ID:

dsi_5794

 Coordinate:

2r:1163134-1163283 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.4 -4.4 -4.2

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DYakRCHelitron+

Sense Strand Reads

AAATGTGGGCGTGCCAGTTTTGGTCGGCTTTAGGACGTTAGAGTGGGAGTGTCAACATATTTTTTACAATTCGATAGAAATTTACATGACTAACTAACATTTTTCAAAAGTTTGGGCGTGACAATTTTGGGCGATTTGTGGGCGTTAGAGTGGCCGTGGCAAAATGGGTGAACAAACTCTTAACCTTCTAACTTTTATAGTTCCTGAGTTCTCGACGTTTATACGGACAGACGGACAAGTCCAGATTGGC
*****************************************************************************(((((..((((.((((((.............)).)))).))))..)))))..............************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 M023
head
 O001
Testis
 M024
male body		 M053
female body
 SRR902009
testis
....................................................................................................................................................................................................ATAGTTCCTGAGTTCTCGACGTT............................... 23 0 1 8.00 8 4 1 1 0 1 0 0 1 0 0 0
...........................................................................................................................................................................................................................TATACGGACAGACGGACAAGTCCAGATT... 28 0 1 5.00 5 0 0 1 4 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TACGGACAGACGGACAAGTCCAGATT... 26 0 1 4.00 4 2 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATAGTTCCTGAGTTCTCGACGTTTA............................. 25 0 1 3.00 3 2 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................TATACGGACAGACGGACAAGTCCAGA..... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................AAATTTACATGACTAACTAACATTTT................................................................................................................................................... 26 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0
...............................................................................................................................................................................................................................CGGACAGACGGACAAGTCCAGATT... 24 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................ACGGACAGACGGACAAGTCCAGATT... 25 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................GTGAACAAACCCTGAACC................................................................. 18 2 2 1.50 3 0 0 0 0 0 0 2 0 1 0 0
.........................................................................................................................CAATTTTGGGCGATTTGTGG............................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TCCTGAGTTCTCGACGTTTATACGGA....................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TCCTGAGTTCTCGACGTTTATA........................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TTGGGCATGACAGTTTTGGGCGATT.................................................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GTTTATACGGACAGACGGACAAGT.......... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................TAGGACGTTAGAGTGGGAGTGTC..................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CGGACAGACGGACAAGTCCAGATTGGC 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................TAGGACGTTAGAGTGGGAGTGTCAACA................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................TTTGGTCGGCTTTAGGACGTTAGAG............................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGAGTTCTCGACGTTTATACGGACA..................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................TCGGCTTTAGGACGTTAGAGTGGGAGT........................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTTATACGGACAGACGGACAAGTCC........ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................TAACATTTTTCAAAAGTTTGGGCGT................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................ATAGTTCCTGAGTTCTCGACGTTT.............................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................GACAATTTTGGGCGATTTGTGGGCGTT........................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CTGAGTTCTCGACGTTTATACGGATT..................... 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................TGGGCGATTTGTGGGCGTTA....................................................................................................... 20 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................TAGTTCCTGAGTTCTCGACGTT............................... 22 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................TTCAAAAGTTTAGGCGTGACAATTAA.......................................................................................................................... 26 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................TTAACATTTTTCAAAAGTTTGGGCGT................................................................................................................................... 26 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
....................................GTTAGAGTGGGAGTGTC..................................................................................................................................................................................................... 17 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................TTTGGGCGATTTGTGGGCGTTAGA..................................................................................................... 24 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................TTTTGGGCGATTTGTGGGCGT......................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
AAATGTGGGCGTGCCAGTTTTG.................................................................................................................................................................................................................................... 22 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATAGTTCCTGAGTTCTTGACGTTT.............................. 24 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................GGGCGATTTGTGGGC........................................................................................................... 15 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TAGAGAGGTCGTGGCAAAATGGGTA................................................................................ 25 3 8 0.25 2 0 0 0 0 0 2 0 0 0 0 0
..............................................................................................TAACATTTTTCAAAAGTTTGGGCGTGG................................................................................................................................. 27 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................TTAGAGAGGTCGTGGCAAAATGGGT................................................................................. 25 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................TAAACCTTCTAACTTTTATAGTTCC.............................................. 25 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
.........................GGCTTTAGGACGTTAGAG............................................................................................................................................................................................................... 18 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TACGGACAGACGGACAAG........... 18 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TCTCGACGTTTATACGGACAGACGG................ 25 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................TGTTAGAGAGGTCGTGGCAAAATGG................................................................................... 25 3 11 0.18 2 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................TAACATTTTTCAAAAG............................................................................................................................................ 16 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0
....................................GTTAGAGTGGGAGTGGCAACATA............................................................................................................................................................................................... 23 1 12 0.17 2 0 0 0 0 0 2 0 0 0 0 0
..................................................................................................................................................................................................TTATAGTTCCTGAGTTCTCGA................................... 21 0 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATAGTTCCTGAGTTCTCG.................................... 18 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CGTTTATACGGACAGACGGAC.............. 21 0 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................ATAGTTCCTGAGTTCT...................................... 16 0 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................TCAAAAGTTTGGGCGTG.................................................................................................................................. 17 0 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GACGTTTATACGGACAGACGGACC............. 24 1 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................CGTGAACAAACCCTGAACC................................................................. 19 3 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................TGTGGGCGTTAGAGTGG................................................................................................. 17 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................GTTAGAGTGGCCGTGGA.......................................................................................... 17 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTCATACGGACAGACGGACAAGTT......... 24 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ATACGGACAGACGGAC.............. 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.............................TTAGGACGTTAGATT.............................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................TCGACGTTTATACGGACA..................... 18 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTTACACCCGCACGGTCAAAACCAGCCGAAATCCTGCAATCTCACCCTCACAGTTGTATAAAAAATGTTAAGCTATCTTTAAATGTACTGATTGATTGTAAAAAGTTTTCAAACCCGCACTGTTAAAACCCGCTAAACACCCGCAATCTCACCGGCACCGTTTTACCCACTTGTTTGAGAATTGGAAGATTGAAAATATCAAGGACTCAAGAGCTGCAAATATGCCTGTCTGCCTGTTCAGGTCTAACCG
*************************************************************************************************************(((((..((((.((((((.............)).)))).))))..)))))..............***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR902008
ovaries
 M053
female body
 M025
embryo
 M024
male body
......................................................................................................................................................................................TGGAAGATTGAAAATATCAAGGAC............................................ 24 0 4 6.50 26 11 3 3 4 3 0 1 1 0 0
..............................................................................................................................................................................................TGAAAATATCAAGGACTCAAGAGC.................................... 24 0 1 4.00 4 3 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................TTGGAAGATTGAAAATATCAAGGAC............................................ 25 0 4 2.25 9 2 3 2 0 2 0 0 0 0 0
..........................................................................................................................................................................................AGATTGAAAATATCAAGGACTCAAGAGC.................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................AGATTGAAAATATCAAGGACTCAAG....................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AGGACTCAAGAGCTGCAAATATGCCT....................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CAAGGACTCAAGAGCTGCAAA.............................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................ATTGGAAGATTGAAAATATCAAGGAC............................................ 26 0 2 1.00 2 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................ATTGGAAGGTTTAAAATATCAAGGAC............................................ 26 2 3 0.67 2 0 0 2 0 0 0 0 0 0 0
...........................................................................................................................................CCCGCAATCTCACCGGCACCGTTT....................................................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.............GGTCAAAACCTGCCGAAGT.......................................................................................................................................................................................................................... 19 2 7 0.43 3 0 0 0 0 0 3 0 0 0 0
......................................................................................................................................................................................TGGAAGTTTGAAAATATCAAGGAC............................................ 24 1 5 0.40 2 2 0 0 0 0 0 0 0 0 0
.................................................ACAGTTGTCTAAAAAACGTTAC................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................AGCTGCAAATATGCCTGTCTGCCTGTT............ 27 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
...............................TCCTGCAATCTCACCCT.......................................................................................................................................................................................................... 17 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TTGGAAGATTGAAAATATCAA................................................ 21 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TTGAAGATTGAAAATATCAAGGAC............................................ 24 1 8 0.25 2 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................AAGATTGAAAATATCAAGGAC............................................ 21 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................GGAAGATTGAAAATATCAAGGAC............................................ 23 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................AGCTGCAAATATGCCTGTCTGCCTGT............. 26 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CTGCAAATATGCCTGTCTGCCTGT............. 24 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................TTGGAAGATTGAAAAT..................................................... 16 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................ATTTGGAAGATTGAAAATATCAAGGAC............................................ 27 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TTGGAAGATTGATCATATCAAGGAGT........................................... 26 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GAAGATTCAAAATATCAAGGAC............................................ 22 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................TGAAAATATCAAGGAC............................................ 16 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0
.................................................................................AATATACTGATTGTTTGTAACA................................................................................................................................................... 22 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTGAAAATATCAAGGAC............................................ 17 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................CCCACTTGTTAGAGA...................................................................... 15 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TGGAAGATTGAACATATCAAGGAC............................................ 24 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AGCTGCAAATATGCCTGCCTGCCTGT............. 26 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CGGAAGATTGAAAATATCAAGGAC............................................ 24 1 9 0.11 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GAGATTGAAAATATCAAGGAC............................................ 21 1 9 0.11 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................AGATTGAACATATCAAGGAC............................................ 20 1 9 0.11 1 0 0 1 0 0 0 0 0 0 0
.............GGTCAAAACCAGCCAAAGT.......................................................................................................................................................................................................................... 19 2 9 0.11 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................AGATTGAAAATATCAAGG.............................................. 18 0 9 0.11 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................GCTGCAAATATGCCTGTCTGACTGT............. 25 1 10 0.10 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................AGAGCTGCCAATATGCCTGTCTGCCT............... 26 1 10 0.10 1 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................ATATGCCTGTCTGCCTGT............. 18 0 10 0.10 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................TGGAAGATTGAAAATATCAAGAAC............................................ 24 1 11 0.09 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AGCTGCAAATATGCCTGTATGCCT............... 24 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AGAGCTGCAAATATGCCTGTCT................... 22 0 12 0.08 1 0 0 1 0 0 0 0 0 0 0
....................................................................................GTACGGATTGATTCTAAGA................................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................TGGAAGATTGAAAATATCAAGGAT............................................ 24 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CTGCAAATTTGCCTGTCTGACTGT............. 24 2 16 0.06 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................AGAGCTGCAAATATGCCTGT..................... 20 0 16 0.06 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AAATGCCTGTCTGCCTGT............. 18 1 18 0.06 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................ATGCCTGTCTGCCTGT............. 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AAAATGCCTGTCTGCCTG.............. 18 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................TTGATTGTAAAGAGT................................................................................................................................................ 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:1163084-1163333 - dsi_5794 AAATGTGGGCG--------TGCCAGTTTTGG-T--------CGGCTTTAGGACGTTAGAGTGGGAGTGTCAACA-----------------------TATTT--TTTACAATTCGATAGAAATTTACATGACTAACTAA--------------------------------------------------------------------------------CA--TT---------TTTCA-----------------AAAGTTTGGGCGTGACAATTTTGGGCGATTTGTGGGCGTTA---------------------------------------------------------------------GAGTGGCCGTGGCAAAATGGGTGAA-----------------------------------------CAAACTCTTAACCTTCTAACTTTTATAGTT--CCTGAGTTCTCGACGTTTATAC----G--------------------GACAGACGGACAAGTCCAGATTGGC
droSec2 scaffold_43:98863-99114 - AAATGTGGGCG--------TGCCAGTTTTGG-T--------CGGCTTTAGGACGTTAGAGTGGGAGTGTCAACA-----------------------TATTT--TTTGAAATTTGATAGAAATTTACATGACTAACTAA--------------------------------------------------------------------------------CA--TT---------TTTCA-----------------AAAGTTTGTGCGTGACAATTTTGGGCGATTTGTGGGCGTTA---------------------------------------------------------------------GAGTGGCCGTGGCAAAATGGGTGAA-----------------------------------------CAAACTCTTAACCTTCTAACTTCTATAGTTAACTCAGGAACTCGACGTTTATAC----G--------------------GACAGACGGACACGTCCAGATTGGC
dm3 chr2R:587171-587434 + AAATGTGGGCG--------TGGCAGTTTTTG-G--------CGGTTTTAGGGCGTTAGAGTGGGCGTTGAAATT-----------------------T-TTT--TTTTCAAATCAATAGAAATTTACAAGACTAAAA-------------------AAAATGTGAAAAA----------------------------ATATCA-------------ACACA--TT---------TTTTA-----------------TAAGTGTGGCCGTGACAGTTTTATGCGATTTGTGGGAGCTA---------------------------------------------------------------------GAGGGGTCGTGGCAACATGGGTCAGCAAACTT----------------------------------------------ACGCTGAATTTTATAGTT--CCTGAGATCTCGACTTTCATAC----G--------------------GACAGACGGAGAAGGCTAGATAGAC
droEre2 scaffold_4929:23363781-23364037 + ATATGTGAGCG--------TGACAGTTTTGG-G--------CGGTTTGTGGGCGGTAGAGTGGGCGTGGAAAAAAGA--------------------T-TTT--TTTACAAATCGATATATATTTACAAGACTTTTT-------------------T--------------------------------------------C-------------AA--CA--TT---------TTTCC-----------------AAAGTGAGGGCGTGACAGTTTTGCGCGGCTCGTGGGCGTTA---------------------------------------------------------------------GAGTGGGCGTGTCTC-----T------------------------------GAAAGCTGCA---TGCTTAATCTCATCATTCTAGTTTTTTTAGTT--CCTGAGATCGAGACGATCATAC----A--------------------GACAGACGAACAATGCCAGATCGAC
droYak3 v2_chrUn_754:8766-9030 - AAGTGTGGGCG--------TGGCAGCTTTGG-G--------CGGTTTGAGGGCGTTAAAGTGGGCGTTTCAAAAAG---------------------T-TTT--TTTCCAAATCAATAGAAATTTACAAGACCAACA-------------------CAAAAATGAAC-A----------------------------AGATCA-------------AAACA--TT---------TTTCA-----------------AAAGTGTGGGCGTGGCAGTTTTGGGCGGTTTGTGGGCGTTA---------------------------------------------------------------------GAGTGGGCGTGGCAACAT--------------------------------------------------GAATCTCAACTTTCTACCTTTTGTAGTT--CCTGAGATCTCGACGTTCATAC----G----------------GACGGACAGAAATACATGGCCAGATCGAC
droEug1 scf7180000409491:10572-10827 - AAATTTCAGCGA-------TTTTAGTTTTCG-T--------CGACTATTCATTTTTAGATTTGAA------T-A-----------------------TATT---TAGGT--TACCAAAGACATTTACAGTC---------------------------------------------------TTTTCGACCAAAAG------------------------------------------------------------AAATTTCAGCAATTTTAGTTTTCCGTGATTTGTAGGCGTTA---------------------------------------------------------------------GAGTGGGCGTGGAAGTTTGCTTA----------------------------AGAATCTTAA---TGCTAAATCTCAACCCTCTATCTCTTATATTT--CATGAGATCTCAGCGTTCATAC----GGA------------CAGACGGGCGAACGGACATGGCTTAATCGAC
droBia1 scf7180000302470:145062-145311 + AACTGTGACCA--------CCACAGTTTTGG-G--------CGGCTGTTGGGCGTTAAAGAGAGTGCGGCACAT-----------------------T-TTT--TTGGTCATTCGATAGGTATTGATGATT---------------------------------------------------TTTTC-------------------------------------------------------------TATCATAAAAACTATAGGC--TACATATTTTCGCGTATTGTG-GCGGCA---------------------------------------------------------------------GAGTGGACGTGGCACCCCACTGAAACAAACTT---------------------------------GCGGTGTTTGACTGTTCTAGCTCTTATAGTT--TCCGAGATCTTAGCGTTCATAC----G--------------------GACGGACGGACATGGCTAGTTCGAC
droTak1 scf7180000413000:4067-4340 - AAATGTAGGCGC-T-----GGCCAGGTTTAA-GCGTTTATTGGGTTTGTGGGCGTTAGAGTGGGCGTGGCAATT-----------------------TTT-TACTTGGCCAATCGATAGGTATTGACGAAGCGAATA-------------------C----------------------------------------ATATCAGTTACTATTTTCATAA-----------------------------TAGCTTCAAAAC--------------------------TGTGGGCGTTA---------------------------------------------------------------------GAGGGGGCTC---------------------------------------CTAGAATCTGCA---TGCAAAATGCCAATCTTCTAGCTTTTATAGTT--TCCGAGATCTCAGCGTTCATAC----GGACAGACAGACAGACAGACGGACAGACGGACATGGCTAGATCGAC
droEle1 scf7180000490124:2936-3211 + AAATATTAGCT--------CGA---TTTTG-------------------------AAAATTGGGTGTACCGATA-----------------------GATAT--GACGATACGATATAGATATGAACACAAC-------------------------------------------------------------------AACA-------------ACCCAACCTTCTAACATGTTTCA-----------------GA-GC---GACAGTACATACATTCACGATTTGTGGGCGTTA---------------------------------------------------------------------GAGTGGACGTGGCTCCG--------CAAACTTGTGCTGCCTGGGAACTACCAGAGTCTGCA---TGCCAAGTCCCAAATCTCTAGCTCTTATAGTT--TCCGAGATCTCGACGTTCATAC----AGA------------CGCACGCACAGACGGACATGGCTAGATCGAC
droRho1 scf7180000770177:61347-61613 + AAATGTAGGCGC-T-----AGCCAGGCTTAA-GCGTTTAATGAGTTTTTGGGCGTTAGAGTGGGCGTGGCAATC-----------------------TTT-TATTAGGCCAATCGATAGGTATTGACGAAACAAATA-------------------C----------------------------------------ATATCAATTA------------CA--AT---------TTTCA---------TAGCATCAAAACTGTGGC---CACAGCT---TGTGGCTTGTGGGCGTCA---------------------------------------------------------------------GAGGGGGCGTGGCACCATTTTG----------------------------------------------AAATGCCAATCTTCTAGCTTTTATAGTT--TCCGAGATCTCAGCGTTTATAC----G--------------------GACAGACGGACATGGCTAGATCGAC
droFic1 scf7180000453932:621800-622100 + GAATCTCGACT--------GGAC---------------------------AATGTTAAAGTAGGCGTGTCACTTAGCTTGAAACTTCTGTCGCTGCGTATTC--A--------CTACAAGAATCTACATGATTTATT-------------------CTAATAT--TC-TAGCTCATAGAGTTTTTTTTATTAAAATGATTGTA-------------AGAC-----------------AA-----------------AGTATTTGGACGGCACC--ACTTCGCTGTTTGTGAGCATAA---------------------------------------------------------------------AAATGGGCGTGACACAA-------ATATTCTT-----GCTTACGAGTAATAA----------------GAAGTTACATTTTTAATCTTTTATAATT--TCCGAGAATTTGACGTTCATAC----G----------------GACGGACAGACAGACATACATAGATCGAC
droKik1 scf7180000298822:6174-6260 + TAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAGAGTA-----------------------------------------TTCAGAGTTTCAATCAGTTAACTTTTAAA------CTGAG---TTTGCGTAGA------------------------AACTGACAGACGGACATGGCTAGATCGAC
droAna3 scaffold_13258:980360-980530 + AACATTTTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATA--CC---------TTCCT-----------------GA---ACAGGCGCTACAGAATTGTGCCATTTGTAGTGGTGG---------------------------------------------------------------------TTGAGGGAGTGGCGATTTATA------------------------------TGAGTTTTCA---TACAAAATCTTTTAGCTTTATTTCATATAGCC--TGTAAGTTGCACGCGTTTATAC----C--------------------GACAGACGGACATGGCTATATTACC
droBip1 scf7180000395289:4673-4907 - AAAATTAACGAACTGGTGATAGCACCTGATT-T--------CTGTTTTGGGGCG--GGAGTGGGCGTAACAAAA-----------------------TTT-TG-----AAATTTGTT----------------------------------------------------------------------------------------------------------------------------TTTCAGATATAT--------------------------------------------ACTAACCATAGAAAT------AGTTTGGCATCAACACATTTTCACAAAACCTGGGCATTT---------GAGGAG-------------------------------------------------TCTTCA---TGCCAAATCCTATAGCTCTATGTCTTATAGTC--TCTGAGTCTCTGACAGACG------------------------AACGGACAAACGGATATGGCTTTATCGGC
dp5 3:19706402-19706668 - GGTCC-------------------GATTT---------------------------AACAGGAGTGTGGATACCA----------------------AATTT--TTTTTCATTCTCTACGATTCTGCGTTTTTGATT---------------------------------------------------------------------------------------T------------------TCTCGTATCTTTAAAATTGTGGATGCCACAGATTTTCGTCCTTTGTGGGGGCGG---------------------------------------------------------------------AAGTGCGCGAGGCGATGTTTTGAAATATACTTGTAACAGTGACATATTACAGAAGTCTAGA---TACAAAATGTCGTTGTGCTAGCTCTTATAGGT--TTTGAGCACTAGGCGCTCATAG----G----------------GACGGACAAACAGATATGGCTCAATCGAC
droPer2 scaffold_67:16916-17120 - ACAGTT--------------------------------------------------------------------------------------------------TCTGCAGTTTGGTAGACGTGAACATTTCTTACGA-----------------------------------------------------------------------------------------------TTTTCGGACTTCGCATATCTTCAAAATCGTGGATGCCACAGTGCGTAACAGT---------------------------------------------------------------------------------------GCGTTATC----------------------------------ACAGGAGTCTGGA---AACAAATTTTGGCTTCTCTAGCTCTTATAGTA--TCTGAGATCTAGGCGCTTCTTGGGACGGA------------CAGACGGACAGACAGGCATGGCTCAATCGAC
droWil2 scf2_1100000004954:517469-517715 - CAGTTT----------------------TAT-T--------AATTTTTCGGGAGCGAAAGTGGGCGTGGCAAAA-----------------------TTT-TA-----AAA-A--AGATAAATCTGCGCGTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAAGCCAGTACACATTTCAAATTTGGTGTCTATAGCCTTTGAGAAAATCGTTTAATTTGCGATGCGTAAGGGGGCGTGGCAAAAATTGAAAATAAACTT------------------------------------GAACACCGTGACTCTAGCTCCTTTAGTC--TCCGAGATGCGGACTGACG------------------------GACAGCCGGGCGGACATGGCTAGATCGAC
droVir3 scaffold_12100:393071-393270 + ATTATTTACT-------------------------------------------------------------------------------------------------------------------------------AATATTGCCCAAAAAAAAGG----------------------------------------ATATCG----------------------------------------------------------------ATATCGATTTTTATCGATTTATTGGAAACG---------------------------------------------------------------------GAGTAAGTT-ATCGAATTTCGGAAATAAACTC---------------------------------GCCACTAGGAGCACCTACATCTCTTTTAGGT--TCTGAAATCCTTGCGTTCATACATACGGACGGACGGACAGACAGACAGACGGACGGACATGCCTAGATCGAC
droMoj3 scaffold_6498:889414-889628 - GACTATCTTCA--------TGAAACTTTTAGAA--------CGGTATCATAAGGTTGAAATGTGTGTA----------------------------------------------------------CAAGTCTCTAG-------------------T---------------ACTT-------------------------AAGA----------TA--CG--TT---------TTTAC-----------------AAA--------------------------TTGGGGTCG--A----------------------------------AAA------------TTTACAAATTG---------GCGTGGTTATCGTA---------------------------------------AATCTGTAGATTACAAAATTTAAAGTCTCTAGCTTTTATATTT--TCTGAGATCTCGGCGTTTATAC----G--------------------GACAGACGGACAGGGCTATATCGAC
droGri2 scaffold_15203:4046914-4047015 + GGCA----------------------------------------------------------------------------------------------------------AACTGGTATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAA-----------------------------------------CCAACTTGGAAGTCTCTAGCTTTTACAGTC--TCTGAGATATGCGTCTTCATAC----A----------------GACGGACAGACGGGCATGGCTATATCGAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAATGTGGGCG--------TGCCAGTTTTGG-T--------CGGCTTTAGGACGTTAGAGTGGGAGTGTCAACA-----------------------TATTT--TTTACAATTCGATAGAAATTTACATGACTAACTAA--------------------------------------------------------------------------------CA--TT---------TTTCA-----------------AAAGTTTGGGCGTGACAATTTTGGGCGATTTGTGGGCGTTA---------------------------------------------------------------------GAGTGGCCGTGGCAAAATGGGTGAA-----------------------------------------CAAACTCTTAACCTTCTAACTTTTATAGTT--CCTGAGTTCTCGACGTTTATAC----G--------------------GACAGACGGACAAGTCCAGATTGGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTT--CCTGAGTTCTCGACGTT.......................................................2318.00800001014011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAC----G--------------------GACAGACGGACAAGTCCAGATT...2815.00500000010400000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC----G--------------------GACAGACGGACAAGTCCAGATT...2614.00400000012001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTT--CCTGAGTTCTCGACGTTTA.....................................................2513.00300000002010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAC----G--------------------GACAGACGGACAAGTCCAGA.....2612.00200000002000000000
.......................................................................................................................AAATTTACATGACTAACTAA--------------------------------------------------------------------------------CA--TT---------TT............................................................................................................................................................................................................................................................................................................2612.00200000000000020000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----G--------------------GACAGACGGACAAGTCCAGATT...2412.00200000001000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----G--------------------GACAGACGGACAAGTCCAGATT...2512.00200000010010000000
...............................................................................................................................................................................................................................................................................CAATTTTGGGCGATTTGTGG.....................................................................................................................................................................................................................................................2011.00100000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--CCTGAGTTCTCGACGTTTATAC----G--------------------GA.......................2611.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--CCTGAGTTCTCGACGTTTATA...................................................2211.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATAC----G--------------------GACAGACGGACAAGT..........2411.00100000000001000000
...............................................TAGGACGTTAGAGTGGGAGTGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----G--------------------GACAGACGGACAAGTCCAGATTGGC2711.00100000001000000000
...............................................TAGGACGTTAGAGTGGGAGTGTCAACA-----------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
..........................TTTGG-T--------CGGCTTTAGGACGTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTTCTCGACGTTTATAC----G--------------------GACA.....................2511.00100000001000000000
................................T--------CGGCTTTAGGACGTTAGAGTGGGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATAC----G--------------------GACAGACGGACAAGTCC........2511.00100000001000000000
........................................................................................................................................TAA--------------------------------------------------------------------------------CA--TT---------TTTCA-----------------AAAGTTTGGGCGT...........................................................................................................................................................................................................................................................................2511.00100000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTT--CCTGAGTTCTCGACGTTT......................................................2411.00100000000100000000
.............................................................................................................................................................................................................................................................................GACAATTTTGGGCGATTTGTGGGCGTT................................................................................................................................................................................................................................................2711.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGTTCTCGACGTTTATAC----G--------------------GATT.....................2611.00100000000001000000
.....................................................................................................................................................................................................................................................................................TGGGCGATTTGTGGGCGTTA---------------------------------------------------------------------..........................................................................................................................................................................2020.50100000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTT--CCTGAGTTCTCGACGTT.......................................................2220.50100010000000000000
.....................................................GTTAGAGTGGGAGTGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1720.50100000000001000000
...................................................................................................................................................................................................................................................................................TTTGGGCGATTTGTGGGCGTTA---------------------------------------------------------------------GA........................................................................................................................................................................2420.50100000010000000000
..................................................................................................................................................................................................................................................................................TTTTGGGCGATTTGTGGGCGT.................................................................................................................................................................................................................................................2130.33100000001000000000
AAATGTGGGCG--------TGCCAGTTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.25100000000001000000
......................................................................................................................................................................................................................................................................................GGGCGATTTGTGGGC...................................................................................................................................................................................................................................................1540.25100000000001000000
........................................................................................................................................TAA--------------------------------------------------------------------------------CA--TT---------TTTCA-----------------AAAGTTTGGGCGTGG.........................................................................................................................................................................................................................................................................2740.25100000000010000000
..........................................GGCTTTAGGACGTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.20100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC----G--------------------GACAGACGGACAAG...........1850.20100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGACGTTTATAC----G--------------------GACAGACGG................2550.20100000000000010000
........................................................................................................................................TAA--------------------------------------------------------------------------------CA--TT---------TTTCA-----------------AAAG....................................................................................................................................................................................................................................................................................1660.17100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAGTT--CCTGAGTTCTCGA...........................................................2160.17100000000100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTT--CCTGAGTTCTCG............................................................1880.13100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTATAC----G--------------------GACAGACGGAC..............2190.11100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTT--CCTGAGTTCT..............................................................1690.11100000000001000000
............................................................................................................................................................................................................................................TCA-----------------AAAGTTTGGGCGTG..........................................................................................................................................................................................................................................................................1790.11100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTTTATAC----G--------------------GACAGACGGACC.............2490.11100000000000010000
..............................................................................................................................................................................................................................................................................................TGTGGGCGTTA---------------------------------------------------------------------GAGTGG....................................................................................................................................................................17200.05100000000010000000
.....................................................................................................................................................................................................................................................................................................GTTA---------------------------------------------------------------------GAGTGGCCGTGGA.............................................................................................................................................................17200.05100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAC----G--------------------GACAGACGGAC..............16200.05100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACGTTTATAC----G--------------------GACA.....................18200.05100000010000000000
droSec2
AAATGTGGGCG--------TGCCAGTTTTGG-T--------CGGCTTTAGGACGTTAGAGTGGGAGTGTCAACA-----------------------TATTT--TTTGAAATTTGATAGAAATTTACATGACTAACTAA--------------------------------------------------------------------------------CA--TT---------TTTCA-----------------AAAGTTTGTGCGTGACAATTTTGGGCGATTTGTGGGCGTTA---------------------------------------------------------------------GAGTGGCCGTGGCAAAATGGGTGAA-----------------------------------------CAAACTCTTAACCTTCTAACTTCTATAGTTAACTCAGGAACTCGACGTTTATAC----G--------------------GACAGACGGACACGTCCAGATTGGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGACGTTTATAC----G--------------------GACA.....................19170.0611000
dm3
AAATGTGGGCG--------TGGCAGTTTTTG-G--------CGGTTTTAGGGCGTTAGAGTGGGCGTTGAAATT-----------------------T-TTT--TTTTCAAATCAATAGAAATTTACAAGACTAAAA-------------------AAAATGTGAAAAA----------------------------ATATCA-------------ACACA--TT---------TTTTA-----------------TAAGTGTGGCCGTGACAGTTTTATGCGATTTGTGGGAGCTA---------------------------------------------------------------------GAGGGGTCGTGGCAACATGGGTCAGCAAACTT----------------------------------------------ACGCTGAATTTTATAGTT--CCTGAGATCTCGACTTTCATAC----G--------------------GACAGACGGAGAAGGCTAGATAGACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAGTT--CCTGAGATCTCGAC..........................................................242016.753350000000000000000000000010000000000000000002000002000000000000000000000000000000000000000000000000000000000000000000000000000000000100040000001300200501012000000000000000000000100000000000003000000200000000900000000000004500003016600000000000010000000000000000000000000000000000000000000000000000001404000000079000000000000000002000008
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAGTT--CCTGAGATCTCGACTT........................................................26510.80540000000000000000000000000000000000000000003000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000301020510101300000000000000000000000000000000001406000010000008000000000000210000230000000000001000000000000000000000000000000000000000000000000000001000000000100000000000000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAGTT--CCTGAGATCTCGACT.........................................................2567.83470000000000000000000000000000000000000010001000100000200000000000000000000000000000000000000000000000000000000010000000000000000000000000000000100000110040300000000000000000000000000000000010004001100000004000000000000050200140000000000000000000000000000000000000000000000000000000000000000002200000000201000000000000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATCTCGACTTTCATAC----G--------------------GACAGA...................2733.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000030004100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TTTAGGGCGTTAGAGTGGGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21202.705400000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000007000000200300000000000020011000000000020002003021200000000000000000000000000000000000110000000100000000000000000000000000000000000010000000200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAGTT--CCTGAGATCTCGACTTT.......................................................2752.40120000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100111000100000000000000000000000000000000000000101000000000003000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATCTCGACTTTCATAC----G--------------------GA.......................2342.2590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TTTTAGGGCGTTAGAGTGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21202.154300000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000020030100001000000000000000000000000000000000000101000000000010001000000000000000000212001000000100000000000010000000000000001000000000100000000000000000010000001000000000000000011020015000
...........................................................................................................................................................................................................................................................................GTGACAGTTTTATGCGATTTG........................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAGTT--CCTGAGATCTCGA...........................................................23201.65330000000000000000000000010000000000000000000000001000500000000000000000000000000000000000000000000000000000000000000000000000000000002020000000020000000003000000000000000000000000000000000000008000050000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001000000000
...TGTGGGCG--------TGGCAGTTTTTG-G--------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21181.56280000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100002000000000000000000000000000000010000000000000000001000000000500110000000000000000000000000000001000000000000000000000300110000000000000010112000000110000000010000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAGTT--CCTGAGATCTCG............................................................22201.503000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000300000000000000000000000000000000010000000000000000000000000000000000000000000000001000000000000000000005000000101105000000000000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACTTTCATAC----G--------------------GACAGACGG................2321.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TTTAGGGCGTTAGAGTGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20201.20240000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000200000002010200000001000000000000000000000000000000000000000000000000000000001000000019000000000000000000000000000002000
.........................................CGGTTTTAGGGCGTTAGAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21201.15230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010089000000000000100000000000010000000000000000000000000000000000000001000000010000000000000000000000000
................................................................................................................................................................................................................................................................................AGTTTTATGCGATTTGTGGGA...................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGACTTTCATAC----G--------------------GACAGA...................2231.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TGGCCGTGACAGTTTTATGCC.............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GATTTGTGGGAGCTA---------------------------------------------------------------------GAGGGG....................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGACTTTCATAC----G--------------------GACAGACGGA...............2621.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATCTCGACTTTCATAC----G--------------------GACAG....................2641.0040000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTATAGTT--CCTGAGATCTCGAC..........................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAC----G--------------------GACAGACGGAGAAGG..........2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................TTAGGGCGTTAGAGTGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19201.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110100000000000000000000000000000000000000000000000000000000000000100000000000010021000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCGACTTTCATAC----G--------------------GACAGACGGAGAAGGCT........3511.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAGTT--CCTGAGATCTC.............................................................21200.90180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000001000000400000000000000000000000000000000000000000000000000001000001002000030000000000000000000000000000000000000000000000000100000000000000000000000001000000000000000100000000
..............................................TTAGGGCGTTAGAGTGGGCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.85170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000000000000000000070000000000000000000000050000000000000000000000000000000000000000000000020000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATAGTT--CCTGAGATCTCG............................................................21200.85170000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000360000010010000001000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTT--CCTGAGATCTCGACTTT.......................................................2450.8040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000001000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TGTGGGCG--------TGGCAGTTTTTG-G--------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2280.7560000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATCTCGACTTTCATAC----G--------------------GACA.....................2540.7530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..............................................TTAGGGCGTTAGAGTGGGCGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22130.6990000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000030000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTCATAC----G--------------------GACAGACGG................2130.6720000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATCTCGACTTTCATAC----G--------------------GACAGAC..................2830.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCGACTTTCATAC----G--------------------GACAGACG.................2530.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTT--CCTGAGATCTCGACTTT.......................................................2160.6740000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000110000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGACTTTCATAC----G--------------------GACAGACG.................2330.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TGTGGGCG--------TGGCAGTTTTTG-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.65130000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000050000000000000000200000000210000000000000000000100000
.....TGGGCG--------TGGCAGTTTTTG-G--------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2080.6350000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAGTT--CCTGAGATCTCGA...........................................................21200.55110000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000001000000000000000000000000000000000000000000000000220000000000000000020000000000000000000000000000000000
......................CAGTTTTTG-G--------CGGTTTTAGGGCGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................TCGTGGCAACATGGGTCAGCAA..............................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................TTTG-G--------CGGTTTTAGGGCGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................CGTGGCAACATGGGTCAGCAA..............................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--CCTGAGATCTCGACTTTCATAC----G--------------------GA.......................2740.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATAC----G--------------------GACAGACGGA...............18200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--CCTGAGATCTCGACTTTCATAC----G--------------------GA.......................2640.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................CGTGGCAACATGGGTCAGCA...............................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
...............................................TAGGGCGTTAGAGTGGGCGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.4660000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000
...........................................GTTTTAGGGCGTTAGAGTGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.4590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000100000000000000000000000000000000000000000000000000002000010000000010000000000000110000
.............................................TTTAGGGCGTTAGAGTGGGCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.4590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000000000000000000000000000000000000000000000000000000000000000200200000000000000000000000000000000000000000000000000000000000002000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTT--CCTGAGATCTCGACT.........................................................2170.4330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
....GTGGGCG--------TGGCAGTTTTTG-G--------CGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2350.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAGTT--CCTGAGATCTCGACTTTC......................................................2850.4020000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTT--CCTGAGATCTCGACTTTCATA...................................................2750.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TTTTAGGGCGTTAGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.4080000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000010120000000000000000000000000
.............................TG-G--------CGGTTTTAGGGCGTTAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.4040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000100000000000000000000000000011000000000000000000000000
...........................................GTTTTAGGGCGTTAGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
AAATGTGGGCG--------TGGCAGTTTTTG-G--------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2450.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTT--CCTGAGATCTCGACTTT.......................................................2350.4020000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTT--CCTGAGATCTCGACTTTCA.....................................................2550.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.........................................CGGTTTTAGGGCGTTAGAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................TGGCAGTTTTTG-G--------CGGTTTTAGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGACTTTCATAC----G--------------------GACAGACG.................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCGACTTTCATAC----G--------------------GACAGACG.................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....TGGGCG--------TGGCAGTTTTTG-G--------CG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACTTTCATAC----G--------------------GACAGAC..................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTCATAC----G--------------------GACAGACGGA...............2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................TACAAGACTAAAA-------------------AAAATGTGAAAAA----------------------------...................................................................................................................................................................................................................................................................................................................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TTTTTG-G--------CGGTTTTAGGGCGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGGGCG--------TGGCAGTTTTTG-G--------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19190.3260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000010000000000000000000000000100000000000000000000000000000000000000010000000000000000100000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTT--CCTGAGATCTCGAC..........................................................21200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000020000000000000000010000000000000000000000000000000000000000000000000000000000000000000100010
..............................................TTAGGGCGTTAGAGTGGGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100010000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--CCTGAGATCTCGACTT........................................................1870.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
.AATGTGGGCG--------TGGCAGTTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTT--CCTGAGATCTCGACT.........................................................2270.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGAGATCTCGACTTTCATAC----G--------------------GA.......................2540.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATAC----G--------------------GACAGACGG................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CAGTTTTTG-G--------CGGTTTTAGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--CCTGAGATCTCGACTTTCATAC----G--------------------.........................2540.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................CGGTTTTAGGGCGTTAGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100300000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATAC----G--------------------GACAGACGGA...............1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CG--------TGGCAGTTTTTG-G--------CGGTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATATGTGAGCG--------TGACAGTTTTGG-G--------CGGTTTGTGGGCGGTAGAGTGGGCGTGGAAAAAAGA--------------------T-TTT--TTTACAAATCGATATATATTTACAAGACTTTTT-------------------T--------------------------------------------C-------------AA--CA--TT---------TTTCC-----------------AAAGTGAGGGCGTGACAGTTTTGCGCGGCTCGTGGGCGTTA---------------------------------------------------------------------GAGTGGGCGTGTCTC-----T------------------------------GAAAGCTGCA---TGCTTAATCTCATCATTCTAGTTTTTTTAGTT--CCTGAGATCGAGACGATCATAC----A--------------------GACAGACGAACAATGCCAGATCGACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................TTGG-G--------CGGTTTGTGGGCGGTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22140.1420010100
............................TGG-G--------CGGTTTGTGGGCGGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20170.0610000010
droYak3
AAGTGTGGGCG--------TGGCAGCTTTGG-G--------CGGTTTGAGGGCGTTAAAGTGGGCGTTTCAAAAAG---------------------T-TTT--TTTCCAAATCAATAGAAATTTACAAGACCAACA-------------------CAAAAATGAAC-A----------------------------AGATCA-------------AAACA--TT---------TTTCA-----------------AAAGTGTGGGCGTGGCAGTTTTGGGCGGTTTGTGGGCGTTA---------------------------------------------------------------------GAGTGGGCGTGGCAACAT--------------------------------------------------GAATCTCAACTTTCTACCTTTTGTAGTT--CCTGAGATCTCGACGTTCATAC----G----------------GACGGACAGAAATACATGGCCAGATCGACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................TTCA-----------------AAAGTGTGGGCGTGGCA.......................................................................................................................................................................................................................................................................21202.3547047000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--CCTGAGATCTCGACGTTCATAC----G----------------GA...........................26200.8016000000000016
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTACCTTTTGTAGTT--CCTGAGATC...............................................................2760.17100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTACCTTTTGTAGTT--CCTGAGATC...............................................................2670.14100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTCTACCTTTTGTAGTT--CCTGA...................................................................2690.11101000000000
......................................................................................................................................................................................................................................................................................................TTA---------------------------------------------------------------------GAGTGGGCGTGGCAACAT--------------------------------------------------GAATCT................................................................................................27140.07100100000000
................................................................................................................TCAATAGAAATTTACAAGACCAA.................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
droEug1
AAATTTCAGCGA-------TTTTAGTTTTCG-T--------CGACTATTCATTTTTAGATTTGAA------T-A-----------------------TATT---TAGGT--TACCAAAGACATTTACAGTC---------------------------------------------------TTTTCGACCAAAAG------------------------------------------------------------AAATTTCAGCAATTTTAGTTTTCCGTGATTTGTAGGCGTTA---------------------------------------------------------------------GAGTGGGCGTGGAAGTTTGCTTA----------------------------AGAATCTTAA---TGCTAAATCTCAACCCTCTATCTCTTATATTT--CATGAGATCTCAGCGTTCATAC----GGA------------CAGACGGGCGAACGGACATGGCTTAATCGACSizeHit CountTotal NormTotal
No Reads
droBia1
AACTGTGACCA--------CCACAGTTTTGG-G--------CGGCTGTTGGGCGTTAAAGAGAGTGCGGCACAT-----------------------T-TTT--TTGGTCATTCGATAGGTATTGATGATT---------------------------------------------------TTTTC-------------------------------------------------------------TATCATAAAAACTATAGGC--TACATATTTTCGCGTATTGTG-GCGGCA---------------------------------------------------------------------GAGTGGACGTGGCACCCCACTGAAACAAACTT---------------------------------GCGGTGTTTGACTGTTCTAGCTCTTATAGTT--TCCGAGATCTTAGCGTTCATAC----G--------------------GACGGACGGACATGGCTAGTTCGACSizeHit CountTotal NormTotal
No Reads
droTak1
AAATGTAGGCGC-T-----GGCCAGGTTTAA-GCGTTTATTGGGTTTGTGGGCGTTAGAGTGGGCGTGGCAATT-----------------------TTT-TACTTGGCCAATCGATAGGTATTGACGAAGCGAATA-------------------C----------------------------------------ATATCAGTTACTATTTTCATAA-----------------------------TAGCTTCAAAAC--------------------------TGTGGGCGTTA---------------------------------------------------------------------GAGGGGGCTC---------------------------------------CTAGAATCTGCA---TGCAAAATGCCAATCTTCTAGCTTTTATAGTT--TCCGAGATCTCAGCGTTCATAC----GGACAGACAGACAGACAGACGGACAGACGGACATGGCTAGATCGACSizeHit CountTotal NormTotal
No Reads
droEle1
AAATATTAGCT--------CGA---TTTTG-------------------------AAAATTGGGTGTACCGATA-----------------------GATAT--GACGATACGATATAGATATGAACACAAC-------------------------------------------------------------------AACA-------------ACCCAACCTTCTAACATGTTTCA-----------------GA-GC---GACAGTACATACATTCACGATTTGTGGGCGTTA---------------------------------------------------------------------GAGTGGACGTGGCTCCG--------CAAACTTGTGCTGCCTGGGAACTACCAGAGTCTGCA---TGCCAAGTCCCAAATCTCTAGCTCTTATAGTT--TCCGAGATCTCGACGTTCATAC----AGA------------CGCACGCACAGACGGACATGGCTAGATCGACSizeHit CountTotal NormTotal
No Reads
droRho1
AAATGTAGGCGC-T-----AGCCAGGCTTAA-GCGTTTAATGAGTTTTTGGGCGTTAGAGTGGGCGTGGCAATC-----------------------TTT-TATTAGGCCAATCGATAGGTATTGACGAAACAAATA-------------------C----------------------------------------ATATCAATTA------------CA--AT---------TTTCA---------TAGCATCAAAACTGTGGC---CACAGCT---TGTGGCTTGTGGGCGTCA---------------------------------------------------------------------GAGGGGGCGTGGCACCATTTTG----------------------------------------------AAATGCCAATCTTCTAGCTTTTATAGTT--TCCGAGATCTCAGCGTTTATAC----G--------------------GACAGACGGACATGGCTAGATCGACSizeHit CountTotal NormTotal
No Reads
droFic1
GAATCTCGACT--------GGAC---------------------------AATGTTAAAGTAGGCGTGTCACTTAGCTTGAAACTTCTGTCGCTGCGTATTC--A--------CTACAAGAATCTACATGATTTATT-------------------CTAATAT--TC-TAGCTCATAGAGTTTTTTTTATTAAAATGATTGTA-------------AGAC-----------------AA-----------------AGTATTTGGACGGCACC--ACTTCGCTGTTTGTGAGCATAA---------------------------------------------------------------------AAATGGGCGTGACACAA-------ATATTCTT-----GCTTACGAGTAATAA----------------GAAGTTACATTTTTAATCTTTTATAATT--TCCGAGAATTTGACGTTCATAC----G----------------GACGGACAGACAGACATACATAGATCGACSizeHit CountTotal NormTotal
No Reads
droKik1
TAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAGAGTA-----------------------------------------TTCAGAGTTTCAATCAGTTAACTTTTAAA------CTGAG---TTTGCGTAGA------------------------AACTGACAGACGGACATGGCTAGATCGACSizeHit CountTotal NormTotal
No Reads
droAna3
AACATTTTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATA--CC---------TTCCT-----------------GA---ACAGGCGCTACAGAATTGTGCCATTTGTAGTGGTGG---------------------------------------------------------------------TTGAGGGAGTGGCGATTTATA------------------------------TGAGTTTTCA---TACAAAATCTTTTAGCTTTATTTCATATAGCC--TGTAAGTTGCACGCGTTTATAC----C--------------------GACAGACGGACATGGCTATATTACCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AAAATTAACGAACTGGTGATAGCACCTGATT-T--------CTGTTTTGGGGCG--GGAGTGGGCGTAACAAAA-----------------------TTT-TG-----AAATTTGTT----------------------------------------------------------------------------------------------------------------------------TTTCAGATATAT--------------------------------------------ACTAACCATAGAAAT------AGTTTGGCATCAACACATTTTCACAAAACCTGGGCATTT---------GAGGAG-------------------------------------------------TCTTCA---TGCCAAATCCTATAGCTCTATGTCTTATAGTC--TCTGAGTCTCTGACAGACG------------------------AACGGACAAACGGATATGGCTTTATCGGCSizeHit CountTotal NormTotal
No Reads
dp5
GGTCC-------------------GATTT---------------------------AACAGGAGTGTGGATACCA----------------------AATTT--TTTTTCATTCTCTACGATTCTGCGTTTTTGATT---------------------------------------------------------------------------------------T------------------TCTCGTATCTTTAAAATTGTGGATGCCACAGATTTTCGTCCTTTGTGGGGGCGG---------------------------------------------------------------------AAGTGCGCGAGGCGATGTTTTGAAATATACTTGTAACAGTGACATATTACAGAAGTCTAGA---TACAAAATGTCGTTGTGCTAGCTCTTATAGGT--TTTGAGCACTAGGCGCTCATAG----G----------------GACGGACAAACAGATATGGCTCAATCGACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................TCTCGTATCTTTAAAATTGTGGATG............................................................................................................................................................................................................................................................................25206.05121012100000000
................................................................................................................................................................................................................................T------------------TCTCGTATCTTTAAAATTGTGGA..............................................................................................................................................................................................................................................................................24201.903800000000380
...............................................................................................................................................................................................................................................................................................GTGGGGGCGG---------------------------------------------------------------------AAGTGCGCG.................................................................................................................................................................1920.5010000010000
........................................................................................................................................T---------------------------------------------------------------------------------------T------------------TCTCGTATCTTTAAAATTGTGGA..............................................................................................................................................................................................................................................................................25200.4590000000090
...................................................................................................................................................................................................................................................TCTCGTATCTTTAAAATTGTGGATGCCA.........................................................................................................................................................................................................................................................................28200.2040400000000
..........................................................................................................................................................................................................................................................................................................................................................................................................ACTTGTAACAGTGACATATTACAGAAG...................................................................................................................2760.1710000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTGACATATTACAGAAGT..................................................................................................................21130.1520200000000
............................T---------------------------AACAGGAGTGTGGATACCA----------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1530300000000
............................T---------------------------AACAGGAGTGTGGATACCA----------------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530300000000
.............................................................................................................................................................................................................................................................TTAAAATTGTGGATGCCACA.......................................................................................................................................................................................................................................................................20200.1530300000000
....................................................................................................................................................................................................................................................................TGTGGATGCCACAGATTTTCGTCCT...........................................................................................................................................................................................................................................................25200.1020000000020
..............................................................................................................................................................................................................................................................................ACAGATTTTCGTCCTTTGTGG.....................................................................................................................................................................................................................................................21200.1020000000020
....................................................................................................................................................................................................................................................CTCGTATCTTTAAAATTGTGGATG............................................................................................................................................................................................................................................................................24200.1020000000200
...................................................................................................................................................................................................................................................TCTCGTATCTTTAAAATTGTGGATGC...........................................................................................................................................................................................................................................................................26200.1020020000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTAGGCGCTCATAG----G----------------GACG.........................21200.0510100000000
........................................................AACAGGAGTGTGGATACCA----------------------AA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000100
.........................................................................................................................................................................................................................................................ATCTTTAAAATTGTGGATGCCACAGATT...................................................................................................................................................................................................................................................................28200.0510000000100
................................................................................................................................................................................................................................................................................AGATTTTCGTCCTTTGTGGGGGCGG---------------------------------------------------------------------..........................................................................................................................................................................25200.0510100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTCATAG----G----------------GACGGACA.....................19200.0510100000000
.................................................................................................................................................................................................................................................................................GATTTTCGTCCTTTGTGGGG...................................................................................................................................................................................................................................................20200.0510010000000
............................................................................................................TCATTCTCTACGATTCTGCG........................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000010000
....................................................................................................................................................................................................................................................................................................................................................................................................AAATATACTTGTAACAGTGACA..............................................................................................................................22200.0510100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCACTAGGCGCTCATAG----G----------------GAC..........................23200.0510100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACTAGGCGCTCATAG----G----------------GA...........................21200.0510100000000
................................................................................................................................................................................................................................T------------------TCTCGTATCTTTAAAATTGTGGAT.............................................................................................................................................................................................................................................................................25200.0510000000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTAGGCGCTCATAG----G----------------GACGGACA.....................25200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGGCGCTCATAG----G----------------GAC..........................19200.0510100000000
droPer2
ACAGTT--------------------------------------------------------------------------------------------------TCTGCAGTTTGGTAGACGTGAACATTTCTTACGA-----------------------------------------------------------------------------------------------TTTTCGGACTTCGCATATCTTCAAAATCGTGGATGCCACAGTGCGTAACAGT---------------------------------------------------------------------------------------GCGTTATC----------------------------------ACAGGAGTCTGGA---AACAAATTTTGGCTTCTCTAGCTCTTATAGTA--TCTGAGATCTAGGCGCTTCTTGGGACGGA------------CAGACGGACAGACAGGCATGGCTCAATCGACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CAGTTT----------------------TAT-T--------AATTTTTCGGGAGCGAAAGTGGGCGTGGCAAAA-----------------------TTT-TA-----AAA-A--AGATAAATCTGCGCGTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAAGCCAGTACACATTTCAAATTTGGTGTCTATAGCCTTTGAGAAAATCGTTTAATTTGCGATGCGTAAGGGGGCGTGGCAAAAATTGAAAATAAACTT------------------------------------GAACACCGTGACTCTAGCTCCTTTAGTC--TCCGAGATGCGGACTGACG------------------------GACAGCCGGGCGGACATGGCTAGATCGACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
ATTATTTACT-------------------------------------------------------------------------------------------------------------------------------AATATTGCCCAAAAAAAAGG----------------------------------------ATATCG----------------------------------------------------------------ATATCGATTTTTATCGATTTATTGGAAACG---------------------------------------------------------------------GAGTAAGTT-ATCGAATTTCGGAAATAAACTC---------------------------------GCCACTAGGAGCACCTACATCTCTTTTAGGT--TCTGAAATCCTTGCGTTCATACATACGGACGGACGGACAGACAGACAGACGGACGGACATGCCTAGATCGACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................TGGAAACG---------------------------------------------------------------------GAGTAAGTT-ATCGAATT........................................................................................................................................................25131.77230000000019000000000000000001110000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................TGGAAACG---------------------------------------------------------------------GAGTAAGTT-ATCGAATTT.......................................................................................................................................................26131.1515000000002000000000000000330001000060000000000000000000000000000
.................................................................................................................................................................................................................................................................................................TGGAAACG---------------------------------------------------------------------GAGTAAGTT-ATCGAATTTC......................................................................................................................................................27130.699000000005000000000000000000000010030000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................AACG---------------------------------------------------------------------GAGTAAGTT-ATCGAATTTCG.....................................................................................................................................................24150.538000000000000000000000000010000000050002000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATACATACGGACGGACGGAC..................................23200.459000020000000000000000000070000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................TGGAAACG---------------------------------------------------------------------GAGTAAGTT-ATCGAAT.........................................................................................................................................................24200.357000000002000000000000000000000000050000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATACATACGGACGGACGGA...................................22200.255000000000000000000000000050000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TAAACTC---------------------------------GCCACTAGGAGCACCTACATC....................................................................................28160.193000000000000000000000000010000000020000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATACGGACGGACGGACAGACAGAC..........................27200.153201000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGACGGACGGACAGACAGA...........................22200.153000000000000000000000000000030000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................AACG---------------------------------------------------------------------GAGTAAGTT-ATCGAATTTC......................................................................................................................................................23150.132000000002000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................AACG---------------------------------------------------------------------GAGTAAGTT-ATCGAATTTCGGAA..................................................................................................................................................27150.132000000001000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TAAACTC---------------------------------GCCACTAGGAGCACCTACA......................................................................................26160.132000000000000000000000000000000000020000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TAAACTC---------------------------------GCCACTAGGAGCACCTAC.......................................................................................25160.132001000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................GAGTAAGTT-ATCGAATTTCGGAAA.................................................................................................................................................24170.122000000002000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCGTTCATACATACGGACGGACG.....................................25200.102000000000000000000000000000000200000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACATACGGACGGACGGACA.................................22200.102000000000000000000000000000000000000000200000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGACGGACGGACATG...........18200.102200000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATACATACGGACGGACGGACAGA...............................25200.102000000000000000000000000000000000200000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATACATACGGACGGACGGACA.................................24200.102000000000000000000000000020000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGACGGACGGACAGACA.............................20200.102000000000000000000000000000020000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGGT--TCTGAAATCCTTGC..........................................................21130.081000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGGT--TCTGAAATCCTTGCG.........................................................22130.081000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................TTGGAAACG---------------------------------------------------------------------GAGTAAGTT-ATCGAATT........................................................................................................................................................26130.081000000001000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................GAGTAAGTT-ATCGAATTTCGGAAATA...............................................................................................................................................26150.071000000001000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................ACG---------------------------------------------------------------------GAGTAAGTT-ATCGAATTTCGGAA..................................................................................................................................................26150.071000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................ATTTCGGAAATAAACTC---------------------------------GCCACTAGGAG..............................................................................................28150.071000000000000000000000000000000000000000000000010000000000000000
.....................................................................................................................................................................................................................................................................................................AACG---------------------------------------------------------------------GAGTAAGTT-ATCGAATTTCGGA...................................................................................................................................................26150.071000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCACCTACATCTCTTTTAGGT--TC......................................................................27150.071000000010000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................AACG---------------------------------------------------------------------GAGTAAGTT-ATCGAATTT.......................................................................................................................................................22150.071000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................TCGGAAATAAACTC---------------------------------GCCACTAGGAGC.............................................................................................26150.071000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................AACG---------------------------------------------------------------------GAGTAAGTT-ATCGAATTTCGG....................................................................................................................................................25150.071000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................GAATTTCGGAAATAAACTC---------------------------------GCCACT...................................................................................................25160.061000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................AACG---------------------------------------------------------------------GAGTAAGTT-ATCGAATTTCA.....................................................................................................................................................24160.061000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TAAACTC---------------------------------GCCACTAGGAGCACCTACATCT...................................................................................29160.061000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TC---------------------------------GCCACTAGGAGCACCTACATCTC..................................................................................25160.061000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACTAGGAGCACCTACATCTCTT................................................................................25160.061000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................G---------------------------------------------------------------------GAGTAAGTT-ATCGAATTTCGGAAA.................................................................................................................................................25160.061000000001000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................AAGTT-ATCGAATTTCGGAAATAAAC............................................................................................................................................25170.061000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................TAAGTT-ATCGAATTTCGGAAATAAACT...........................................................................................................................................27170.061000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................AAAGG----------------------------------------ATATCG----------------------------------------------------------------ATATCGATTT...................................................................................................................................................................................................................................................................21190.051000000000000000000000000000000000000001000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATACGGACGGACGGACAGACAG............................25200.051000000000000000000000000000000100000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATACATACGGACGGACGGACAG................................25200.051000000000000100000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGCGTTCATACATACGGACG.........................................24200.051000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATACGGACGGACGGAC..................................19200.051000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGACGGACGGACAGACAG............................21200.051000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGACAGACGGACGGAC..............19200.051100000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATACATACGGACGGACGGACAGACA.............................28200.051000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGT--TCTGAAATCCTTGCGTTCATAC..................................................27200.051000000000000000000000000100000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATACATACGGACGGACGGACAGAC..............................26200.051000000000000000000000000000000100000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATACATACGGACGGACG.....................................20200.051000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATCCTTGCGTTCATACATACGGAC..........................................28200.051000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATACGGACGGACGGACAGACAGA...........................27200.051000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTGCGTTCATACATACGGACGGA.......................................27200.051000000000000000000000000100000000000000000000000000000000000000
.......................................................................................................................................................AAAAGG----------------------------------------ATATCG----------------------------------------------------------------ATATCGATT....................................................................................................................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACATACGGACGGACGGACAGACAG............................27200.051000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGACGGACGGACAGAC..............................20200.051000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCGTTCATACATACGGACG.........................................21200.051000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTGCGTTCATACATACGG............................................22200.051000000000000000000001000000000000000000000000000000000000000000
droMoj3
GACTATCTTCA--------TGAAACTTTTAGAA--------CGGTATCATAAGGTTGAAATGTGTGTA----------------------------------------------------------CAAGTCTCTAG-------------------T---------------ACTT-------------------------AAGA----------TA--CG--TT---------TTTAC-----------------AAA--------------------------TTGGGGTCG--A----------------------------------AAA------------TTTACAAATTG---------GCGTGGTTATCGTA---------------------------------------AATCTGTAGATTACAAAATTTAAAGTCTCTAGCTTTTATATTT--TCTGAGATCTCGGCGTTTATAC----G--------------------GACAGACGGACAGGGCTATATCGACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGCGTTTATAC----G--------------------GACAG....................2020.501100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAC----G--------------------GACAGACGGACAGGGC.........21200.051010000
droGri2
GGCA----------------------------------------------------------------------------------------------------------AACTGGTATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAA-----------------------------------------CCAACTTGGAAGTCTCTAGCTTTTACAGTC--TCTGAGATATGCGTCTTCATAC----A----------------GACGGACAGACGGGCATGGCTATATCGACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:04 PM