTG-----TTTGTTAAATTAGTTTTATTACG-CAA--GA--AATTTCTCATTTGCAGTCGCAAAACGT------------------------AATTGTAAAGAAAA-ATGTGAAG-AG-GC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGTATGGT---G-----CGC--------------------AC----TTTATGTGTATGCACGGCTGACACACGC--ATCTATATAAACAAAATGGCGTCAGGATGGG-AAGAACA--------------GTTTGGTTTT-----CAGCT------G------------CCCGTTCGAATCAAATCGTATAC---CATTGTTCAAATACGTAGCT-TTAGCCCTATTTGT-CT-TCTGTTAAAATAGTTTTATTACGACAA--CC--AATTTCTCATTTGCAGTCGCAA-ACATGTGCAAGGCTGTTG--------TAGATTGTAAAGAAAG--AATGAAG--G-ATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................ATACGTAGCT-TTAGCCCT...........................................................................................................................1815.00500500000000000000
...........................................................................................................................................................................................................AATACGTAGCT-TTAGCCCT...........................................................................................................................1913.00301200000000000000
.........................................................................................................................................................................................................................................................................................GTCGCAA-ACATGTGCAAGGCTGTT........................................2413.00300300000000000000
................................................................................................GTCAGGATGGG-AAGAACA--------------GTTT.....................................................................................................................................................................................................................2213.00300300000000000000
.........................................................................................AAATGGCGTCAGGATGGG-AAGAAC........................................................................................................................................................................................................................................2412.00202000000000000000
............................................................................................................................................................................................................................................................................................GCAA-ACATGTGCAAGGCTGTT........................................2112.00200200000000000000
...........................................................................................................................................................................................................................................................................................CGCAA-ACATGTGCAAGGCTGTTG--------TA.............................2512.00201100000000000000
......................................................................................................................................................................................................................................................................................................TGCAAGGCTGTTG--------TAGATTGTAAAGA..................2612.00200000002000000000
...............................................................................................................................................................................................................................ATTTGT-CT-TCTGTTAAAAT......................................................................................................1912.00200200000000000000
...........................................................................................................................................................................................................................................................................................................................TAGATTGTAAAGAAAG--AATGAAG--G-AT2612.00200000010000010000
............................................................................................................................................................................................................ATACGTAGCT-TTAGCCCTATT........................................................................................................................2112.00200000000100100000
..................................................................................................................................................................................................................................................................................................CATGTGCAAGGCTGTTG--------TAGATTGTA......................2612.00200200000000000000
...................................................................................................................................................................................................................................................................................................ATGTGCAAGGCTGTTG--------TA.............................1812.00211000000000000000
.................................................................................................................................GTTTGGTTTT-----CAGCT------G------------CCCGT.............................................................................................................................................................................2112.00200000000002000000
.................................................................................................................................................................................................................................................................................................................TG--------TAGATTGTAAAGAAAG--AATGAAG--G-A.2712.00200000001000010000
...........................................................................................................................................................................................................................................................................................CGCAA-ACATGTGCAAGGCTGTT........................................2212.00201100000000000000
....................................................................................................................................................................................................................................................................................................TGTGCAAGGCTGTTG--------TAGATTGTA......................2412.00200200000000000000
..........................................................................................................................................................................................................................................................................................................AGGCTGTTG--------TAGATTGTAAAGAAAG--A............2611.00101000000000000000
...........................................................................................ATGGCGTCAGGATGGG-AAGAA.........................................................................................................................................................................................................................................2111.00110000000000000000
.........................................................................................................................................................................................................................................................................................GTCGCAA-ACATGTGCAAGGCTG..........................................2211.00100100000000000000
...................................................................................TAAACAAAATGGCGTCAGGATG.................................................................................................................................................................................................................................................2211.00110000000000000000
........................................................................................................................................................................................................TCAAATACGTAGCT-TTAGCCCT...........................................................................................................................2211.00100100000000000000
................................................................................................................................................................................................................................................................................TCATTTGCAGTCGCAA-ACATGTGCA................................................2511.00100000010000000000
......................................................................................................................................................................................................................................................................................................TGCAAGGCTGTTG--------TAGATTGT.......................2111.00100000000000001000
........................................................................................AAAATGGCGTCAGGATGGG-AA............................................................................................................................................................................................................................................2111.00100100000000000000
..............................................................................................GCGTCAGGATGGG-AAGAAC........................................................................................................................................................................................................................................1911.00100010000000000000
.......................................................................................................................................................................................................................................................................................................GCAAGGCTGTTG--------TAGATTGTA......................2111.00110000000000000000
................................................................................................................................................................................................................................................................................TCATTTGCAGTCGCAA-ACATGTGCAAGGC............................................2911.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................TTGTAAAGAAAG--AATGAAG--G-A.2111.00100000001000000000
.................................................................................................................................................................................................................................................................................................................TG--------TAGATTGTAAAGAAAG--AATGAAG--G-..2611.00100000000000010000
.......................................................................................................................................................................................................................................................................................................GCAAGGCTGTTG--------TAGATT.........................1811.00101000000000000000
.................................................................................................................................................................................................................................................................................................................TG--------TAGATTGTAAAGAAAG--AATGAAG--G-AT2811.00100000000100000000
..................................................................................................................................................................................................................................................................................................................G--------TAGATTGTAAAGAAAG--AAT..........2011.00110000000000000000
.......................................................................................................................................................................................................................................................TTTATTACGACAA--CC--AATTT...........................................................................2011.00100010000000000000
..................................................................................................................................................................................................................................................................................................CATGTGCAAGGCTGTTG--------T..............................1811.00101000000000000000
.........................................................................................................................................................................................................................................................................................................AAGGCTGTTG--------TAGATTGTAAAGA..................2311.00100100000000000000
.........................................................................................AAATGGCGTCAGGATGGG-AAG...........................................................................................................................................................................................................................................2111.00110000000000000000
.........................................................................................................................................................................................................................................................................................GTCGCAA-ACATGTGCAAGGCTGT.........................................2311.00100100000000000000
.....................................................................................................................................................................................................................................................................................TGCAGTCGCAA-ACATGTGCAAGGC............................................2411.00100010000000000000
.....................................................................................AACAAAATGGCGTCAGGATGGG-AAGAAC........................................................................................................................................................................................................................................2811.00100000001000000000
.........................................................................................................................................................................................................................................................................................................AAGGCTGTTG--------TAGATTGTAAAG...................2211.00100100000000000000
........................................................................................................................................................................................................................TAGCCCTATTTGT-CT-TCTG.............................................................................................................1911.00100001000000000000
................................................................................................................................................................................................................................................................................TCATTTGCAGTCGCAA-ACATGTGCAA...............................................2611.00100000000001000000
...............................................................................................................................................................................................................................................................................CTCATTTGCAGTCGCAA-ACAT.....................................................2111.00100001000000000000
..........................................................................................AATGGCGTCAGGATGGG-AAG...........................................................................................................................................................................................................................................2011.00100100000000000000
..............................................................................................................................................................................................................................................................................................................TGTTG--------TAGATTGTAAAGAAAG--AATGA........2611.00100000010000000000
..........................................................................................................................................................................................................................................................................................................AGGCTGTTG--------TAGATTGTAAAGAAA................2411.00100000000000001000
...........................................................................................................................................................................................................................................................................................................GGCTGTTG--------TAGATTGTAAAGAAAG--.............2411.00100000001000000000
.....................................................................................................................................................................................................................................................................................................GTGCAAGGCTGTTG--------TAGATTGTA......................2311.00100100000000000000
....................................................................................................................................................................................................................................................................................................TGTGCAAGGCTGTTG--------TAGATT.........................2111.00100000000010000000
..........................................................................................AATGGCGTCAGGATGGG-AAGAACA--------------.........................................................................................................................................................................................................................2411.00100100000000000000
...........................................................................................................................................................................................................................................................................................................GGCTGTTG--------TAGATTGTAA.....................1811.00100000000010000000
.......................................................................................................................................................................................................................................................................................................GCAAGGCTGTTG--------TAGATTGT.......................2011.00100010000000000000
.....................................................................................AACAAAATGGCGTCAGGATGGG-AAG...........................................................................................................................................................................................................................................2511.00110000000000000000
........................................................................................................................................................................................................TCAAATACGTAGCT-TTAGCCCC...........................................................................................................................2211.00100100000000000000
..........................................................................................AATGGCGTCAGGATGGG-AAGA..........................................................................................................................................................................................................................................2111.00100100000000000000
..........................................................................................................................................................................................................................................................................................................AGGCTGTTG--------TAGATTGTAAA....................2011.00100100000000000000
........................................................................................................................................................................................................................................................................................AGTCGCAA-ACATGTGCAAGGCTGTTG--------TA.............................2811.00100000001000000000
..........................................................................................................................................................................................................................................................................................TCGCAA-ACATGTGCAAGGCTGTTG--------TA.............................2611.00100000000001000000
......................................................................................................................................................................................................................................................................................................TGCAAGGCTGTTG--------TAGATTGTA......................2211.00100000000000001000
droSec2
CGTATGGT---G-----CGC--------------------AC----TTTATGTGTATGCACGGCTGACACACGC--ATCTATATAAACAAAATGGCGTCAGGATGGG-AAGAACA--------------GTTTGGTTTTCCAAACTGTT------G------------TTTGTTCAA----------ATAC---CATTGTTCAAATACGTAGCT-TTAGCCATATTTGT-CT-TCTGTTAAAATAGTTTTATTACGACAA--CC--CATTTCTCATTTGCAGTCGCAA-ACATGTGCAAGGCTGTTG--------TAGATTGTAAAGAAAG--AATGAAG--G-ATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................G--------TAGATTGTAAAGAAAG--AATGAAG--G-..2520.5010010
...............................................................................................................................................................................................................................................................................................................GTTG--------TAGATTGTAAAGAAA................1920.5010010
..................................................................................................................................................................................................................................................................................................................G--------TAGATTGTAAAGAAAG--A............1820.5010010
................................................................................................................................................................................................................................................................................................................TTG--------TAGATTGTAAAGAAAG--.............1920.5011000
.................................................................................................................................................................................................................................................................CAA--CC--CATTTCTCATTTGCAG................................................................2120.5010010
.........................................................................................................................................................................................................................................TCTGTTAAAATAGTTTTATTACGAC........................................................................................2520.5011000
..........................................................................................................................................................................................................................................................................................................AGGCTGTTG--------TAGATTGTAAAGAA.................2320.5010010
...........................................................................................................................................................................................................................................................................................CGCAA-ACATGTGCAAGGCTGT.........................................2120.5010100
...............................................................................................................................................................................................................................................................................................................GTTG--------TAGATTGTAAAGAAAG--.............2020.5010100
....................................................................................................................................................................................................................................................................................................TGTGCAAGGCTGTTG--------TAGATTGTAA.....................2520.5010010
.......................................................................................................................................................................................................................................T-TCTGTTAAAATAGTTTTATTACGACA.......................................................................................2720.5011000
.................................................................................................................................................................................................................................................................................................................................GTAAAGAAAG--AATGAAG--G-..1820.5010010
..........................................................................................................................................................................................................................................................................CATTTCTCATTTGCAGTCGCA...........................................................2120.5010010
dm3
CGTATGGT---G-----CGT--------------------AC----TTTATGTGTATGCGTGGCTGACACACAC--ATCTATATAAACAAAATGGCGTCAGGATGGA-AGGAACC--------------GTTTAGTTTT-----CAGCT------G------------CCCGTTCGAATCAAACCGTATAC---CATTGTTCAAATACGTAGCT-TTAGCCCTATTTGT-CT-TCTGTTAAAATAGTTTTATTACGACAA--CC--AATTTCTCATTTGCAGTCGCAA-ACATGTGCAAGGCTGTTG--------TAGATTGTAAAGAAAG--AATGAAG--G-ATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................ATGTGCAAGGCTGTTG--------TAGATTGT.......................24114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000002100000
....................................................................................................................................................................................................................................................................................................TGTGCAAGGCTGTTG--------TAGATTGT.......................23114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000440000000000000000000000000000000000000000000000000000000202000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TG--------TAGATTGTAAAGAAAG--AATGA........23113.001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................TGTGCAAGGCTGTTG--------TAGATT.........................21110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000200000000100000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000100000000000000000001000000000001000000000001000000000000
............................................................................................................................................................................................................................................................................................................................AGATTGTAAAGAAAG--AATGA........2019.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................ATCTATATAAACAAAATGGCGTC.......................................................................................................................................................................................................................................................2319.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000801000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................AGGCTGTTG--------TAGATTGTAAAG...................2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000100000002000010001000000000000000000000010
.....................................................................................................................................................................................................................................................................................................GTGCAAGGCTGTTG--------TAGATTGT.......................2218.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
....................................................................................................................................................................................................................................................................................................TGTGCAAGGCTGTTG--------TAGATTGTA......................2417.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000301000000000000000000000000
............................................................................................TGGCGTCAGGATGGA-AGG...........................................................................................................................................................................................................................................1817.0070000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000001100
............................................................................................................................................................................................................................................................................................................GCTGTTG--------TAGATTGTAAAGA..................2017.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................ATGTGCAAGGCTGTTG--------TAGATTGTA......................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000001000000
............................................................................................................................................................................................................................................................................................................................AGATTGTAAAGAAAG--AATGAAG--....2216.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000312000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................ATGTGCAAGGCTGTTG--------TAGA...........................2016.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000000000000030000000000
........................................................................................AAAATGGCGTCAGGATGGA-AGGA..........................................................................................................................................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................................................................................................................................................................................................................................................................................A-ACATGTGCAAGGCTGTTG--------T..............................2015.0050000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000010000000
............................................................................................TGGCGTCAGGATGGA-AGGAACC--------------GTT......................................................................................................................................................................................................................2515.0050000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................AATGGCGTCAGGATGGA-AGGAACC--------------.........................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.........................................................................................................................................................................................................................................................................................................AAGGCTGTTG--------TAGATTGTAAAGA..................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................ATGTGCAAGGCTGTTG--------TAGATTG........................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000011100000000000000000000000000
...........................................................................................ATGGCGTCAGGATGGA-AGGAACC--------------G........................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000004
..........................................................................................................................................................................................................................................................................................................AGGCTGTTG--------TAGATTGTAAAGA..................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000001000000000002000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................A-ACATGTGCAAGGCTGTTG--------TA.............................2115.0050000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000
..........................................................................................................................................................................................................................................................................................................AGGCTGTTG--------TAGATTGTA......................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000002000000000000000000000000100000000
...................................................................................................AGGATGGA-AGGAACC--------------GTTTAG...................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TAGATTGTAAAGAAAG--AATGA........2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................AAAATGGCGTCAGGATGGA-..............................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
........................................................................................AAAATGGCGTCAGGATGGA-AGG...........................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TG--------TAGATTGTAAAGAAAG--AAT..........2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................................................................................AAATGGCGTCAGGATGGA-AGGA..........................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000001000000
.....................................................................................................GATGGA-AGGAACC--------------GTTTAGTT.................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100010000100000
............................................................................................................................................................................................................................................................TACGACAA--CC--AATTTCTCATTTGCAGT...............................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................GTGCAAGGCTGTTG--------TAGATTG........................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000200000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................CATGTGCAAGGCTGTTG--------TAGATTGT.......................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
........................................................................................AAAATGGCGTCAGGATGGA-A.............................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000001000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................ATGTGCAAGGCTGTTG--------TAGAT..........................2114.0040000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000100
....................................................................................AAACAAAATGGCGTCAGGATG.................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................AAGGCTGTTG--------TAGATTGTAAAG...................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................................................................AAACAAAATGGCGTCAGGATGGA-AGGA..........................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................GTGCAAGGCTGTTG--------TAGATT.........................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...............................................................................................................................................................................................................................................................................................A-ACATGTGCAAGGCTGTTG--------TAGA...........................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................TGTGCAAGGCTGTTG--------TAGATTG........................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000010000000000000000000000000100
...................................................................................................AGGATGGA-AGGAACC--------------GTT......................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000010000000000000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GTCGCAA-ACATGTGCAAGGCT...........................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..........................................................................................AATGGCGTCAGGATGGA-A.............................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................TGGCGTCAGGATGGA-AGGA..........................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...................................................................................................AGGATGGA-AGGAACC--------------GTTTAGT..................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................GCAA-ACATGTGCAAGGCTGTTG--------T..............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................TTCGAATCAAACCGTATAC---CATTGTT.................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................ATGTGTATGCGTGGCTGA.......................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
........................................................................................................................................................................................................................................................................................................CAAGGCTGTTG--------TAGATTGTAA.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
......................................................................................ACAAAATGGCGTCAGGATGGA-..............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................TTAAAATAGTTTTATTACGAC........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................GGCTGTTG--------TAGATTGTAAAGAA.................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GTCGCAA-ACATGTGCAAGGCTGTT........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................GTTTAGTTTT-----CAGCT------G------------CCCGTTC...........................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
droEre2
CGTATGGA---C-----CGC--------------------AC----TATATGTGTATACACGGCTGACACATACCTATCCATATACACAAAATGGCGTCAGGATGGTGGAGAACC--------------GTTTGGTTTT-----CAGCT------G------------CTCGCTCGAATCAAACCATATAC---CTTTGTTCAAATACGTAGCT-TTAGCCATATTTGT-CT-TCTGTTAAAATAGTTTTATTACGACAA--CC--AATTTCTCATTTGCAGTCGCAA-ACATGTGCAAGGCTGTTA--------TAGATTGTAAAGAAAG--AATGAAG--G-ATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................ACATGTGCAAGGCTGTTA--------TAGATTG........................25112.001200000012
.....................................................................................................................................................................................................................................................................................................GTGCAAGGCTGTTA--------TAGATT.........................2012.0020001010
......................................................................................ACAAAATGGCGTCAGGATGGT...............................................................................................................................................................................................................................................2112.0020000110
...............................................................................................................................................................................................................CGTAGCT-TTAGCCATATTTGT-C...................................................................................................................2211.0010001000
........................................................................................................................................................................CTCGCTCGAATCAAACCATATAC---CT......................................................................................................................................................2511.0011000000
.......................................................ATACACGGCTGACACATACCT..............................................................................................................................................................................................................................................................................2111.0010001000
...............................................................................................CGTCAGGATGGTGGAGAACC--------------GTTTGGT..................................................................................................................................................................................................................2711.0010000001
....................................................................................................................................TGGTTTT-----CAGCT------G------------CTCGCT............................................................................................................................................................................1911.0010001000
......................................................................................................ATGGTGGAGAACC--------------GTTTGGT..................................................................................................................................................................................................................2011.0010000100
..................................................................................................................................................................................................................................................................................ATTTGCAGTCGCAA-ACATGTGCAA...............................................2411.0010000010
..................................................................................................................C--------------GTTTGGTTTT-----CAGCT------G------------CT................................................................................................................................................................................1911.0010000100
...................................................................................................................................................................................................................................................................................................ATGTGCAAGGCTGTTA--------TAGATTGT.......................2411.0010000100
...............................................................................................CGTCAGGATGGTGGAGAAC........................................................................................................................................................................................................................................1911.0010000100
...................................................................................................................................................................................................................GCT-TTAGCCATATTTGT-CT-TCTGTC...........................................................................................................2511.0010100000
..........................................................................................................................................................................................................................................................ATTACGACAA--CC--AATTTCTCATTTGC..................................................................2611.0011000000
..................................................................................................................................................................................................................................................................................................................A--------TAGATTGTAAAGAAAG--AATGAAG--G-..2511.0010000100
............................................................................................................................................................................................................ATACGTAGCT-TTAGCCATATT........................................................................................................................2111.0011000000
................................................................................................GTCAGGATGGTGGAGAACC--------------GT.......................................................................................................................................................................................................................2111.0010000010
.................................................................................................................................................................................................................................................................................................................................GTAAAGAAAG--AATGAAG--G-AT2011.0010000100
...............................................................................................................................................................................................................................................................GACAA--CC--AATTTCTCATTTGCAG................................................................2311.0011000000
.........................................................................................................................................................................................................................................................................................................AAGGCTGTTA--------TAGATTGTAAA....................2111.0011000000
.........................................................................................................................................................................................................................................................................................GTCGCAA-ACATGTGCAAGGCT...........................................2111.0011000000
...........................................................................................................................................................................................................................................................................................................GGCTGTTA--------TAGATTGTAAAGAAAG--A............2511.0011000000
..................................................................................................................................................................................................................................................................................ATTTGCAGTCGCAA-ACATGTGCAAGG.............................................2611.0010000100
..................................................................................................................................................................................................................................................................................................CATGTGCAAGGCTGTTA--------TAGATT.........................2311.0010000010
...............................................................................................................................................................................................................................................................GACAA--CC--AATTTCTCATTTGCA.................................................................2211.0010000010
.................................................ATGTGTATACACGGCTGA.......................................................................................................................................................................................................................................................................................1811.0010001000
................................................................................................GTCAGGATGGTGGAGAACC--------------GTTTGGT..................................................................................................................................................................................................................2611.0010001000
droYak3
CGTATGGA---C-----CAC--------------------AC----TATATGTGTATTCACGGCTGACACATACCCATCCATATATACAAAATGGCGTCAGGATGGG-GAGAACC--------------GTTCGGTTTT-----CAGCT------G------------CTCGCTCGAATCGGAGCGTGTAC---CTATGTTCAAATACGTAGCT-TTAGCCCTACCTGT-CT-TCTGTTAAAATAGTTTTATTACGACAA--CC--AATTTCTCATTTGCAGTCGCAA-ACATGTGCAAGGCTGTTG--------TAGATTGTAAAGAAAG--AATGAAC--G-ATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................C--------------GTTCGGTTTT-----CAGCT------G------------CTCGCT............................................................................................................................................................................23135.0035200000200031
.....................................................................................................................................................................................................................................................................................................GTGCAAGGCTGTTG--------TAGATT.........................2015.00500100040000
...........................................................................................................................................................................................................................................................................................CGCAA-ACATGTGCAAGGCTGT.........................................2114.00400000040000
...................................................................................................................................................................................................................................................................................................ATGTGCAAGGCTGTTG--------TAGATT.........................2213.00301000020000
..............................................................................................................................................................................................................................................................................................AA-ACATGTGCAAGGCTGTTG--------T..............................2112.00200000020000
...............................................................................................................................................................................................................................................................................................A-ACATGTGCAAGGCTGTTG--------TAGATT.........................2512.00200000020000
...................................................................................................................................................................................................................................................................................................ATGTGCAAGGCTGTTG--------TAGATTGT.......................2412.00200000020000
................................................................................................GTCAGGATGGG-GAGAACC--------------GTTCGGT..................................................................................................................................................................................................................2512.00200010010000
..................................................................................................................C--------------GTTCGGTTTT-----CAGCT------G------------CT................................................................................................................................................................................1912.00200100010000
...............................................................................................................................................................................................................................................................................................A-ACATGTGCAAGGCTGTTG--------T..............................2012.00200000020000
............................................................................................................................................................................................................................................................................................GCAA-ACATGTGCAAGGCTGTT........................................2112.00200000020000
..................................................................................................................C--------------GTTCGGTTTT-----CAGCT------G------------CTCGCTCGA.........................................................................................................................................................................2612.00200000000002
...............................................................................................................................................................................................................................................................................................A-ACATGTGCAAGGCTGTTG--------TAGATTGT.......................2712.00200000020000
.....................................................................................................................................................................................................................................................................................................GTGCAAGGCTGTTG--------TAGATTGTA......................2312.00200110000000
..................................................................................................................................................................................................................................................................................................CATGTGCAAGGCTGTTG--------TAGATT.........................2312.00200000110000
.....................................................................................................................................................................................................................................................................................................GTGCAAGGCTGTTG--------TAGATTGT.......................2211.00100000010000
..................AC--------------------AC----TATATGTGTATTCACGGC..........................................................................................................................................................................................................................................................................................2211.00100100000000
...........................................................................................................................................................................................................................................................................................CGCAA-ACATGTGCAAGGCTG..........................................2011.00100100000000
....................................................................................ATACAAAATGGCGTCAGGATGGG-GA............................................................................................................................................................................................................................................2511.00100000010000
................................................................................................GTCAGGATGGG-GAGAACC--------------GTTCGG...................................................................................................................................................................................................................2411.00101000000000
..................................................................................................................................................................................................................................................................................................................G--------TAGATTGTAAAGAAAG--AAT..........2011.00100000010000
..............................................................................................................................................................................................................................................................................................AA-ACATGTGCAAGGCTGTTG--------TAGATT.........................2611.00100000010000
.GTATGGA---C-----CAC--------------------AC----TATATGTGT...................................................................................................................................................................................................................................................................................................2211.00101000000000
.........................................................................................................................................................................................................................................................................................GTCGCAA-ACATGTGCAAGGCTGTTG--------TA.............................2711.00100000010000
.........................................................................................................................................................................................................................................................................................GTCGCAA-ACATGTGCAAGGCTGT.........................................2311.00100000010000
.................................................................................................................................................................................................................................................................................................................................GTAAAGAAAG--AATGAAC--G-AT2011.00101000000000
..........................................................................................AATGGCGTCAGGATGGG-GAGAACC--------------.........................................................................................................................................................................................................................2411.00100100000000
.............................................................................................................................................................................................................................................................................................CAA-ACATGTGCAAGGCTGT.........................................1911.00100100000000
...............................................................................................CGTCAGGATGGG-GAGAAC........................................................................................................................................................................................................................................1811.00100100000000
...................................................................................................................................................................................CGGAGCGTGTAC---CTATGTTC................................................................................................................................................2011.00101000000000
..........................................................................................................................................................................................................................................................................................................AGGCTGTTG--------TAGATTGTAAAGAAA................2411.00100000010000
...............................................................................................................AACC--------------GTTCGGTTTT-----CAGCT------G------------CTC...............................................................................................................................................................................2311.00100100000000
................................................................................................................................................................................AATCGGAGCGTGTAC---CTAT....................................................................................................................................................1911.00100000010000
................................................................................................................................................................................................................................................................ACAA--CC--AATTTCTCATTTGCAGT...............................................................2311.00100000010000
...............................................................................................................................................................................................................................................................................................A-ACATGTGCAAGGCTGTTG--------TAGATTG........................2611.00100010000000
....................................................................................................................................................................................................................CT-TTAGCCCTACCTGT-CT-TCTGT............................................................................................................2311.00100100000000
..............................................................................................................................................................................................................ACGTAGCT-TTAGCCCTACCTGT-CT-TCT..............................................................................................................2711.00100010000000
....................................................................................................................................................................................................ATGTTCAAATACGTAGCT-TTAGCC.............................................................................................................................2411.00100100000000
..................................................................................................................................................................................................................................................................................ATTTGCAGTCGCAA-ACATGTGCAAGGCT...........................................2811.00100100000000
....................................................................................................................................................................................................................................................................................................TGTGCAAGGCTGTTG--------TAGA...........................1911.00100000010000
.............................................................................................................................................................................................................................................................................................................................GATTGTAAAGAAAG--AATGAAC--....2111.00100000010000
................................................................................................................................................................................AATCGGAGCGTGTAC---CTATGT..................................................................................................................................................2111.00100100000000
............................................................................ATCCATATATACAAAATGGCGTCAGG....................................................................................................................................................................................................................................................2611.00101000000000
.....................................................................................................................................................................................................................................................................................................GTGCAAGGCTGTTG--------TAGATTGTAAAGAA.................2811.00100000010000
......GA---C-----CAC--------------------AC----TATATGTGTATTCACGGC..........................................................................................................................................................................................................................................................................................2611.00100100000000
...............................................................................................................................................................................................................................................................................................A-ACATGTGCAAGGCTGTTG--------TAG............................2211.00100000010000
...............................................................................................................................................................................................................................................................................................................GTTG--------TAGATTGTAAAGAAAG--AATGAAC--....2711.00100100000000
.............................................................................................................................................................................................................................................................................................................................GATTGTAAAGAAAG--AATGAAC--G-AT2411.00100000010000
.......................................................................................CAAAATGGCGTCAGGATGGG-..............................................................................................................................................................................................................................................2011.00100000010000
....................................................................................................................................................................................................................................................................................................TGTGCAAGGCTGTTG--------TAGATTGTAAAGA..................2811.00100000010000
..........................................................................................................................................................................................................................................................................................TCGCAA-ACATGTGCAAGGCTGTT........................................2311.00100010000000
...............................................ATATGTGTATTCACGGCTGACACATA.................................................................................................................................................................................................................................................................................2611.00101000000000
.................................................................................................................................................................................................................................................................................................ACATGTGCAAGGCTGTTG--------TAGATTGTA......................2711.00100000010000
...........................................................................................................................................................................................................................................................................................CGCAA-ACATGTGCAAGGCTGTTG--------TAG............................2611.00100000010000
..........................................................................................................................................................................................................................................................................................................AGGCTGTTG--------TAGATTGTAA.....................1911.00100000010000
.........................................................................................AAATGGCGTCAGGATGGG-GAGA..........................................................................................................................................................................................................................................2211.00100000010000
...................................................................................................................................................................................................................................................................................TTTGCAGTCGCAA-ACATGTGC.................................................2111.00101000000000
.................................................................................................................................................................................................................................................................................................ACATGTGCAAGGCTGTTG--------TA.............................2011.00100000010000
droEug1
TGTATAGT---G---TTCAC--------------------GC----TGTGTCTGTATGCGTGACTGACACATGC------------TCAAAATGGTGGCAGGAAGAAAAAAGACT--------------A--GAGTTTT-----C------------------------------GAATCGAATCATTTAC---CTT--------TATGTAGCA-T----------TGA-TC-TTTGTTAAACTAGTTTTATCACGACAA--CC--AATTTCTCATTTGCAGTCGCAA--------------TATTA--------TAGATTGTAATGAAAA--AGTGAAG--G-ATSizeHit CountTotal NormTotal
No Reads
droBia1
TGTATAGT---G---C-CAG-TCTGA---GCG--------CG----TGTGTGTGCGTGCGTGGCATGCAGACGC--A--------CTCAAAATGGTGG-AGAATGGCTGAATACA--------------G-TTGCTTTT-----CAGAC------GAAG--AAC--------------------CGATTTC---C------------TGTAGCT-TTAGTTTT-TTAAA-AA-CCTGTTAAACTAGTGTTATTATGACAA--CC--AATTTCTCATTTGCAGTCGCAA-ACATGTGCAAGGCTGTTA--------TAGATTGTAATGAATG--AGTGAA-------SizeHit CountTotal NormTotal
No Reads
droTak1
TACA--GT---GGTGC-C-C--CTAC---GCG--------AG----TGTGTGTGCATACAT-----------ACA----CGCGT-GACAAAATGGTGGCAGGAAGAG--AAAACC--------------GA--GAAAAT--------CG------GTTG--AAA-ACG----------------CGTTTCC---CAT------------TAGCT-TTAGCCCT-TGTGA-AC-CCTGTTAAACTAGTTTTATTACGACAA--CCAAAATTTCTCATTTGCAGTCGCAA-ACATGTGCAAGGCTGTTG--------TAGATTGTAATGAAAG--TGTGAAG--G-ATSizeHit CountTotal NormTotal
No Reads
droEle1
TATATGAT---G-----------------------------C----TGTGTGTGTATACGTGACTGACACATACG----CACATGCACAAAATGGTGGCACAAAGAGCGAAAACT--------------GTTTGATTTT-----CAGCT------GTCG--TAA--------------------CATTTCC---CTT--------TACGTCGCC-CTAGCTTTATTTAA-TC-ATTGTTAAACTAGTTTTATTACGACAA--CC--CATTTCTCATTTGCAGTCGCAA-ACGTGTGCAAGGCTGTTA--------TAGATTGTAATAAAAG--A-----A--G-ATSizeHit CountTotal NormTotal
No Reads
droRho1
TATATAGT---G-----TAT--------------------GTGCCGTTTGGGTGTATACGTGAATGACACATACG----CACATGCACAAAATGGTGGCAGGAAGAGAGAAAACT--------------GTT----TTT-----CAGTT------GTCG--AAA--------------------TATTTCC---CTT--------TACGTCGCC-CTAGCTTTATTTGA-TC-ATTGTTAAACTAGTTTTATTACGACAA--CC--CATTTCTCATTTGCAGTCGCAA-ACATGTGCAAGGCTGTTA--------TAGATTATAATGAAAG--A-----A--G-ATSizeHit CountTotal NormTotal
No Reads
droFic1
CATATGGT---G-----TTC--------------------GC----TTTGTGTGTATACGTGACTAACACACAC--AGAAATATTTACAAAATGGTGGCAGGAAAAGAAAACACT--------------ATTCGATTTT-----CAGCT------GTCG--AGT--------------------CATTTAT---TCT--------TGCGTCGCA-ATAGCTTAAAATTA-TC-ATTGTTAAACTAGTTTTATTACGACAA--CC--AATTTCTCATTTGCAGTCGCAA-ACATGAACAAGGCTGTTA--------TAGATTGTAAAAAAAAAGAGTGAAG--G-CTSizeHit CountTotal NormTotal
No Reads
droKik1
TATATGGT---G------GT--------------------GC----TGTGTGTGTATACGTGACTGTCGTGTGCACAT---------------------------------------------------------------------CT------GTCG--AAA--------------------CATTTCC---CTT--------TTCGTCGCAGTTAGATTTATTTGT-TC-ATTGTTAAACTAGTTTTATTACGACAA--CC--AATTTCTCATTTGCAGTCGCAA-ACATGTACAAGGCTGTTA--------TAGATTGTAATGAAAG--AGTGAAG--G-ATSizeHit CountTotal NormTotal
No Reads
droAna3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGT-TT-GTTGTTAAATTAGTTTTATTACGACAA--CC---ATTTCTCATTTGCAGTCGCAA-ACAT----------GTTA--------TAGATTGTAATGAAAAAGAGAGAAA--G-ATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................TA--------TAGATTGTAATGAAAAAGAGA..........2311.001010000
.................................................................................................................................................................................................................................................................CAA--CC---ATTTCTCATTTGCAGT...............................................................2111.001010000
...........................................................................................................................................................................................................................................................................................CGCAA-ACAT----------GTTA--------TAGATTGT.......................2111.001010000
droBip1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGT-TT-GTTGTTAAATTAGTTTTATTACGACAA--CC---ATTTCTCATTTGCAGTCGCAA-ACAT----------GTTA--------TAGATTGTAATGAAGAAGAGAGAAAGAGGA-SizeHit CountTotal NormTotal
No Reads
dp5
TATA--GTCGGC-----CAT--------------------GT----TTTGTGTGTATACATGA---------------------------AATGG-------AAGAG-GAGAACA-------GCACCATGTTCGAGATT-----CATCT------GTCG--AAA--------------------TATTTTT---TCC--------TCTGTCGCT-TTAGATATATTTGT-TCATTTGTTAAATTAGTTTTATTACGACAA--CCC-AATTTCTCATTTGCAGTCGCAA-TCATGTGCAAGGCTGTTA--------TAGATTGTAATGAAAT--AATGAAG--G-ATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................GTGTATACATGA---------------------------AATGG-------AAGAG-GA............................................................................................................................................................................................................................................2413.0030300000000
............................................................................................................................................................................................................................................................................TTTCTCATTTGCAGTCGCA...........................................................1912.0020200000000
..........................................................................................................................................................................................................................................................................................TCGCAA-TCATGTGCAAGGC............................................1911.0010100000000
...................................................................................................................................................................................................................................................................................................ATGTGCAAGGCTGTTA--------TAGAT..........................2111.0010000100000
..................................................................................................................................................................AA--------------------TATTTTT---TCC--------TCTGTCGCT-...................................................................................................................................2111.0010100000000
....................................................TGTATACATGA---------------------------AATGG-------AAGAG-GA............................................................................................................................................................................................................................................2311.0010100000000
..........................................................CATGA---------------------------AATGG-------AAGAG-GAGAACA-------................................................................................................................................................................................................................................2211.0010000001000
..................................................................................................................................................................................................................................................................AA--CCC-AATTTCTCATTTGCA.................................................................2011.0010100000000
...........................................................................................................................................................................................................................................................................ATTTCTCATTTGCAGTCGCAA-T........................................................2211.0010100000000
..............................................................................................................................................................................................................................................................................................AA-TCATGTGCAAGGCTGTT........................................1911.0010100000000
..................................................................................................................................................................................................................................................................................................CATGTGCAAGGCTGTTA--------TAGAT..........................2211.0010000100000
...................................................GTGTATACATGA---------------------------AATGG-------A...................................................................................................................................................................................................................................................1811.0010000100000
..........................................................................................................................................................................................TTTTT---TCC--------TCTGTCGCT-TTAGATATATT........................................................................................................................2811.0010100000000
..............................................................................................................................................................................................................................................................................................AA-TCATGTGCAAGGCTGTTA--------TAGATTGT.......................2811.0010100000000
......................................................................................................AAGAG-GAGAACA-------GCACCATGTT......................................................................................................................................................................................................................2211.0010100000000
..............................................................................................................................................................................................................................................................................................AA-TCATGTGCAAGGCTGTTA--------TAGATT.........................2611.0010010000000
....................................................TGTATACATGA---------------------------AATGG-------AAGAG-GAGAA.........................................................................................................................................................................................................................................2611.0010010000000
..................................................................................................................................................................................................................................................................................ATTTGCAGTCGCAA-TCATGTGCAAGGC............................................2711.0010010000000
...................................................GTGTATACATGA---------------------------AATGG-------AAGA................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................ATGG-------AAGAG-GAGAACA-------GCACCAT.........................................................................................................................................................................................................................2311.0010010000000
........CGGC-----CAT--------------------GT----TTTGTGTGTATACATGA---------------------------AAT.............................................................................................................................................................................................................................................................2911.0010010000000
...............................................................................................................................................................................................................................................................................................A-TCATGTGCAAGGCTGTTA--------TAGATT.........................2511.0010000100000
.................................................................................................................................................................................................................................................................................................TCATGTGCAAGGCTGTTA--------T..............................1911.0010000100000
.....................................................................................................................................................................................................................................................................................................GTGCAAGGCTGTTA--------TAGATTGTAATG...................2611.0010100000000
..................................................................................................................................................................................................................................................................................................CATGTGCAAGGCTGTTA--------TAGATTGTAAT....................2811.0010100000000
........................................................................................................................................................................................................................................................................................................CAAGGCTGTTA--------TAGATTGTAA.....................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................GCAAGGCTGTTA--------TAGATT.........................1811.0010100000000
..........................................................................................................................................T-----CATCT------GTCG--AAA--------------------TATTTTT---TCC--------TC...........................................................................................................................................2511.0010100000000
.........................................................................................................................................................................................................................................................................................GTCGCAA-TCATGTGCAAGGCTGTT........................................2411.0010100000000
...............................................................................................................................................................................................................................................................GACAA--CCC-AATTTCTCATTTGCAGT...............................................................2511.0010000100000
..................................................................................................................................................................................................................................................................................................CATGTGCAAGGCTGTTA--------TAGATTGTA......................2611.0010100000000
..............................................................................................................................................................................................................................................................................................AA-TCATGTGCAAGGCTGT.........................................1811.0010000100000
..........................................................................................................................................................................................TTTTT---TCC--------TCTGTCGCT-TTAG...............................................................................................................................2111.0010000100000
........................................................................................................GAG-GAGAACA-------GCACCATGTTCGAGATT-----..........................................................................................................................................................................................................2711.0010100000000
.....................................................................................................................................................................................................................................................................................................GTGCAAGGCTGTTA--------TAGATT.........................2011.0011000000000
.......................................................................................................................................................................................................................................................................................CAGTCGCAA-TCATGTGCAAGGC............................................2211.0010100000000
.......................................................................................................AGAG-GAGAACA-------GCACCATGAAA.....................................................................................................................................................................................................................2220.5010010000000
droPer2
TATA--GTCGGC-----CAT--------------------GT----TTTGTGTGTATACATGA---------------------------AATGG-------AAGAG-GAGAACA-------GCACCATGTTCGAGATT-----CATCT------GTCG--AAA--------------------TATTTTT---TCC--------TCTGTCGCT-TTAGATATATTTGT-TCATTTGTTAAATTAGTTTTATTACGACAA--CCC-AATTTCTCATTTGCAGTCGCAA-TCATGTGCAAGGCTGTTA--------TAGATTGTAATGAAAT--AATGAAG--G-ATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................ATGG-------AAGAG-GAGAACA-------GCACC...........................................................................................................................................................................................................................2113.003300000
.........................................................................................................................................................................................................................................................................................GTCGCAA-TCATGTGCAAGGC............................................2012.002110000
..................................................................................................................A-------GCACCATGTTCGAGATT-----CATCT------GTCG--A........................................................................................................................................................................................2812.002000002
.............................................................................................................................................................................................TT---TCC--------TCTGTCGCT-TTAG...............................................................................................................................1812.002200000
...........................................................................................ATGG-------AAGAG-GAGAACA-------GCACCAT.........................................................................................................................................................................................................................2312.002200000
...............................................................................................................................................................................................................................................................................................A-TCATGTGCAAGGCTGTTA--------TAGATT.........................2512.002100001
.................................................................................................................................................................................................................................................................................CATTTGCAGTCGCAA-TCATGTGCAAGGCT...........................................2912.002200000
...........................................................................................................................................................................................................................................................................................CGCAA-TCATGTGCAAGGCTGTTA--------TAGATT.........................2911.001100000
............................................................................................................................................................................................................................................................................................GCAA-TCATGTGCAAGGCT...........................................1811.001010000
.......................................................................................................................................................................................................................................................................................................GCAAGGCTGTTA--------TAGATT.........................1811.001001000
.....................................................................................................................................................................................................................................................................................................GTGCAAGGCTGTTA--------TAGATTGTAATGA..................2711.001010000
............................................................................................................................................................................................................................................................................................GCAA-TCATGTGCAAGGCTGTTA--------TAGATT.........................2811.001010000
..................................................................................................................................................................................................................................................................................................................A--------TAGATTGTAATGAAAT--AATGAAG--G-AT2711.001100000
...................................................................................................................................................CT------GTCG--AAA--------------------TATTTTT---TCC--------TCTGTCGCT-...................................................................................................................................2811.001100000
...................................................................................................................................................................A--------------------TATTTTT---TCC--------TCTGTCGCT-TTA................................................................................................................................2311.001100000
...............................................................................................................................................................................................................................................................................................................GTTA--------TAGATTGTAATGAAAT--.............2011.001000001
.............................................................................................GG-------AAGAG-GAGAACA-------GCACC...........................................................................................................................................................................................................................1911.001010000
.......................................................................................................................................................................................................................................................................................................GCAAGGCTGTTA--------TAGATTGT.......................2011.001010000
.ATA--GTCGGC-----CAT--------------------GT----TTTGT.......................................................................................................................................................................................................................................................................................................1911.001100000
..............................................................................................................................................................................................................................................................................................AA-TCATGTGCAAGGCTGTTA--------TAGAT..........................2511.001001000
...........................................................................................ATGG-------AAGAG-GAGAACA-------GCACCATGTT......................................................................................................................................................................................................................2611.001100000
.............................................................................................................................................................................................................................................................................TTCTCATTTGCAGTCGCAA-TC.......................................................2111.001010000
...............................................................................................................................................................................................................................................................................................A-TCATGTGCAAGGCTGTTA--------TA.............................2111.001100000
....................................................................................................................................................................................................................................................................................................TGTGCAAGGCTGTTA--------TAGATTG........................2211.001010000
droWil2
TATATGCT---G---C-T-C---TGATACACAGGCACTATGT----GATATGTGTGTGTGAGA------AAGG-------------AAGAAGTGACAGCAGAAAGAA-AAAGAGAGAAGCAAACACTGTATTTAAGTTT-----CAGCTAAAT--GACG--AAA--------------------TATTTTC-ACATT--------TTTAATATT-TTTGTTGTACATATATT-TTTGTTAAATTAGTTTTATTACGAAAAAACC--CATTTCTCATTTGCAGTCGCAA-ACA-----------------------TAGATTATAAAAGAAAAATGTGAAG--G-A-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................GAGA------AAGG-------------AAGAAGTGACAGCAGAAA..................................................................................................................................................................................................................................................2612.00200200
.....................................................GTGTGTGAGA------AAGG-------------AAGAAGT.............................................................................................................................................................................................................................................................2112.00200200
..........................................................................................AGTGACAGCAGAAAGAA-AAAGAG........................................................................................................................................................................................................................................2312.00200020
...........................................................GAGA------AAGG-------------AAGAAGTGACAGCA......................................................................................................................................................................................................................................................2211.00100100
...........................................................GAGA------AAGG-------------AAGAAGTGACAGC.......................................................................................................................................................................................................................................................2111.00100100
.....................................TATGT----GATATGTGTGTGTGAGA------AA...................................................................................................................................................................................................................................................................................2411.00100100
....................................................................................................................................................................................................................................................................AACC--CATTTCTCATTTGCAGTCGC............................................................2411.00100100
................................................................................................AGCAGAAAGAA-AAAGAGAG......................................................................................................................................................................................................................................1911.00100100
.............................................................................................GACAGCAGAAAGAA-AAAGAG........................................................................................................................................................................................................................................2011.00100010
................................................................................................................................................CAGCTAAAT--GACG--AAA--------------------TATTTTC-ACAT......................................................................................................................................................2711.00100010
.................................................ATGTGTGTGTGAGA------AAGG-------------AA..................................................................................................................................................................................................................................................................2011.00100100
.............................................................GA------AAGG-------------AAGAAGTGACAGC.......................................................................................................................................................................................................................................................1911.00100100
.....................................................................................................................................AAGTTT-----CAGCTAAAT--GACG--.........................................................................................................................................................................................1911.00100010
.......................................................................................................................................................................................................................................................................C--CATTTCTCATTTGCAGTC..............................................................1911.00100001
...................................ACTATGT----GATATGTGTGTGT...............................................................................................................................................................................................................................................................................................2011.00100100
..............................................GATATGTGTGTGTGAGA------AAGG-------------AAGA................................................................................................................................................................................................................................................................2511.00100100
....................................................TGTGTGTGAGA------AAGG-------------AAGAAGT.............................................................................................................................................................................................................................................................2211.00100100
........................................................................................GAAGTGACAGCAGAAAGAA-A.............................................................................................................................................................................................................................................2011.00100001
.......................................................................................................................................GTTT-----CAGCTAAAT--GACG--A........................................................................................................................................................................................1811.00100010
........................................................................G-------------AAGAAGTGACAGCAGAAAGAA-..............................................................................................................................................................................................................................................2211.00100010
...................................................................................................................................................................................................................................................................................................A-----------------------TAGATTATAAAAGAAAAATGTG.........2311.00100010
......................................................TGTGTGAGA------AAGG-------------AAGAAG..............................................................................................................................................................................................................................................................1911.00100100
..............................................................................................ACAGCAGAAAGAA-AAAGAGAGAAGCA.................................................................................................................................................................................................................................2611.00100010
.....................................TATGT----GATATGTGTGTGTGAGA------AAG..................................................................................................................................................................................................................................................................................2511.00100010
.............................................................................................GACAGCAGAAAGAA-AAAGA.........................................................................................................................................................................................................................................1911.00101000
...................................................................................................AGAAAGAA-AAAGAGAGAAGC..................................................................................................................................................................................................................................2020.50100100
.....................................................................................................AAAGAA-AAAGAGAGAAGCA.................................................................................................................................................................................................................................1920.50100100
.....................................................................................................................................................................................................................................................................ACC--CATTTCTCATTTGCAA................................................................1920.50100010
droVir3
CCTATAGC---A-----CTT-------------------GGG----TATT-G-------G-------------------------------------------------AGAAGT------------GTGTTTAAGCTT-----AAAAT------GTCATGAACAACT----------------TG-TTTT-TCATT--------------TCT-TT-----GATTTGA-TAATTTGTTAAATTAGTTTTATTACGAAAG---A--AATTTCTCATTTGCAGTCGCAAAACGTGTGCAAACCTGTTATACATACATAGATTGTAATGAAAA-ATGTGAAG--G-CTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......C---A-----CTT-------------------GGG----TATT-G-------G-------------------------------------------------AGAAGT------------G..........................................................................................................................................................................................................................2113.003000000300000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................ATAGATTGTAATGAAAA-ATGTGAAG--G-C.2712.002001000000000100000000000000000000000000000000000000000000000000
...................................................................................................................................TTAAGCTT-----AAAAT------GTCATGAAC......................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................GTGTTTAAGCTT-----AAAAT------GTCATGAAC......................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................CATTTGCAGTCGCAAAACGTGTGC.................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................TTTT-TCATT--------------TCT-TT-----GATTT.......................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GTCGCAAAACGTGTGCAAACCTGTT........................................2511.001000000000000000000100000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................GTAATGAAAA-ATGTGAAG--....1811.001000000000000000100000000000000000000000000000000000000000000000
...........A-----CTT-------------------GGG----TATT-G-------G-------------------------------------------------AGAAGT------------GT.........................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................AAATTAGTTTTATTACGAAAG---A--AATTTCTCATTTGCAGT...............................................................3911.001000000000000000000000000000000000000000000000000000000010000000
..........................................................................................................................................................................................................................................................................AATTTCTCATTTGCAGTCGCA...........................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TAGATTGTAATGAAAA-ATGTGAA.......2311.001000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................TTTGA-TAATTTGTTAAATTAG....................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................AGATTGTAATGAAAA-ATGTGAAG--G-CT2611.001000000000000000000000000000000000000000000000000000000000010000
.................CTT-------------------GGG----TATT-G-------G-------------------------------------------------AGAAGT------------...........................................................................................................................................................................................................................1811.001000000000010000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................AATTTCTCATTTGCAGTCGC............................................................2011.001000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................ATGAACAACT----------------TG-TTTT-TCATT--------------.......................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...........................................................G-------------------------------------------------AGAAGT------------GTGTTTAAGCTT-----A.........................................................................................................................................................................................................2011.001000000100000000000000000000000000000000000000000000000000000000
......GC---A-----CTT-------------------GGG----TATT-G-------G-------------------------------------------------AGAA.........................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000100
............................................................................................................................................................................................................................................................................................GCAAAACGTGTGCAAACCTGTTATAC....................................2611.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................ATAGATTGTAATGAAAA-AT............1911.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GTCGCAAAACGTGTGCAAAC.............................................2011.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TGCAGTCGCAAAACGTGTGC.................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................ACGTGTGCAAACCTGTTATA.....................................2011.001000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................ACATACATAGATTGTAATGA..................2011.001000000000000000000000000000000001000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................AGATTGTAATGAAAA-ATGTGAA.......2211.001000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................CGCAAAACGTGTGCAAACCTGTTAT......................................2511.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................AAAACGTGTGCAAACCTGTTATACA...................................2511.001000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................TTCTCATTTGCAGTCGCAAAACGTGTGC.................................................2811.001000000000000000000000000001000000000000000000000000000000000000
..TATAGC---A-----CTT-------------------GGG----TATT-G-------G-------------------------------------------------AGAA.........................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................AACT----------------TG-TTTT-TCATT--------------TCT-TT-----............................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CTGTTATACATACATAGATTGTAATGA..................2711.001000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................CTCATTTGCAGTCGCAAAACGTGTGC.................................................2611.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TCATTTGCAGTCGCAAAACGTGTGC.................................................2511.001000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................AACCTGTTATACATACATAGATTGT.......................2511.001000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................TTGCAGTCGCAAAACGTGTGC.................................................2111.001000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................ATAGATTGTAATGAAAA-ATGTG.........2211.001000000000000010000000000000000000000000000000000000000000000000
.............................................................................................................................................................CATGAACAACT----------------TG-TTTT-TC........................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................TTACGAAAG---A--AATTTCTCATTTGC..................................................................2411.001000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................ATACATAGATTGTAATGAAA................2011.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................GTTAAATTAGTTTTATTAA...........................................................................................1940.251000000000000000000000000000010000000000000000000000000000000000
droMoj3
CATATATA---C-----TTG--------------------GA----TATATGTACATAAGAGA---------------------------AATG----------------------------------TGTTTTAGCTC-----AAAAA---TTCGTCATGCTTACCT----------------TG-TTTATTAATT--------------TCT-CT-----GAT---A-TA-TTTGTTAAATTAGTTTTATTACGAAAG---A--AATTTCTCATTTGCAGTTGCAATACGCGTGCAAACCTGTTATACATACATAGATTGTAATGAAAATATGTGAA---G-GCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................TTATTACGAAAG---A--AATTTCTCATTTGCAG................................................................2911.001100000
...................................................................................................................................................................................................................................................................................................................TACATACATAGATTGTAATG...................2011.001100000
...............................................................................................................................................................................................................................................................................................................GTTATACATACATAGATTGT.......................2011.001100000
...........................................................................................................................................................................................................................................................................................................................TAGATTGTAATGAAAATAT............1911.001100000
..........................................................................................................................................................................................................................................................ATTACGAAAG---A--AATTTCTCATTTGCAG................................................................2711.001100000
.........................................................................................................................................................................................G-TTTATTAATT--------------TCT-CT-----GAT---A-TA-T................................................................................................................2311.001100000
...................................................GTACATAAGAGA---------------------------AATG----------------------------------TGTTTTAGCT................................................................................................................................................................................................................2611.001100000
.............................................................................................................................................................................................................................................................................TTCTCATTTGCAGTTGCAA..........................................................1911.001100000
...............................................................................................................................................................................................................................................................................CTCATTTGCAGTTGCAATACGCGT...................................................2411.001000001
...............................................................................................................................................................................................................................................................................CTCATTTGCAGTTGCAATACGCGTG..................................................2511.001100000
droGri2
CGTATTTT---G------ACA-CTT--------------CAA----TATTTGAG----C--------------------------------------------------ATAACT--------------GTTTCTTTCT-----CATTT------C------------CTAT-----------------------------------------T-TT-----GATTTG-----TTTGTTAAATTAGTTTTATTACG-CAA--GA--AATTTCTCATTTGCAGTCGCAAAACGT------------------------AATTGTAAAGAAAA-ATGTGAAG-AG-GCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
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Generated: 05/18/2015 at 11:00 PM