ID:

dsi_5824

 Coordinate:

3r:10720867-10721016 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-2.5 -2.1

Flybase annnotation

CDS [3r_10720186_10720878_-]; five_prime_UTR [3r_10720879_10721024_-]; exon [3r_10720186_10721024_-]

No Repeatable elements found

Sense Strand Reads

------------------------------------------################################################################################################################################################################################################################
ACTTACAAAATCGACTTAAAAAGCTTTCCGATATAACTTTTAGTCCCGTTTTTTGGGCTTTAACAGTCATTGCAATTTATCATTGTTACTGCGTGTTTCGATTACCGTTTTGTTAACCTTTTTTCGTGTCTTAAAAGTTGTTGAGTTGTATTTCTAATTTATGTTCAATTTCATTTCCAATTAATAACATGAAACTAAAGCCGGTTGATCGTAATGATGGCTCTGAAGATGAGAGCGAGGAGGAAATGCC
*******************************************************************************************************************************.......((((((.(((((((......)))))))....))))))..............***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M024
male body		 O002
Head
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
...............................................................................................................................GTCTTAAAAGTTGTTGAGTTGTATT.................................................................................................. 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0
.............................................................................................................................................................................................TGAAACTAAAGCCGGTTGATCGTAA.................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGCCGGTTGAACGCAATGAT................................ 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................TTTTTCGTGTCTTTAAAGTTATTGAGT........................................................................................................ 27 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................CTTAAAAGTTGTTGAGTT....................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................TAAAGCCGGTTGATCGTAATGATGGCTC........................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................ATGAAACTAAAGCCGGTT............................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................AATTTCATTTCCAATTAAT................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................ATGGCTCTGAAGATGAGAG............... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CGGAAGATGAGAGCGAGGA......... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................TAAAGCCGGTTGATCGTAATGATGA.............................. 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................AAAGTTGTTGAGTTG...................................................................................................... 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................ATTGATCGTAATGATGGCT............................ 19 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................ATGATGGCTCTGAAGATG................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGCCGGTTGATCGTAATGATGGCTCTT......................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................TTGGGTTGTATTTGTAATTTA......................................................................................... 21 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................ATAAGGATTGCTCTGAAGAT.................... 20 3 6 0.33 2 0 0 0 0 0 0 0 2 0 0
...................................................................................................................................................................................................................TAAGGATTGCTCTGAAGA..................... 18 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................TTATTGATCGTAATGATGGCT............................ 21 3 8 0.25 2 0 0 0 0 0 2 0 0 0 0
...................................................................................................................................TAGAAGTTGTTGAGTGGT..................................................................................................... 18 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................AATTCCAATTAATAACAT............................................................ 18 1 20 0.10 2 0 0 0 0 0 0 2 0 0 0
...................................................................................................................................................................................................TAAAGCCGGTTGACC........................................ 15 1 10 0.10 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AAAGACGGCTCTGAAGAT.................... 18 2 10 0.10 1 0 1 0 0 0 0 0 0 0 0
.......................................................................GCAGCTTATCGTTGTTACTG............................................................................................................................................................... 20 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AAACTAAAGCCCGCTGAT......................................... 18 2 13 0.08 1 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................TTGGCTCTGAAGATG................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AAGCCGGTTGCTCGAAA.................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGATGACTCTGAAGATC................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................TCTGAGGATGAAAGCGGGG.......... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TGAATGTTTTAGCTGAATTTTTCGAAAGGCTATATTGAAAATCAGGGCAAAAAACCCGAAATTGTCAGTAACGTTAAATAGTAACAATGACGCACAAAGCTAATGGCAAAACAATTGGAAAAAAGCACAGAATTTTCAACAACTCAACATAAAGATTAAATACAAGTTAAAGTAAAGGTTAATTATTGTACTTTGATTTCGGCCAACTAGCATTACTACCGAGACTTCTACTCTCGCTCCTCCTTTACGG
*****************************************************************.......((((((.(((((((......)))))))....))))))..............******************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 M025
embryo
..............................TATATTCACAATCAGGGCA......................................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................................TTGATTTCGACAAACTAGCATA.................................... 22 3 2 0.50 1 0 0 0 1 0 0 0
........................................................................................................GGCAAAACAATTGGCA.................................................................................................................................. 16 1 7 0.43 3 0 1 2 0 0 0 0
.......................................................................................................AGGCAAAACAATTGGCA.................................................................................................................................. 17 2 20 0.40 8 0 6 1 1 0 0 0
..............................TATAGTCACAATCAGGGCA......................................................................................................................................................................................................... 19 3 11 0.36 4 4 0 0 0 0 0 0
........................................................................................................GGCAAAACAATTGGC................................................................................................................................... 15 1 14 0.14 2 0 2 0 0 0 0 0
.......................................................................................................AGGCAAAACAATTGG.................................................................................................................................... 15 1 15 0.13 2 0 2 0 0 0 0 0
......................................................................................................AAGGCAAAACAATTGGCA.................................................................................................................................. 18 2 16 0.13 2 0 0 2 0 0 0 0
.........................................................................................................GCAAAACAATTGGCA.................................................................................................................................. 15 1 18 0.11 2 0 1 0 0 0 1 0
......................................................................................................AAGGCAAAACAATTGG.................................................................................................................................... 16 1 9 0.11 1 0 1 0 0 0 0 0
..........................................................................................................................................................................AGTAAAGGTTATGTATTGTAG........................................................... 21 3 9 0.11 1 0 0 1 0 0 0 0
........................................................................................................GGCAAAACAATTGGCAGA................................................................................................................................ 18 2 11 0.09 1 0 1 0 0 0 0 0
............................................................................................................................................................................................................AACTAGCATTACTAT............................... 15 1 16 0.06 1 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................TCCGGGACTGCTACTCTC............... 18 3 20 0.05 1 0 0 0 0 0 0 1
........................GAAGGCTATATTGAAG.................................................................................................................................................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0

Generated: 04/24/2015 at 10:47 AM