dsi_5767

CAACACACCACTACCACTTTCCACAACAGAAACAGATACAGATACAGATGCAGTACCAGTTAGGGCAACAGCCATAGGGGATAGAGTATTGGCTAAGGAACGATCGCGTTTAGTTGGTAGTAGCCATGGTAGTAGTAACGAAAAGCCCCTTCCCGAATCATACACAACAAGAACACCAACAATCGCATCTCTATATCCAGCAGCTCATACACCAACACAAACCTCATCCACAATCCCAACAACATCGACTTCG ************************************************.....((..(((.(((....))).))).))........((((.((.(((..(((.(((.((.((((((.((.......((.(((....((..(((...)))..)).....))))).......)))))))))).))))))))).)).))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	M053 female body	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	M023 head
..................................................................................................................................................................................................................................TCCACAATCCCAACAACATCGACTTC.	26	0	1	1.00	1	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................CATACACCAACACAAACCTCATCCACA.....................	27	0	1	1.00	1	0	0	1	0	0	0	0	0
...........TACAACTTTCAACAACGGA...............................................................................................................................................................................................................................	19	3	20	0.65	13	0	2	0	0	11	0	0	0
..........................................................................................................................GCCATGGTAGTAGCA....................................................................................................................	15	1	10	0.50	5	3	0	0	0	0	0	2	0
.........................................................................................................................AGCCATGGTAGTAGCA....................................................................................................................	16	1	4	0.50	2	2	0	0	0	0	0	0	0
.......................................................................CCATAGGGGGTAGAGCACTG..................................................................................................................................................................	20	3	2	0.50	1	0	1	0	0	0	0	0	0
.......................................................................CCATAGGGGGTAGAGCA.....................................................................................................................................................................	17	2	4	0.25	1	0	1	0	0	0	0	0	0
...............................................................................GATAGAGTATTGGCC...............................................................................................................................................................	15	1	5	0.20	1	0	0	0	0	0	1	0	0
..................................................................................................................TGGTAGTAGCGGTGGTAGTA.......................................................................................................................	20	2	5	0.20	1	1	0	0	0	0	0	0	0
.............................................................AAGGCAGCAGCCATAAGGGAT...........................................................................................................................................................................	21	3	6	0.17	1	0	0	0	0	0	0	0	1
............................................................................................................................CATGGAGGTAGTGACGAAAA.............................................................................................................	20	3	6	0.17	1	0	1	0	0	0	0	0	0
......................................................................ACCATAGGGGGTAGAG.......................................................................................................................................................................	16	2	9	0.11	1	0	0	0	0	0	1	0	0
.............................................................................................................TGAGTTGGTAGTAGC.................................................................................................................................	15	1	11	0.09	1	1	0	0	0	0	0	0	0
......................................................................................................................ACTAGCCCTGGTAGTAGCA....................................................................................................................	19	3	13	0.08	1	1	0	0	0	0	0	0	0
.......................................................................CCATAGGGGGTAGAGC......................................................................................................................................................................	16	2	13	0.08	1	0	1	0	0	0	0	0	0
....................................................GTACCTGTTAGGGCACC........................................................................................................................................................................................	17	2	14	0.07	1	1	0	0	0	0	0	0	0
....................................................................................................CGATCGCGTGTTGTTGG........................................................................................................................................	17	2	14	0.07	1	1	0	0	0	0	0	0	0
...TACACCACTAACGCTTTCC.......................................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	1	0	0	0	0	0

GTTGTGTGGTGATGGTGAAAGGTGTTGTCTTTGTCTATGTCTATGTCTACGTCATGGTCAATCCCGTTGTCGGTATCCCCTATCTCATAACCGATTCCTTGCTAGCGCAAATCAACCATCATCGGTACCATCATCATTGCTTTTCGGGGAAGGGCTTAGTATGTGTTGTTCTTGTGGTTGTTAGCGTAGAGATATAGGTCGTCGAGTATGTGGTTGTGTTTGGAGTAGGTGTTAGGGTTGTTGTAGCTGAAGC ************************************************.....((..(((.(((....))).))).))........((((.((.(((..(((.(((.((.((((((.((.......((.(((....((..(((...)))..)).....))))).......)))))))))).))))))))).)).))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
.............................................................................................................................................................................GTGGTTGTTAGCGTAGAGATA...........................................................	21	0	1	1.00	1	1	0	0	0	0
........................................................................................................................................................................................................................................TAGGGTTGTTGCAGAGGAAGC	21	3	2	0.50	1	0	1	0	0	0
....TGTGGGGATGGTGGAAGGT......................................................................................................................................................................................................................................	19	2	2	0.50	1	0	1	0	0	0
..........................................................................................................................................................................................................................TTTGGAGTGGGTGTTAGGGC...............	20	2	3	0.33	1	0	0	1	0	0
..................................................................................................................................................................................................................................AGGTGTTCTGGTCGTTGTAGCT.....	22	3	4	0.25	1	0	0	0	1	0
...............................................................................................................................................................TATGTGTTGTTCTAGATGTTGT........................................................................	22	3	5	0.20	1	0	0	1	0	0
................................................AGGTCATGGACAATGCCGT..........................................................................................................................................................................................	19	3	18	0.11	2	0	0	0	0	2
................GGAAGGTTTTGTCATTGTCT.........................................................................................................................................................................................................................	20	3	15	0.07	1	1	0	0	0	0
..................AAGGTGTCGTCCTTGTCTG........................................................................................................................................................................................................................	19	3	20	0.05	1	0	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:17840745-17840997 -	dsi_5767	CAACACACCAC-----------------------------------TACCA---------CTTTC--------------------CACAACAGAA---ACAGATAC--------------------AGATACAGATG------CAGTACCAGT-----------------------------------TAGGGCAAC---AGCCATAGGGGATAG-----------------A------GTATTGGCTAAGGAACGATCGCGTTTAGTTGGTAGTAGCCAT------------------------------G---GTAGTA---GTAACGAAAAGC------CCCTTC-----CCGA--ATCATACACAACAAGA------------ACACCAAC--------------------------------------------AATCGCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAATCCCAACAACATCGACT--TCG------------------------
droSec2	scaffold_9:617275-617521 -		CAACACACCAC-----------------------------------TACCA---------CTTTC--------------------CACAACAGAA---ACAGATAC--------------------------AGATA------CAGTACCAGT-----------------------------------TAGGGCAAC---AGCCGTAGAGGATAG-----------------A------GTATTGGCTAAGGATCGATCGCGTTTAGTTGGTAGTAGCAAT------------------------------G---GTAGCA---ATAACGAAAAGC------CCCTCC-----CCGA--ATCATACACAACAAGA------------ACACCAAC--------------------------------------------AATCGCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAATCCCAACAACATCGACT--TCG------------------------
dm3	chr2R:17286036-17286291 -		CAACACACCAC-----------------------------------TACCA---------CTTTC--------------------CACAACAGAA---ACAGAAAC--------------------AGAAACAGATA------CAGTACCAGT-----------------------------------TAGGGCAAC---AGCCATAGAGGTTAG-----------------A------GTATTGGCTAAGGATCGTTCGCGTTTAGTTGGTAGTAGCAAT------------------------------GGTAGTAGCA---ATAACGAAAAGC------CCCACC-----CCGA--ATCATACACAACAAGA------------ACACCAAC--------------------------------------------AATCGCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAATCCCAACAACATCGACT--TCG------------------------
droEre2	scaffold_4845:11430541-11430793 -		CAACACACCAC-----------------------------------TACCA---------CTATC--------------------AACAACAGAA---ACAGATACAGATAC-----------------TACAGATA------CAGTACCAGT-----------------------------------TAGAGCAAC---AGCCATAGAGGATAG-----------------A------GTATCGGCTAAGGATCGATCGAGTTTAGTTAGCAGTAGCCAT------------------------------------AGCA---TTAACGAGAAGC------CCCTCC-----CCAA--ATCATACACAACAAGA------------ACACCAAC--------------------------------------------AATCGCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAATCCCAACAACATCGAGT--TCG------------------------
droYak3	2R:11900708-11900993 +		CAACACACCAC-----------------------------------TACCA---------CTTTC--------------------AACAACAGAA---ACAGATACAGAAAC--ATA------------TAAAGATA------CAGTTACAGA------TACAGTACCA---------GTACC--AGTTAGAACATC---ATCAATAGAAGATAG-----------------A------GTGTCGGCTAAGGATCGATCGAGTTTAGTTAGTAGTAGCGAT------------------------------------AGCA---TTAACGAAAAGC------CCCTCC-----CCGA--ATCATACACAACCAGA------------ACACCAAC--------------------------------------------AATCGCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAATCCCAACAACATCGAGT--TCGAGTTCGAGT------------TCG
droEug1	scf7180000409474:655716-655978 +		CAACAGACA-C-----------------------------------CATCA-CACCACAATTTCC--------------------AAAAACAGTT---ACAGAAAC--------------------AGTAACAGTTT------CAGTTTCAGT-----------------------------------TTCATCATCTGAAGATATAGAAGATAT-----------------A------GTTTTAGCTAAGGATCGTTCGAGTTTAGTTAGTAGTAATGTT------------------------------------AGCA---TTAACGACAATC------CCCTTC-----CCGA--AACATACACAACAACA---------CCAACAACAAC--------------------------------------------AATCGCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAACCC---------------TCATCCACAACCTCAACAACTTCGAGT--ACC------------------------
droBia1	scf7180000302143:1113634-1113874 +		AAACACACCAC-----------------------------------TACTT---------ATTCC--------------------AACCACAGAA---ACCGATAC--------------------AGTTACAGTTA------CAGCATCAGA-----------------------------------TATA------------------GATAG-----------------A------GTATTAGCTAAGGATCGAACGAGTTTAGTTAGTAGTAATTTA------------------------------------AATA---TTAACGACCACT------CCCTTC-----CAAA--ATCATACACAACAACA------------ACACCAACAA--------------------------------------AACAAATCGCATCTCTATATC---CAGCAGCTCAT------ACACCAACACTACCC---------------TCATCCACAATCTCAACAACCTCGAGT--TCT------------------------
droTak1	scf7180000415722:187472-187721 -		AAACACACCAC-----------------------------------CACCACCACTACAATTTTC--------------------AACAACAGAA---ACAGATAC--------------------AGAAACAGATT------CAGCATCAGA-----------------------------------TATA------------------GATCA-----------------A------GTATTAGCTAAGGATCGATCGAATTTAGTTAGTAGTAACATT------------------------------------AGCA---TTAACGAAAGTC------CCCTCC-----CAAG--ATCATACACAACAACA---------CCAACAACAAC--------------------------------------------AATCGCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAATCTCAACAACATCGAGT--TCT---------------------TCG
droEle1	scf7180000491232:79766-80014 +		AAACACACCAC-----------------------------------TTCC-----------------------------------AACAACAGAT---ACAGCTAC--------------------AGCTACAGCTACAGATACAGTAACAGT-----------------------------------TATAGATAC------------AGATAG-----------------A------GTACCAGCTAAAGATCGATCGAATTTAGTTATTAGTTACATT------------------------------------AGCA---TTAACGACAATTCAGCACCCTTTC---CCCCAA--ATCATACACAACAACA------------ACACCAAC--------------------------------------------AATCGCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAACCTCAACAACTTCGAGT--TCG------------------------
droRho1	scf7180000780265:72995-73261 +		AAACACACCAT-----------------------------------TTCC-----------------------------------AACAACAGAT---ACAGATAC--------------------AGTAACAGTTA------CAGCATCAGA-----------------------------------TAA------------------AGATAG-----------------T------ATTTCAGCTAAAAATCGATCGAATTTAGTTATTAGTTACATT------------------------------------AGCA---TTAACGACCATTCAACCCCCCTCCCTCCCTCGA--ATCATACAAAACAACA---------CCAACAACAAC--------------------------------------------AATCGCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAAACC---------------CCATCCACAATCTCAACAACTTCGAGT--TCGAGTTCGAGTTCGAGTCCGAGTTCG
droFic1	scf7180000453201:286928-287171 +		AAACACACCAA-----------------------------------TCCC-----------------------------------AACAACAAATACCACAGATAC--------------------AGATACAGATA------CAGTTACAGT-----------------------------------TACAGCCAC---AG--ATAG-AGATAG-----------------A------ATATCAGCTAAAGATCGATCGAGTTTAGTTAGTAGTTACATT------------------------------------AGTG---TTAACGACAAATC-----CCCTAC-----CCAAAGATCATACACACCA---------------ACAACAAC--------------------------------------------AATCGCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAATTTCAACAACCTCGAGT--TCG------------------------
droKik1	scf7180000302411:532251-532516 -		CAACACACAAA-----------------------------------CTCCAACA------GTTTTAA-CAATCCC----------AAAAACAGAT---ACAGATAC--------------------AGATACAAATA------CAGAAACAGC-----------------------------------TGTAGCCAG---AGGTCT---AGATAG-----------------ATTCTTAGTAACAGTCACCGCCCGTTCGAGTTTAGTTAGTAATTATAGT------------------------------A---GCATTA---GTAGCGACCATC---------CAT-----CCAA--TTCATACACAACAACA------------CCAACAAC--------------------------------------------AATCGCATCTCTATATC---CAGCAGCTCAT------TTACCACCACAAACC---------------TCATCCACGACCTCAACGACAACAACTGTT-C------------------------
droAna3	scaffold_13266:5100290-5100546 -		CAACACAAAAG-------------------------------------CCA---------ACCCC--------------------AAAAACAGTA---ACAGATACAGCT--TTAAATACAGATACAGATACAAATACAGATACTA---C------------------A---------GTCAC--AGTTATAGATT------------------CAGATACAGTTAGGTTAGA-----------TG------------CTAATTTAGTTAATAGA--------------------------------------------------------------------------------CA--ATCATACACAACAACAACAACAAAT---ACAACAACCA-----------------------------ACACACCAACATCAATCGCATCTTTATATCCTTCAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAATCTCGACACCAACGACT--TCG------------------------
droBip1	scf7180000395751:906353-906595 -		CCAAAAAC-----------------------------------------------------------------------------------AGTA---ACAGCTACAGTT--TCCGATACAGATACAGTTACAGATACAGATACAGGCACAGT-----------------------------------TACAGATAC---AG---------ATACAGATATAGTTAGGTTAGA-----------AG------------CTAATTTAGTTAATAGTC--------------------------------------------------------------------------------A--ATCATACACAACAACA------------ACAACAACAA-----------------------------ACACACCAACATCAATCGCATCTCTATATCCTTCAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAATCTCGACACCAACGACT--GCGAATTGGAAC---------------
dp5	3:15557341-15557608 -		CACCACACCACACACTTTAGTTCTCCCATCTCAA-----------------ACA------GTTAC----------ACCACCAAAA----------GATACAGATACAACAAC-----------------AACAGATA------CAACAACAGA-----------------------------------TGTA------------------GTTACAGTCATTGCCAGGATAGA------TTA-----------------TAGTTACGTTAGATCTAGAGCC------------------------------AACAACAACA---CTAACAACAATT------CATTC-------------------ACAACATCTACAAGAACACCAACACCAAC--------------------------------------------AACCCCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAACCTCGACAACAACAACA--ACA------------------------
droPer2	scaffold_4:3490231-3490495 +	dpe_1588	CACCACACCACACACCTTAGTTCTCCCATCTCAA-----------------ACA------GTTAC----------ACCACCAAGA----------GATACAGATACAACAAC-----------------AACAGACA------CAGATACAGA-----------------------------------TGTA------------------GTTACAGTCATTGCCAGGATAGA------TTAT-----------------AGTTACGTTAGATCTAGAGCC------------------------------A---ACAACA---CTAACAACAATT------CATTC-------------------ACAACATCTACAAGAACACCAACACCAAC--------------------------------------------AACCCCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAACCTCGACAACAACAACA--ACA------------------------
droWil2	scf2_1100000005648:508-724 -		AATTGCAGCAA-----------------------------------CAACA---------ACAAC--------------------AGCAGCAACA---ACAACAGC--------------------AGCAGCAACAA------CAGCATCAGC-----------------------------------AACAGCAAC---AGCAGCAACGAAT---------------------------------------------------------GCAACAGCAACAGCAACAGCAGCAACAAT------------T------GCA---GC----------------------------AAC--AACAACAACAGCAACA------------ACAACAAC--------------------------------------------AGCAGCAACAACAACAG---CAGCAGCAACA------ACAGCAACAACAACA---------------GCAGCAGCAACAGCAACAACAGCAGCA--GCA------------------------
droVir3	scaffold_12875:17967949-17968187 +	dvi_7615	CCTCAAACCTAGCGCC----------CCTTTCAGATAAACAGACAAAGCCA--ACAATA-ACTTTAATTAGTTAC----------AACAACAGCC---ACAGCAAC--------------------AAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACG---CGAACAACAACC------AC--C-------------------ACGACAACAACAACAACAACAAC---AACCGTCATATTATTGCCATTAATAATAACTTACACA---CAACAACAACAACATCTTTATATC---CAGCAGCTAAC------ACGCCAACACCAACA---------------ACACCAACAACAACCACAACA---ACA--CAA------------------------
droMoj3	scaffold_6473:10518646-10518898 -		AGCTGCAACAT-----------------------------------CAGCA---------GTTGC--------------------AACAACAGCA---GCAACAGC--------------------AGCAGCAACAG------CAGCAGAAGCAACAACAGCAGCAGCAGCAACAACAGTA--GCAGC------AGC---AGCAA---CAT---CAGC--------------------------------------------AATAG----------CA------------------ACAGTAGCAGCAATCGA---AATAGTAATAGG--AGAAAC----------------------AGCAGCCACAGCATCAACAAAG------ACAAGAAC--------------------------------------------AGCTGCAACAGCAACAG---CAGCAACTGCA------GCAGCAGCAGCAACT---------------GCAGCAACTATAACAACAGCAGCAGCA--GCA------------------------
droGri2	scaffold_15203:1310135-1310378 -		AAGAGCAACAA-----------------------------------CAACA---------TCAAC--------------------AACAACAGCA---ACAACAAC--------------------AGCAACAACAA------CTGCAACAACAAGAGCAACAGCAAGAGCAACAACAAGA--GCAAC------AGC---AAGAG---CAA---CAAC---------------------------------------------------AAC---AGCG------------------AC------------A---ACAACA---GCAA---------------------------------CAACAACAGCAACAACA---------ACAACAGC--------------------------------------------AAATGCAGC---AAATG---CAGCAGCAACAACTGCATCACCAGCAGCAACTGCAGCAGGACCACCCACGTCAACAGGAGCAACTGCAGCAGCA--GGA------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CAACACACCAC-----------------------------------TACCA---------CTTTC--------------------CACAACAGAA---ACAGATAC--------------------AGATACAGATG------CAGTACCAGT-----------------------------------TAGGGCAAC---AGCCATAGGGGATAG-----------------A------GTATTGGCTAAGGAACGATCGCGTTTAGTTGGTAGTAGCCAT------------------------------G---GTAGTA---GTAACGAAAAGC------CCCTTC-----CCGA--ATCATACACAACAAGA------------ACACCAAC--------------------------------------------AATCGCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAATCCCAACAACATCGACT--TCG------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACAATCCCAACAACATCGACT--TC.........................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT------ACACCAACACAAACC---------------TCATCCACA...............................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................GATAG-----------------A------GTATTGGCC..........................................................................................................................................................................................................................................................................................................................	15	5	0.20	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSec2

CAACACACCAC-----------------------------------TACCA---------CTTTC--------------------CACAACAGAA---ACAGATAC--------------------------AGATA------CAGTACCAGT-----------------------------------TAGGGCAAC---AGCCGTAGAGGATAG-----------------A------GTATTGGCTAAGGATCGATCGCGTTTAGTTGGTAGTAGCAAT------------------------------G---GTAGCA---ATAACGAAAAGC------CCCTCC-----CCGA--ATCATACACAACAAGA------------ACACCAAC--------------------------------------------AATCGCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAATCCCAACAACATCGACT--TCG------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

CAACACACCAC-----------------------------------TACCA---------CTTTC--------------------CACAACAGAA---ACAGAAAC--------------------AGAAACAGATA------CAGTACCAGT-----------------------------------TAGGGCAAC---AGCCATAGAGGTTAG-----------------A------GTATTGGCTAAGGATCGTTCGCGTTTAGTTGGTAGTAGCAAT------------------------------GGTAGTAGCA---ATAACGAAAAGC------CCCACC-----CCGA--ATCATACACAACAAGA------------ACACCAAC--------------------------------------------AATCGCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAATCCCAACAACATCGACT--TCG------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAAACC---------------TCATCCACAA..............................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TAGCAAT------------------------------GGTAGTAGCA---A.............................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATC---CAGCAGCTCAT------ACACCA................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCCACAATCCCAACAACATCG................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACC---------------TCATCCACAATCCCAACA......................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................GGCTAAGGATCGTTCGCGTTTAGTT.....................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATC---CAGCAGCTCAT------ACAC..................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCCCAACAACATCGACT--...........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................................................................................................................................................................................................C--------------------------------------------AATCGCATCTCTATATC---CAG....................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCATCTCTATATC---CAGCAGCTCA.............................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACAATCCCAACAACATC.................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAACC---------------TCATCCACAATCC...........................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................CAAC--------------------------------------------AATCGCATCTCTATATC---CAG....................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TTGGTAGTAGCAAT------------------------------C..........................................................................................................................................................................................................................................................	15	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................AGAA---ACAGAAAC--------------------AGAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CAACACACCAC-----------------------------------TACCA---------CTATC--------------------AACAACAGAA---ACAGATACAGATAC-----------------TACAGATA------CAGTACCAGT-----------------------------------TAGAGCAAC---AGCCATAGAGGATAG-----------------A------GTATCGGCTAAGGATCGATCGAGTTTAGTTAGCAGTAGCCAT------------------------------------AGCA---TTAACGAGAAGC------CCCTCC-----CCAA--ATCATACACAACAAGA------------ACACCAAC--------------------------------------------AATCGCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAATCCCAACAACATCGAGT--TCG------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCACAATCCCAACAACATCGA...............................	24	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................A------------ACACCAAC--------------------------------------------AATCGCATCTCTATATC---CAG....................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACAAACC---------------TCATCCACAAT.............................................	21	1	1.00	1	0	0	0	1	0	0	0
...............................................................................................................C-----------------TACAGATA------CAGTACCAGT-----------------------------------TAGAGCAAC---..........................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0

droYak3

CAACACACCAC-----------------------------------TACCA---------CTTTC--------------------AACAACAGAA---ACAGATACAGAAAC--ATA------------TAAAGATA------CAGTTACAGA------TACAGTACCA---------GTACC--AGTTAGAACATC---ATCAATAGAAGATAG-----------------A------GTGTCGGCTAAGGATCGATCGAGTTTAGTTAGTAGTAGCGAT------------------------------------AGCA---TTAACGAAAAGC------CCCTCC-----CCGA--ATCATACACAACCAGA------------ACACCAAC--------------------------------------------AATCGCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAATCCCAACAACATCGAGT--TCGAGTTCGAGT------------TCG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACAATCCCAACAACATCGAGT--TCGAG......................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAACAACATCGAGT--TCGAGT.....................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

CAACAGACA-C-----------------------------------CATCA-CACCACAATTTCC--------------------AAAAACAGTT---ACAGAAAC--------------------AGTAACAGTTT------CAGTTTCAGT-----------------------------------TTCATCATCTGAAGATATAGAAGATAT-----------------A------GTTTTAGCTAAGGATCGTTCGAGTTTAGTTAGTAGTAATGTT------------------------------------AGCA---TTAACGACAATC------CCCTTC-----CCGA--AACATACACAACAACA---------CCAACAACAAC--------------------------------------------AATCGCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAACCC---------------TCATCCACAACCTCAACAACTTCGAGT--ACC------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAACACACCAC-----------------------------------TACTT---------ATTCC--------------------AACCACAGAA---ACCGATAC--------------------AGTTACAGTTA------CAGCATCAGA-----------------------------------TATA------------------GATAG-----------------A------GTATTAGCTAAGGATCGAACGAGTTTAGTTAGTAGTAATTTA------------------------------------AATA---TTAACGACCACT------CCCTTC-----CAAA--ATCATACACAACAACA------------ACACCAACAA--------------------------------------AACAAATCGCATCTCTATATC---CAGCAGCTCAT------ACACCAACACTACCC---------------TCATCCACAATCTCAACAACCTCGAGT--TCT------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAACACACCAC-----------------------------------CACCACCACTACAATTTTC--------------------AACAACAGAA---ACAGATAC--------------------AGAAACAGATT------CAGCATCAGA-----------------------------------TATA------------------GATCA-----------------A------GTATTAGCTAAGGATCGATCGAATTTAGTTAGTAGTAACATT------------------------------------AGCA---TTAACGAAAGTC------CCCTCC-----CAAG--ATCATACACAACAACA---------CCAACAACAAC--------------------------------------------AATCGCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAATCTCAACAACATCGAGT--TCT---------------------TCG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAACACACCAC-----------------------------------TTCC-----------------------------------AACAACAGAT---ACAGCTAC--------------------AGCTACAGCTACAGATACAGTAACAGT-----------------------------------TATAGATAC------------AGATAG-----------------A------GTACCAGCTAAAGATCGATCGAATTTAGTTATTAGTTACATT------------------------------------AGCA---TTAACGACAATTCAGCACCCTTTC---CCCCAA--ATCATACACAACAACA------------ACACCAAC--------------------------------------------AATCGCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAACCTCAACAACTTCGAGT--TCG------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAACACACCAT-----------------------------------TTCC-----------------------------------AACAACAGAT---ACAGATAC--------------------AGTAACAGTTA------CAGCATCAGA-----------------------------------TAA------------------AGATAG-----------------T------ATTTCAGCTAAAAATCGATCGAATTTAGTTATTAGTTACATT------------------------------------AGCA---TTAACGACCATTCAACCCCCCTCCCTCCCTCGA--ATCATACAAAACAACA---------CCAACAACAAC--------------------------------------------AATCGCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAAACC---------------CCATCCACAATCTCAACAACTTCGAGT--TCGAGTTCGAGTTCGAGTCCGAGTTCG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAACACACCAA-----------------------------------TCCC-----------------------------------AACAACAAATACCACAGATAC--------------------AGATACAGATA------CAGTTACAGT-----------------------------------TACAGCCAC---AG--ATAG-AGATAG-----------------A------ATATCAGCTAAAGATCGATCGAGTTTAGTTAGTAGTTACATT------------------------------------AGTG---TTAACGACAAATC-----CCCTAC-----CCAAAGATCATACACACCA---------------ACAACAAC--------------------------------------------AATCGCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAATTTCAACAACCTCGAGT--TCG------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAACACACAAA-----------------------------------CTCCAACA------GTTTTAA-CAATCCC----------AAAAACAGAT---ACAGATAC--------------------AGATACAAATA------CAGAAACAGC-----------------------------------TGTAGCCAG---AGGTCT---AGATAG-----------------ATTCTTAGTAACAGTCACCGCCCGTTCGAGTTTAGTTAGTAATTATAGT------------------------------A---GCATTA---GTAGCGACCATC---------CAT-----CCAA--TTCATACACAACAACA------------CCAACAAC--------------------------------------------AATCGCATCTCTATATC---CAGCAGCTCAT------TTACCACCACAAACC---------------TCATCCACGACCTCAACGACAACAACTGTT-C------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CAACACAAAAG-------------------------------------CCA---------ACCCC--------------------AAAAACAGTA---ACAGATACAGCT--TTAAATACAGATACAGATACAAATACAGATACTA---C------------------A---------GTCAC--AGTTATAGATT------------------CAGATACAGTTAGGTTAGA-----------TG------------CTAATTTAGTTAATAGA--------------------------------------------------------------------------------CA--ATCATACACAACAACAACAACAAAT---ACAACAACCA-----------------------------ACACACCAACATCAATCGCATCTTTATATCCTTCAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAATCTCGACACCAACGACT--TCG------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACC---------------TCATCCACAATCTCGACACCAG..................................	26	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCACAATCTCGACACCAACGACT--...........................	26	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTCAT------ACACCAACACAA..........................................................................	20	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGCAGCTCAT------ACACCAA...............................................................................	20	1	1.00	1	1	0	0	0	0	0

droBip1

CCAAAAAC-----------------------------------------------------------------------------------AGTA---ACAGCTACAGTT--TCCGATACAGATACAGTTACAGATACAGATACAGGCACAGT-----------------------------------TACAGATAC---AG---------ATACAGATATAGTTAGGTTAGA-----------AG------------CTAATTTAGTTAATAGTC--------------------------------------------------------------------------------A--ATCATACACAACAACA------------ACAACAACAA-----------------------------ACACACCAACATCAATCGCATCTCTATATCCTTCAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAATCTCGACACCAACGACT--GCGAATTGGAAC---------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

CACCACACCACACACTTTAGTTCTCCCATCTCAA-----------------ACA------GTTAC----------ACCACCAAAA----------GATACAGATACAACAAC-----------------AACAGATA------CAACAACAGA-----------------------------------TGTA------------------GTTACAGTCATTGCCAGGATAGA------TTA-----------------TAGTTACGTTAGATCTAGAGCC------------------------------AACAACAACA---CTAACAACAATT------CATTC-------------------ACAACATCTACAAGAACACCAACACCAAC--------------------------------------------AACCCCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAACCTCGACAACAACAACA--ACA------------------------

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

CACCACACCACACACCTTAGTTCTCCCATCTCAA-----------------ACA------GTTAC----------ACCACCAAGA----------GATACAGATACAACAAC-----------------AACAGACA------CAGATACAGA-----------------------------------TGTA------------------GTTACAGTCATTGCCAGGATAGA------TTAT-----------------AGTTACGTTAGATCTAGAGCC------------------------------A---ACAACA---CTAACAACAATT------CATTC-------------------ACAACATCTACAAGAACACCAACACCAAC--------------------------------------------AACCCCATCTCTATATC---CAGCAGCTCAT------ACACCAACACAAACC---------------TCATCCACAACCTCGACAACAACAACA--ACA------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAT------ACACCAACACAAACC---------------TC......................................................	22	1	1.00	1	0	1	0	0	0	0

droWil2

AATTGCAGCAA-----------------------------------CAACA---------ACAAC--------------------AGCAGCAACA---ACAACAGC--------------------AGCAGCAACAA------CAGCATCAGC-----------------------------------AACAGCAAC---AGCAGCAACGAAT---------------------------------------------------------GCAACAGCAACAGCAACAGCAGCAACAAT------------T------GCA---GC----------------------------AAC--AACAACAACAGCAACA------------ACAACAAC--------------------------------------------AGCAGCAACAACAACAG---CAGCAGCAACA------ACAGCAACAACAACA---------------GCAGCAGCAACAGCAACAACAGCAGCA--GCA------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
AATTGCAGCAA-----------------------------------CAACA---------ACAAC--------------------AGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	10	0.20	2	0	2	0	0	0
........................................................................................................................................................................................................................................................................................................AAT------------T------GCA---GC----------------------------AAC--AACAACAACAGC...............................................................................................................................................................................................	24	10	0.20	2	0	2	0	0	0
.......................................................................................................................................................................................................................................................................................................................T------GCA---GC----------------------------AAC--AACAACAACAGCAACA------------ACA............................................................................................................................................................................	28	6	0.17	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACA---------------GCAGCAGC................................................	20	20	0.15	3	0	0	0	3	0
......................................................................................GCAGCAACA---ACAACAGC--------------------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	3	0
......................................................................................................................................................................................................................................................................................AACAGCAACAGCAGCAACA.........................................................................................................................................................................................................................................................................	19	20	0.15	3	0	0	0	3	0
.............................................................................................................................................................................................................CAACGAAT---------------------------------------------------------GCAACAGCAACAGCAAC...................................................................................................................................................................................................................................................................................	25	8	0.13	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................T------GCA---GC----------------------------AAC--AACAACAACAGCAACA------------...............................................................................................................................................................................	25	8	0.13	1	0	1	0	0	0
....................................................................................................................................................TCAGC-----------------------------------AACAGCAAC---AGCAGCAACGAA..............................................................................................................................................................................................................................................................................................................................................................	26	9	0.11	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................AAT------------T------GCA---GC----------------------------AAC--AACAACAACAG................................................................................................................................................................................................	23	10	0.10	1	0	1	0	0	0
..................................................................................................ACAACAGC--------------------AGCAGCAACAA------C..................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	2
.....................................................................................................................................................................................................................................................................................................AACAAT------------T------GCA---GC----------------------------AAC--AACAACAACAGC...............................................................................................................................................................................................	27	10	0.10	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAG---CAGCAGCAACA------AC....................................................................................	20	20	0.10	2	0	0	0	0	2
AATTGCAGCAA-----------------------------------CAACA---------ACAAC--------------------AG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	10	0.10	1	0	1	0	0	0
......................................................................................................................................................AGC-----------------------------------AACAGCAAC---AGCAGCAACG................................................................................................................................................................................................................................................................................................................................................................	22	11	0.09	1	0	0	0	1	0
...................................................................................................................................CAACAA------CAGCATCAGC-----------------------------------AACAGCAAC---AG........................................................................................................................................................................................................................................................................................................................................................................	27	12	0.08	1	0	1	0	0	0
......................................................................................................................................CAA------CAGCATCAGC-----------------------------------AACAGCAAC---AGCAG.....................................................................................................................................................................................................................................................................................................................................................................	27	12	0.08	1	0	0	0	1	0
...................................................................................................CAACAGC--------------------AGCAGCAACAA------CAGCATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................	27	12	0.08	1	0	0	0	1	0
AATTGCAGCAA-----------------------------------CAACA---------ACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	13	0.08	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................AAT------------T------GCA---GC----------------------------AAC--AACAACA....................................................................................................................................................................................................	19	13	0.08	1	0	0	0	1	0
...................................................................................................................................CAACAA------CAGCATCAGC-----------------------------------AACAGC................................................................................................................................................................................................................................................................................................................................................................................	22	14	0.07	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG---CAGCAGCAACA------ACAGCAACAA............................................................................	25	15	0.07	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................AGCAACAGCAACAGCAGCAACAAT------------T------....................................................................................................................................................................................................................................................	25	16	0.06	1	0	0	0	1	0
....................................................................................................................................................................................................................T---------------------------------------------------------GCAACAGCAACAGCAACAGCAGC.............................................................................................................................................................................................................................................................................	24	17	0.06	1	0	1	0	0	0
................................................................................................................................................AGCATCAGC-----------------------------------AACAGCAAC---AGCAG.....................................................................................................................................................................................................................................................................................................................................................................	23	17	0.06	1	0	1	0	0	0
......................................................................................................................................CAA------CAGCATCAGC-----------------------------------AACAGC................................................................................................................................................................................................................................................................................................................................................................................	19	17	0.06	1	0	0	0	1	0
...................................................................................................................................................ATCAGC-----------------------------------AACAGCAAC---AGCAGCAAC.................................................................................................................................................................................................................................................................................................................................................................	24	19	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACA------ACAGCAACAACAACA---------------GCA.....................................................	26	19	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAACAGCAGCA--G..........................	19	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAGCAACAACAGCAG...............................	24	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAACAACAGCAGCA--GC.........................	26	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA---------------GCAGCAGCAACAGCA.........................................	22	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA------ACAGCAACAACAACA---------------GCAGCA..................................................	25	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................CAACAGCAACAGCAACAGCAG..............................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..........................................................................................CAACA---ACAACAGC--------------------AGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................AACAAT------------T------GCA---GC----------------------------AAC--AACAACAG...................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
..............................................................................................A---ACAACAGC--------------------AGCAGCAACAA------...................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG---CAGCAGCAACA------ACAGCAACA.............................................................................	25	20	0.05	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACA---------------GCAGCAGCAACA............................................	21	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACA---------------GCAGCAGCAACAG...........................................	22	20	0.05	1	0	0	0	1	0
...............................................................AC--------------------AGCAGCAACA---ACAACAGC--------------------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACA---------------GCAGCAGCAA..............................................	20	20	0.05	1	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------GCAGCAGCAACAGCAACAA.....................................	21	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAG---CAGCAGCAACA------A.....................................................................................	20	20	0.05	1	0	0	0	1	0
......................................................................................................................................................AGC-----------------------------------AACAGCAAC---AGCAGCA...................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................ACAAC--------------------------------------------AGCAGCAACAACAACA...........................................................................................................	21	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------ACAGCAACAACAACA---------------GCAGCAGCA...............................................	25	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................AGCAACAGCAGCAACAAT------------T------G...................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAACA------------ACAACA.........................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................ACA------------ACAACAAC--------------------------------------------AGCAGCAA...................................................................................................................	19	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACA---------------GCAGCAGCAA..............................................	19	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA------ACAGCAACAACAACA---------------GCAGCA..................................................	26	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAG---CAGCAGC................................................................................................	19	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAG---CAGCAGCAACA------ACA...................................................................................	23	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................AACAGCAACAGCAACAGCAGC.............................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1

droVir3

CCTCAAACCTAGCGCC----------CCTTTCAGATAAACAGACAAAGCCA--ACAATA-ACTTTAATTAGTTAC----------AACAACAGCC---ACAGCAAC--------------------AAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACG---CGAACAACAACC------AC--C-------------------ACGACAACAACAACAACAACAAC---AACCGTCATATTATTGCCATTAATAATAACTTACACA---CAACAACAACAACATCTTTATATC---CAGCAGCTAAC------ACGCCAACACCAACA---------------ACACCAACAACAACCACAACA---ACA--CAA------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCTTTATATC---CAGCA..................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATC---CAGCAGCTAAC------ACG...................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................TAC----------AACAACAGCC---ACAGCAAC--------------------AAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC..................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC------ACGCCAACACCAACA---------------ACACC...................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAAC---AACCGTCA..................................................................................................................................................................	21	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCAACAACAACCACA......................................	18	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAAC---AACCG.....................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGCTGCAACAT-----------------------------------CAGCA---------GTTGC--------------------AACAACAGCA---GCAACAGC--------------------AGCAGCAACAG------CAGCAGAAGCAACAACAGCAGCAGCAGCAACAACAGTA--GCAGC------AGC---AGCAA---CAT---CAGC--------------------------------------------AATAG----------CA------------------ACAGTAGCAGCAATCGA---AATAGTAATAGG--AGAAAC----------------------AGCAGCCACAGCATCAACAAAG------ACAAGAAC--------------------------------------------AGCTGCAACAGCAACAG---CAGCAACTGCA------GCAGCAGCAGCAACT---------------GCAGCAACTATAACAACAGCAGCAGCA--GCA------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................................................................................................GTA--GCAGC------AGC---AGCAA---CAT---C...........................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	1	0	0
..................................................................................................................................GCAACAG------CAGCAGAAGCAACAA....................................................................................................................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	0	0	0	1	0
........................................................................................................................................................CAACAACAGCAGCAGCAGCAACA...................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	2	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAG---CAGCAACTGCA------GC....................................................................................	20	11	0.09	1	0	0	0	0	1	0
.....................................................................................................................................................AAGCAACAACAGCAGCAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................	21	12	0.08	1	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAG---CAGCAACTG..............................................................................................	21	18	0.06	1	1	0	0	0	0	0
...................................................................................................CAACAGC--------------------AGCAGCAACAG------CA.................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
...............................................................GC--------------------AACAACAGCA---GCAACAGC--------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................AACAACAGTA--GCAGC------AGC---A.........................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1

droGri2

AAGAGCAACAA-----------------------------------CAACA---------TCAAC--------------------AACAACAGCA---ACAACAAC--------------------AGCAACAACAA------CTGCAACAACAAGAGCAACAGCAAGAGCAACAACAAGA--GCAAC------AGC---AAGAG---CAA---CAAC---------------------------------------------------AAC---AGCG------------------AC------------A---ACAACA---GCAA---------------------------------CAACAACAGCAACAACA---------ACAACAGC--------------------------------------------AAATGCAGC---AAATG---CAGCAGCAACAACTGCATCACCAGCAGCAACTGCAGCAGGACCACCCACGTCAACAGGAGCAACTGCAGCAGCA--GGA------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
............................................................................................................................................................................................................G---CAA---CAAC---------------------------------------------------AAC---AGCG------------------AC------------A---ACA....................................................................................................................................................................................................................................................	21	13	0.08	1	1	0
.....................................................................................................................................................................................................................................................................................CG------------------AC------------A---ACAACA---GCAA---------------------------------CAACA....................................................................................................................................................................................................	20	20	0.05	1	1	0

dsi_5767

2r:17840795-17840947 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads