dsi_5867

TTTAATTTATTGTGAACTTTCGCTTCATTTAGACTGGTTAGGTGGTTGGTTAATTCCATTTGTCTTCGTTTTTTTGTATTATTTTCGCGAAGGGATAATTTTTTAATCGTTTATGATTATTAAAAATTTACAAACAACTATCATCTTTGGAATCTTAAAAATGAGTTTTCAATTTGCCGTACTGACCCTTATCTTAACAGCCTTCACAGTCTCTTTGTGTGCTGAACAAAAAATTTCAAAGGGTGACGGA ************************************************.............((((((.................))))))(((((((((..(((((......)))))..))).................((...((((((.((((....)))).))))))..))............))))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	GSM343915 embryo	SRR618934 dsim w501 ovaries	M024 male body	SRR553486 Makindu_3 day-old ovaries	M025 embryo	O002 Head	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs
...AATTTATTGTGAACTTTCGCT..................................................................................................................................................................................................................................	21	0	1	3.00	3	3	0	0	0	0	0	0	0	0	0
...AATTTATTGTGAACTTTCGCTT.................................................................................................................................................................................................................................	22	0	1	3.00	3	3	0	0	0	0	0	0	0	0	0
..................TTCGCTTCATTTAGACTG......................................................................................................................................................................................................................	18	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
..................TTCGCTTCATTTAGACTGGTTAGGTGGT............................................................................................................................................................................................................	28	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................................ACTGGTTAGGTGGTTGGT........................................................................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................CGCTTCATTTAGACTGGTTAAGT...............................................................................................................................................................................................................	23	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.......................TTCATTTAGACTGGTTAGG................................................................................................................................................................................................................	19	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..................TTCGCTTCATTTAGACTGGTT...................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TTCAATTTGCCGTACTGACC...............................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
............................................................TGTCATCGCTTTTATGTATTAT........................................................................................................................................................................	22	3	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................CATTTAGACTGGTTAGGTGGTT...........................................................................................................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...AATTTATTGTGAACTTTCGCTTCA...............................................................................................................................................................................................................................	24	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................TTCATTTTGCTGTACTGACC...............................................................	20	2	2	0.50	1	1	0	0	0	0	0	0	0	0	0
............TGAACTTTCGCTTCA...............................................................................................................................................................................................................................	15	0	3	0.33	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................TCAATGAGCCGTACTGAAC...............................................................	19	3	7	0.29	2	1	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................TCTGCCGTACTGACC...............................................................	15	1	5	0.20	1	0	0	0	0	0	0	0	1	0	0
......................................TAGGTGGTTCGTTAA.....................................................................................................................................................................................................	15	1	11	0.18	2	0	0	0	0	0	0	0	1	0	1
..............................................................TCTTCGTCTTTTTATATTAATTT.....................................................................................................................................................................	23	3	7	0.14	1	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................CTTTGGAATCTTATA...........................................................................................	15	1	16	0.06	1	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................................................................TTTTCAAATTGCCGTA.....................................................................	16	1	17	0.06	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................TTCACGGGGTGACGGA	16	2	17	0.06	1	0	0	0	0	0	0	0	0	1	0
......................................TAGGTGGTTCGTTAAGT...................................................................................................................................................................................................	17	2	18	0.06	1	0	0	0	0	1	0	0	0	0	0
......................................TAGGTGGTTGTTTAAGT...................................................................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	0	0	0	0	1

AAATTAAATAACACTTGAAAGCGAAGTAAATCTGACCAATCCACCAACCAATTAAGGTAAACAGAAGCAAAAAAACATAATAAAAGCGCTTCCCTATTAAAAAATTAGCAAATACTAATAATTTTTAAATGTTTGTTGATAGTAGAAACCTTAGAATTTTTACTCAAAAGTTAAACGGCATGACTGGGAATAGAATTGTCGGAAGTGTCAGAGAAACACACGACTTGTTTTTTAAAGTTTCCCACTGCCT ************************************************.............((((((.................))))))(((((((((..(((((......)))))..))).................((...((((((.((((....)))).))))))..))............))))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	M023 head	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	M053 female body	SRR902009 testis
...........................................................................................................................................TAGTAGAAACCTTAGAATTTTTACT......................................................................................	25	0	1	1.00	1	0	0	1	0	0	0	0
.......................................................................................................................................................................................................CGGAAGTGTCAGAGAAACACACG............................	23	0	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................CATGACTGGGAATAGAATT.....................................................	19	0	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................ACCTAAAAGTTTAACGGCATG....................................................................	21	3	4	0.50	2	0	0	0	2	0	0	0
...............................................................................................................................................................................CGGAATGACTGGGAATG..........................................................	17	2	4	0.50	2	2	0	0	0	0	0	0
........................................................................................................................................................................................................GGAATTATCAGAGAAACA................................	18	2	7	0.29	2	0	0	0	0	2	0	0
...........................................................................................................................................................................TATACGGCATGACTAGGAAG...........................................................	20	3	5	0.20	1	0	0	0	0	0	0	1
......................................................................................................................................................................................................TCGGAAGGGTCTGAGAAGCA................................	20	3	5	0.20	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................AGAGCAACATACGACTTGGT.....................	20	3	7	0.14	1	1	0	0	0	0	0	0
................................................................................................................................................GAAACCTTGGAATTTGT.........................................................................................	17	2	20	0.05	1	0	0	0	0	1	0	0

Species	Coordinate	ID	Alignment
droSim2	4:124626-124875 -	dsi_5867	TTT-AATTTATTGTGAACTTTCGCTTCATTTAGACTGGTTAGGTGGTTGGTTAATTCCATTTGTCTTCGTTTTTTTG---TATTATT---TTCGCGA------AGG---GATAATTT--TTT-AATCGTT--TATGATTATTAAAA-------ATTTACAAA--------------------------------------------------------------------------------CAACTATCATCTTTGGAATCTTAAAAATGAGTTT------TCAATTTGC---CGTACTGACCCTTATCTT------------AACAGCCTTCACAGTCTCTTTGTG---------TGCTGAACAAAAAATTTCAAAGGGTGAC------------G--GA
droSec2	scaffold_52:118336-118576 -		TTT-AATTTATTGTGAACTTTCGCTTAACTTAGACTGGTTAGGTGGTTGGTTAATTCCATTTGTCTTCGTTATTTTG---TATTATT---TTCGCGA------AGG---GATAATTT--TTT-AATCGTT--TGTGATTATTAAAA-------ATTTACAAA---------------------------------------------------------------------------------------C--AACTGGAATCTTAAAAATGAGTTT------TCAATTTGC---CGTACTGACCCTTATCTT------------AACAGCCTTCACAGTCTCTCTGTG---------TGCTGAACAAAAAATTTCTAAGGGTGAC------------G--GA
dm3	chr4:176440-176685 -		TTT-AATTTAGTGTGAACTTTCGCTTCATTTAGGCTGGTTAGGTGGTTA----ATTCCATTTGTCTTCGTTCTTTTG---TATTATT---TTTACAA------AGC---GATAATAT--TTT-AATCGTT--TATGATTATTACAA-------TATAACAAA--------------------------------------------------------------------------------AAGTTAACATCTTTGGAATCTTAAAAATGAGTTT------TCATTTTGC---TGTACTGACCCTTATTTT------------AACAGCCTTCACAGTTTCTCTGTG---------TGCTGAACAAAAAATTACAAAGAGTGAC------------G--CA
droEre2	scaffold_4512:1151203-1151431 +		TTT-AATTTATTGTGAACTTTCGCTACATGTAGACTGGTTGTG----------ATCGTATTTGTGATCGTTTT----TTTT---ATTTATTTCCCGA------GCC---GA--------------TCGTT--TATGATTATTA---------------CAAA--------------------------------------------------------------------------------TATTAAACATCTTTGGTATCTTTAAAATGAGTTT------TCATTTTGG---TGTATTGGCCCTCGTTTT------------AACAGTTTTCACAGCCTCTCTGTG---------TGCTGAAGAAAAAATCACAAAGGATGACG---TTACGAAAG--CA
droYak3	4:150434-150675 -		TTT-ATTTTATTGTGAACTTTCGCTTCATGTAGACTGGCT------------AATTCCAGTTGTGTTCGTTTT----TTGT---AATTCTTACTTGG------GCC---GATATTAT--TTT-ACTCGTG--TATTAT---TACAA--------ATTACATA--------------------------------------------------------------------------------AATTAAACATCTTTGAAATCTTTAAAATGAGTTT------TCATTTTGC---TGTATGTGCCCTCATTTT------------GACAGCCTTGACAGTCTCTCTGTG---------TGCTGAACAAAAAATTACACAGGATGACG---CTACGAAAG--CA
droEug1	scf7180000406964:125159-125363 +		TTT-TACTTGTTGTGAACTTTCGCTACAGGCAGACTGTTTAGGCGCTTG----ATTCCGTTTGCGTTTTTT-C----TTAT---ATTTATAAATCGT------GACAA---A------------------------------------------TTTATAAA--------------------------------------------------------------------------------ATTTAAAAATTTCAAGCACATTTAAAATGAGCTT------TAATTTTGG---TATTTTGATCA---TTAT------------AATAACTATAATAGCTTGTGTTAA---------AGCTGAGCA---------------TGACG---ATACCAATG--CT
droBia1	scf7180000302087:145222-145466 -		TTT-CATTTATTGTTAACTTTCGCTACATGCAGACTGGTTG----------------------TGTTCAATTG----TAGT---AGTTAAAACTTGT------GACCA---AATTCT--TTTTAG---TTTTAATCATAA--------------TTTAAAAAG-------------------------------------------------------------------------------GACTGCCGCTTTTCTGGATCTGTAAAATGGGTTTCCATTTTCATTTTGA---TATTTTGCTCCTCATTTT------ACT---CTTAACTCTAATAGCTCCTTTTTGTATT---GCGGCTGAACAAAAAGTGTTGAAAGATGAAA---CTGCCAATG--TT
droTak1	scf7180000415607:3648-3894 +		TTT-CATTAATTGTGAACTTTCGCTACATGCAGACTGGTT------------GATTCCAACTGTGTTCATTAC----CTTT---ATTAAAACCTCGA------GAC---GAAGGTTT--TTA-AAAAATTTGTATGATAATTT--------------AAAAAG--------------------------------------------------------------------------------GTT--GCAACACTG----CTTTAAAATGGGATTTCATTTTCATTTTGC---TATTTTGCCCCTCATTTT------------AACAACTATAATAGCTCCTTTTTATATT---GAGGCTGAACAAATAATTACGAAGGATGAAG---CTACCAATG--TT
droEle1	scf7180000491238:1317946-1318193 -		CTT-AATTTATCTTTAACTTTCGCTACATACAGACTGGTTTAGCGCTTG----GTTTCTTTTGTGTTAATTTC----CACT---ATTGTTAACTCGT------GACAAAGATAA--A--TTT-GATTGTT--TGTGATAA-------------------------------------------------------------------------------------------------------GCTGTAACTCATCATAATCTTTAAAATGAGTTTTTGTTTTAATTTTGC------AATTGTTGCAACTTT------------AGCAACATTAATACCGTTTTTTTGTACT---GGAGCTGAACAAAAACTTGCGATAGACGAAG---CTGCCAATG--GT
droRho1	scf7180000777989:27011-27253 -		TTT-AATGTATCGTAAACTTTCGCTTTATACAGACTGGTTTAGCGCTTG----ATTTCATTTCTGTTAATCTC----TACC---ATTTATAACCCGT------GACAA----ATTTT--TTT-GGCTGTT--TATGATTAAC-------------------------------------------------------------------------------------------------------------TCCACACAATCTTTAAAATGAGTTTTAATTTTAATTTTGC---TATTGTTGTTCTTACGTT------------AACAACTTTAACAGCTTTTTTTTGTACT---GGCGCAGAACAAAAAATTACGACAGAAGAAA---CTGCCAATG--GT
droFic1	scf7180000454086:204807-205029 +		CTT------ATTGTAAACTTTCGCTACATGAAGACTGGTTCAACGCGTA----AATCCATTCGTATTAAATTG----TTGT---AAT---TTTCCAA------TAGAA----AGTTGTACTT-AGTTGTT--TCTGATAATTTGAA-------GTTATTA-----------------------------------------------------------------------------------------------------AATTAAAATGAGTTT------CAAGTTCGC---TTTTGCGCTTTTAACTAT------------AACTACTTTATTAACGTCATTTTGCACT---GGGTCCGAAAAAAT---------AGATGAAA---CTGCCAAAA--CT
droKik1	scf7180000298373:6788-7041 +		TTC-AATTTATTGTGAACTTTCGCTGCACACAGACTTAACT-----------TGTCGCAATTGCTGCCATTCAGTGG---TAATATT---TTTGCAATATATTGAAACAAATAAATT--TCT-ATGTGTG--TAT--T---CATGAATTTCTGACCCGTAA-------------------------------------------------------------------------------------AGGCATCTCTT------AAAAAATGAGCATCCGTTTTCACTTTGT---TATTCTGGCCTTGGCTAT------------ACCAACTTTTATGGCTCCTTTTCTTAGT---GGAGCTGAAAAAAATGTTGA---------AGTTATGGATAAAA--CT
droAna3	scaffold_13010:468254-468473 +		TTT-CATTTAAATTCAACTTTCGCTTGATTTAGACTAGTTAAGAATTCG----CTACCACTTCGATTGATCTA----CAGT---GCTAATAT-----------------------------------------------------------------------CTATTTCCCATT---------------------------------------------------TAATAT----------CCCTATGTATTATTAGGTCTATTAAAATGAATGT------TATTTTTGG---TTTTTTTGTCCTTACAAT------------AACCAG---------CCCATTAATTATC---GTGGCTGATAAAAAGCTTGAGAAAGATGAAG---CCAGCAATA--GT
droBip1	scf7180000395578:4882-5104 -		TTC--ATTTAAATTTAACTTTCGCTCGATTCGGACTAGTGAAGAACTCG----CTAC-------ATACT-----------------------------------------------------------------------------------------------------TCAATTGA---------------CATACACGGCATAGATATTATCTAATCATCATTTAATCATTATATGAAA----------CATTAGGCCTTTAAAAATGAATGTTTTT------TTT-----TATTTTTGCCCTAACAAT------------GACCAG---------TCCATTAATTATG---GCGACTGAAAAGAAAATTGAAAAAGATGAAG---CCAGCAATG--AT
dp5	Unknown_group_24:4232-4496 -		TCTCAATTTGTTTTTAACTTTCGCTGCAAACGGACAAATGT-----TTTGTTGATTTCC-------------------AGT---GTTACTA-C----------------------------------------------------------------------TCTTAATCCAATTGTTGTTATGGTCGATTTCATTTACGGC--TGCTAATATCAAAACGCGATTT---CAGTTTTAGAAA----------CTTCTAGTTTGCCAGAATGAATGCCCAT------CTTACACTTATTTTGGCTCTTGCCAT------------AACAACTATTATGGTCCCTTTTATTGCT---GGGGCTGACCAAAAATTGGCATCAGATGAGA---CAAATAGTGATGG
droPer2	scaffold_51:115064-115328 -		TCTCAATTTGTTTTTAACTTTCGCTGCAAACGGACAAATGT-----TTTGTTGATTTCC-------------------AGT---GTTACTA-C----------------------------------------------------------------------TCTTAATCCAATTGTTGTTATGGTCGATTTCATTTGCGGC--TGCTAATATCAAAACGCGATTT---CAGTTTTAGAAA----------CTTCTAGTTTGCCAGAATGAATGCCCAT------CTTACACTTATTTTGGCTCTTGCCAT------------AACAACTATTATGGTCCCTTTTATTGCT---GGGGCTGACCAAAAATTGGCATCAGATGAGA---CAAATAGTGATGG
droWil2	scf2_1100000004943:942271-942275 +		ACG-AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6498:1649232-1649494 +		TTTCAATTCGATGTTTACTTTCGCTTGAACCGGACTCGTTTCGGAATTGGTCGGCGTTC---GGAATCGTC--------GA---TCTGAACT-----------------------------------------------------------------------GAATTTCGTA---TTCATTGCTGTCGTTTTTCTTGTTGTT--TGCCGTTCACGAAGAGAGGGGA---TA----------AACAGAA-------------CGAAAAATGAATAAGCTA------ATAACAGTTTTAGCTGGTTTCACCATGGCCTTTCTATTGGTACCTTCCATTGCCTTGGCGGA---------TACCGAAAAAAACGCCTCGAATGATGAG------CAAAAAG--AT
droGri2	scaffold_14822:325767-325993 +		TTTCAATTCGGCGTTTACTTTCGCTTGAAGCAGACTCGTTTCGGAACCG----TT-------GTCTGCATTTG----TTGT---TGTTATTT-------------------------------------------------------------------------------------------------------------------------GTCTGTCATAAATA---CTGAAACTGATA----------TTTTATTTGTTTAAAAATGAATACATTT------AATTCACTGCTAATTGGCTGCGCTTT------------GGCTTTGGTGCTGGTCCCATCCATTGGCTGGGCAGCTGAGAAAACCGCTACGAATGAGGAGC---CGAAAACAG--AT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TTT-AATTTATTGTGAACTTTCGCTTCATTTAGACTGGTTAGGTGGTTGGTTAATTCCATTTGTCTTCGTTTTTTTG---TATTATT---TTCGCGA------AGG---GATAATTT--TTT-AATCGTT--TATGATTATTAAAA-------ATTTACAAA--------------------------------------------------------------------------------CAACTATCATCTTTGGAATCTTAAAAATGAGTTT------TCAATTTGC---CGTACTGACCCTTATCTT------------AACAGCCTTCACAGTCTCTTTGTG---------TGCTGAACAAAAAATTTCAAAGGGTGAC------------G--GA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....AATTTATTGTGAACTTTCGCT.........................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AATTTATTGTGAACTTTCGCTT........................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TTCGCTTCATTTAGACTG.............................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TTCGCTTCATTTAGACTGGTTAGGTGGT...................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................ACTGGTTAGGTGGTTGGT...............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................TTCATTTAGACTGGTTAGG.......................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...................TTCGCTTCATTTAGACTGGTT..........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................T------TCAATTTGC---CGTACTGACC..................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CATTTAGACTGGTTAGGTGGTT..................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....AATTTATTGTGAACTTTCGCTTCA......................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TGAACTTTCGCTTCA......................................................................................................................................................................................................................................................................................................................................................................................	15	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TTT-AATTTATTGTGAACTTTCGCTTAACTTAGACTGGTTAGGTGGTTGGTTAATTCCATTTGTCTTCGTTATTTTG---TATTATT---TTCGCGA------AGG---GATAATTT--TTT-AATCGTT--TGTGATTATTAAAA-------ATTTACAAA---------------------------------------------------------------------------------------C--AACTGGAATCTTAAAAATGAGTTT------TCAATTTGC---CGTACTGACCCTTATCTT------------AACAGCCTTCACAGTCTCTCTGTG---------TGCTGAACAAAAAATTTCTAAGGGTGAC------------G--GA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................CGCGA------AGG---GATAATTT--TT.........................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
.............................TTAGACTGGTTAGGTGGTTGGT...............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................AAAAATTTCTAAGGGTGAC------------.....	19	1	1.00	1	0	0	0	1
...........................................................................................................................................ATTAAAA-------ATTTACAAA---------------------------------------------------------------------------------------C--AACTGG................................................................................................................................................	23	1	1.00	1	1	0	0	0
.....ATTTATTGTGAACTTTCGCTTAACT....................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1
...........................ACTTAGACTGGTTAGGTGGT...................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1
.........................TAACTTAGACTGGTTAGGT......................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1

dm3

TTT-AATTTAGTGTGAACTTTCGCTTCATTTAGGCTGGTTAGGTGGTTA----ATTCCATTTGTCTTCGTTCTTTTG---TATTATT---TTTACAA------AGC---GATAATAT--TTT-AATCGTT--TATGATTATTACAA-------TATAACAAA--------------------------------------------------------------------------------AAGTTAACATCTTTGGAATCTTAAAAATGAGTTT------TCATTTTGC---TGTACTGACCCTTATTTT------------AACAGCCTTCACAGTTTCTCTGTG---------TGCTGAACAAAAAATTACAAAGAGTGAC------------G--CA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................TAGGCTGGTTAGGTGGTT..................................................................................................................................................................................................................................................................................................................................................................	18	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................ATTTAGGCTGGTTAGGTGGT...................................................................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................AGGTGGTTA----ATTCCATTTGTCTTCGT............................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................CAAA--------------------------------------------------------------------------------AAGTTAACATCTTTG.................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................AGGCTGGTTAGGTGGTTA----.............................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TTCATTTAGGCTGGTTAGG.......................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AGCCTTCACAGTTTCTCTGTG---------TGCT.........................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TCATTTTGC---TGTACTGACCCTTATTT...........................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................TCATTTAGGCTGGTTAGGTGGTTA----ATTCCA.......................................................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................TCACAGTTTCTCTGTG---------TGCTGAACAAA..................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GTG---------TGCTGAACAAAAAAT..............................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TTT-AATTTATTGTGAACTTTCGCTACATGTAGACTGGTTGTG----------ATCGTATTTGTGATCGTTTT----TTTT---ATTTATTTCCCGA------GCC---GA--------------TCGTT--TATGATTATTA---------------CAAA--------------------------------------------------------------------------------TATTAAACATCTTTGGTATCTTTAAAATGAGTTT------TCATTTTGG---TGTATTGGCCCTCGTTTT------------AACAGTTTTCACAGCCTCTCTGTG---------TGCTGAAGAAAAAATCACAAAGGATGACG---TTACGAAAG--CA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............................GTAGACTGGTTGTG----------ATCGT........................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	2	0	0
..............GAACTTTCGCTACATGTAGACTGGTT..........................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	1	0	0	1	0	0	0
...............................AGACTGGTTGTG----------ATCGTATTTGTGATC..............................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	1	0	0	0	1	0
.........................ACATGTAGACTGGTTGTG----------ATC..........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................AAGGATGACG---TTACGAAAG--CA	21	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................AGCCTCTCTGTG---------TGCTGAAG.....................................	20	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TTTGG---TGTATTGGCCCTCGT.............................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.....................CGCTACATGTAGACTGGTTGT........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.............................................................................TTTT---ATTTATTTCCCGA------GC.........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
....................................................................................ATTTATTTCCCGA------GCC---GA--------------TCGTT--..............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
......................GCTACATGTAGACTGGTTGTG----------ATCGTA.......................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................GTTTT------------AACAGTTTTCACAGCCT.............................................................	22	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................TTTCCCGA------GCC---GA--------------TCGTT--..............................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................GTATTGGCCCTCGTTTT------------AAC...........................................................................	20	1	1.00	1	0	1	0	0	0	0	0
.................CTTTCGCTACATGTAGACTTT............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.....................CGCTACATGTAGACTGGTTG.........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................ATGAGTTT------TCATTTTGG---T...........................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................AAAATCACAAAGGATGACG---TTACGAAA.....	27	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................GA------GCC---GA--------------TCGTT--TATGATTATTA---------------CAAA--------------------------------------------------------------------------------T...............................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
...................................TGGTTGTG----------ATCGTATTTG...................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................CTCGTTTT------------AACAGTTTTCACAGCCT.............................................................	25	1	1.00	1	0	0	0	0	1	0	0
...............................AGACTGGTTGTG----------ATCGTATTTGTGAT...............................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
......................................................................................TTATTTCCCGA------GCC---GA--------------TC...................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
.........................ACATGTAGACTGGTTGTG----------AT...........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................TTGG---TGTATTGGCCCTCGTT............................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.......................................TGTG----------ATCGTATTTGTGATC..............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
..................................CTGGTTGTG----------ATCGTATTTGTGATCGT............................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
..................TTTCGCTACATGTAGACTGGTTGT........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.........................ACATGTAGACTGGTTGTG----------ATCGT........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................CTCTGTG---------TGCTGAAGAAAAAATC.............................	23	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................TTTGG---TGTATTGGCCCTCGTT............................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................ATCACAAAGGATGACG---TTACGAAAG--C.	26	1	1.00	1	0	0	0	0	1	0	0
.....................CGCTACATGTAGACTGGTTGTG----------.............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TTTAAAATGAGTTT------TCATTTTGG---TGT.........................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
.....................................GTTGTG----------ATCGTATTTGTGATC..............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
................................................................................T---ATTTATTTCCCGA------GCC---GA--------------TCGTT--TATGA.........................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	1	0	0
................................GACTGGTTGTG----------ATCGTATTTGTGAT...............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................GCCTCTCTGTG---------TGCTGAAGA....................................	20	1	1.00	1	0	0	0	0	1	0	0
...................TTCGCTACATGTAGACTGGT...........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.......................CTACATGTAGACTGGTTGT........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.......................CTACATGTAGACTGGTTGTG----------ATC..........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................CACAAAGGATGACG---TTACGAAAG--CA	25	1	1.00	1	0	0	0	0	1	0	0

droYak3

TTT-ATTTTATTGTGAACTTTCGCTTCATGTAGACTGGCT------------AATTCCAGTTGTGTTCGTTTT----TTGT---AATTCTTACTTGG------GCC---GATATTAT--TTT-ACTCGTG--TATTAT---TACAA--------ATTACATA--------------------------------------------------------------------------------AATTAAACATCTTTGAAATCTTTAAAATGAGTTT------TCATTTTGC---TGTATGTGCCCTCATTTT------------GACAGCCTTGACAGTCTCTCTGTG---------TGCTGAACAAAAAATTACACAGGATGACG---CTACGAAAG--CA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................................................................................................................................................................................................ATGAGTTT------TCATTTTGC---TGTATGT.....................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................AAATTACACAGGATGACG---CTAC.........	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................ATGTAGACTGGCT------------AATTCCAGTTGTGT................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................GAACAAAAAATTACACAGGATGA..................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................CATTTT------------GACAGCCTTGACAGT...............................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

TTT-TACTTGTTGTGAACTTTCGCTACAGGCAGACTGTTTAGGCGCTTG----ATTCCGTTTGCGTTTTTT-C----TTAT---ATTTATAAATCGT------GACAA---A------------------------------------------TTTATAAA--------------------------------------------------------------------------------ATTTAAAAATTTCAAGCACATTTAAAATGAGCTT------TAATTTTGG---TATTTTGATCA---TTAT------------AATAACTATAATAGCTTGTGTTAA---------AGCTGAGCA---------------TGACG---ATACCAATG--CT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTT-CATTTATTGTTAACTTTCGCTACATGCAGACTGGTTG----------------------TGTTCAATTG----TAGT---AGTTAAAACTTGT------GACCA---AATTCT--TTTTAG---TTTTAATCATAA--------------TTTAAAAAG-------------------------------------------------------------------------------GACTGCCGCTTTTCTGGATCTGTAAAATGGGTTTCCATTTTCATTTTGA---TATTTTGCTCCTCATTTT------ACT---CTTAACTCTAATAGCTCCTTTTTGTATT---GCGGCTGAACAAAAAGTGTTGAAAGATGAAA---CTGCCAATG--TT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTT-CATTAATTGTGAACTTTCGCTACATGCAGACTGGTT------------GATTCCAACTGTGTTCATTAC----CTTT---ATTAAAACCTCGA------GAC---GAAGGTTT--TTA-AAAAATTTGTATGATAATTT--------------AAAAAG--------------------------------------------------------------------------------GTT--GCAACACTG----CTTTAAAATGGGATTTCATTTTCATTTTGC---TATTTTGCCCCTCATTTT------------AACAACTATAATAGCTCCTTTTTATATT---GAGGCTGAACAAATAATTACGAAGGATGAAG---CTACCAATG--TT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTT-AATTTATCTTTAACTTTCGCTACATACAGACTGGTTTAGCGCTTG----GTTTCTTTTGTGTTAATTTC----CACT---ATTGTTAACTCGT------GACAAAGATAA--A--TTT-GATTGTT--TGTGATAA-------------------------------------------------------------------------------------------------------GCTGTAACTCATCATAATCTTTAAAATGAGTTTTTGTTTTAATTTTGC------AATTGTTGCAACTTT------------AGCAACATTAATACCGTTTTTTTGTACT---GGAGCTGAACAAAAACTTGCGATAGACGAAG---CTGCCAATG--GT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTT-AATGTATCGTAAACTTTCGCTTTATACAGACTGGTTTAGCGCTTG----ATTTCATTTCTGTTAATCTC----TACC---ATTTATAACCCGT------GACAA----ATTTT--TTT-GGCTGTT--TATGATTAAC-------------------------------------------------------------------------------------------------------------TCCACACAATCTTTAAAATGAGTTTTAATTTTAATTTTGC---TATTGTTGTTCTTACGTT------------AACAACTTTAACAGCTTTTTTTTGTACT---GGCGCAGAACAAAAAATTACGACAGAAGAAA---CTGCCAATG--GT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTT------ATTGTAAACTTTCGCTACATGAAGACTGGTTCAACGCGTA----AATCCATTCGTATTAAATTG----TTGT---AAT---TTTCCAA------TAGAA----AGTTGTACTT-AGTTGTT--TCTGATAATTTGAA-------GTTATTA-----------------------------------------------------------------------------------------------------AATTAAAATGAGTTT------CAAGTTCGC---TTTTGCGCTTTTAACTAT------------AACTACTTTATTAACGTCATTTTGCACT---GGGTCCGAAAAAAT---------AGATGAAA---CTGCCAAAA--CT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTC-AATTTATTGTGAACTTTCGCTGCACACAGACTTAACT-----------TGTCGCAATTGCTGCCATTCAGTGG---TAATATT---TTTGCAATATATTGAAACAAATAAATT--TCT-ATGTGTG--TAT--T---CATGAATTTCTGACCCGTAA-------------------------------------------------------------------------------------AGGCATCTCTT------AAAAAATGAGCATCCGTTTTCACTTTGT---TATTCTGGCCTTGGCTAT------------ACCAACTTTTATGGCTCCTTTTCTTAGT---GGAGCTGAAAAAAATGTTGA---------AGTTATGGATAAAA--CT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TTT-CATTTAAATTCAACTTTCGCTTGATTTAGACTAGTTAAGAATTCG----CTACCACTTCGATTGATCTA----CAGT---GCTAATAT-----------------------------------------------------------------------CTATTTCCCATT---------------------------------------------------TAATAT----------CCCTATGTATTATTAGGTCTATTAAAATGAATGT------TATTTTTGG---TTTTTTTGTCCTTACAAT------------AACCAG---------CCCATTAATTATC---GTGGCTGATAAAAAGCTTGAGAAAGATGAAG---CCAGCAATA--GT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................................................................................................................................................................................................................................................................AAGCTTGAGAAAGATGAAG---CCA..........	22	1	2.00	2	0	0	0	0	0	2
...............AACTTTCGCTTGATTTAGACTAGC...........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
........................................AAGAATTCG----CTACCACTT....................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TTAATTATC---GTGGCTGATAAA...................................	21	1	1.00	1	1	0	0	0	0	0
...............................................................GATTGATCTA----CAGT---GCTAATA.......................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.............................TTAGACTAGTTAAGAATTCG----CT...........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1

droBip1

TTC--ATTTAAATTTAACTTTCGCTCGATTCGGACTAGTGAAGAACTCG----CTAC-------ATACT-----------------------------------------------------------------------------------------------------TCAATTGA---------------CATACACGGCATAGATATTATCTAATCATCATTTAATCATTATATGAAA----------CATTAGGCCTTTAAAAATGAATGTTTTT------TTT-----TATTTTTGCCCTAACAAT------------GACCAG---------TCCATTAATTATG---GCGACTGAAAAGAAAATTGAAAAAGATGAAG---CCAGCAATG--AT	Size	Hit Count	Total Norm	Total
No Reads

dp5

TCTCAATTTGTTTTTAACTTTCGCTGCAAACGGACAAATGT-----TTTGTTGATTTCC-------------------AGT---GTTACTA-C----------------------------------------------------------------------TCTTAATCCAATTGTTGTTATGGTCGATTTCATTTACGGC--TGCTAATATCAAAACGCGATTT---CAGTTTTAGAAA----------CTTCTAGTTTGCCAGAATGAATGCCCAT------CTTACACTTATTTTGGCTCTTGCCAT------------AACAACTATTATGGTCCCTTTTATTGCT---GGGGCTGACCAAAAATTGGCATCAGATGAGA---CAAATAGTGATGG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................GCTGCAAACGGACAAATG..........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.................CTTTCGCTGCAAACGGACA..............................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..................TTTCGCTGCAAACGGACAAATG..........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................TACACTTATTTTGGCTCTTGCC............................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................ACGCGATTT---CAGTTTTAGAAA----------CT....................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...................TTCGCTGCAAACGGACAAATGT-----T...................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................CGCTGCAAACGGACAAATG..........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................ATTTACGGC--TGCTAATATC...........................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................ATGGTCCCTTTTATTGCT---GG.............................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................TGAATGCCCAT------CTTACACTTATTTTGGC...................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................AGTTTGCCAGAATGAATGCCCAT------CTT.................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
....................................AATGT-----TTTGTTGATTTCC-------------------AGT---G.............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................AAATTGGCATCAGATGAG.................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GTTTGCCAGAATGAATGCCCAT------CTT.................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................TCATTTACGGC--TGCTAATATCAAAACG.....................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................CTTTCGCTGCAAACGGACAAATGT-----T...................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................CTTACACTTATTTTGGCTCTTGC.............................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................CCAATTGTTGTTATGGTCGATT..................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0

droPer2

TCTCAATTTGTTTTTAACTTTCGCTGCAAACGGACAAATGT-----TTTGTTGATTTCC-------------------AGT---GTTACTA-C----------------------------------------------------------------------TCTTAATCCAATTGTTGTTATGGTCGATTTCATTTGCGGC--TGCTAATATCAAAACGCGATTT---CAGTTTTAGAAA----------CTTCTAGTTTGCCAGAATGAATGCCCAT------CTTACACTTATTTTGGCTCTTGCCAT------------AACAACTATTATGGTCCCTTTTATTGCT---GGGGCTGACCAAAAATTGGCATCAGATGAGA---CAAATAGTGATGG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................GCTGCAAACGGACAAATG..........................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	2	0	0	0	1	0
........................................................................................................................................................................ATCCAATTGTTGTTATGGTC......................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
..................................CAAATGT-----TTTGTTGATTTCC-------------------AGT---GTT...........................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	2
........................TGCAAACGGACAAATGT-----T...................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................ATCAGATGAGA---CAAATAGT.....	19	1	1.00	1	0	0	1	0	0	0
....................................................................................GTTACTA-C----------------------------------------------------------------------TCTTAATCCAATTGTTGT.............................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................AATCCAATTGTTGTTATG.........................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..........TTTTTAACTTTCGCTGCAAAC...................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................................T-----TTTGTTGATTTCC-------------------AGT---GT............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
....................................................................................GTTACTA-C----------------------------------------------------------------------TCTTAATCCAATT..................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................CGATTTCATTTGCGGC--TGCC.................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0

droWil2

ACG-AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droMoj3

TTTCAATTCGATGTTTACTTTCGCTTGAACCGGACTCGTTTCGGAATTGGTCGGCGTTC---GGAATCGTC--------GA---TCTGAACT-----------------------------------------------------------------------GAATTTCGTA---TTCATTGCTGTCGTTTTTCTTGTTGTT--TGCCGTTCACGAAGAGAGGGGA---TA----------AACAGAA-------------CGAAAAATGAATAAGCTA------ATAACAGTTTTAGCTGGTTTCACCATGGCCTTTCTATTGGTACCTTCCATTGCCTTGGCGGA---------TACCGAAAAAAACGCCTCGAATGATGAG------CAAAAAG--AT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...................TTCGCTTGAACCGGACTCGTT..........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
..........................................................................................CT-----------------------------------------------------------------------GAATTTCGTA---TTCATTGCTGTCGTC...................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................AAAAAACGCCTCGAATGATGAG------C..........	23	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................................................TCACGAAGAGAGGGGA---TA----------AACAGAA-------------CG..........................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................CCGTTCACGAAGAGAGGGGA---TA----------AACAGA..........................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0
................ACTTTCGCTTGAACCGGACT..............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................AAAACGCCTCGAATGATGAG------C..........	21	1	1.00	1	0	0	0	0	1	0

droGri2

TTTCAATTCGGCGTTTACTTTCGCTTGAAGCAGACTCGTTTCGGAACCG----TT-------GTCTGCATTTG----TTGT---TGTTATTT-------------------------------------------------------------------------------------------------------------------------GTCTGTCATAAATA---CTGAAACTGATA----------TTTTATTTGTTTAAAAATGAATACATTT------AATTCACTGCTAATTGGCTGCGCTTT------------GGCTTTGGTGCTGGTCCCATCCATTGGCTGGGCAGCTGAGAAAACCGCTACGAATGAGGAGC---CGAAAACAG--AT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..................................CTCGTTTCGGAACCG----TT-------GTCTGCA.............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0

dsi_5867

4:124676-124825 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-14.3	-14.2	-14.1