ID:

dsi_5731

 Coordinate:

3r:19464988-19465137 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.9 -2.8 -2.6 -2.5

Flybase annnotation

CDS [3r_19464969_19464987_-]; three_prime_UTR [3r_19464548_19464968_-]; exon [3r_19464548_19464987_-]; intron [3r_19464988_19466516_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCTAATTTATTTTTCCTTTCTTTCCTCCCACCGATCCACATCTGAAAAAACTAACAATCGGAATGCAAATTCAAAACTATACTACCCATACATAACATCTGGCATGCGGCTGTAAAATCCAATTTAACAAATAAATCAAACCAATCAAACCAACTCAACTTTTTCTGCACTCACAATGAAAAACGAACAAAACCATATAGAATCCAAGCATCCAAGTAGCATGCTCATCAAGGCCTATAATCTGCATTAT
*************************************************************************************************..((......................................................................................))************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 M024
male body
.......................................................................................................................................................................................................................GTAGCATGCTCATCAAGGCCT.............. 21 0 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TCTGGCATGCGGCTGTAAAATCCAA................................................................................................................................ 25 0 1 2.00 2 0 1 0 1 0 0 0 0
..................................................................................................................................................................TTCTGCACTCACAATGAAAAACGAACA............................................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0
..........................................TGAAAAAACTAACAATCGGAATGCAAA..................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0
...................................................................................................TGGCATGCGGCTGTAAAATCCAATTA............................................................................................................................. 26 1 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................................CATACATAACATCTGGCATGCGGCTGT......................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................CATATAGAATCCAAGCATCCAAGTAGCATT........................... 30 1 1 1.00 1 0 0 0 1 0 0 0 0
...................................................................................................TGGCATGCGGCTGTAAAATCCAAT............................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0
....................................................................................................GGCATGCGGCTGTAAAATC................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................................ATCCAAGTAGCATGCTCATCAAGG................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................TACATAACATCTGGCATGCGGCTGT......................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0
.........................................................TCGGAATGCAAATTCAAAACTATACTACCCA.................................................................................................................................................................. 31 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................TCTGGCATGCGGCTGTAAAATCCAATT.............................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0
..................................................................................................................................................................TTCTGCACTCACAATGAAAAACGA................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................................TGGCATGCGGCTGTAAAATCCAATTTAAC.......................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................ACAATCGGAATGCAAATTCAAAACT............................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................TGGCATGCGGCTGTAAAATCCAATA.............................................................................................................................. 25 1 1 1.00 1 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................CTGATCAAGGCTTATAATCC....... 20 3 6 0.17 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

GGATTAAATAAAAAGGAAAGAAAGGAGGGTGGCTAGGTGTAGACTTTTTTGATTGTTAGCCTTACGTTTAAGTTTTGATATGATGGGTATGTATTGTAGACCGTACGCCGACATTTTAGGTTAAATTGTTTATTTAGTTTGGTTAGTTTGGTTGAGTTGAAAAAGACGTGAGTGTTACTTTTTGCTTGTTTTGGTATATCTTAGGTTCGTAGGTTCATCGTACGAGTAGTTCCGGATATTAGACGTAATA
*************************************************************..((......................................................................................))************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
............................................................................................................................................................................................TGTTGGTATACCTAAGGTTCGT........................................ 22 3 3 3.00 9 9 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTATACCTCAGGTTCGT........................................ 21 2 2 2.50 5 5 0 0 0 0 0 0
..........................................................................................................................................................................................GGTTTTGGTATACCTCAGGTTCGT........................................ 24 3 2 1.50 3 3 0 0 0 0 0 0
..............................................................................................................................................................................................TTGGTATATATTAGGTTAGT........................................ 20 2 2 1.00 2 0 2 0 0 0 0 0
...............................................................................................................................................................................................TGGTATACATCAGGTTCGTAGG..................................... 22 3 3 1.00 3 0 0 3 0 0 0 0
............................................................................................................................................................................................TTTTGGTATACCTCAGGTTCGT........................................ 22 2 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................TTGGTATATCTCAGGTTCGT........................................ 20 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................TTAGTTTGGTTGAGTGGAAAA....................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTATATCTTAGGTTCGTAGGT.................................... 25 0 1 1.00 1 0 0 1 0 0 0 0
..........................................................................TTGATATGTTGGGTATGGAGT........................................................................................................................................................... 21 3 1 1.00 1 0 0 0 1 0 0 0
............................................................................................................................................................................................TTTTGGTATACCTAAGGTTCGT........................................ 22 2 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGAATACCTCAGGTTCGT........................................ 21 3 3 0.67 2 2 0 0 0 0 0 0
..............................................................................................................................................................................................TTGGTATACCTAAGGTTCGT........................................ 20 2 3 0.67 2 2 0 0 0 0 0 0
............................................................................................................................................................................................TGTTGGTTTATCTCAGGTTCGT........................................ 22 3 2 0.50 1 1 0 0 0 0 0 0
............................................................................................................................................................................................TTTTGGGATACCTCAGGTTCGT........................................ 22 3 2 0.50 1 1 0 0 0 0 0 0
............................................................................................................................................................................................TATTGGTATATATCAGGTTCGT........................................ 22 3 2 0.50 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................TTGGTATACTTTAGGTTCGT........................................ 20 2 3 0.33 1 0 1 0 0 0 0 0
.............AGGAAAGAATGGATGGTG........................................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 1 0 0
..........................................................................................................................................................................................TGTGTTGGTATACATTAGGTTCG......................................... 23 3 3 0.33 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................TTGGTGTATTTTAGGTTCGT........................................ 20 2 3 0.33 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................TTTGGCATACCTCAGGTTCGT........................................ 21 3 3 0.33 1 1 0 0 0 0 0 0
......................................................................................................................................................................GGAGACTGTTACTTTTTGCTT............................................................... 21 3 4 0.25 1 0 0 0 0 0 1 0
...............................................................................................................................................................................................TGGTATATGTCAGGTTCGT........................................ 19 2 4 0.25 1 0 0 1 0 0 0 0
.........................AGTGTGGCAAGGTGTAGGCT............................................................................................................................................................................................................. 20 3 5 0.20 1 0 0 0 0 1 0 0
...............................................................................................................................................................................................TGGTATATTTTTGGTTCGT........................................ 19 2 7 0.14 1 0 1 0 0 0 0 0
............................................................................................................................................................................................TGTTGGTATATATTAGTTTCGT........................................ 22 3 7 0.14 1 0 1 0 0 0 0 0
.......................................................................................................................................................................GAGACTGTTACTTTATGCTT............................................................... 20 3 8 0.13 1 0 0 0 1 0 0 0
.............................................................................................................................................GTAAGATTGGTTGAGTTGAT......................................................................................... 20 3 10 0.10 1 0 0 0 1 0 0 0
.........................AGGGAGGCTAGGTGT.................................................................................................................................................................................................................. 15 1 12 0.08 1 0 0 0 0 1 0 0
..............................................................................................................................................................................................TTGGAATACGTTAGGTTCGT........................................ 20 3 13 0.08 1 0 1 0 0 0 0 0
............................GTGGCAAGGTGTAGGCT............................................................................................................................................................................................................. 17 2 14 0.07 1 0 0 0 0 0 0 1
.......................................................................................................................................................................GAGACTGTTACTTTATGCT................................................................ 19 3 20 0.05 1 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................CATCGTACGACTAGGT................... 16 2 20 0.05 1 0 0 0 0 0 1 0
..............................................................................................................................................................................................TCGGTATACTTTAGGTTCGT........................................ 20 3 20 0.05 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................TTGTTATACCTAAGGTTCGT........................................ 20 3 20 0.05 1 1 0 0 0 0 0 0
..........................................................................................................................................................................ACTGTTACTTTATGCTT............................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:19464938-19465187 - dsi_5731 CCTAATTTA--TTTTTC---CTTTCTTTCCT----CCC------------------------ACC------------------------GATC-C--ACATCTG-AAAAAACTAACAATCGGAATGCAAATTCAAA--------------ACTATAC-TACCCAT--ACATAACA---------------------------TCTGGCATGCG---GCTG---TAAAAT------C-CAATTTAACA--AAT-------------------AAATCAAACCAATCAAACCAACTCAACTTTTTCTGCACTCACAAT------------------GA-------AAA--------------AC-------G-------AACAAAACCATATAGAATCCAAGCATCCAAGT-------------AGCATGC----------TCATCAAGGCCT-------ATAATCTGCAT-TAT-
droSec2 scaffold_0:20265783-20266026 - CCTAATTTA--TTTTTC---CTTTCTTTCCT----CCC------------------------ACC------------------------GATC-C--ACATCTA--AAAAACTAACAATCGGAATGCAAATTCAAA--------------ACTATAC-TACCCAT--ACATAACA---------------------------TCTGGCATGCG---GCTG---TAAAAT------C-CAATTTAACA--AAT-------------------AAATCAAACCAATCA-----ACTCAACTTTTTCTGCACTCACAAT------------------GA-------AAA--------------AC-------G-------AACAAAACCATATAGAATCCAAGCATCCAAGT-------------AGCATGC----------TCATCAAGGCCT-------ATAATCTGCAT-TAT-
dm3 chr3R:19927719-19927962 - CCTAATTTA--TTTTTC---CTTTCTTTCCT----CCC------------------------ACC------------------------GATC-C--ACATCTG--AAAAACTAACAATCGGAATGCAAATTCAAA--------------ACTATAC-TACTCAT--ACATAACA---------------------------TCTGGCATGCG---GCTG---TAAAAT------C-CAATTTAACA--AATA------------------AAATCAAACCAATCA-----ACTCAACTTTTTCTGCACTCACAAT------------------GA-------AAA--------------AC-------G-------AAC-AAATCATATAGAATCCAAGCATCCAAGT-------------AGCATGC----------TCATCAAGGCCT-------ATAATCTGCAT-TAT-
droEre2 scaffold_4820:8131231-8131478 + CCTAATTTA--TTTTTC---CTTTCTTTCCA----CCC------------------------ACC------------------------GCCC-C--ACATCTC--AATAACTAACAATCGGAATGCAAATTCAAA--------------ACTATAC-TACCCAC--ACATACC-CA--------A-AATA---------TCTCTGGCATGCG---GCTG---TAAAAA------C-CAATTTAACG--AAT-------------------AAATCAAACCAA----------TCAAC-TCTTCTGCACTCACAAT------------------AA-------AAA--------------AC-------G-------AAC-AAACCATATAGAATCCAAGCATCCAAGT-------------AGCATGCT----C---CTCATCAAGGCCT-------ATAATCTGCAT-TAT-
droYak3 3R:26575014-26575288 + CCTAATTTA--TTTTTC---CTTTCTTTCCT----CCC------------------------ACC------------------------GCCC-C--ACATCTC--AATAACTAACAATCGGAATGCAAATTCAAA--------------ACTATAC-TACCCATATACATAACCC---------A-AATA---------TCTCTGGCATGCG---GCTG---TAAAAA------C-CAATTTAACA--AAT-------------------AAAACAAACCAA----------TCAAC-TCTTCTGCACTCACAATTCTGCAAAAATAAAAAATGA-------AAA--------------AAACAAAATG-------AAC-AAACCATATAGAATCCAAGCATCCAAGT-------------AGCATGCT----C---CTCATCAAGGCCT-------ATAATCTGCAT-TAT-
droEug1 scf7180000409798:463509-463789 + CCTAATTTA--TTTTTT---CTTTCTTTCCTTCC--CC----AC--------------CCACACC------------------------ACCCTGT--CACCTCAAAAAAACTAACAATCGGAATGCAAATTCAAATATATATCTAAACATATATAT-TCCTCAT--ACATAACCCG--------A-AATA--------TTCTCTGGCATGCG---GCTG---TAAAAA------CTCAATTTAACAA-AAT-------------------AAATCAAACCAA----------TAAAC-TTTTCTGCACTCACAAT------------------AATAACAAAAAA--------------AC-------C-------AAA-AACCCATATAGAATCCAAGCAAGCAAGT-------------AGCATGC----------TCATCAAGGCCT-------ATAATCTGCAT-TAT-
droBia1 scf7180000302136:275355-275605 - CCT-----A--TTTTTC---CTTTCTTTCCT----CTC------------------------CCC------------------------------------CTC-AAAAAACTAACAATTGGAATGCAAAATCAAATATA----------AATATAT-TCCTCAC--ACATAACCCA------AAA-AATA--------TTCCCCTGCATGCG---GCTG---TAAAAATATGAAA-CAACTTAACC--AAC-------------------AAATCAAACCA-----------TCAAC-TTTTCTGCACTCACTAT------------------GA-------AAA--------------AC-------A--CTGAAAACAAAACCACATAGAATCCAAGCAAGCAAGT-------------AGCATGC----------TCATCCAGGCCC-------ATAATCTACCT-TAT-
droTak1 scf7180000414373:121289-121555 + CCTAATTTA--TTTTTC---CTTTCTTTCCTCCC-CCC------------------------ACC------------------------GCCCCCTCACATCTC--AAAAACTAACAATCGGAATGCAAATTCAAATATA--TC------TATATAT-TCCTCAT--ACATAACCCAA---CAAAA-AATA--------TTCTCTGGCATGCG---GCTG---TAAAAAA----AATCAATTTAACAAAAAT-------------------AAATCAAACCAA----------TCAAC-TTTTCTGCACTCACAA---------------------------------------------AT-------GAACT---AA-AAAACCACATAGAATCCAAGCAAGCAAGT-------------AGCATGC----------TCATCAAGGCCT-------ATAATCTGCAT-TAT-
droEle1 scf7180000491008:227086-227329 - CCTAATTTA--TTTTTC---CTTTCTTCCCT----CCC------------------------CCC------------------------GCCCTCT--CATACC--AAAAACTAACAATCGGAATGCCAATTTAAA--------------TATATTCCTCCTCAT--ACATAACAC---------T-ACTT--------TTCTATGGCATGCG---GCTG---CTAAAA------A-CAATTTAACA--AAT-------------------AAATCAAACCGATCG-----A-TCAAC-TTATCTGCACTCACAAT------------------AA-------A-------------------------------------AAACCATATAGAATCCAAGCAAACAAGT-------------AGCATGC----------TCATCAAGGCCT-------ATAAAATGCAT-AAC-
droRho1 scf7180000779477:2733-2967 - CCTAATTTA--TATTTC---CTTTCTTTTCT----C-C------------------------ACC------------------------GCCCTCT--CATCCC--AAAAACTAACAATCGGAATGCAAATTTAAA----------------TATAT-TTCCAAT--ACATAACCC---------A-AATT--------TTCTATGGCATGCG---GCTG---TTGAAA--------CAACTTAACA--AAT-------------------AAATCAAACCAA----------TCAAC-TTATCTGCACTCACAAT------------------AT-------A-------------------------------------AATCCATATAGAATCCAAGCAAGCAAGT-------------AGCATGC----------TCATCAAGGCCT-------ATATTCTGCAT-AAT-
droFic1 scf7180000453912:1093077-1093319 - CCTAATTTA--TTTTTC---CTTTCTTTCCG----CCC--CCTT-------------------TG------------------------GATCAT--ACATCAC-AAAAAACTAACAATCGGAATGCAA-TCCAAA-----------------ATAT-TCCTCAT--ACACAACCC---------A-ACTA--------TTCTATGGCATGCG---GCTG---TTGAAA------A-CAATTTAACAACAACA------------------AAATCAAACCAA----------TCAAC-TTTTCTGCACTCACAAT------------------AA-------A-----------------------------------C-AATCCATATAGAATCCAAGCAACCAAGT-------------AGCATGC----------TCATCAAGGCCA-------ATAATCTGCAT-TAG-
droKik1 scf7180000302778:337163-337428 - CCTAATTTA--TTT-TC---CTTTCTTTCA-----------------CATATCCTCAAAAAA---------------------------------T--AA-AAC--CAAAACTAACAATCGGAAT-CAAATTCAAA------------------TAT-TCTCCAT--ACCTAATCCAAACACCAAA-AATA--------TTCTATGGCATGCT---GCTC---TTGAAA------T-CAATTTAACAAACATTAACAATTTAATAATATGTGAATCA----AA----------TCGAC-CTTTACGCACTCACCAT------------------AC-------ACT--------------TG----G--G-------TGC-ACTTTACACAGTATCCAAGCCAGCAAGT-------------AGCATGC----------TCATCATGGCCT-------ATAATCTGCAT-----
droAna3 scaffold_12911:3224901-3225161 + CCTAATTTA--TTTTTC---GTTTTTTTCCTGCC--CC----GC--------------CTCCACCACCACT--------ACCTACCACCACCCTCC--CACCAC--AACAACTAACAATTGGAATGCAAACA------------------TGTACAT-TCCTCAT--AAATAAATC---------A-AATA---TGTA-CTCCCCGGCATGCTGCGGCTT---TTGAAAT----AA-CAATTTAACAAAAACT------------------AAAACACACCA------------------------------------------------------------------------------------------------------CATTGTAGTATTCAAGCCACCAAG-----AACTAGCATAGCATGCT----CATGCTCATCGAGGCCC--GTACCGTACTCTGCAT-AAT-
droBip1 scf7180000396640:91498-91696 + CCTAATTTA--TTTTTC---GTTTTTTTCCTGCC--CC------------------------ACC------------------------ACCCCCC--CACCAC--AACAACTAACAATCGGAATGCAAAAA------------------TGCATAC-TCCCCAT--AAACAAATC---------A-AATA---TG----ACTCTGGCATGCT-----------AA---------------------------------------------------------------------------------------------------------------------AAAACCAATCACG----------------------------CATTGTAGAATTCAAGCCACCAAG-----AACT-----AGCATGCT----CATGCTCATCGAGGCCT-------GTAATCCGCAT-AATA
dp5 2:14457345-14457605 - CTAAATTTTAATTTGTATTTCTTTCTTTCCT----TCCTTCCTTCCAAAC------------ACC-------------------------CCCCGT--AACATC--AACTACTAACAATTGGAATGCT---TTAA------------------------CCCCAT--A---------------AAACACTATTCTGTTCCTCTGCGGCATGCG---ATATTTCTACAAAA----AACTGATTTAAAA--TAC-------------------TGACCAA------------------------------------------------------------------AAATCAATCACGAATCAC-------G-------A----------ACAGTATCCAAGCAAGCAAATAGAGAATC-----GGCATGCAATATCCAGAAAATACTGGCTTTTCTACCACACTCTACATATAT-
droPer2 scaffold_0:5964905-5965164 + CTAAATTTTAATTTGTATTTCTTTCTTTCCT----TCCTTCCTTCCAA--------------ACA------------------------TCCCCGT--AACATC--AACTACTAACAATTGGAATGCT---TTAA------------------------CCCCAT--A---------------AAACACTATTCTGTTCCTCTGCGGCATGCG---GTATTTCTACAAAA----AACTGATTTAAAA--TAC-------------------TGACCAA------------------------------------------------------------------AAATCAATCACGAATCAC-------G-------A----------ACAGTATACAAGCAAGCAAATAGAGAATC-----GGCATGCAATATCCAGAAAATACTGGCTTTTCTACCACACTCTACATATAT-
droWil2 scf2_1100000004902:5981369-5981491 + CATGCTTTA--TTTATC---TTTTTTTCTTT-CCCT-A----AA--------------ATACAAAAAACTTTCCCATCAATCTGAACTAACACAAC--AACAAC--AACAACAATAA-------------------------------------------------------------------------------------AATGGCATGCG---AATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATA-TA-------ATTATTGAAAT-AAA-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCTAATTTA--TTTTTC---CTTTCTTTCCT----CCC------------------------ACC------------------------GATC-C--ACATCTG-AAAAAACTAACAATCGGAATGCAAATTCAAA--------------ACTATAC-TACCCAT--ACATAACA---------------------------TCTGGCATGCG---GCTG---TAAAAT------C-CAATTTAACA--AAT-------------------AAATCAAACCAATCAAACCAACTCAACTTTTTCTGCACTCACAAT------------------GA-------AAA--------------AC-------G-------AACAAAACCATATAGAATCCAAGCATCCAAGT-------------AGCATGC----------TCATCAAGGCCT-------ATAATCTGCAT-TAT-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................GT-------------AGCATGC----------TCATCAAGGCCT-------................2113.00300300000000000000
..........................................................................................................................................................................................................TCTGGCATGCG---GCTG---TAAAAT------C-CAA..........................................................................................................................................................................................................................................2512.00200000001000001000
.............................................................................................................................................................................................................................................................................................................TTCTGCACTCACAAT------------------GA-------AAA--------------AC-------G-------AACA.............................................................................................2711.00100000000010000000
......................................................................................................TG-AAAAAACTAACAATCGGAATGCAAA........................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
............................................................................................................................................................................................................TGGCATGCG---GCTG---TAAAAT------C-CAATTA.......................................................................................................................................................................................................................................2611.00100000000000010000
..................................................................................................................................................................CAT--ACATAACA---------------------------TCTGGCATGCG---GCTG---T..........................................................................................................................................................................................................................................................2711.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CATATAGAATCCAAGCATCCAAGT-------------AGCATT..............................................3011.00100000000000001000
............................................................................................................................................................................................................TGGCATGCG---GCTG---TAAAAT------C-CAAT.........................................................................................................................................................................................................................................2411.00100000000000010000
.............................................................................................................................................................................................................GGCATGCG---GCTG---TAAAAT------C-.............................................................................................................................................................................................................................................1911.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGT-------------AGCATGC----------TCATCAAGG..........................2411.00100100000000000000
....................................................................................................................................................................T--ACATAACA---------------------------TCTGGCATGCG---GCTG---T..........................................................................................................................................................................................................................................................2511.00100000010000000000
......................................................................................................................TCGGAATGCAAATTCAAA--------------ACTATAC-TACCCA......................................................................................................................................................................................................................................................................................................................3111.00100000001000000000
..........................................................................................................................................................................................................TCTGGCATGCG---GCTG---TAAAAT------C-CAATT........................................................................................................................................................................................................................................2711.00100000000010000000
.............................................................................................................................................................................................................................................................................................................TTCTGCACTCACAAT------------------GA-------AAA--------------AC-------G-------A................................................................................................2411.00100000001000000000
............................................................................................................................................................................................................TGGCATGCG---GCTG---TAAAAT------C-CAATTTAAC....................................................................................................................................................................................................................................2911.00100000001000000000
..................................................................................................................ACAATCGGAATGCAAATTCAAA--------------ACT.................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
............................................................................................................................................................................................................TGGCATGCG---GCTG---TAAAAT------C-CAATA........................................................................................................................................................................................................................................2511.00100000000000001000
droSec2
CCTAATTTA--TTTTTC---CTTTCTTTCCT----CCC------------------------ACC------------------------GATC-C--ACATCTA--AAAAACTAACAATCGGAATGCAAATTCAAA--------------ACTATAC-TACCCAT--ACATAACA---------------------------TCTGGCATGCG---GCTG---TAAAAT------C-CAATTTAACA--AAT-------------------AAATCAAACCAATCA-----ACTCAACTTTTTCTGCACTCACAAT------------------GA-------AAA--------------AC-------G-------AACAAAACCATATAGAATCCAAGCATCCAAGT-------------AGCATGC----------TCATCAAGGCCT-------ATAATCTGCAT-TAT-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................ATAACA---------------------------TCTGGCATGCG---GC................................................................................................................................................................................................................................................................1912.0020011
...AATTTA--TTTTTC---CTTTCTTTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
........................................................................................................................................................................CATAACA---------------------------TCTGGCATGCG---GC................................................................................................................................................................................................................................................................2011.0010001
............................................................................................................................TGCAAATTCAAA--------------ACTATAC-............................................................................................................................................................................................................................................................................................................................1911.0011000
......................................................................................................TA--AAAAACTAACAATCGGAAT.............................................................................................................................................................................................................................................................................................................................................................2111.0011000
dm3
CCTAATTTA--TTTTTC---CTTTCTTTCCT----CCC------------------------ACC------------------------GATC-C--ACATCTG--AAAAACTAACAATCGGAATGCAAATTCAAA--------------ACTATAC-TACTCAT--ACATAACA---------------------------TCTGGCATGCG---GCTG---TAAAAT------C-CAATTTAACA--AATA------------------AAATCAAACCAATCA-----ACTCAACTTTTTCTGCACTCACAAT------------------GA-------AAA--------------AC-------G-------AAC-AAATCATATAGAATCCAAGCATCCAAGT-------------AGCATGC----------TCATCAAGGCCT-------ATAATCTGCAT-TAT-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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.....................................................................................................................................................................................................................................................................................................................................................................................................TAGAATCCAAGCATCCAAGT-------------AGCAT...............................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................TCAAACCAATCA-----ACTCAACTTTTTCTGCAC.....................................................................................................................................................................3012.0020000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................GATC-C--ACATCTG--AAAAACTAACAATCGGAA..............................................................................................................................................................................................................................................................................................................................................................3012.0020000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TAGAATCCAAGCATCCAAGT-------------AGCA................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
....................................................................................................................................................................................................................................................................................................CTCAACTTTTTCTGCACTCACAAT------------------GA-------AA.................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TATAC-TACTCAT--ACATAACA---------------------------TCTGGC..........................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TCTGGCATGCG---GCTG---TAAAAT------C-CAATTT.......................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............TTTTC---CTTTCTTTCCT----CCC------------------------ACC------------------------GATC-C--AC.......................................................................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TTTTCTGCACTCACAAT------------------GA-------AAA--------------AC-------G-------AA...............................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TC-C--ACATCTG--AAAAACTAACAAT...................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGCATCCAAGT-------------AGCATGC----------TCATCAAG...........................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................AACAATCGGAATGCAAATTCAAA--------------ACTATAC-............................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................CTTTTTCTGCACTCACAAT------------------GA-------AAA--------------AC-------G-------AA...............................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TTTCTTTCCT----CCC------------------------ACC------------------------GATC-C--ACATC....................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TC---CTTTCTTTCCT----CCC------------------------ACC------------------------GATC-C--AC.......................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGGCCT-------ATAATCTGCAT-....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................T-------------AGCATGC----------TCATCAAGGCCT-------ATAA............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGC----------TCATCAAGGCCT-------ATAATC..........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGCCT-------ATAATCTGCAT-TAT-2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................T--ACATAACA---------------------------TCTGGCATGCG---G.................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................A---------------------------TCTGGCATGCG---GCTG---TAAAAC------...............................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................GCTG---TAAAAT------C-CAATTTAACA--AAT..............................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................ATCTG--AAAAACTAACAATCGGAATGCAAAT.......................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................CTG--AAAAACTAACAATCGGAAG.............................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TTTTCTGCACTCACAAT------------------GA-------AAA--------------AC-------G-------AAC-.............................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TCAAACCAATCA-----ACTCAACTT..............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TCAAA--------------ACTATAC-TACTCAT--A..................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CCTAATTTA--TTTTTC---CTTTCTTTCCA----CCC------------------------ACC------------------------GCCC-C--ACATCTC--AATAACTAACAATCGGAATGCAAATTCAAA--------------ACTATAC-TACCCAC--ACATACC-CA--------A-AATA---------TCTCTGGCATGCG---GCTG---TAAAAA------C-CAATTTAACG--AAT-------------------AAATCAAACCAA----------TCAAC-TCTTCTGCACTCACAAT------------------AA-------AAA--------------AC-------G-------AAC-AAACCATATAGAATCCAAGCATCCAAGT-------------AGCATGCT----C---CTCATCAAGGCCT-------ATAATCTGCAT-TAT-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............TC---CTTTCTTTCCA----CCC------------------------ACC------------------------GCCC-C--ACA......................................................................................................................................................................................................................................................................................................................................................................................2714.0040000004
...................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGT-------------AGCATGCT----C---CTCATCAAGGCCT-------................2813.0030000210
........................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCT----C---CTCATCAAGGC.........................1811.0010100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT----C---CTCATCAAGGCCT-------ATAAT...........2311.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TAGAATCCAAGCATCCAAGT-------------AGCATGCT----........................................2811.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................AAACCATATAGAATCCAAG..........................................................................1911.0010001000
.................................................................................................................................................................................................................................................TTAACG--AAT-------------------AAATCAAACCAA----------TCAAC-...............................................................................................................................................................................2611.0011000000
.....................................................................................................................................................................................................................................................................................AACCAA----------TCAAC-TCTTCTGCACT....................................................................................................................................................................2211.0010100000
....................................................................................................................................................................................................................................................................................................................................................................................................................CAAGT-------------AGCATGCT----C---CTCATCAAGGCC........................2611.0011000000
..............................................................................................................................................................TACCCAC--ACATACC-CA--------A-AATA---------TCTCT.............................................................................................................................................................................................................................................................................2611.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCATCCAAGT-------------AGCATGCT----C---C...................................2611.0010100000
..........................................................................................................................................................................TACC-CA--------A-AATA---------TCTCTGGCATGCG---GC................................................................................................................................................................................................................................................................2611.0011000000
...............................................................................................................................................................................................................................................................................................................................................A-------AAA--------------AC-------G-------AAC-AAACCATAT....................................................................................1911.0011000000
.........................................................................................................................................................................ATACC-CA--------A-AATA---------TCTCTGGC..........................................................................................................................................................................................................................................................................2011.0010100000
.......................................................................................................................................................................ACATACC-CA--------A-AATA---------TCTCTGGCATG.......................................................................................................................................................................................................................................................................2511.0011000000
.....................................................................................................................................................................................................................................................................................AACCAA----------TCAAC-TCTTCTGC.......................................................................................................................................................................1911.0011000000
.............................................................................................................AACTAACAATCGGAATGCAAATTC.....................................................................................................................................................................................................................................................................................................................................................2411.0010000100
..............................................................................................................................................................................................A---------TCTCTGGCATGCG---GCTG---T..........................................................................................................................................................................................................................................................1911.0011000000
...................................................................................................................................................................................................................................................................................CAAACCAA----------TCAAC-TCTTCTGCACTCACAA...............................................................................................................................................................2911.0011000000
........................................................................................................................................................................................................TCTCTGGCATGCG---GCTG---TAAAAA------...............................................................................................................................................................................................................................................2311.0011000000
.....................................................................................................................................................................................................................................................................................AACCAA----------TCAAC-TCTTCTGCACTCAC.................................................................................................................................................................2511.0010100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT----C---CTCATCAAGGCCT-------ATAATCTGCAT-....2911.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGT-------------AGCATGCT----C---CTCATCAAGGCC........................2711.0010000100
...........................................................................................................................................................................................................................................................T-------------------AAATCAAACCAA----------TCAAC-TCTTCTGCAC.....................................................................................................................................................................2811.0011000000
...............................................................................................................................................................................................................................................ATTTAACG--AAT-------------------AAATCAAACC.................................................................................................................................................................................................2111.0010100000
droYak3
CCTAATTTA--TTTTTC---CTTTCTTTCCT----CCC------------------------ACC------------------------GCCC-C--ACATCTC--AATAACTAACAATCGGAATGCAAATTCAAA--------------ACTATAC-TACCCATATACATAACCC---------A-AATA---------TCTCTGGCATGCG---GCTG---TAAAAA------C-CAATTTAACA--AAT-------------------AAAACAAACCAA----------TCAAC-TCTTCTGCACTCACAATTCTGCAAAAATAAAAAATGA-------AAA--------------AAACAAAATG-------AAC-AAACCATATAGAATCCAAGCATCCAAGT-------------AGCATGCT----C---CTCATCAAGGCCT-------ATAATCTGCAT-TAT-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................CC---------A-AATA---------TCTCTGGCATGCG---GCTG---T..........................................................................................................................................................................................................................................................2511.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................CATCCAAGT-------------AGCATGCT----C---CTCATCAAGGC.........................2911.00100000010000
............................................................................................................................................................................ACCC---------A-AATA---------TCTCTGGCATGCG---GC................................................................................................................................................................................................................................................................2411.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGT-------------AGCATGCT----C---CTCATCAAGGCC........................2811.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGT-------------AGCATGCT----C---CTCATCAA............................2511.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGT-------------AGCATGCT----C---CTCAT...............................2111.00101000000000
........................................................................................................................................................................................................................................................................................................................CAATTCTGCAAAAATAAAAAA.............................................................................................................................................2111.00101000000000
...............................................................................................................................................................................................................CATGCG---GCTG---TAAAAA------C-C............................................................................................................................................................................................................................................1811.00110000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGT-------------AGCATGCT----C---CTCATC..............................2311.00100000010000
droEug1
CCTAATTTA--TTTTTT---CTTTCTTTCCTTCC--CC----AC--------------CCACACC------------------------ACCCTGT--CACCTCAAAAAAACTAACAATCGGAATGCAAATTCAAATATATATCTAAACATATATAT-TCCTCAT--ACATAACCCG--------A-AATA--------TTCTCTGGCATGCG---GCTG---TAAAAA------CTCAATTTAACAA-AAT-------------------AAATCAAACCAA----------TAAAC-TTTTCTGCACTCACAAT------------------AATAACAAAAAA--------------AC-------C-------AAA-AACCCATATAGAATCCAAGCAAGCAAGT-------------AGCATGC----------TCATCAAGGCCT-------ATAATCTGCAT-TAT-SizeHit CountTotal NormTotal
No Reads
droBia1
CCT-----A--TTTTTC---CTTTCTTTCCT----CTC------------------------CCC------------------------------------CTC-AAAAAACTAACAATTGGAATGCAAAATCAAATATA----------AATATAT-TCCTCAC--ACATAACCCA------AAA-AATA--------TTCCCCTGCATGCG---GCTG---TAAAAATATGAAA-CAACTTAACC--AAC-------------------AAATCAAACCA-----------TCAAC-TTTTCTGCACTCACTAT------------------GA-------AAA--------------AC-------A--CTGAAAACAAAACCACATAGAATCCAAGCAAGCAAGT-------------AGCATGC----------TCATCCAGGCCC-------ATAATCTACCT-TAT-SizeHit CountTotal NormTotal
No Reads
droTak1
CCTAATTTA--TTTTTC---CTTTCTTTCCTCCC-CCC------------------------ACC------------------------GCCCCCTCACATCTC--AAAAACTAACAATCGGAATGCAAATTCAAATATA--TC------TATATAT-TCCTCAT--ACATAACCCAA---CAAAA-AATA--------TTCTCTGGCATGCG---GCTG---TAAAAAA----AATCAATTTAACAAAAAT-------------------AAATCAAACCAA----------TCAAC-TTTTCTGCACTCACAA---------------------------------------------AT-------GAACT---AA-AAAACCACATAGAATCCAAGCAAGCAAGT-------------AGCATGC----------TCATCAAGGCCT-------ATAATCTGCAT-TAT-SizeHit CountTotal NormTotal
No Reads
droEle1
CCTAATTTA--TTTTTC---CTTTCTTCCCT----CCC------------------------CCC------------------------GCCCTCT--CATACC--AAAAACTAACAATCGGAATGCCAATTTAAA--------------TATATTCCTCCTCAT--ACATAACAC---------T-ACTT--------TTCTATGGCATGCG---GCTG---CTAAAA------A-CAATTTAACA--AAT-------------------AAATCAAACCGATCG-----A-TCAAC-TTATCTGCACTCACAAT------------------AA-------A-------------------------------------AAACCATATAGAATCCAAGCAAACAAGT-------------AGCATGC----------TCATCAAGGCCT-------ATAAAATGCAT-AAC-SizeHit CountTotal NormTotal
No Reads
droRho1
CCTAATTTA--TATTTC---CTTTCTTTTCT----C-C------------------------ACC------------------------GCCCTCT--CATCCC--AAAAACTAACAATCGGAATGCAAATTTAAA----------------TATAT-TTCCAAT--ACATAACCC---------A-AATT--------TTCTATGGCATGCG---GCTG---TTGAAA--------CAACTTAACA--AAT-------------------AAATCAAACCAA----------TCAAC-TTATCTGCACTCACAAT------------------AT-------A-------------------------------------AATCCATATAGAATCCAAGCAAGCAAGT-------------AGCATGC----------TCATCAAGGCCT-------ATATTCTGCAT-AAT-SizeHit CountTotal NormTotal
No Reads
droFic1
CCTAATTTA--TTTTTC---CTTTCTTTCCG----CCC--CCTT-------------------TG------------------------GATCAT--ACATCAC-AAAAAACTAACAATCGGAATGCAA-TCCAAA-----------------ATAT-TCCTCAT--ACACAACCC---------A-ACTA--------TTCTATGGCATGCG---GCTG---TTGAAA------A-CAATTTAACAACAACA------------------AAATCAAACCAA----------TCAAC-TTTTCTGCACTCACAAT------------------AA-------A-----------------------------------C-AATCCATATAGAATCCAAGCAACCAAGT-------------AGCATGC----------TCATCAAGGCCA-------ATAATCTGCAT-TAG-SizeHit CountTotal NormTotal
No Reads
droKik1
CCTAATTTA--TTT-TC---CTTTCTTTCA-----------------CATATCCTCAAAAAA---------------------------------T--AA-AAC--CAAAACTAACAATCGGAAT-CAAATTCAAA------------------TAT-TCTCCAT--ACCTAATCCAAACACCAAA-AATA--------TTCTATGGCATGCT---GCTC---TTGAAA------T-CAATTTAACAAACATTAACAATTTAATAATATGTGAATCA----AA----------TCGAC-CTTTACGCACTCACCAT------------------AC-------ACT--------------TG----G--G-------TGC-ACTTTACACAGTATCCAAGCCAGCAAGT-------------AGCATGC----------TCATCATGGCCT-------ATAATCTGCAT-----SizeHit CountTotal NormTotal
No Reads
droAna3
CCTAATTTA--TTTTTC---GTTTTTTTCCTGCC--CC----GC--------------CTCCACCACCACT--------ACCTACCACCACCCTCC--CACCAC--AACAACTAACAATTGGAATGCAAACA------------------TGTACAT-TCCTCAT--AAATAAATC---------A-AATA---TGTA-CTCCCCGGCATGCTGCGGCTT---TTGAAAT----AA-CAATTTAACAAAAACT------------------AAAACACACCA------------------------------------------------------------------------------------------------------CATTGTAGTATTCAAGCCACCAAG-----AACTAGCATAGCATGCT----CATGCTCATCGAGGCCC--GTACCGTACTCTGCAT-AAT-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGAGGCCC--GTACCGTACTCTGC.......2512.002110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCTCATCGAGGCCC--GTACC................2211.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGAGGCCC--GTACCGTACT...........2111.001010000
..................................................................................................................................................................................................................................................TAACAAAAACT------------------AAAACACACC.................................................................................................................................................................................................2111.001010000
............................................................................................................................................................................................................................................................T------------------AAAACACACCA------------------------------------------------------------------------------------------------------CATTGTAGT.................................................................................2111.001001000
......................................................................................................................................................................................................................................................................................ACCA------------------------------------------------------------------------------------------------------CATTGTAGTATTCAAGC.........................................................................2111.001000001
...................................................................................................................................................................................................................................................AACAAAAACT------------------AAAACACACCA------------------------------------------------------------------------------------------------------CATT......................................................................................2511.001010000
.................................................................................................................................................................................................................................................................................AACACACCA------------------------------------------------------------------------------------------------------CATTGTAGT.................................................................................1811.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCC--GTACCGTACTCTGCAT-AA..2111.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................G-----AACTAGCATAGCATGCT----C.......................................1911.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCCACCAAG-----AACT.........................................................1911.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCC--GTACCGTACTCTGCAC-....2111.001010000
droBip1
CCTAATTTA--TTTTTC---GTTTTTTTCCTGCC--CC------------------------ACC------------------------ACCCCCC--CACCAC--AACAACTAACAATCGGAATGCAAAAA------------------TGCATAC-TCCCCAT--AAACAAATC---------A-AATA---TG----ACTCTGGCATGCT-----------AA---------------------------------------------------------------------------------------------------------------------AAAACCAATCACG----------------------------CATTGTAGAATTCAAGCCACCAAG-----AACT-----AGCATGCT----CATGCTCATCGAGGCCT-------GTAATCCGCAT-AATASizeHit CountTotal NormTotal
No Reads
dp5
CTAAATTTTAATTTGTATTTCTTTCTTTCCT----TCCTTCCTTCCAAAC------------ACC-------------------------CCCCGT--AACATC--AACTACTAACAATTGGAATGCT---TTAA------------------------CCCCAT--A---------------AAACACTATTCTGTTCCTCTGCGGCATGCG---ATATTTCTACAAAA----AACTGATTTAAAA--TAC-------------------TGACCAA------------------------------------------------------------------AAATCAATCACGAATCAC-------G-------A----------ACAGTATCCAAGCAAGCAAATAGAGAATC-----GGCATGCAATATCCAGAAAATACTGGCTTTTCTACCACACTCTACATATAT-SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................TATTCTGTTCCTCTGCGGCATGCG---A.................................................................................................................................................................................................................................................................25128.0028000000015130
...............................................................................................................................................................................................TTCTGTTCCTCTGCGGCATGCG---ATATT.............................................................................................................................................................................................................................................................2713.0030000000300
.............................................................................................................................................................................................TATTCTGTTCCTCTGCGGCATGCG---..................................................................................................................................................................................................................................................................2413.0030000000030
..........................................................................................................................................................................................CACTATTCTGTTCCTCTGCGGCATGCG---A.................................................................................................................................................................................................................................................................2813.0030000000120
.............................................................................................................................................................................................TATTCTGTTCCTCTGCGGCATGCG---AT................................................................................................................................................................................................................................................................2612.0020000000110
...................................................................................................................................................................................................GTTCCTCTGCGGCATGCG---ATATTTC...........................................................................................................................................................................................................................................................2512.0020000000200
.............................................................................................................................................................................................TATTCTGTTCCTCTGCGGCATGCG---ATAT..............................................................................................................................................................................................................................................................2812.0020000000020
...........................................................................................................................................................................................ACTATTCTGTTCCTCTGCGGCATGCG---A.................................................................................................................................................................................................................................................................2711.0010000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATC-----GGCATGCAATATCCAGAA..................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGGCTTTTCTACCACACTCTACA......2611.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................AATCACGAATCAC-------G-------A----------ACAG..................................................................................1911.0010010000000
...............................................................................................................................................................................................TTCTGTTCCTCTGCGGCATGCG---ATA...............................................................................................................................................................................................................................................................2511.0010000000100
...........................TCCT----TCCTTCCTTCCAAAC------------ACC-------------------------CCCCG...........................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.............................................................................................................................................................................................TATTCTGTTCCTCTGCGGCATGCG---ATA...............................................................................................................................................................................................................................................................2711.0010000000010
................................................................................................................................................................................................TCTGTTCCTCTGCGGCATGCG---..................................................................................................................................................................................................................................................................2111.0010000000100
............................................................................................................................................................................................CTATTCTGTTCCTCTGCGGCATGCG---A.................................................................................................................................................................................................................................................................2611.0010000000010
...................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATAGAGAATC-----GGCATGCAAT..........................................2411.0010100000000
...............................................................................................................................................................................................TTCTGTTCCTCTGCGGCATGCG---ATAAA.............................................................................................................................................................................................................................................................2711.0010000000010
.........................................................................................................................................................................................ACACTATTCTGTTCCTCTGCGGC..........................................................................................................................................................................................................................................................................2311.0010000000010
droPer2
CTAAATTTTAATTTGTATTTCTTTCTTTCCT----TCCTTCCTTCCAA--------------ACA------------------------TCCCCGT--AACATC--AACTACTAACAATTGGAATGCT---TTAA------------------------CCCCAT--A---------------AAACACTATTCTGTTCCTCTGCGGCATGCG---GTATTTCTACAAAA----AACTGATTTAAAA--TAC-------------------TGACCAA------------------------------------------------------------------AAATCAATCACGAATCAC-------G-------A----------ACAGTATACAAGCAAGCAAATAGAGAATC-----GGCATGCAATATCCAGAAAATACTGGCTTTTCTACCACACTCTACATATAT-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGAATC-----GGCATGCAAT..........................................2111.001100000
.........................................................................................................................................................................................................................................................................................................................................................................C-------G-------A----------ACAGTATACAAGCAAGC.....................................................................2011.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGAGAATC-----GGCATG..............................................1820.501100000
droWil2
CATGCTTTA--TTTATC---TTTTTTTCTTT-CCCT-A----AA--------------ATACAAAAAACTTTCCCATCAATCTGAACTAACACAAC--AACAAC--AACAACAATAA-------------------------------------------------------------------------------------AATGGCATGCG---AATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATA-TA-------ATTATTGAAAT-AAA-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................TTTCCCATCAATCTGAACT..................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
................................................................................................................AATAA-------------------------------------------------------------------------------------AATGGCATGCG---AATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..............................2011.00100100

Generated: 05/18/2015 at 09:51 PM