dsi_5741

exon [2l_6500636_6500764_+]; CDS [2l_6500636_6500764_+]; intron [2l_6500765_6501329_+]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AGCCCGACATGGAGGAGCAGCTGAAGGCACGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGAACTAATATGCGCGCCGGACAGGTTCCATATGACAAGTATCAACAACTATTATCCCTTACAACTTCTACTCTGTTTTGTGTAATGTTCTTATCTTTTGCGTACTTTCTGCCACAAGAAACCACCAACAACTTCAACAACAACTCAGTTTCTATGTACTATACCTACTATTTCTATCT ************************************************((((((.....((((((((...((...(((((..((((.((((((((...........................................)).)))))).)))).)))))....))...)))))))))))))).................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	M025 embryo	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
.........................................................................................GGAAAGGTTCCATGTGA................................................................................................................................................	17	2	17	1.18	20	9	0	0	0	8	2	1
AGCCCGACATGGAGGAGCAGCTGAAGG...............................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................TATAACTATTATCCCTTACCACT.................................................................................................................	23	3	1	1.00	1	0	1	0	0	0	0	0
...............ACCAGCTGAAGGCTCGCATG.......................................................................................................................................................................................................................	20	2	2	0.50	1	0	0	0	1	0	0	0
....CGACATGGAGGAGCAGCT....................................................................................................................................................................................................................................	18	0	2	0.50	1	0	0	1	0	0	0	0
.......................................CATTGTCTAGGGTAGGA..................................................................................................................................................................................................	17	2	2	0.50	1	1	0	0	0	0	0	0

TCGGGCTGTACCTCCTCGTCGACTTCCGTGCGTACCTCCGTAACTGATTCCATCCTTTGTTCCATACGTGAGCTTGATTATACGCGCGGCCTGTCCAAGGTATACTGTTCATAGTTGTTGATAATAGGGAATGTTGAAGATGAGACAAAACACATTACAAGAATAGAAAACGCATGAAAGACGGTGTTCTTTGGTGGTTGTTGAAGTTGTTGTTGAGTCAAAGATACATGATATGGATGATAAAGATAGA ************************************************((((((.....((((((((...((...(((((..((((.((((((((...........................................)).)))))).)))).)))))....))...)))))))))))))).................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs
.............................................................................................................................................................CAAGTATAGAAAACGGGTGAAA.......................................................................	22	3	2	0.50	1	0	1	0
..................................................................................................GGTAGGCTGTTCATAGTT......................................................................................................................................	18	2	4	0.50	2	0	2	0
.....................................................................................................................................................................................................................TGAGTCAAAGATTCAGGA...................	18	2	3	0.33	1	1	0	0
..................................................................................................................................................................................................................TGTTAAGTCAAAGATAC.......................	17	1	4	0.25	1	1	0	0
....................................................................................................................................................................................................GTTGTTGAAGTTGTT.......................................	15	0	9	0.22	2	2	0	0
.................................................................................................................................................................................................................TTGTTGGGTCAAAGAT.........................	16	1	5	0.20	1	1	0	0
...............................................................................................................................................................................................TGGTAGTTGTTGAAGTTGTTTGT....................................	23	3	10	0.10	1	1	0	0
...................................................................................................................................................................................GACAGTGTTCTTAGGTGCT....................................................	19	3	15	0.07	1	0	1	0
...............................................................................................................................................................................................TGTTGGTTGTTGAAG............................................	15	1	16	0.06	1	1	0	0
..........................................................................................................................................................................CGCAAGAAAAACGGTGTTAT............................................................	20	3	17	0.06	1	0	0	1
.........................................................................................................................................................................CTGCATGAAAGACGGTCT...............................................................	18	3	20	0.05	1	1	0	0

Species	Coordinate	ID	Alignment
droSim2	2l:6500715-6500964 +	dsi_5741	AGCCCGACATGGAGGAGCAGCTGAAGGCACGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAAGTA----------------------------------TCA--ACAA-------CTATT---AT-----CCCTTACAACT------TCTACTCTGTT--------------------------------TTGTGTAAT---------------------GTTCTT----------------ATCT--TTTGCGTA------------CTTTCTGCCAC--AA-----GAA----ACC---ACCAACAA---CTTCA---ACA---------------------------------ACAACTCAGTTTCTATGTA-CTAT----------------A-CCT-ACTA---------------------TTTCTATCT
droSec2	scaffold_3:2265940-2266189 +		AGCCCGACATGGAGGAGCAGCTGAAGGCACGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAAGTA----------------------------------TCA--ACAA-------CTATT---AT-----CCCTTACAACT------TCTACTCTGTT--------------------------------TTGTGTAAT---------------------GTTCTT----------------ATCT--TTTGCGTA------------CTTTCTGCCAC--AA-----GAA----ACC---ACCAACAA---CTTCA---ACA---------------------------------AAAACTCAGTTTCTATGTA-CTAT----------------A-CCT-ACTA---------------------TTTCTATCT
dm3	chr2L:6727273-6727525 +		AGCCCGACATGGAAGAGCAGCTAAAGGCACGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAAGTA----------------------------------TCA--ACAA----CAAATATT---AT-----CCCTTACAACT------TCTACTCTGTT--------------------------------TTGTGTAAT---------------------GTTCTT----------------ATCT--TTTGCGTA------------TTTTCTGCCAC--AA-----GAA----ACC---ACCAACAA---CTTCA---ACA---------------------------------ACAACTCAGTTTCTATGTA-CTAT----------------A-CCT-ACTA---------------------TTTCTATCT
droEre2	scaffold_4929:15643702-15643952 +		AGCCTGACATGGAGGAGCAGCTGAAGGCACGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAAGTA----------------------------------TCA--ACAA-------CTATT---AT-----CCCATACAACT------TCTACTCTGTT--------------------------------TTGTGTAAT---------------------GTTCTT----------------ATCT--TTTGCGTA------------CTTTCTGCCAC--AA-----TAA----ACC---ACCAACAA---CTTGA---ACA---------------------------------ACAGATCTCTTTCTATGTA-CTAA----------------ACCCT-TCTA---------------------TTTCTATCT
droYak3	2L:6184436-6184687 -		AGCCTGACATGGAGGAGCAGCTGAAGGCACGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAAGTA----------------------------------TCA--ACAA-------TTATT---AT-----CCCGTACAACTA----CTCTACTCTGTT--------------------------------TTGTGTAAT---------------------GTTCTT----------------ATCT--TTTGCGTA------------CTTTCTGCCAC--AA-----GAA----ACC---ACCAACAA---CTTGA---ACA---------------------------------ACATATCTGTTTCTATGTA-CTAT----------------A-CCT-AATA---------------------CTTCTATCT
droEug1	scf7180000409463:47389-47642 -		AGCCTGACATGGAGGAGCAGCTAAAGGCACGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAAGTA----------------------------------TCA--ACAA-------TTATT---AT-----CCCGTACAACC------ACAACTCTATT--------------------------------TTGTGTAAT---------------------GCTCTT----------------TTCT--TTTGCCAA------------CTTTCCACTAC--AA-----GAA----ACC---ACCAACAA---CTTGA---ACA---------------------------------ACAAGTCTGTCTCTATGTA-CTATATAT------------A-CCT-ACAA---------------------TTTCTCTAT
droBia1	scf7180000302422:2486297-2486520 +		AGCCCGACATGGAGGAGCAGCTGAAGGCACGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAATTA----------------------------------TCA--ACAA-------TTATT---AT-----CCCGTACAACC------TCAACTCTCTT--------------------------------TTGTGTAAT---------------------GCTCTT-----------------TCT--TTTGCCTA------------CTTTCCACAAC--AA-----GAA----ACCACCACTAACAA---CTTGA---ACA---------------------------------ACAAGTCTTT--------------------------------------------------------------------CT
droTak1	scf7180000415399:1446839-1447102 +		AGCCCGACATGGAGGAGCAGCTGAAGGCGCGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAATTA----------------------------------TCA--ACAA-------TTATTACAAT-----CCCTTACAACC------TCAACTCTGTTTT-----------------------------TCTGTGTAAT---------------------GCTCTT-T------TT----TTTTCT--TTTGCGTA------------CTTTCCACAAC--AA-----GAA----ACCACCAACAACAA---CTTGA---ACA---------------------------------ACAAGTCTTTCTCTATGTA-CTAT----------------A-CCT-ACTA---------------------TTTTTCTCT
droEle1	scf7180000490640:398150-398394 +		AGCCCGACATGGAGGAGCAGCTGAAGGCGCGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAAGTA----------------------------------TCA--ACAA-------TTATT---AT-----CCCGTACAACT------TGAACT------------------------------------------------------------------------------------------------TTGTGTA------------CTTTCCACCAC--AC-----GAA----ACCCACACCAACAA---CTTGA---ACA---------------------------------ACAATTCTGTCTCTATGTT-CTATGTGTTCTTCACTTACTATCCT-ACTA---------------------TTTCTCTCT
droRho1	scf7180000779930:2055-2307 -		AGCCTGACATGGAGGAGCAGCTAAAGGCACGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAAGTA----------------------------------TCA--ACAA-------TTATT---AT-----CCCGTACAACT------TGAACTCTATT--------------------------------TTGTGTAAT---------------------GCTCTT----------------TTCT--TTTGCGTA------------CTATCCAACAC--AA-----GAA----ACCTACACCAAAAA---CTTCA---ACA---------------------------------ACAAGTCTGTCTCTATGAT-CTAT----------------A-TCT-ACTG---------------------TTTCTCTTT
droFic1	scf7180000453815:52287-52549 +		AGCCCGACATGGAGGAGCAGCTGAAGGCTCGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAAGTA----------------------------------TCA--ACTATTATCAATTATT---AT-----CCCGTACAACT------TGAACTCTGTT--------------------------------TTGTGTAAT---------------------GCTCTT----------------TTCT--TTTGCGTA------------CTTTCCACAAC--AA-----GAA----ACCACCTCCAACAA---CTTGA---ACA---------------------------------ACAAGTCTGTTTCTATGTA-CTAC----------------T-T---------CCTCTTC----------TTTTTCTCTCT
droKik1	scf7180000302468:436844-437103 -		AGCCGGACATGGAGGAGCAGCTAAAGGCGCGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATATAT-------GA-CAAGTA----------------------------------TCA--ATAA--------TATT---ATCCTCTCCCCTACAACT-----CTCTACTCTGT---------------------------------TTATGTAAT---------------------GCTATT----------------TTCT--TTTGCGTA------------CTTTCCGCTAC--AA-----GAA-CC-ACC---ACCAACAA---CAACAACTACA---------------------------------ACTAATCTA-CTCTATGTA-CTAT----------------A------CTATTC-----------------CTCTCTCTCT
droAna3	scaffold_12916:7351-7581 -	dan_465	AGCCGGACATGGAGGAGCAGCTGAAGGCGCGCATGGAGGCATTGACAAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------GATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAAGTAT---C--TCA--------------------------------A-------TTTT----GT-----C-CTTACAATA-------AAATATTTTT--------------------------------TTAAGCAAA---------------------GCTCTC----------------TTTT--TTTACGTA------------TTTTCCACCAC--AA-----AAA----ACT---ACTAACAA---A--------CT---------------------------------GCAAGTCTCTTT-----------T----------------G-CCC-TCTT---------------------TTTCTTCAA
droBip1	scf7180000392937:59829-60077 -		AGCCGGACATGGAGGAGCAGCTGAAGGCGCGCATGGAGGCATTGACAAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAAGTA----------------------------------TCT---CAA-------TTAT----AT-----C-CTTAAAATT------ATATATTTGTT-------------------------------TTTATGTAAC---------------------GCTCTC-TGTTCTTTG----TTTTTT--TTTACGTA------------CTTTCCACCAC--AA-----AAA-AA-ACT---ACTAACAA---CT-------CT---------------------------------ACAAGTCTCTTT-TTTGT-------------------------CC-TCTA---------------------TTTCTTCAA
dp5	4_group1:3826698-3826947 +	dps_1403	AGCCCGACATGGAAGAGCAGCTGAAGGCGCGCATGGAGGCGTTGACTAAGGTAGGAAATAAGGTATGCACTCGACAAACT----------AATATGCGCGCCATGGCCAGGTTCCCATATATGTACGATGACCAAGTAT---CAGTCAAATTCAATTC---------------------------------------------------AAAT-------TAT---ATATT--------------------------------CTATGTACT-------------TTATATA-GCTCTT----------------TCTT--TTTGTA------------------------CACAAAACAAG---------------------------A---ACA---------------------------------A--ACTCTCTATCTATCTATCTAT--------------CTA-TCTGACTGTCT-----------------CTCTCTGTAT
droPer2	scaffold_5:1443262-1443501 -		AGCCCGACATGGAAGAGCAGCTGAAGGCGCGCATGGAGGCGTTGACTAAGGTAGGAAATAAGGTATGCACTCGACAAACT----------AATATGCGCGCCATGGCCAGGTTCCCATATATGTACGATGACCAAGTAT---CAGTCAAATTCAATTC---------------------------------------------------AAAT-------TAT---ATGTT--------------------------------CTATGTACT-------------TTATATA-GCTCTT----------------TCTT--TTTGTA------------------------CACAAAACAAG---------------------------A---ACA---------------------------------A--ACTCTCTATCTATCTA----T--------------CTA-TCTGACTG-----------------------TCTCTCT
droWil2	scf2_1100000004585:7337426-7337624 +		AGCCGGATATGGAAGAGCAATTGAAGGCGCGCATGGAGGCATTGACTAAGGTAGGAAATAAGGTATGCACTCGA---AATCCAACTAAAAAATATGCGCGCC-TCGCCAGGTTCC-ATAT---------AT-TATATA----------------------------------TTATTACTA-------TTACT---AT-----------------------------------------------------------------TTGTATAAA---------------------TTTATT------------------------TAATTAATTTCCCCCTTTATTTCTACAAC--A---------------------CAACAA---CTACA---ACA---------------------------------A-------------------------------------------------------------------------------
droVir3	scaffold_12963:3353747-3354015 -		AGCCGGACATGGAGGAGCAGCTAAAGGCGCGCATGGAGGCATTGACAAAGGTAGGAAATAAGGTATGCACTCGA---ACT----------AATATGCGCGCC---GACAGGTTCC-ATA---------------AGTATAAAC--TCA-----------------------------------------AATT---AA-----TTTCTACAATTAAATTTTTGATTCTTAT--------------------------------TTGTGTAAC---------------------GTTCTT-TCAAACTCG----TAT-------------------------CTTTTTTCCAA--AA-----T---CCAACT---ACTAACAA---CAACAACAACAACA-----------------A-CAACAACAGAAACAACTCTA------CTCA----------------------------CGATTC------TTTATATAAGTAATCCAATCT
droMoj3	scaffold_6500:13725678-13725978 -		AGCCGGATATGGAGGAGCAGCTAAAGGCGCGCATGGAGGCATTGACAAAGGTAGGAAATAAGGTATGCACTCGA---ACT----------AATATGCGCGCC---GACAGGTTCC-ATAA---------GT------ATAATC--TCA--------------------ATTATCA--ACAA-------TTA----------------TACAACT------A-AATTTTGTATTCTTTTTTTATAGTATATCTATTCTTAATTTTTATGTATCGTAATTTGAGTCTATATATATA-TATTTT------CGAATAGATTTTCTA-----------------------TTTC--C--AA-----AAATCCACTA---ACTAACAACAACAAGA---ACAATA-----------------TCCAAGAATATATACAACTCTTTCTCTAT------------------------------------------------------------TATT
droGri2	scaffold_15252:2925529-2925801 -		AGCCGGACATGGAGGAGCAGCTAAAGGCGCGCATGGAGGCATTGACTAAGGTAGGAAATAAGGTATGCACTCGA---ACT----------AATATGCGCGCC---GACAGGTTCC-ATAA---------------GTATA-----TCAAATTCAATTCTACAATCTCAATCTTC--------------------------------------TTT----CTTTATTCT-TT--------------------------------CTGTGTAAT-------------ATGTATATG-TATTTTC-----CGAGTATATTTT--T-----------------------TTTC--C--AA-----ATATCCACCT---ACTAACAA---CAACAACAACAACCAAAGAAAAACCCCAAGATAC---AAGATATACAACTCTCTA--------------------------------------------------------------TCTATCT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AGCCCGACATGGAGGAGCAGCTGAAGGCACGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAAGTA----------------------------------TCA--ACAA-------CTATT---AT-----CCCTTACAACT------TCTACTCTGTT--------------------------------TTGTGTAAT---------------------GTTCTT----------------ATCT--TTTGCGTA------------CTTTCTGCCAC--AA-----GAA----ACC---ACCAACAA---CTTCA---ACA---------------------------------ACAACTCAGTTTCTATGTA-CTAT----------------A-CCT-ACTA---------------------TTTCTATCT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
AGCCCGACATGGAGGAGCAGCTGAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....CGACATGGAGGAGCAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AGCCCGACATGGAGGAGCAGCTGAAGGCACGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAAGTA----------------------------------TCA--ACAA-------CTATT---AT-----CCCTTACAACT------TCTACTCTGTT--------------------------------TTGTGTAAT---------------------GTTCTT----------------ATCT--TTTGCGTA------------CTTTCTGCCAC--AA-----GAA----ACC---ACCAACAA---CTTCA---ACA---------------------------------AAAACTCAGTTTCTATGTA-CTAT----------------A-CCT-ACTA---------------------TTTCTATCT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................................................GAAACAAGGTATGCACTCGA---................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0
.....................TGAAGGCACGCATGGAGGCATTGACTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1

dm3

AGCCCGACATGGAAGAGCAGCTAAAGGCACGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAAGTA----------------------------------TCA--ACAA----CAAATATT---AT-----CCCTTACAACT------TCTACTCTGTT--------------------------------TTGTGTAAT---------------------GTTCTT----------------ATCT--TTTGCGTA------------TTTTCTGCCAC--AA-----GAA----ACC---ACCAACAA---CTTCA---ACA---------------------------------ACAACTCAGTTTCTATGTA-CTAT----------------A-CCT-ACTA---------------------TTTCTATCT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................CTAAAGGCACGCATGGAGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................ATGGAGGCATTGACTAAGGTAGGAAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CGCATGGAGGCATTGACTAAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AGCCCGACATGGAAGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................AGGTATGCACTCGA---ACT----------AATA...............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CACGCATGGAGGCATTGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTA-CTAT----------------A-CCT-ACTA---------------------TTTCTA...	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................ACGCATGGAGGCATTGACTAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................GCAGCTAAAGGCACGCATGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TGGAGGCATTGACTAAGGTAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CTAAAGGCACGCATGGAGGCATTGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GCACGCATGGAGGCATTGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AGCCCGACATGGAAGAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................TAAAGGCACGCATGGAGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AGCCCGACATGGAAGAGCAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AGCCTGACATGGAGGAGCAGCTGAAGGCACGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAAGTA----------------------------------TCA--ACAA-------CTATT---AT-----CCCATACAACT------TCTACTCTGTT--------------------------------TTGTGTAAT---------------------GTTCTT----------------ATCT--TTTGCGTA------------CTTTCTGCCAC--AA-----TAA----ACC---ACCAACAA---CTTGA---ACA---------------------------------ACAGATCTCTTTCTATGTA-CTAA----------------ACCCT-TCTA---------------------TTTCTATCT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
AGCCTGACATGGAGGAGCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
AGCCTGACATGGAGGAGCAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0

droYak3

AGCCTGACATGGAGGAGCAGCTGAAGGCACGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAAGTA----------------------------------TCA--ACAA-------TTATT---AT-----CCCGTACAACTA----CTCTACTCTGTT--------------------------------TTGTGTAAT---------------------GTTCTT----------------ATCT--TTTGCGTA------------CTTTCTGCCAC--AA-----GAA----ACC---ACCAACAA---CTTGA---ACA---------------------------------ACATATCTGTTTCTATGTA-CTAT----------------A-CCT-AATA---------------------CTTCTATCT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................GCATGGAGGCATTGACTAAGGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
...........GAGGAGCAGCTGAAGGCAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
AGCCTGACATGGAGGAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................AGCTGAAGGCACGCATGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
AGCCTGACATGGAGGAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

AGCCTGACATGGAGGAGCAGCTAAAGGCACGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAAGTA----------------------------------TCA--ACAA-------TTATT---AT-----CCCGTACAACC------ACAACTCTATT--------------------------------TTGTGTAAT---------------------GCTCTT----------------TTCT--TTTGCCAA------------CTTTCCACTAC--AA-----GAA----ACC---ACCAACAA---CTTGA---ACA---------------------------------ACAAGTCTGTCTCTATGTA-CTATATAT------------A-CCT-ACAA---------------------TTTCTCTAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGCCCGACATGGAGGAGCAGCTGAAGGCACGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAATTA----------------------------------TCA--ACAA-------TTATT---AT-----CCCGTACAACC------TCAACTCTCTT--------------------------------TTGTGTAAT---------------------GCTCTT-----------------TCT--TTTGCCTA------------CTTTCCACAAC--AA-----GAA----ACCACCACTAACAA---CTTGA---ACA---------------------------------ACAAGTCTTT--------------------------------------------------------------------CT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGCCCGACATGGAGGAGCAGCTGAAGGCGCGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAATTA----------------------------------TCA--ACAA-------TTATTACAAT-----CCCTTACAACC------TCAACTCTGTTTT-----------------------------TCTGTGTAAT---------------------GCTCTT-T------TT----TTTTCT--TTTGCGTA------------CTTTCCACAAC--AA-----GAA----ACCACCAACAACAA---CTTGA---ACA---------------------------------ACAAGTCTTTCTCTATGTA-CTAT----------------A-CCT-ACTA---------------------TTTTTCTCT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGCCCGACATGGAGGAGCAGCTGAAGGCGCGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAAGTA----------------------------------TCA--ACAA-------TTATT---AT-----CCCGTACAACT------TGAACT------------------------------------------------------------------------------------------------TTGTGTA------------CTTTCCACCAC--AC-----GAA----ACCCACACCAACAA---CTTGA---ACA---------------------------------ACAATTCTGTCTCTATGTT-CTATGTGTTCTTCACTTACTATCCT-ACTA---------------------TTTCTCTCT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGCCTGACATGGAGGAGCAGCTAAAGGCACGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAAGTA----------------------------------TCA--ACAA-------TTATT---AT-----CCCGTACAACT------TGAACTCTATT--------------------------------TTGTGTAAT---------------------GCTCTT----------------TTCT--TTTGCGTA------------CTATCCAACAC--AA-----GAA----ACCTACACCAAAAA---CTTCA---ACA---------------------------------ACAAGTCTGTCTCTATGAT-CTAT----------------A-TCT-ACTG---------------------TTTCTCTTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGCCCGACATGGAGGAGCAGCTGAAGGCTCGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAAGTA----------------------------------TCA--ACTATTATCAATTATT---AT-----CCCGTACAACT------TGAACTCTGTT--------------------------------TTGTGTAAT---------------------GCTCTT----------------TTCT--TTTGCGTA------------CTTTCCACAAC--AA-----GAA----ACCACCTCCAACAA---CTTGA---ACA---------------------------------ACAAGTCTGTTTCTATGTA-CTAC----------------T-T---------CCTCTTC----------TTTTTCTCTCT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGCCGGACATGGAGGAGCAGCTAAAGGCGCGCATGGAGGCATTGACTAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATATAT-------GA-CAAGTA----------------------------------TCA--ATAA--------TATT---ATCCTCTCCCCTACAACT-----CTCTACTCTGT---------------------------------TTATGTAAT---------------------GCTATT----------------TTCT--TTTGCGTA------------CTTTCCGCTAC--AA-----GAA-CC-ACC---ACCAACAA---CAACAACTACA---------------------------------ACTAATCTA-CTCTATGTA-CTAT----------------A------CTATTC-----------------CTCTCTCTCT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AGCCGGACATGGAGGAGCAGCTGAAGGCGCGCATGGAGGCATTGACAAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------GATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAAGTAT---C--TCA--------------------------------A-------TTTT----GT-----C-CTTACAATA-------AAATATTTTT--------------------------------TTAAGCAAA---------------------GCTCTC----------------TTTT--TTTACGTA------------TTTTCCACCAC--AA-----AAA----ACT---ACTAACAA---A--------CT---------------------------------GCAAGTCTCTTT-----------T----------------G-CCC-TCTT---------------------TTTCTTCAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................................................................................................................................................................................................................................................TAACAA---A--------CT---------------------------------GCAAGTCTCTTT-----------T----------------G-CCC-..................................	26	1	29.00	29	12	17	0	0	0	0
......................................................................TCGA---ACT----------GATATGCGCGCC--GGACAGG..............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	23.00	23	22	1	0	0	0	0
.......................................................AAACAAGGTATGCACTCGA---ACT----------GATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	20.00	20	18	2	0	0	0	0
........................................................AACAAGGTATGCACTCGA---ACT----------GATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	19.00	19	18	1	0	0	0	0
...............................................AAGGTAGGAAACAAGGTATGCACTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	19.00	19	12	7	0	0	0	0
.......................................................AAACAAGGTATGCACTCGA---ACT----------GATA...............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	16.00	16	4	12	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................T---ACTAACAA---A--------CT---------------------------------GCAAGTCTCTTT-----------T----------------G-CCC-..................................	29	1	15.00	15	7	8	0	0	0	0
........................................................AACAAGGTATGCACTCGA---ACT----------GATA...............................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	13.00	13	10	2	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................T--TTTACGTA------------TTTTCCACCAC--AA-----AAA----AC...........................................................................................................................................	27	1	11.00	11	11	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TAACAA---A--------CT---------------------------------GCAAGTCTCTTT-----------T----------------G-CCC-TC................................	28	1	11.00	11	8	3	0	0	0	0
...........................................GACAAAGGTAGGAAACAAGGTATGCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	11.00	11	2	9	0	0	0	0
.............................................CAAAGGTAGGAAACAAGGTATGCACTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	10.00	10	5	4	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................A----ACT---ACTAACAA---A--------CT---------------------------------GCAAGTCTCTTT-----------.........................................................	27	1	10.00	10	7	3	0	0	0	0
......................................................................TCGA---ACT----------GATATGCGCGCC--GGACAG...............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	9.00	9	9	0	0	0	0	0
.......................................................AAACAAGGTATGCACTCGA---ACT----------GA.................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	8.00	8	3	5	0	0	0	0
...............................................AAGGTAGGAAACAAGGTATGCACTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	7.00	7	1	6	0	0	0	0
.....GACATGGAGGAGCAGCTGAAGGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	7.00	7	3	4	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TAACAA---A--------CT---------------------------------GCAAGTCTCTTT-----------T----------------G-CCC-TCT...............................	29	1	7.00	7	7	0	0	0	0	0
.......................................................................CGA---ACT----------GATATGCGCGCC--GGACAGG..............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	7.00	7	7	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TTACGTA------------TTTTCCACCAC--AA-----AAA----ACT---AC.....................................................................................................................................	28	1	7.00	7	6	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TAACAA---A--------CT---------------------------------GCAAGTCTCTTT-----------T----------------G-CC....................................	25	1	6.00	6	1	5	0	0	0	0
........................................................................GA---ACT----------GATATGCGCGCC--GGACAGG..............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	6.00	6	6	0	0	0	0	0
..............................................AAAGGTAGGAAACAAGGTATGCACTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	6.00	6	0	6	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TTACGTA------------TTTTCCACCAC--AA-----AAA----AC...........................................................................................................................................	25	1	6.00	6	5	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TAACAA---A--------CT---------------------------------GCAAGTCTCTTT-----------T----------------G-CCC-T.................................	27	1	6.00	6	2	4	0	0	0	0
......................................................GAAACAAGGTATGCACTCGA---ACT----------GA.................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	6.00	6	3	3	0	0	0	0
......................................................................TCGA---ACT----------GATATGCGCGCC--GGACAGGT.............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	6.00	6	6	0	0	0	0	0
......................................................................TCGA---ACT----------GATATGCGCGCC--GGACA................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	6.00	6	6	0	0	0	0	0
.....GACATGGAGGAGCAGCTGAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	6.00	6	3	2	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................T---ACTAACAA---A--------CT---------------------------------GCAAGTCTCTTT-----------T----------------G-CC....................................	28	1	5.00	5	3	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................TTTACGTA------------TTTTCCACCAC--AA-----AAA----AC...........................................................................................................................................	26	1	5.00	5	4	1	0	0	0	0
.............................................CAAAGGTAGGAAACAAGGTATGCACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	5.00	5	1	4	0	0	0	0
......................................................................TCGA---ACT----------GATATGCGCGCC--GGAC.................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	3	2	0	0	0	0
...............................................AAGGTAGGAAACAAGGTATGCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	3	2	0	0	0	0
.........................................................ACAAGGTATGCACTCGA---ACT----------GATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	4	0	0	0	0	0
.................................................................TGCACTCGA---ACT----------GATATGCGCGCC--GG...................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	3	1	0	0	0	0
..........................................TGACAAAGGTAGGAAACAAGGTATGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	2	2	0	0	0	0
..........................................TGACAAAGGTAGGAAACAAGGTATGCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	4.00	4	2	2	0	0	0	0
......................................................GAAACAAGGTATGCACTCGA---ACT----------GATA...............................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	4.00	4	3	1	0	0	0	0
........................................................AACAAGGTATGCACTCGA---ACT----------GATATGC............................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	4.00	4	4	0	0	0	0	0
...............................................AAGGTAGGAAACAAGGTATGCACTCGA---................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	4.00	4	4	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TAACAA---A--------CT---------------------------------GCAAGTCTCTTT-----------T----------------G-C.....................................	24	1	4.00	4	2	2	0	0	0	0
.................................................GGTAGGAAACAAGGTATGCACTCGA---AC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	1	0	0	0	2
...............................................................................T----------GATATGCGCGCC--GGACAGGTTCC-.........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	1	2	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................AACAA---A--------CT---------------------------------GCAAGTCTCTTT-----------T----------------G-CCC-TC................................	27	1	3.00	3	3	0	0	0	0	0
...........................................GACAAAGGTAGGAAACAAGGTATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	1	2	0	0	0	0
...........................................GACAAAGGTAGGAAACAAGGTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	1	2	0	0	0	0
...........................................GACAAAGGTAGGAAACAAGGTATGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	3	0	0	0	0
.....GACATGGAGGAGCAGCTGAAGGCGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	2	1	0	0	0	0
................................................................................................................................................................................................................................TATTTTT--------------------------------TTAAGCAAA---------------------GCTCTC----------------TTT...............................................................................................................................................................................................	25	1	3.00	3	1	2	0	0	0	0
...................................................................CACTCGA---ACT----------GATATGCGCGCC--GGA..................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	3	0	0	0	0	0
.GCCGGACATGGAGGAGCAGCTGAAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	1	0	0	0	1	0
AGCCGGACATGGAGGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	1	1	0	0	0	0
........................................................................GA---ACT----------GATATGCGCGCC--GGACAGGT.............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	1	0	1	0	0	0
.......................................................................CGA---ACT----------GATATGCGCGCC--GGACAGGTT............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
...............................................AAGGTAGGAAACAAGGTATGCACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................CAA---A--------CT---------------------------------GCAAGTCTCTTT-----------T----------------G-CCC-TCTT---------------------.........	27	1	2.00	2	1	1	0	0	0	0
...............................................................................T----------GATATGCGCGCC--GGACAGGTTCC-ATA......................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
.....GACATGGAGGAGCAGCTGAAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	0	0	1	0
......ACATGGAGGAGCAGCTGAAGGCGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
.......CATGGAGGAGCAGCTGAAGGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0
.......CATGGAGGAGCAGCTGAAGGCGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
...................................................TAGGAAACAAGGTATGCACTCGA---ACT----------GA.................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................A----ACT---ACTAACAA---A--------CT---------------------------------GCAAGTCTCTT.....................................................................	26	1	2.00	2	1	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................CAA---A--------CT---------------------------------GCAAGTCTCTTT-----------T----------------G-CCC-TCT...............................	26	1	2.00	2	2	0	0	0	0	0
..............................................................................................TGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAA......................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	1	1	0	0	0	0
.....GACATGGAGGAGCAGCTGAAGGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TACGTA------------TTTTCCACCAC--AA-----AAA----ACT---AC.....................................................................................................................................	27	1	2.00	2	1	1	0	0	0	0
...............................................................................T----------GATATGCGCGCC--GGACAGGTTCC-A........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................ACTAACAA---A--------CT---------------------------------GCAAGTCTCTTT-----------T----------------G-CCC-..................................	28	1	2.00	2	1	1	0	0	0	0
..............................................AAAGGTAGGAAACAAGGTATGCACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0
........................................................AACAAGGTATGCACTCGA---ACT----------GATAT..............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
..................................................GTAGGAAACAAGGTATGCACTCGA---................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0
............................................ACAAAGGTAGGAAACAAGGTATGCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................ACT---ACTAACAA---A--------CT---------------------------------GCAAGTCTCTTT-----------.........................................................	26	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................AAGTAT---C--TCA--------------------------------A-------TTTT----GT-----C-CTTACAAT........................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0
......................................................................TCGA---ACT----------GATATGCGCGCC--GG...................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
.....................................................................CTCGA---ACT----------GATATGCGCGCC--GGA..................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0
.......................................................AAACAAGGTATGCACTCGA---AC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0
.........................................................ACAAGGTATGCACTCGA---ACT----------GATA...............................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
.................................................................TGCACTCGA---ACT----------GATATGCGCGCC--.....................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0
...............................................................................T----------GATATGCGCGCC--GGACAGGTTCC-AT.......................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	1	1	0	0	0	0
.......................................................AAACAAGGTATGCACTCGA---ACT----------GAT................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0
......................................................................TCGA---ACT----------GATATGCGCGCC--GGA..................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
.............................................CAAAGGTAGGAAACAAGGTATGCACTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	1	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CT---ACTAACAA---A--------CT---------------------------------GCAAGTCTCTTT-----------.........................................................	25	1	2.00	2	2	0	0	0	0	0
.......CATGGAGGAGCAGCTGAAGGCGCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	1	1	0	0	0	0
.......................................CATTGACAAAGGTAGGAAACAAGGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	1	1	0	0	0	0
............................................ACAAAGGTAGGAAACAAGGTATGCACTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	1	0	0	1	0
...........................................GACAAAGGTAGGAAACAAGGTAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	1	1	0	0	0	0
.............................................CAAAGGTAGGAAACAAGGTATGCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0
............................................ACAAAGGTAGGAAACAAGGTATGCACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................AACAA---A--------CT---------------------------------GCAAGTCTCTTT-----------T----------------G-CCC-..................................	25	1	2.00	2	2	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................T--TTTACGTA------------TTTTCCACCAC--AA-----AAA----.............................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
.....................................................................CTCGA---ACT----------GATATGCGCGCC--GGACAGG..............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
................................................................................................................TCC-ATAT---------GA-CAAGTAT---C--TCA--------------------------------A-------TTTT----G........................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	1	0	1	0	0	0
........................................................................................................................................TAT---C--TCA--------------------------------A-------TTTT----GT-----C-CTTACAATA-------AAAT............................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
.........TGGAGGAGCAGCTGAAGGCGCGCATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TACGTA------------TTTTCCACCAC--AA-----AAA----ACT---ACT....................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
................................................................................................CGCGCC--GGACAGGTTCC-ATAT---------GA-CAAG.....................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0
...CGGACATGGAGGAGCAGCTGAAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...........................................................AAGGTATGCACTCGA---ACT----------GATATGCGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.....................................................................CTCGA---ACT----------GATATGCGCGCC--GGAC.................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................GTAT---C--TCA--------------------------------A-------TTTT----GT-----C-CTTACAATA-------AAAT............................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
.GCCGGACATGGAGGAGCAGCTGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
......ACATGGAGGAGCAGCTGAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
................GCAGCTGAAGGCGCGCATGGAGGCATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TAACAA---A--------CT---------------------------------GCAAGTCTCTTT-----------T----------------G-CCC-C.................................	27	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TAACAA---A--------CT---------------------------------GCAAGTCTCTTT-----------T----------------G-CCC-TT................................	28	1	1.00	1	1	0	0	0	0	0
....................CTGAAGGCGCGCATGGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TA------------TTTTCCACCAC--AA-----AAA----ACT---ACC....................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.......................................................................CGA---ACT----------GATATGCGCGCC--GGACA................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
....................................................AGGAAACAAGGTATGCACTCGA---ACT----------G..................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.GCCGGACATGGAGGAGCAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................AAGTAT---C--TCA--------------------------------A-------TTTT----GT-----C-CTTACA..........................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..............................................................................................TGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAAG.....................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................TTTT--TTTACGTA------------TTTTCCACCAC--AA-----A...................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..................................................................................................CGCC--GGACAGGTTCC-ATAT---------GA-CAA......................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.............................................CAAAGGTAGGAAACAAGGTATGCACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...............................................................................T----------GATATGCGCGCC--GGACAGGTTC...........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...............AGCAGCTGAAGGCGCGCATGGAGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TTACGTA------------TTTTCCACCAC--AA-----AAA----ACT---ACT....................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.....GACATGGAGGAGCAGCTGAAGGCGCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................CAA---A--------CT---------------------------------GCAAGTCTCTTT-----------T----------------G-CCC-T.................................	24	1	1.00	1	0	1	0	0	0	0
...............................................................................T----------GATATGCGCGCC--GGACAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TTACGTA------------TTTTCCACCAC--AA-----AAA----ACT---.......................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..............GAGCAGCTGAAGGCGCGCATGGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.......................................................AAACAAGGTATGCACTCGA---ACT----------GATATGC............................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
...............................................................TATGCACTCGA---ACT----------GATATGCGCGCC--GGA..................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.............................................CAAAGGTAGGAAACAAGGTATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.............................................................................................................GGTTCC-ATAT---------GA-CAAGTAT---C--TCA--------------------------------A-------TTT..............................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........................................................................GA---ACT----------GATATGCGCGCC--GGAC.................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....................TGAAGGCGCGCATGGAGGCATTGACAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
......................................................GAAACAAGGTATGCACTCGA---AC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.....................TGAAGGCGCGCATGGAGGCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................TTTACGTA------------TTTTCCACCAC--AA-----AAA----.............................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................T---ACTAACAA---A--------CT---------------------------------GCAAGTCTCTTT-----------T----------------G-CCT-..................................	29	1	1.00	1	1	0	0	0	0	0
.....GACATGGAGGAGCAGCTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.................................................GGTAGGAAACAAGGTATGCACTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.....GACATGGAGGAGCAGCTGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
................................................AGGTAGGAAACAAGGTATGCACTCGA---................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
............................................ACAAAGGTAGGAAACAAGGTATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................TATTTTT--------------------------------TTAAGCAAA---------------------GCTCTC----------------TTTT--TT..........................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
...................................................TAGGAAACAAGGTATGCACTCGA---ACT----------...................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...................................................TAGGAAACAAGGTATGCACTCGA---AC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.GCCGGACATGGAGGAGCAGCTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.......CATGGAGGAGCAGCTGAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..............................GCATGGAGGCATTGACAAAGGTAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
......................GAAGGCGCGCATGGAGGCATTGACAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
....................................................................................................CC--GGACAGGTTCC-ATAT---------GA-CAA......................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...........................................GACAAAGGTAGGAAACAAGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
......................................................................TCGA---ACT----------GATATGCGCGCC--GGACAGT..............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
........................................................................GA---ACT----------GATATGCGCGCC--GGA..................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.......................................................................CGA---ACT----------GATATGCGCGCC--GGACAG...............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CAC--AA-----AAA----ACT---ACTAACAA---A--------CT---------------------------------GCAAGT..........................................................................	28	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................A-----AAA----ACT---ACTAACAA---A--------CT---------------------------------GCAAGTCT........................................................................	26	1	1.00	1	0	1	0	0	0	0
........................................................AACAAGGTATGCACTCGA---ACT----------...................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................................................................GA---ACT----------GATATGCGCGCC--GGACA................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.........................................TTGACAAAGGTAGGAAACAAGGTAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
........................................................AACAAGGTATGCACTCGA---ACT----------GATATGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
..........................................TGACAAAGGTAGGAAACAAGGTATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................CACCAC--AA-----AAA----ACT---ACTAACAA---A--------CT---------------------------------GC..............................................................................	27	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TTACGTA------------TTTTCCACCAC--AA-----AAA----ACT---A......................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...........................................................AAGGTATGCACTCGA---ACT----------GATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................A----ACT---ACTAACAA---A--------CT---------------------------------GCAAGTCTCT......................................................................	25	1	1.00	1	1	0	0	0	0	0
.....................TGAAGGCGCGCATGGAGGCATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
........................................................................GA---ACT----------GATATGCGCGCC--GGACAGGTT............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.......................................................AAACAAGGTATGCACTCGA---ACT----------GATAT..............................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.......CATGGAGGAGCAGCTGAAGGCGCGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................TCCACCAC--AA-----AAA----ACT---ACTAACAA---A--------CT---------------------------------GC..............................................................................	29	1	1.00	1	0	1	0	0	0	0
....................................................................ACTCGA---ACT----------GATATGCGCGCC--GGA..................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.........................................................ACAAGGTATGCACTCGA---ACT----------GATAT..............................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...........................................................AAGGTATGCACTCGA---ACT----------GATATGCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0
..............................................................................CT----------GATATGCGCGCC--GGACAGGTTC...........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TT--TTTACGTA------------TTTTCCACCA..............................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................A----ACT---ACTAACAA---A--------CT---------------------------------GCAAGTCTCTTT-----------T----------------........................................	28	1	1.00	1	1	0	0	0	0	0
..........................................TGACAAAGGTAGGAAACAAGGTATGCACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
.....................................................................CTCGA---ACT----------GATATGCGCGCC--GG...................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...............AGCAGCTGAAGGCGCGCATGGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...............................................AAGGTAGGAAACAAGGTATGCACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................ACT---ACTAACAA---A--------CT---------------------------------GCAAGTCTCT......................................................................	24	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------GCAAGTCTCTTT-----------T----------------G-CCC-TCTT---------------------TTTCT....	27	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................TATTTTT--------------------------------TTAAGCAAA---------------------GCTCTC----------------TTTT--............................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..........................................TGACAAAGGTAGGAAACAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.......................................................................CGA---ACT----------GATATGCGCGCC--GGACAGGT.............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.......................................................................CGA---ACT----------GATATGCGCGCC--GGA..................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------GCAAGTCTCTTT-----------T----------------G-CCC-TCTT---------------------TTT......	25	1	1.00	1	1	0	0	0	0	0
........................................................................GA---ACT----------GATATGCGCGCC--GGACAGGTTC...........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........ATGGAGGAGCAGCTGAAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..................................................................GCACTCGA---ACT----------GATATGCGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.........................................................................A---ACT----------GATATGCGCGCC--GGACAGGTT............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
....GGACATGGAGGAGCAGCTGAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..........................................................CAAGGTATGCACTCGA---ACT----------GATATGC............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
......................................................GAAACAAGGTATGCACTCGA---ACT----------GAT................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.................................................GGTAGGAAACAAGGTATGCACTCGA---................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................CTAACAA---A--------CT---------------------------------GCAAGTCTCTTT-----------T----------------G-CCC-..................................	27	1	1.00	1	1	0	0	0	0	0
...............................................................................T----------GATATGCGCGCC--GGACAGGT.............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...................................................TAGGAAACAAGGTATGCACTCGA---A...............................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TTACGTA------------TTTTCCACCAC--AA-----AAA----ACT---ACC....................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
.....................TGAAGGCGCGCATGGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..............................................AAAGGTAGGAAACAAGGTATGCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...............................CATGGAGGCATTGACAAAGGTAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.....GACATGGAGGAGCAGCTGAAGGCGCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.GCCGGACATGGAGGAGCAGCTGAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...............AGCAGCTGAAGGCGCGCATGGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
........................................................................GA---ACT----------GATATGCGCGCC--GGACAGGTTCC-A........................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................T---ACTAACAA---A--------CT---------------------------------GCAAGTCTCTTT-----------T----------------G-C.....................................	27	1	1.00	1	0	1	0	0	0	0
...........................CGCGCATGGAGGCATTGACAAAGGTAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.............................CGCATGGAGGCATTGACAAAGGTAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
......................GAAGGCGCGCATGGAGGCATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.....GACATGGAGGAGCAGCTGAAGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TTT--TTTACGTA------------TTTTCCACCAC--AA-----AAA----AC...........................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
..................................................GTAGGAAACAAGGTATGCACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...CGGACATGGAGGAGCAGCTGAAGGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0

droBip1

AGCCGGACATGGAGGAGCAGCTGAAGGCGCGCATGGAGGCATTGACAAAGGTAGGAAACAAGGTATGCACTCGA---ACT----------AATATGCGCGCC--GGACAGGTTCC-ATAT---------GA-CAAGTA----------------------------------TCT---CAA-------TTAT----AT-----C-CTTAAAATT------ATATATTTGTT-------------------------------TTTATGTAAC---------------------GCTCTC-TGTTCTTTG----TTTTTT--TTTACGTA------------CTTTCCACCAC--AA-----AAA-AA-ACT---ACTAACAA---CT-------CT---------------------------------ACAAGTCTCTTT-TTTGT-------------------------CC-TCTA---------------------TTTCTTCAA	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGCCCGACATGGAAGAGCAGCTGAAGGCGCGCATGGAGGCGTTGACTAAGGTAGGAAATAAGGTATGCACTCGACAAACT----------AATATGCGCGCCATGGCCAGGTTCCCATATATGTACGATGACCAAGTAT---CAGTCAAATTCAATTC---------------------------------------------------AAAT-------TAT---ATATT--------------------------------CTATGTACT-------------TTATATA-GCTCTT----------------TCTT--TTTGTA------------------------CACAAAACAAG---------------------------A---ACA---------------------------------A--ACTCTCTATCTATCTATCTAT--------------CTA-TCTGACTGTCT-----------------CTCTCTGTAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.GCCCGACATGGAAGAGCAGCTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.GCCCGACATGGAAGAGCAGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.GCCCGACATGGAAGAGCAGCTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................GGCGTTGACTAAGGTAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.GCCCGACATGGAAGAGCAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............AGCAGCTGAAGGCGCGCATGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
AGCCCGACATGGAAGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
....CGACATGGAAGAGCAGCTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................GGCGCGCATGGAGGCGTTGACTAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....CGACATGGAAGAGCAGCTGAAGGCGCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1
........................AGGCGCGCATGGAGGCGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGCCCGACATGGAAGAGCAGCTGAAGGCGCGCATGGAGGCGTTGACTAAGGTAGGAAATAAGGTATGCACTCGACAAACT----------AATATGCGCGCCATGGCCAGGTTCCCATATATGTACGATGACCAAGTAT---CAGTCAAATTCAATTC---------------------------------------------------AAAT-------TAT---ATGTT--------------------------------CTATGTACT-------------TTATATA-GCTCTT----------------TCTT--TTTGTA------------------------CACAAAACAAG---------------------------A---ACA---------------------------------A--ACTCTCTATCTATCTA----T--------------CTA-TCTGACTG-----------------------TCTCTCT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......ACATGGAAGAGCAGCTGAAGGCGCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATCTA----T--------------CTA-TCTGACC...............................	20	6	0.17	1	1	0	0	0	0	0

droWil2

AGCCGGATATGGAAGAGCAATTGAAGGCGCGCATGGAGGCATTGACTAAGGTAGGAAATAAGGTATGCACTCGA---AATCCAACTAAAAAATATGCGCGCC-TCGCCAGGTTCC-ATAT---------AT-TATATA----------------------------------TTATTACTA-------TTACT---AT-----------------------------------------------------------------TTGTATAAA---------------------TTTATT------------------------TAATTAATTTCCCCCTTTATTTCTACAAC--A---------------------CAACAA---CTACA---ACA---------------------------------A-------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................CATTGACTAAGGTAGGAAATAAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...................ATTGAAGGCGCGCATGGAGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0

droVir3

AGCCGGACATGGAGGAGCAGCTAAAGGCGCGCATGGAGGCATTGACAAAGGTAGGAAATAAGGTATGCACTCGA---ACT----------AATATGCGCGCC---GACAGGTTCC-ATA---------------AGTATAAAC--TCA-----------------------------------------AATT---AA-----TTTCTACAATTAAATTTTTGATTCTTAT--------------------------------TTGTGTAAC---------------------GTTCTT-TCAAACTCG----TAT-------------------------CTTTTTTCCAA--AA-----T---CCAACT---ACTAACAA---CAACAACAACAACA-----------------A-CAACAACAGAAACAACTCTA------CTCA----------------------------CGATTC------TTTATATAAGTAATCCAATCT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
AGCCGGACATGGAGGAGCAGCTAAAGGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
...................................................................CACTCGA---ACT----------AATATGCGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AGCCGGACATGGAGGAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGCCGGATATGGAGGAGCAGCTAAAGGCGCGCATGGAGGCATTGACAAAGGTAGGAAATAAGGTATGCACTCGA---ACT----------AATATGCGCGCC---GACAGGTTCC-ATAA---------GT------ATAATC--TCA--------------------ATTATCA--ACAA-------TTA----------------TACAACT------A-AATTTTGTATTCTTTTTTTATAGTATATCTATTCTTAATTTTTATGTATCGTAATTTGAGTCTATATATATA-TATTTT------CGAATAGATTTTCTA-----------------------TTTC--C--AA-----AAATCCACTA---ACTAACAACAACAAGA---ACAATA-----------------TCCAAGAATATATACAACTCTTTCTCTAT------------------------------------------------------------TATT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

AGCCGGACATGGAGGAGCAGCTAAAGGCGCGCATGGAGGCATTGACTAAGGTAGGAAATAAGGTATGCACTCGA---ACT----------AATATGCGCGCC---GACAGGTTCC-ATAA---------------GTATA-----TCAAATTCAATTCTACAATCTCAATCTTC--------------------------------------TTT----CTTTATTCT-TT--------------------------------CTGTGTAAT-------------ATGTATATG-TATTTTC-----CGAGTATATTTT--T-----------------------TTTC--C--AA-----ATATCCACCT---ACTAACAA---CAACAACAACAACCAAAGAAAAACCCCAAGATAC---AAGATATACAACTCTCTA--------------------------------------------------------------TCTATCT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_5741

2l:6500765-6500914 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads