ID:

dsi_5751

 Coordinate:

3r:4152129-4152278 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_4151887_4152128_+]; CDS [3r_4151887_4152128_+]; intron [3r_4152129_4162440_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATCTTCATCGGATCAGTACATAATGAGATCCAATGACGATATGAATGATTGTAAGCATTAACTTTATATTTTTCTATATATCTCTATCTCTCTCTCTAAAATAAGTTATAAGCAAAGCAAGCAAACTAAATGAAAATACAAGACTCTATCTCCTAACTCGCTATCTCAAAATACCAGTTATCTGTTATCATTTTAACCTATTATTACATATTTCGAAATGCTCCCTTAGTTAACCAACATGACTAACCTA
**************************************************....((..(((((((((((......)))))......................))))))...))..............((((((.((((...((((..............................))))...)))).)))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.............CAGTACATAATGAGATCCAATGAC..................................................................................................................................................................................................................... 24 0 1 6.00 6 5 1 0 0 0 0 0
...........ATCAGTACATAATGAGATCCAATGAC..................................................................................................................................................................................................................... 26 0 1 3.00 3 1 2 0 0 0 0 0
........CGGATCAGTACATAATGAGATC............................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0
...................ATAATGAGATCCAATGAC..................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0
..............AGTACATAATGAGATCCAATGAC..................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0
..........GATCAGTACATAATGAGATCCAATGAC..................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0
..................................................................................................................................TAACAATACAGGACTCTATC.................................................................................................... 20 3 5 0.40 2 0 0 0 0 2 0 0
.....................................................................................................................CAAGCAACCTAAATGA..................................................................................................................... 16 1 3 0.33 1 0 0 0 0 0 1 0
.....................................GTTATGAATGGTTGCAAGC.................................................................................................................................................................................................. 19 3 12 0.08 1 0 1 0 0 0 0 0
................................................................................................................................................................................................................................CTTCGTTAACCACCATCA........ 18 3 20 0.05 1 0 0 0 0 0 0 1
....................TAATCAGATCCTATGA...................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0

Anti-sense strand reads

TAGAAGTAGCCTAGTCATGTATTACTCTAGGTTACTGCTATACTTACTAACATTCGTAATTGAAATATAAAAAGATATATAGAGATAGAGAGAGAGATTTTATTCAATATTCGTTTCGTTCGTTTGATTTACTTTTATGTTCTGAGATAGAGGATTGAGCGATAGAGTTTTATGGTCAATAGACAATAGTAAAATTGGATAATAATGTATAAAGCTTTACGAGGGAATCAATTGGTTGTACTGATTGGAT
**************************************************....((..(((((((((((......)))))......................))))))...))..............((((((.((((...((((..............................))))...)))).)))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR618934
dsim w501 ovaries
.............................................................................................................................................................................................................................AGGGAATCAATTGGTTGTACTGATTGGAT 29 0 1 1.00 1 1 0 0
..............................GTTACAGCTATACTTGCGAAC....................................................................................................................................................................................................... 21 3 4 0.25 1 0 1 0
........................................................................................................................................ATGTTGGGAGATAGAG.................................................................................................. 16 2 20 0.10 2 0 0 2

Generated: 04/23/2015 at 09:06 PM