ID:

dsi_5714

 Coordinate:

3r:4767929-4768078 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

five_prime_UTR [3r_4767499_4767928_+]; exon [3r_4767499_4767928_+]; intron [3r_4767929_4774733_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCAGAAAACTCAGATCACAAACGCCATCGACATCGCGATGATTTATGCAGGTGAGTCTGCTCAAGTTTATGACACTTTTCGAAGTTAAACTAATTGTAGATATTTTAAGTTTGCATATTTAATTCGAATATCTCAGTAAAACACTTATTTCAACTTCTAGAGGCAATACAAAAATGATATTTTAAAACCATTTGGTAATAAAACTATCATTACTCTGTTTAAAAATATATTCAGTAATAGACTTTTTACT
**************************************************.((((....))))...........(((((.((((((.((.(((.((((((((((((((((......)))))....)))))))).......))).))).)).)))))).)))))...(((..(((((............))))).)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 M024
male body
...............CACAAACGCCATCGACATCGCGATG.................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0
........................................................................................ACTACTGGTAGATATTTT................................................................................................................................................ 18 2 8 0.13 1 0 1 0
....................................................................................................................................................TTCAAATTCTAGAGG....................................................................................... 15 1 12 0.08 1 0 1 0
..........................................................GCTCGACTTTACGACACTTT............................................................................................................................................................................ 20 3 15 0.07 1 0 0 1

Anti-sense strand reads

GGTCTTTTGAGTCTAGTGTTTGCGGTAGCTGTAGCGCTACTAAATACGTCCACTCAGACGAGTTCAAATACTGTGAAAAGCTTCAATTTGATTAACATCTATAAAATTCAAACGTATAAATTAAGCTTATAGAGTCATTTTGTGAATAAAGTTGAAGATCTCCGTTATGTTTTTACTATAAAATTTTGGTAAACCATTATTTTGATAGTAATGAGACAAATTTTTATATAAGTCATTATCTGAAAAATGA
**************************************************.((((....))))...........(((((.((((((.((.(((.((((((((((((((((......)))))....)))))))).......))).))).)).)))))).)))))...(((..(((((............))))).)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 M023
head
.......................................................................TATGTAAAGCTTCAATTTG................................................................................................................................................................ 19 2 4 3.25 13 8 5 0 0 0 0 0
..................................................................................................................................AGAGTCATTTTGTGAATAAAGTTGAAGATC.......................................................................................... 30 0 1 1.00 1 0 0 1 0 0 0 0
.............................................................................................AACATCTATAGAAGTCAAACGT....................................................................................................................................... 22 2 2 0.50 1 0 0 0 1 0 0 0
.........................................................................TGTAAAGCTTCAATTTG................................................................................................................................................................ 17 1 2 0.50 1 0 1 0 0 0 0 0
.......................................................................TATGTAAAGCTTCAATTTGA............................................................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0
................................................................................................................................................................................................ACCATTATTTTAACAGGAATGA.................................... 22 3 2 0.50 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................CCATTATTTTGACAGGAATAA.................................... 21 3 3 0.33 1 0 0 0 0 1 0 0
.........................................................................TGTAAAGCTTCAATTTGG............................................................................................................................................................... 18 2 5 0.20 1 0 1 0 0 0 0 0
........................................................................................................................................................................................TTTGGTAAACCATTTT.................................................. 16 1 10 0.10 1 0 1 0 0 0 0 0
.........................................................................TGTAAAGCTTCAATTT................................................................................................................................................................. 16 1 12 0.08 1 0 1 0 0 0 0 0
.......................GCTAGCTGTAGCGCGAC.................................................................................................................................................................................................................. 17 2 18 0.06 1 0 0 0 0 0 1 0
......................................................CTGAAGAGTTCAGATACTG................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1
..................................................................................TCAATTTGATGAACAAGTAT.................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0
................................................................................................................................................................................................ACCATTATTTTAACAGGAAT...................................... 20 3 20 0.05 1 0 0 0 0 1 0 0

Generated: 04/24/2015 at 10:25 AM