ID:

dsi_5821

 Coordinate:

3l:7550469-7550618 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-5.3

Flybase annnotation

CDS [3l_7550619_7550975_+]; exon [3l_7550619_7550975_+]; intron [3l_7549973_7550618_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAAATACATACGCAGTTGACCCATTTTATTTGTTGCTTGTCGTTGAGATTACTTCACGGTCAACTTTGTTGTTGATCTGACTATTTGTACATGTTCATTATGTATTCCGATAAACACTTGTTTACCAGTTGACTTTAAATATAAGCAGCAAATCTGTATGAAAATATTGCTAAATATCAGTCCAATATCCGAAAATCCAGCTTGCTGCGCCTGCCCTGCGCCAGTTGGTGTCCCAAAGTCGCGCCTACGC
*************************************************************************************************************.((......((((((...(((.......))).)))))).......))********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M053
female body
 O001
Testis
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
.............................TTGTTGCTTGTCGTTGAGATT........................................................................................................................................................................................................ 21 0 1 3.00 3 2 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GTCCCAAAGTCGCGCCTA... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................ATAAACACTTGTTTACCAG.......................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................GTTGGTGTCCCAAAGTCGCGC...... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................CTTGTCGTTGAGATTACTTCACG................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 1 0 0 0 0
.........................................................................................................................................AATATAAGCAGCAAATCTG.............................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................AAGCTTGCTGCGCCTGCCCTGCGC............................. 24 1 1 1.00 1 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................TGCCCTGCGCCAGTTGGT..................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................................ATTTGTACATGTTCATTATGTATTCC.............................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................TTATGTATTCCGATAAACACTTGTTTA.............................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................TTCACGGTCGGCTTTGTTGTTGATC............................................................................................................................................................................. 25 2 1 1.00 1 0 0 0 0 0 1 0 0
...............................GTTGCTTGTCGTTGAGATT........................................................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................CAAATCCAGCTTGCGTCGCC....................................... 20 3 7 0.14 1 0 0 0 0 0 0 1 0
.................................TGCTTGTCGTTGCGATA........................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 1 0
................................................................................................................................TTGACTTTAAATATTAGG........................................................................................................ 18 2 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

ATTTATGTATGCGTCAACTGGGTAAAATAAACAACGAACAGCAACTCTAATGAAGTGCCAGTTGAAACAACAACTAGACTGATAAACATGTACAAGTAATACATAAGGCTATTTGTGAACAAATGGTCAACTGAAATTTATATTCGTCGTTTAGACATACTTTTATAACGATTTATAGTCAGGTTATAGGCTTTTAGGTCGAACGACGCGGACGGGACGCGGTCAACCACAGGGTTTCAGCGCGGATGCG
**********************************************************************************************.((......((((((...(((.......))).)))))).......))************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
.........................................................................................GTACAAGTAATACATAAGGCT............................................................................................................................................ 21 0 1 3.00 3 3 0 0 0 0 0 0
...........................................................................................ACAAGTAATACATAAGGCTAT.......................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
..............................................................TGAAACAACAACTAGACTGATAAAC................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................TACAAGTAATACATAAGGCTAT.......................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................ACATGTACAAGTAATACATAAGGCTA........................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................ACAAATGGTCAACTGAAATTTATAT........................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0
............................................................................................CAAGTAATACATAAGGCTA........................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................GCAAGTAATACATAAGGCTAT.......................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0
............................................................................................TAAGTAATACATAAGGCTATTTGT...................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................................AGACTGATAAAGATGTACAAGTAATACAT.................................................................................................................................................. 29 1 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................................GAACAAATGGTCAACTGAAATTTATAT........................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................................GAACAAATGGTCAACTGAAATTTAT............................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0
.............................................................TTGAAACAACAACTAGACTGATAAACATGT............................................................................................................................................................... 30 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................TACAAGTAATACATAAGG.............................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................ACATGTACAAGTAATACATAAGGCTAT.......................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................................................CAGGTTATAGGCTTTTAGG.................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0
..........................................................................................TACAAGTAATACATAAGGCTA........................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0
....................................................AAGTGCCAGTTGATAC...................................................................................................................................................................................... 16 1 2 0.50 1 0 0 0 0 1 0 0
................................................................................................................................................................................................................................AACCGCAGGGTTTCAGAGC....... 19 2 2 0.50 1 0 0 0 0 0 1 0
...........................................................................AGACTGATAAACATC................................................................................................................................................................ 15 1 11 0.45 5 0 1 4 0 0 0 0
......................................................................................................................................................................................................................................AGGGTTCCAGCGCGG..... 15 1 4 0.25 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................AAGACTCGGACGGGAAGCGGT........................... 21 3 4 0.25 1 0 0 0 0 1 0 0
.....TCTATGCGGCAACTGGG.................................................................................................................................................................................................................................... 17 2 5 0.20 1 0 0 0 0 0 0 1
.............................................................................................................................................................................TATTGTCAGGTTATACGC........................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0
........ATGCGTCTAATGGGTAA................................................................................................................................................................................................................................. 17 2 10 0.10 1 0 0 0 0 0 0 1
.........................................................................CGAGACTGATAAACA.................................................................................................................................................................. 15 1 14 0.07 1 0 0 1 0 0 0 0
...........................................TCTCTAATGAAGTGCCTGA............................................................................................................................................................................................ 19 3 15 0.07 1 0 0 0 0 0 0 1
...................................................................................AAACGTGTACTAGTAATA..................................................................................................................................................... 18 2 18 0.06 1 0 1 0 0 0 0 0
.........................................................................CGAGACTGATGAACAT................................................................................................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0

Generated: 04/24/2015 at 10:22 AM