ID:

dsi_571

 Coordinate:

3l:15988210-15988359 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-21.2 -21.1 -21.0

Flybase annnotation

five_prime_UTR [3l_15988209_15988209_-]; CDS [3l_15988043_15988208_-]; exon [3l_15988043_15988209_-]; intron [3l_15988210_15988912_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTACGGTACTATAATTTAAGCATTTCAATTTTCATGACACATTGGGAGCAAAGTTTGAGTGCTGGCCATATAATCAAATGTCGATATCGCGCGCTGGACATATTTATGAACTGCATTGCAGACATGACTTTCCACTTTCGATTACGTAAACGTTTCTCCAACGGACTGAATTAATTGAGTTGCGTCTATTTTTAGCCTAGGATGTCGCATCTACGGGGTTTGGGGCGACTGCTGATCGCCGTGACCTTCT
**************************************************.(((......)))(((.........((((((((..((((.....((((.....(((((..((((...)))).)))))...))))....))))..))...)))))).....(((((((.((....)).)))).))).........)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
..................................................................................................................................................................................................................................GACTGCTGATCGCCGTGACC.... 20 0 1 2.00 2 2 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CGCATCTACGGGGTTTGGGG......................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................ATCTACGGGGTTTGGGGCGACTGCTAAA.............. 28 2 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................................AGTTGCGTCTATTTTTAGCCTAGGA................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................ACGGGGTTTGGGGCGACTGCTGAGCGCCG......... 29 1 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................CGCATCTACGGGGTTTGGGGC........................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................CGATATCGCGCGCTGGAC....................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GACTGCTGATCGCCGTGACCTT.. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ATGTCGCATCTACGGGGTTTGG........................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................TCTACGGGGTTTGGGGCGA...................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................GTTTGGGGCGACTGCTGATCGC........... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GCATCTACGGGGTTTGGGGC........................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0
..........................................................................................................................................................TCTCCAACGGACTGAATTAATTGAGG...................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GGGGCGACTGCTGATCGC........... 18 0 1 1.00 1 0 0 0 0 1 0 0 0
............................................................................................................................TGAATTTGCACTTTCGATTTCGTA...................................................................................................... 24 3 2 0.50 1 0 0 0 0 0 1 0 0
....................................................................................................................................................................ACTGCATTAATTGCGTTGC................................................................... 19 2 5 0.20 1 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................CTACGGGGCTAGGGGTGA...................... 18 3 16 0.06 1 0 0 1 0 0 0 0 0
..............................................AGCAATGTCTGCGTGCTGG......................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

AATGCCATGATATTAAATTCGTAAAGTTAAAAGTACTGTGTAACCCTCGTTTCAAACTCACGACCGGTATATTAGTTTACAGCTATAGCGCGCGACCTGTATAAATACTTGACGTAACGTCTGTACTGAAAGGTGAAAGCTAATGCATTTGCAAAGAGGTTGCCTGACTTAATTAACTCAACGCAGATAAAAATCGGATCCTACAGCGTAGATGCCCCAAACCCCGCTGACGACTAGCGGCACTGGAAGA
**************************************************.(((......)))(((.........((((((((..((((.....((((.....(((((..((((...)))).)))))...))))....))))..))...)))))).....(((((((.((....)).)))).))).........)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
......................................................................................................................................................................................................................................CGATTAGCGGGACTGGAAGA 20 2 1 1.00 1 1 0 0 0 0
....................................................................................................................................................TTGCAAAGAGGTTGCCTGACTTAAT............................................................................. 25 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................TCAACGCAGATAAATATC....................................................... 18 1 1 1.00 1 0 1 0 0 0
............................................................................................................................................................................................AAAAATCGGATGCTAGAGC........................................... 19 2 2 0.50 1 0 0 1 0 0
........................................................................................................................CTGTATTGAAAGGTGA.................................................................................................................. 16 1 4 0.25 1 1 0 0 0 0
.........................................................................................................................................................................................................................................AGAGCGGCACTGGAAGA 17 2 8 0.25 2 0 2 0 0 0
.................................................................................................................................................................................TCAACGCAGATAAATA......................................................... 16 1 6 0.17 1 0 1 0 0 0
................................................................................................................................ACAGGTGCAAGTTAATGCAT...................................................................................................... 20 3 7 0.14 1 0 0 0 1 0
......................................................................................................................................................................................................................................CGATTAGCGGGACTGGAAAA 20 3 7 0.14 1 1 0 0 0 0
................................................................CGGTATATTAGTGTA........................................................................................................................................................................... 15 1 19 0.05 1 0 0 0 0 1
....CCATGATATTAAAGTGGC.................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0 0

Generated: 04/24/2015 at 12:28 AM