ID:

dsi_5779

 Coordinate:

2r:20312574-20312723 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [2r_20312724_20312857_+]; exon [2r_20312724_20312857_+]; intron [2r_20312404_20312723_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTTGAAGCATAATCAGCAGTAGCAATCGAAATCCATTCCCGAGTTAACTTGAGTTATGTTCTAACTGATATTTTGGCTTCTTAACATGGTTGATTTGAAGTGAACTTTTGAGTTTTTAATGTCGACGGCACTTGTCATCCAAACTGAAGGCTCATGCCACTCAAGAGATCTGATAATGTGACTGATTGTAACTCTGCAGGATTCTCAAAACGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGA
**************************************************...............(((........((.((...((((((((..((((.((((......((((((((((.....((.(((....))).)).....))))))))))...)))))))).)))).....))))....))..)).......)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 GSM343915
embryo
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
..........................................................................................................................................................................................................................AAACGTAACTCAATTGATTTGGAT........ 24 0 1 5.00 5 5 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AACTCAATTGATTTGGAT........ 18 0 1 5.00 5 5 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AACTCAATTGATTTGGATGGT..... 21 0 1 5.00 5 3 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................AAACGTAACTCAATTGATTTGGATG....... 25 0 1 5.00 5 4 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CTCAATTGATTTGGATGGTCCC.. 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CTCAAAACGACGAGAAACGTAACTC..................... 25 0 1 3.00 3 2 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GAAACGTAACTCAATTGATTTGGAT........ 25 0 1 3.00 3 2 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CGTAACTCAATTGATTTGGAT........ 21 0 1 2.00 2 0 1 0 0 0 0 1 0 0
.....................................................................................................................................................................................................CACGATTCTCAAAACGACG.................................. 19 1 1 2.00 2 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AACTCAATTGATTTGGATGGG..... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AAACGTAACTCAATTGATTTGGATGGT..... 27 0 1 2.00 2 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................ATGTGAATGATTGTCAGTCTGC.................................................... 22 3 1 2.00 2 0 0 0 0 2 0 0 0 0
.......................................................................................................................................................................................................................GAGAAACGTAACTCAATTGATTTGGAT........ 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AAACGTAACTCAATTGATTTGGATGGTC.... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACGTAACTCAATTGATTTGGATGGT..... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CTCAATTGATTTGGATGGT..... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TAACTCAATTGATTTGGATGGT..... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................GAAACGTAACTCAATTGATTTGGATG....... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACGTAACTCAATTGATTTTGATGGTCCC.. 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AATTGATTTGGATGGTCCC.. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................AACGTAACTCAATTGATTTGGAT........ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AACGTAACTCAATTGATTTG........... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................AACGTAACTCAATTGATTTGGATGGT..... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TGGGACTGATTGTAACT........................................................ 17 1 1 1.00 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................CACGATTCTCAAAACGACGAGAA.............................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................TAATGTCGACGGTACTTATTAT............................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................GTAACTCAATTGATTTGGATGGT..... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................GTAACTCAATTGATTTGGAT........ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................ACCACGATTCTCAAAACGACGAG................................ 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GAGAAACGTAACTCAATTGATT............. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AACTCAATTGATTTGGATGGTC.... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GTAACTCAATTGATTTGGATGGG..... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................ACTCAATTGATTTGGATGGTC.... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................................................TGACATGATTGATTTGACGTG................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0
..................................................TCGGTTATGTTCTAACTG...................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 1 0 0 0 0
..........................................................................................TGGATTTGAAGTGAAGTTTTGC.......................................................................................................................................... 22 3 5 0.20 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................AGAGATCTGATAATT....................................................................... 15 1 12 0.17 2 0 0 0 0 2 0 0 0 0
....................................................................................................................................................................................GACTGACTGTAACTC....................................................... 15 1 7 0.14 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................AAATTGATTTGGATCGTC.... 18 2 16 0.13 2 0 2 0 0 0 0 0 0 0
...............AGCAGTAGCAGTCGA............................................................................................................................................................................................................................ 15 1 20 0.10 2 0 0 0 0 0 0 0 0 2
............................................................................................................TTGAGTTTCTAACGTCG............................................................................................................................. 17 2 11 0.09 1 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................ACGTAGCTCAATTGGTTTGA.......... 20 3 11 0.09 1 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................ATGCCCCTCAAGAGGT................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AAAACTTCGTATTAGTCGTCATCGTTAGCTTTAGGTAAGGGCTCAATTGAACTCAATACAAGATTGACTATAAAACCGAAGAATTGTACCAACTAAACTTCACTTGAAAACTCAAAAATTACAGCTGCCGTGAACAGTAGGTTTGACTTCCGAGTACGGTGAGTTCTCTAGACTATTACACTGACTAACATTGAGACGTCCTAAGAGTTTTGCTGCTCTTTGCATTGAGTTAACTAAACCTACCAGGGCT
**************************************************...............(((........((.((...((((((((..((((.((((......((((((((((.....((.(((....))).)).....))))))))))...)))))))).)))).....))))....))..)).......)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
............................................................................................................................................................................................CGTAGAGACGTCCTAAGAGT.......................................... 20 2 1 5.00 5 3 2 0 0 0
............................................................................................................................................................................................CGTAGAGACGTCCTAAGAG........................................... 19 2 3 0.67 2 1 1 0 0 0
............................................................................................................................................................................................CGTAGAGACGTCCTAAGAGTG......................................... 21 3 4 0.50 2 1 1 0 0 0
................................................................................................................................................................................................GAGTCGTCATAAGAGTGTTG...................................... 20 3 6 0.17 1 0 0 1 0 0
.................................................................................................................AAAAATTACAGCTGTC......................................................................................................................... 16 1 6 0.17 1 0 0 0 1 0
..............................TTAGGTAAGGGCTTCAATG......................................................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 1
............................................................................................................................................................................................................AAGTTTTGGTGCTCTTTGCT.......................... 20 3 18 0.06 1 1 0 0 0 0
.....................TCGGTAGCTGTAGGTAA.................................................................................................................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:20312524-20312773 + dsi_5779 TTTTG-AA--GC-----AT--------AA-TCAGCAGTAGCAATCGA---------------------------AAT--------------------------------------------CC----ATT-----------CCCGA----GTTAACTTGA--GTTAT---GTTCTAACTG--------------ATA-TTTTGGCTTCTTAACATGGTTGAT-TTGAAGTGAAC------TTTTGAGTTTT------T-AATGTCG--------------------------ACGGCACT-TGTCATCCAA-ACTG---------------------------------AAGGCTCA-TGCCACTCAAGAG---------ATCTGAT--------AATGTGAC-----TGA---TTGTAAC---TCTGCAGGATTCTCAAAACGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGA
droSec2 scaffold_9:3095736-3095985 + TTTTG-AA--GC-----AT--------AA-TCAACAGTAGCAATCGA---------------------------AAT--------------------------------------------CC----ATT-----------CCCGA----GTTAACTTGA--GTTAT---GTTCTAACTG--------------ATA-TTTTGGCTTCTTAACATGGTTGAT-TTGAAGTGAAC------TTTTGAGTTTT------T-AATGTCG--------------------------ACGGCACT-TGTCATCCAA-ACTC---------------------------------AACGCTCA-TGCCACTCAAGAG---------ATCTGAT--------AATGTGAC-----TGA---TTGTAAC---TCTGCAGGATTCTCAGAACGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGA
dm3 chr2R:19811738-19811988 + TTTTG-AA--GC-----AT--------AA-TCAACAGTAGCAATCGA---------------------------AAT--------------------------------------------CC----ATT-----------CCCGA----GTTATCTTGA--GTTTT---GTTCTAACTG--------------ATA-TTTTGGCTTCTTAACATGGTTGAT-TTGAAATGAAC------TTTTGAGTTTT------T-AATGTCG--------------------------ACGGCACT-TGTCATCCAAAACTC---------------------------------AAGGCTAA-TGCCACGCTAAAG---------ATCTGAT--------AATGTGAC-----TAA---TTGTAAT---TCTGCAGGATTCTCAAAACGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGA
droEre2 scaffold_4845:21184575-21184820 + TTTTG-AA--GC-----AT--------AC-TCCACAGTAGAACGCAA---------------------------AAT--------------------------------------------CC----ATT-----------TCTGA----GTTAACTTGA--GTTAT---GTTCTAACTG--------------ATA-TTTTGGCTTTTTA-CATTGCTGAT-TTTACGTGAAC------TTTTGAGTTTT------T-AACGTCG--------------------------ACGGCACT--GTCATTCGA-AC-C---------------------------------AAGGCTCA-AACTACTTTGGA----------ATCTGAT--------AATGTGAC-----TGA---TTGTAAC---TCTGCAGGATTCTCAAAACGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGA
droYak3 2R:19789348-19789596 + TTTTG-AA--GC-----AT--------AA-TCCACAGTAGAACGCGA---------------------------AAT--------------------------------------------CC----ATT-----------CCTGA----GTTAACTTGC--GTTAT---GTTCTAACTG--------------ATA-TTTTCGCTTTTTA-CATGGTTGAT-TTTACGTGAAT------TTTTGAGTTTT------T-TACTTCG--------------------------ACGGCACT-TGTCATTCGA-ACTC---------------------------------AAGGCTCA-TACTAATTTAGAG---------ATCTGAT--------AATGTGAC-----TGC---TTGTAAC---TCTGCAGGATTCTCAAAACGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGA
droEug1 scf7180000409464:184788-185038 + ATCTA-AA--TC-----AT--------AAATCCATAGTTGAACACGT---------------------------AAA--------------------------------------------CC----ACT-----------TATGA----ATAAACTTGA--GTTAC---AGTTTTAGTG--------------ATA-TTTTGGCTTTTTACCATTGTTGAT-TTTACATGA-T------TTTTAAGTTTT------T-AAAATCG--------------------------ACGGCACT-TGTCATTCGA-AATC---------------------------------AAGAATGTGAACTATTTTAGAC---------ATCTAAA--------AACATTTT-----CGA---TCGCTAC---TCTACAGGATTCTCAGAACGATGAGAAACGTAACTCAATTGATTTGGATGGTCCCGA
droBia1 scf7180000302143:337095-337345 + TTTTA-AA--CC-----AT--------AATTCCATAGTAGTACATCA---------------------------AAT--------------------------------------------CA----ATT-----------TTTGA----GTTGACCTGA--GCTAT---ATATTTATTG--------------ATA-TTTTTGCTTCTTACCAGTGTTGGT-TTTACATGA-C------TTTTGAGTTTT------T-GAAATCA--------------------------ACGGCACT-TGTCATTCCA-ACTA---------------------------------AAGGATCTCAGTAGTATTTTCC---------ACATGAT--------AACCCTTT-----CGA---TTGCAAT---TACGCAGGATTCTCAGAACGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGA
droTak1 scf7180000415878:931652-931900 + TTTTA-AA--CC-----AT--------AACTCCATAGTAGAACATGA---------------------------AAC--------------------------------------------CC----ATT-----------TTTGA----GTTGACTTGA--GTTATG--AAATTTATTG--------------ATA-TTTTGGCTTTTTACCATTGTTGAT-TTTACATGA-C------TTTTAAGTTTT------T-AAAATCA--------------------------ACGGCACT-TGTCATTCAA-ACTC---------------------------------AAGGATATGAA---TATAAGAC---------ATCTGAT--------TATTTTTA-----TGA---TTGCAAT---TATGCAGGATTCTCAGAACGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGA
droEle1 scf7180000491214:5273763-5274032 - TTCCA-AC--CC-----ATACAAACAAAA-TCCATAGTAGACCATGA---------------------------AAT--------------------------------------------TC----GTT-----------TTTAA----GTTAACTTCA--GTTCT---TATTTTAGTG--------------ATA-TTTTGGCTTTTTACCATTGTTGAT-TTGACATAAAC------TTTTAAGTTTTGG---TT-TCAATCG--------------------------ACGGCACT-TGTCATTCGG-AGTC---------------------------------AATAATAA-TAATTGTCTAGAATAACATAACATAACAT--------AACATTTT-----TTA---ACGAAAT---TCTGTAGGATTCTCAGAACGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGA
droRho1 scf7180000777217:19071-19336 - TTTTAAGA--AC-----ATATAAAAGAAA-TCCATGGTAGAACATGA---------------------------AAT--------------------------------------------CC----ATT-----------TATGA----GTTGACTTGA--GATCT---AATTTTAATG--------------ATA-TTTTGGCTTTTTAACATTGTTGAT-TTTACATAAAC------TTTTAAGTTAT------TCAAAATCG--------------------------ACGGCACT-TGTCATTCGG-AATC---------------------------------AAGGATATGAATAATTGTAGAT---------ATGTGAT--------AATATTTTAAACGTGA---TTGAAAC---TCTGCAGGATTCTCAGAACGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGA
droFic1 scf7180000453858:1548786-1549026 + TATAG-A---CC-----AT--------ACCTCCATAGTAA----------------------------------CAT--------------------------------------------CC----CTT-----------TCTGA----GTTGACATAA--GTTTA---AGTTTAAGTG--------------ATA-TTTTGGCTTCTTACCAT---TGAT-TTTACATGATG------TTTTGAGTTTC------C-AAAATCG--------------------------ACGGCACT-TGTCATTTCA-ACTC---------------------------------GAGGACGTGAACAGTTTTAGAT---------TTCTGAT--------TTAATTTT-----TAA---TCATAAC---TCTGCAGGATTCTCAGAACGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGA
droKik1 scf7180000302355:393762-394000 + CATAA-GAAGCC-----ATGT--------------AGATGAAAATTG---------------------------AGAATATTCC-----------------------------------------TTGGTTGATATTCGTTTTTGG------------------------------------------------------TTGGCTTTTTACCACTTTTGATTTTTACATAAAG------TGTTTAGTTTT------T-TAAATCA--------------------------ACGGCACTTTGTCATTTCTAATTT------------------------G--------GGAACTCT-TT-CAT--CCGGG---------ATGTAAT--------GGTGTTTT-----TGA---CTTTAACTCCTCTGCAGGATTCTCAGAACGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGA
droAna3 scaffold_13266:5675932-5676160 + TATTT-AA--ACG----A---------AA-------------CTGGA---------------------------AAC---------------------------------------------G----AGT-----------TAAG--------AACTTGA--TTTAT---TCTTTAAATG--------------ATAATTTATGCTTATTATCATTCTTGAT-TTTACATGATG------TTTTATATTTTTA---TTTTAATGCG--------------------------ACGGCACT-TGTCATTCCA-CTTGG--------------A---ATTT---------------GCA-TG--AATT---TG---------ATCTAAT--------A-TCTTAC-----TGA---T-CTGAA---TCCACAGGATTCTCA---CGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGA
droBip1 scf7180000396372:290543-290781 + TATTT-AA--ACGAAACAT--------AA-----AACTAGAAGA-------------------------------------------------------------------------------------T-----------AGTCA-----AAGACTTGA--TTTAT---AATTTAAATG--------------ATAATTTATGCTTATTATCATTCTTGAT-TTTACATGAAA------TTATGAATTTTTA---TTTTAATGCG--------------------------ACGGCACT-TGTCATTCCA-ATTAA--------------A---ATTT---------------GCA-TG--AATT---TG---------ATCTAAT--------ACTG-GAC-----TGA---T-CTAAA---TCCCTAGGATTCTCAAAACGATGAGAAACGTAACTCAATTGATTTGGATGGTCCCGA
dp5 3:1752854-1753096 + TTTTG-GA--TCC----A------------TCCAT--TCGTACATCA---------------------------AAT--------------------------------------------T-----AGT-----------TGTGA-----TTGATTTGATGGTTATT--GCTTTTATAA--------------ATA-TTTTCGCTTTTTGACAA---TGAG-TTTACATGAAC------TTTTCTGTTTT------TTAAAATCA--------------------------ACGGCACT-TGTCATTCGT-AGAT-----------------------AGGTC--------------TACATTTCTATTG---------TTCTGAT--------AATATTTA-----TGT---TCGTTAC--TTCTGCAGGAGTCTCATAACGATGAGAAACGTAACTCAATTGATTCGGACGGTCCCGA
droPer2 scaffold_2:1940426-1940668 + TTTTG-GA--TCC----A------------TCCAT--TCGTACATCA---------------------------AAT--------------------------------------------T-----AGT-----------TGTGA-----TTGATTTGATGGTTATT--GGTTTTATAA--------------ATA-TTTTCGCTTTTTGACAA---TGAG-TTTACATGAAC------TTTTCTGTTTT------TTAAAATCA--------------------------ACGGCACT-TGTCATTCGT-AGAT-----------------------AGGTC--------------TACATTTCTATTG---------TTCTGAT--------AATATTTA-----TGT---TCGTTAC--TTCTGCAGGAGTCTCATAACGATGAGAAACGTAACTCAATTGATTCGGACGGTCCCGA
droWil2 scf2_1100000004514:1176066-1176363 - TTTTA-AT--ATT----AT------------TAAAATAAGT------ATTGAAA-----------------------ATATTTCAGGAAAAGATCATAAAAGAAAAAGAATTCATCGAATTTT--------AATAATTAATTTTGA----TTT-TATTATTATTTCTC--AATGTTGAAACTTGTGTT---------------GAATGTTTATAA------TTTTTACACATAA------TTTATAGTTTT------A-ACCATCA------------------------AAAAGGCACA-GTACATTATT-TAAT-----------------------AAGTC----------TT---AAGTATTTATTA---------ATCACAT---ATTATAACC--AA-----TGAA--TTCTATA---TTGACAGGATTCTCAAAATGATGAGAAACGTAATTCAATTGACTCAGATGGTCCAGA
droVir3 scaffold_12875:11955561-11955824 + dvi_6286 TTTTT-TT--CTC----AT--------AAATTTACAG--GT------ATTGTCATCTCAAATCTA------AAA---GCAAC----------------------------------------C----G--------TT---CAT-GTTGGTTTTATATTA--TTTTTAAAATTTCTTAAGATTTTGTT---------------------------TGTCGTT-TTTAA----AC------T-----------------TTAGTTCGTCTATAAAATTCCAATT-----------TTCATC-AAACATACAA-ATTT----A----------A---AAA--A-AC-----AAATCTAT-TTTCGCTGATGAA---------AAATTTC--------ATTCCGAC-----T--------CTTT---AATACAGGATACTCAAAATGAAGAAAAACGTAATTCTATCCAATCAGATGGTGCAGA
droMoj3 scaffold_6496:14949836-14950112 + TATAT-AA--AAAAAATAT-----AT-AAATATATACTTAAATATTT---------------------------AAAACATTTT-------------------------------------------TATATATATTTTT-TTTTA----ATTTTCTTTA--ATTAT---GTATACCCTA---TTATTGAATTTTTA-TTTTAATTTTT----------------TACATATACATATATT-TTGTA---------------TTTT--------------------------CTTTTAAT-TGTTATTCAA-ATCGATTTATCGAATTTTGAGCT----AATTC----------AC---A--------ATA---------ATTTAATATT-----TATA-TTT-----TAC---ATACTCC---TCTATAGGATACTTTAAGCGAAGAGAAACGCAATTCTATAGACTCAGATGGTCCAGG
droGri2 scaffold_15245:11760422-11760705 - CTGCC-AT--T----------------A------AGCAGGT------GTCGTAAGCTAAACTAAAGCTTCCAAA---TCAA------------------------AGCTTACCATCGTATACTCTTTATT-----------TATT----------CTTAA--TTTTT---TTTT-------------------------------------------TTTGT-TTTACTTAA-T------TTTCATTCCTTTAAATTTTCAGTGCGATTACAAAATTCTGTTTTTGTTAAAAATGGCACG-GTTGTAAATG-AGAA-----------------------AAGTTTATTATGGATATTGAACAATTCC-------------------T--------TTCT--TA-----TGTATACTCAAAT---CAAACAGGATACTCATAACGAAGAGAAACGTAATTCAATTGATTCAGATGGTCCTGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTTTG-AA--GC-----AT--------AA-TCAGCAGTAGCAATCGA---------------------------AAT--------------------------------------------CC----ATT-----------CCCGA----GTTAACTTGA--GTTAT---GTTCTAACTG--------------ATA-TTTTGGCTTCTTAACATGGTTGAT-TTGAAGTGAAC------TTTTGAGTTTT------T-AATGTCG--------------------------ACGGCACT-TGTCATCCAA-ACTG---------------------------------AAGGCTCA-TGCCACTCAAGAG---------ATCTGAT--------AATGTGAC-----TGA---TTGTAAC---TCTGCAGGATTCTCAAAACGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTAACTCAATTGATTTGGAT........2415.00500500000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATTGATTTGGAT........1815.00500500000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATTGATTTGGATGGT.....2115.00501300000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTAACTCAATTGATTTGGATG.......2515.00501400000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAATTGATTTGGATGGTCCC..2213.00300300000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAAACGACGAGAAACGTAACTC.....................2513.00301200000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGTAACTCAATTGATTTGGAT........2513.00301200000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAACTCAATTGATTTGGAT........2112.00211000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATTGATTTGGATGGG.....2112.00200200000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTAACTCAATTGATTTGGATGGT.....2712.00200100000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAACGTAACTCAATTGATTTGGAT........2712.00201100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTAACTCAATTGATTTGGATGGTC....2811.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTAACTCAATTGATTTGGATGGT.....2511.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAATTGATTTGGATGGT.....1911.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTCAATTGATTTGGATGGT.....2211.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGTAACTCAATTGATTTGGATG.......2611.00101000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGATTTGGATGGTCCC..1911.00100000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTAACTCAATTGATTTGGAT........2311.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTAACTCAATTGATTTG...........2011.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTAACTCAATTGATTTGGATGGT.....2611.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTCAATTGATTTGGATGGT.....2311.00100000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTCAATTGATTTGGAT........2011.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAACGTAACTCAATTGATT.............2211.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATTGATTTGGATGGTC....2211.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTCAATTGATTTGGATGGG.....2311.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAATTGATTTGGATGGTC....2111.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................AGAG---------ATCTGAT--------AATT..................................................................................15120.17200000002000000000
droSec2
TTTTG-AA--GC-----AT--------AA-TCAACAGTAGCAATCGA---------------------------AAT--------------------------------------------CC----ATT-----------CCCGA----GTTAACTTGA--GTTAT---GTTCTAACTG--------------ATA-TTTTGGCTTCTTAACATGGTTGAT-TTGAAGTGAAC------TTTTGAGTTTT------T-AATGTCG--------------------------ACGGCACT-TGTCATCCAA-ACTC---------------------------------AACGCTCA-TGCCACTCAAGAG---------ATCTGAT--------AATGTGAC-----TGA---TTGTAAC---TCTGCAGGATTCTCAGAACGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATTGATTTGGATGGT.....2118.0080080
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGAACGACGAGAAACGT..........................2013.0030030
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACGACGAGAAACGT..........................1813.0030030
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTAACTCAATTGATTTGGATGGT.....2713.0030120
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTGATTTGGATGGTC....1812.0020020
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTCAATTGATTTGGATGGT.....2312.0020020
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGAACGACGAGAAACGTAACTC.....................2511.0010010
....................................................................................................................................................................TAT---GTTCTAACTG--------------ATA-TTTTGGCTT..................................................................................................................................................................................................................................................................................2511.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAATTGATTTGGATGGT.....1911.0010010
.......A--GC-----AT--------AA-TCAACAGTAGCAATCGA---------------------------A......................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTGATTTGGATGGTCCC..2011.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATTGATTTGGATGGTCCCGA2611.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGAACGACGAGAAACGTA.........................2111.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATTTGGATGGTCCC..1811.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCAGAACGACGAG................................1811.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACGACGAGAAACGTAACT......................2211.0010010
dm3
TTTTG-AA--GC-----AT--------AA-TCAACAGTAGCAATCGA---------------------------AAT--------------------------------------------CC----ATT-----------CCCGA----GTTATCTTGA--GTTTT---GTTCTAACTG--------------ATA-TTTTGGCTTCTTAACATGGTTGAT-TTGAAATGAAC------TTTTGAGTTTT------T-AATGTCG--------------------------ACGGCACT-TGTCATCCAAAACTC---------------------------------AAGGCTAA-TGCCACGCTAAAG---------ATCTGAT--------AATGTGAC-----TAA---TTGTAAT---TCTGCAGGATTCTCAAAACGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATTGATTTGGATGGT.....2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000200000000000000000000201000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTCAATTGATTTGGATGGT.....2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATTGATTTGGATG.......1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................TTT------T-AATGTCG--------------------------ACGGCACT-TG..................................................................................................................................................................................2112.0020000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATTGATTTGGATGGG.....2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTAACTCAATTGATTTGGATGGT.....2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAACTCAATTGATTTGGATGGT.....2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAACGACGAGAAACGTAACTCAAT..................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCAAAACGACGAGAAACGTAACTCAAT..................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCAAAACGACGAGAAACGTAACTC.....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTAACTCAATTGATTTG...........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACGACGAGAAACGT..........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAAACGTAACTCAATTGA...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCAAAACGACGAGAAACGTAACTCAA...................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAC-----TAA---TTGTAAT---TCTG.....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGACGAGAAACGTAACTCAATTG................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACGAGAAACGTAACTCAATTGA...............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................T-TGTCATCCAAAACTC---------------------------------AAGGC...............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........GC-----AT--------AA-TCAACAGTAGCAATCGA---------------------------A......................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......A--GC-----AT--------AA-TCAACAGTAGCAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TTTTGAGTTTT------T-AATGTCG--------------------------AC...........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAACGACGAGAAACGT..........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGATTTGGATGGTCCC..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTCAATTGATTTGGA.........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTCAAAACGACGAGA...............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACGAGAAACGTAACT......................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AT---TCTGCAGGATTCTCAAAACGACGA.................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................AT--------------------------------------------CC----ATT-----------CCCGA----GTTATCTTGA--GT.............................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTGATTTGGATGGTCC...1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................GTTGAT-TTGAAATGAAC------TTTT.............................................................................................................................................................................................................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACGAGAAACGTAACTCAAT..................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTGATTTGGATGGTCCCG.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAACTCAATTGATTTGGATGGTCCC..2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGATTTGGATGGTCCCGA2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTAACTCAATTGATTTGGATGGTC....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCAAAACGACGAGAAACGTAACTCAA...................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TTAACATGGTTGAT-TTGAAAT...........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAATTGATTTGGATGGTC....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAACTCAATTGATTTGGATGGTC....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGTAACTCAATTGATTTGGATGG......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAGAAACGTAACTCAATTGATT.............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAACTCAATTGATTTGGATG.......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTTTG-AA--GC-----AT--------AC-TCCACAGTAGAACGCAA---------------------------AAT--------------------------------------------CC----ATT-----------TCTGA----GTTAACTTGA--GTTAT---GTTCTAACTG--------------ATA-TTTTGGCTTTTTA-CATTGCTGAT-TTTACGTGAAC------TTTTGAGTTTT------T-AACGTCG--------------------------ACGGCACT--GTCATTCGA-AC-C---------------------------------AAGGCTCA-AACTACTTTGGA----------ATCTGAT--------AATGTGAC-----TGA---TTGTAAC---TCTGCAGGATTCTCAAAACGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTAACTCAATTGATTTGGATGGT.....2713.0030000210
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATTGATTTGGATGGT.....2113.0030002010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTAACTCAATTGATTTGGAT........2412.0021100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAACTCAATTGATTTGGATGGT.....2411.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTCAATTGATTTGGATGGT.....2311.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................CTTTGGA----------ATCTGAT--------AATGTGAC-----TG.......................................................................2411.0010000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGTAACTCAATTGATT.............2011.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGTAACTCAATTGATTTGGATG.......2611.0010100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTAACTCAATTGATTTGGATGGT.....2611.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTGATTTGGATGGTCCC..2011.0010100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCAAAACGACGAGA...............................1911.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTAACTCAATTGATTTGGATG.......2511.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATTGATTTGGAT........1811.0010001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATTGATTTGGATGGC.....2111.0010100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTAACTCAATTGATTTGGATGG......2611.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATTGATTTGGATGGTC....2211.0010100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCAAAACGACGAGAAACGTAACTC.....................2611.0010100000
droYak3
TTTTG-AA--GC-----AT--------AA-TCCACAGTAGAACGCGA---------------------------AAT--------------------------------------------CC----ATT-----------CCTGA----GTTAACTTGC--GTTAT---GTTCTAACTG--------------ATA-TTTTCGCTTTTTA-CATGGTTGAT-TTTACGTGAAT------TTTTGAGTTTT------T-TACTTCG--------------------------ACGGCACT-TGTCATTCGA-ACTC---------------------------------AAGGCTCA-TACTAATTTAGAG---------ATCTGAT--------AATGTGAC-----TGC---TTGTAAC---TCTGCAGGATTCTCAAAACGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATTGATTTGGATGGT.....2114.00402000020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTGATTTGGATGGTCCC..2012.00200200000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTAACTCAATTGATTTGGATG.......2511.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAATTGATTTGGATGGT.....2011.00101000000000
...............................................................................................................................ATT-----------CCTGA----GTTAACTTGC--GTT............................................................................................................................................................................................................................................................................................................................2111.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGTAACTCAATTGATTTGGATGGT.....2811.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTGATTTGGATGGTCC...1911.00110000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTAACTCAATTGATTTGGATG.......2311.00110000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTAACTCAATTGATTTGGATGGC.....2611.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTAACTCAATTGATTTGGATGGT.....2711.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTAACTCAATTGATTTGGATGGTCC...2811.00100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTCAATTGATTTGGAT........2011.00100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAAACGACGAGAAACGTAACTCA....................2611.00100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTCAATTGATTTGGATGGC.....2311.00100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAAACGACGAGAAACGT..........................2011.00100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTAACTCAATTGATTTGGATGGTC....2711.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGACGAGAAACGTAACTCA....................2211.00100000010000
droEug1
ATCTA-AA--TC-----AT--------AAATCCATAGTTGAACACGT---------------------------AAA--------------------------------------------CC----ACT-----------TATGA----ATAAACTTGA--GTTAC---AGTTTTAGTG--------------ATA-TTTTGGCTTTTTACCATTGTTGAT-TTTACATGA-T------TTTTAAGTTTT------T-AAAATCG--------------------------ACGGCACT-TGTCATTCGA-AATC---------------------------------AAGAATGTGAACTATTTTAGAC---------ATCTAAA--------AACATTTT-----CGA---TCGCTAC---TCTACAGGATTCTCAGAACGATGAGAAACGTAACTCAATTGATTTGGATGGTCCCGASizeHit CountTotal NormTotal
No Reads
droBia1
TTTTA-AA--CC-----AT--------AATTCCATAGTAGTACATCA---------------------------AAT--------------------------------------------CA----ATT-----------TTTGA----GTTGACCTGA--GCTAT---ATATTTATTG--------------ATA-TTTTTGCTTCTTACCAGTGTTGGT-TTTACATGA-C------TTTTGAGTTTT------T-GAAATCA--------------------------ACGGCACT-TGTCATTCCA-ACTA---------------------------------AAGGATCTCAGTAGTATTTTCC---------ACATGAT--------AACCCTTT-----CGA---TTGCAAT---TACGCAGGATTCTCAGAACGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGASizeHit CountTotal NormTotal
No Reads
droTak1
TTTTA-AA--CC-----AT--------AACTCCATAGTAGAACATGA---------------------------AAC--------------------------------------------CC----ATT-----------TTTGA----GTTGACTTGA--GTTATG--AAATTTATTG--------------ATA-TTTTGGCTTTTTACCATTGTTGAT-TTTACATGA-C------TTTTAAGTTTT------T-AAAATCA--------------------------ACGGCACT-TGTCATTCAA-ACTC---------------------------------AAGGATATGAA---TATAAGAC---------ATCTGAT--------TATTTTTA-----TGA---TTGCAAT---TATGCAGGATTCTCAGAACGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGASizeHit CountTotal NormTotal
No Reads
droEle1
TTCCA-AC--CC-----ATACAAACAAAA-TCCATAGTAGACCATGA---------------------------AAT--------------------------------------------TC----GTT-----------TTTAA----GTTAACTTCA--GTTCT---TATTTTAGTG--------------ATA-TTTTGGCTTTTTACCATTGTTGAT-TTGACATAAAC------TTTTAAGTTTTGG---TT-TCAATCG--------------------------ACGGCACT-TGTCATTCGG-AGTC---------------------------------AATAATAA-TAATTGTCTAGAATAACATAACATAACAT--------AACATTTT-----TTA---ACGAAAT---TCTGTAGGATTCTCAGAACGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGASizeHit CountTotal NormTotal
No Reads
droRho1
TTTTAAGA--AC-----ATATAAAAGAAA-TCCATGGTAGAACATGA---------------------------AAT--------------------------------------------CC----ATT-----------TATGA----GTTGACTTGA--GATCT---AATTTTAATG--------------ATA-TTTTGGCTTTTTAACATTGTTGAT-TTTACATAAAC------TTTTAAGTTAT------TCAAAATCG--------------------------ACGGCACT-TGTCATTCGG-AATC---------------------------------AAGGATATGAATAATTGTAGAT---------ATGTGAT--------AATATTTTAAACGTGA---TTGAAAC---TCTGCAGGATTCTCAGAACGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGASizeHit CountTotal NormTotal
No Reads
droFic1
TATAG-A---CC-----AT--------ACCTCCATAGTAA----------------------------------CAT--------------------------------------------CC----CTT-----------TCTGA----GTTGACATAA--GTTTA---AGTTTAAGTG--------------ATA-TTTTGGCTTCTTACCAT---TGAT-TTTACATGATG------TTTTGAGTTTC------C-AAAATCG--------------------------ACGGCACT-TGTCATTTCA-ACTC---------------------------------GAGGACGTGAACAGTTTTAGAT---------TTCTGAT--------TTAATTTT-----TAA---TCATAAC---TCTGCAGGATTCTCAGAACGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGASizeHit CountTotal NormTotal
No Reads
droKik1
CATAA-GAAGCC-----ATGT--------------AGATGAAAATTG---------------------------AGAATATTCC-----------------------------------------TTGGTTGATATTCGTTTTTGG------------------------------------------------------TTGGCTTTTTACCACTTTTGATTTTTACATAAAG------TGTTTAGTTTT------T-TAAATCA--------------------------ACGGCACTTTGTCATTTCTAATTT------------------------G--------GGAACTCT-TT-CAT--CCGGG---------ATGTAAT--------GGTGTTTT-----TGA---CTTTAACTCCTCTGCAGGATTCTCAGAACGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGASizeHit CountTotal NormTotal
No Reads
droAna3
TATTT-AA--ACG----A---------AA-------------CTGGA---------------------------AAC---------------------------------------------G----AGT-----------TAAG--------AACTTGA--TTTAT---TCTTTAAATG--------------ATAATTTATGCTTATTATCATTCTTGAT-TTTACATGATG------TTTTATATTTTTA---TTTTAATGCG--------------------------ACGGCACT-TGTCATTCCA-CTTGG--------------A---ATTT---------------GCA-TG--AATT---TG---------ATCTAAT--------A-TCTTAC-----TGA---T-CTGAA---TCCACAGGATTCTCA---CGACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATTGATTTGGATGGT.....2111.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATTGATTTGGATGGTCC...2311.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCA---CGACGAGAAACGTAACT......................2111.001000010
.....................................................................................................................................................................................................................................................TATTTTTA---TTTTAATGCA--------------------------.............................................................................................................................................................................................18200.051000100
droBip1
TATTT-AA--ACGAAACAT--------AA-----AACTAGAAGA-------------------------------------------------------------------------------------T-----------AGTCA-----AAGACTTGA--TTTAT---AATTTAAATG--------------ATAATTTATGCTTATTATCATTCTTGAT-TTTACATGAAA------TTATGAATTTTTA---TTTTAATGCG--------------------------ACGGCACT-TGTCATTCCA-ATTAA--------------A---ATTT---------------GCA-TG--AATT---TG---------ATCTAAT--------ACTG-GAC-----TGA---T-CTAAA---TCCCTAGGATTCTCAAAACGATGAGAAACGTAACTCAATTGATTTGGATGGTCCCGASizeHit CountTotal NormTotal
No Reads
dp5
TTTTG-GA--TCC----A------------TCCAT--TCGTACATCA---------------------------AAT--------------------------------------------T-----AGT-----------TGTGA-----TTGATTTGATGGTTATT--GCTTTTATAA--------------ATA-TTTTCGCTTTTTGACAA---TGAG-TTTACATGAAC------TTTTCTGTTTT------TTAAAATCA--------------------------ACGGCACT-TGTCATTCGT-AGAT-----------------------AGGTC--------------TACATTTCTATTG---------TTCTGAT--------AATATTTA-----TGT---TCGTTAC--TTCTGCAGGAGTCTCATAACGATGAGAAACGTAACTCAATTGATTCGGACGGTCCCGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATTGATTCGGACG.......1912.0020000101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAATTGATTCGGACG.......1811.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATTGATTCGGACGGT.....2111.0010000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATAACGATGAGAAACGT..........................2011.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAACGATGAGAAACGTAACT......................2211.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAATTGATTCGGACGGT.....1911.0010000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTGATTCGGACGGTCCC..2011.0010000000010
droPer2
TTTTG-GA--TCC----A------------TCCAT--TCGTACATCA---------------------------AAT--------------------------------------------T-----AGT-----------TGTGA-----TTGATTTGATGGTTATT--GGTTTTATAA--------------ATA-TTTTCGCTTTTTGACAA---TGAG-TTTACATGAAC------TTTTCTGTTTT------TTAAAATCA--------------------------ACGGCACT-TGTCATTCGT-AGAT-----------------------AGGTC--------------TACATTTCTATTG---------TTCTGAT--------AATATTTA-----TGT---TCGTTAC--TTCTGCAGGAGTCTCATAACGATGAGAAACGTAACTCAATTGATTCGGACGGTCCCGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGTAACTCAATTGATTCGGACG.......2613.003300000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGAGAAACGTAACTC.....................1812.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATTGATTCGGACGGTCCC..2412.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATTGATTCGGACG.......1912.002200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATTCGGACGGTCCCGA2011.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATTGATTCGGACGG......2011.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATTGATTCGGACGGTCC...2311.001001000
droWil2
TTTTA-AT--ATT----AT------------TAAAATAAGT------ATTGAAA-----------------------ATATTTCAGGAAAAGATCATAAAAGAAAAAGAATTCATCGAATTTT--------AATAATTAATTTTGA----TTT-TATTATTATTTCTC--AATGTTGAAACTTGTGTT---------------GAATGTTTATAA------TTTTTACACATAA------TTTATAGTTTT------A-ACCATCA------------------------AAAAGGCACA-GTACATTATT-TAAT-----------------------AAGTC----------TT---AAGTATTTATTA---------ATCACAT---ATTATAACC--AA-----TGAA--TTCTATA---TTGACAGGATTCTCAAAATGATGAGAAACGTAATTCAATTGACTCAGATGGTCCAGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAATTGACTCAGATGGT.....2012.00200020
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTGACTCAGATGGTCCA..2011.00101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGAGAAACGTAATTC.....................2111.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGATGAGAAACGTAAT.......................2011.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGATGAGAAACGTA.........................1811.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAATTGACTCAGATGGT.....2111.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGAGAAACGTAATTCAATT.................2411.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAATGATGAGAAACGTAATT......................2211.00100100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAATGATGAGAAACGTA.........................1911.00100100
..................................................................................................................................................................................AACTTGTGTT---------------GAATGTTTATAA------TTT.................................................................................................................................................................................................................................................................2511.00101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAATTGACTCAGATGGTC....2111.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGAGAAACGTAATTCAAT..................2311.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTCAATTGACTCAGATGGTCC...2511.00110000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTCAATTGACTCAGAT........2011.00110000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGAGAAACGTAATT......................2011.00100010
droVir3
TTTTT-TT--CTC----AT--------AAATTTACAG--GT------ATTGTCATCTCAAATCTA------AAA---GCAAC----------------------------------------C----G--------TT---CAT-GTTGGTTTTATATTA--TTTTTAAAATTTCTTAAGATTTTGTT---------------------------TGTCGTT-TTTAA----AC------T-----------------TTAGTTCGTCTATAAAATTCCAATT-----------TTCATC-AAACATACAA-ATTT----A----------A---AAA--A-AC-----AAATCTAT-TTTCGCTGATGAA---------AAATTTC--------ATTCCGAC-----T--------CTTT---AATACAGGATACTCAAAATGAAGAAAAACGTAATTCTATCCAATCAGATGGTGCAGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAAATGAAGAAAAACGTAATT......................2511.001000010000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAATGAAGAAAAACGTAAT.......................2211.001000000000000000000000000000000000000001000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACGTAATTCTATCCAATCA...........2211.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAATCAGATGGTGCAGA2011.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAAATGAAGAAAAACGTAATTCTA...................2811.001000000000000000000000000000100000000000000000000000000000000000
droMoj3
TATAT-AA--AAAAAATAT-----AT-AAATATATACTTAAATATTT---------------------------AAAACATTTT-------------------------------------------TATATATATTTTT-TTTTA----ATTTTCTTTA--ATTAT---GTATACCCTA---TTATTGAATTTTTA-TTTTAATTTTT----------------TACATATACATATATT-TTGTA---------------TTTT--------------------------CTTTTAAT-TGTTATTCAA-ATCGATTTATCGAATTTTGAGCT----AATTC----------AC---A--------ATA---------ATTTAATATT-----TATA-TTT-----TAC---ATACTCC---TCTATAGGATACTTTAAGCGAAGAGAAACGCAATTCTATAGACTCAGATGGTCCAGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAACGCAATTCTATAGACT.............2311.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTCTATAGACTCAGAT........1911.001100000
droGri2
CTGCC-AT--T----------------A------AGCAGGT------GTCGTAAGCTAAACTAAAGCTTCCAAA---TCAA------------------------AGCTTACCATCGTATACTCTTTATT-----------TATT----------CTTAA--TTTTT---TTTT-------------------------------------------TTTGT-TTTACTTAA-T------TTTCATTCCTTTAAATTTTCAGTGCGATTACAAAATTCTGTTTTTGTTAAAAATGGCACG-GTTGTAAATG-AGAA-----------------------AAGTTTATTATGGATATTGAACAATTCC-------------------T--------TTCT--TA-----TGTATACTCAAAT---CAAACAGGATACTCATAACGAAGAGAAACGTAATTCAATTGATTCAGATGGTCCTGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......T--T----------------A------AGCAGGT------GTCGTAAGCTAAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110

Generated: 05/18/2015 at 07:51 PM