ID:

dsi_5847

 Coordinate:

3l:8291459-8291535 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-10.2 -10.2 -10.0

Flybase annnotation

exon [3l_8290913_8291458_-]; CDS [3l_8290913_8291458_-]; CDS [3l_8291536_8292203_-]; exon [3l_8291536_8292318_-]; intron [3l_8291459_8291535_-]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------##################################################
CAGTACGCACTGAGACGTACCAATGAAGCGCAGCCCAACAGAAAACTGAGGTAATGGAAATAGTCAAGCAACAGGCGACTCTGTTAGACTAGGAAACGTACATCAACTAACTTAACTTTTGTTACAGCTCCAAGCCCCAGGTTTTGAAGCTGGGCGTTAACAAATCCCTGAGCATGG
**************************************************(((.......(((((.((((..((....)).)))).))))).......)))...........((((....))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
...................................................................................TTAGCCTAGGAAACGTACATCAACTA.................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0
.........................................................................GGCGACTCTGTTAGACTAGGAAACGT.............................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................GTTTTGAAGCTGGGCGTTAACAAAACA.......... 27 2 1 1.00 1 0 1 0 0 0 0 0
.........................................................................AGCGACTCTGTTAGACTAGGAAACGT.............................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................AAGCAACAGGCTACTC................................................................................................ 16 1 3 0.33 1 0 0 0 1 0 0 0
..........................................................................................................................................AGGTTTTGAAGCAGGG....................... 16 1 5 0.20 1 0 0 0 0 1 0 0
..............................................................................CCCTGTTAGAGTAGGA................................................................................... 16 2 15 0.07 1 0 0 0 0 1 0 0
.........................................................................................................................................................TCGTTAAGAAATCCGTGAG..... 19 3 20 0.05 1 0 0 0 0 0 1 0
..................................................GTAATGGAAGTTGTCGAGC............................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 1 0
...GACGCAATGAGACGTA.............................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

GTCATGCGTGACTCTGCATGGTTACTTCGCGTCGGGTTGTCTTTTGACTCCATTACCTTTATCAGTTCGTTGTCCGCTGAGACAATCTGATCCTTTGCATGTAGTTGATTGAATTGAAAACAATGTCGAGGTTCGGGGTCCAAAACTTCGACCCGCAATTGTTTAGGGACTCGTACC
**************************************************(((.......(((((.((((..((....)).)))).))))).......)))...........((((....))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
....................................................................................................................................................CGACCGGCGATTGTTTAGGTA........ 21 3 6 0.17 1 1 0 0
.....................................................................................................................................CGGGGTCCAAAACGTC............................ 16 1 6 0.17 1 0 1 0
.....................................................................................................................................CGGGGCCCAAAACGTCGCC......................... 19 3 14 0.07 1 0 0 1

Generated: 04/24/2015 at 10:48 AM