dsi_5704

exon [2r_3888081_3888967_-]; CDS [2r_3888081_3888967_-]; exon [2r_3887746_3887890_-]; CDS [2r_3887746_3887890_-]; intron [2r_3887891_3888080_-]

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CCAAGTTTAGCGTCACCTTTGGCTTGGGTTTGGAGGGACCATTCAAGAAGGTGAGTAGGAAACGATTTGAGCGAATTATCAAGTGGTTGCGAATAATAATGAGTTATTAAAAAAAGGTTTCTCAAAGAGTCAGTTGATAAATTGTGATTGCATTTTTGCACATACTCTGCAACACCTATTTAAAAAACTATTGACTATTAACGATAATGTTTCATCAACACTTTGACTTTCGTCAACTAGCTGGGTGTCCACACGATGTTCTCGAGGGACGGTGACTTTGGCAACATGTA ************************************************.((((((((.(((.((((((........)))))).)))...........((((..(((.......)))..)))).((((((((((....)))))....((((....))))...)))))......))))))))..(((((((((........)))))..))))..........(((((....)))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M025 embryo	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	GSM343915 embryo	M053 female body
.................................................................................................................................................................................................................................ACTTTCGTCAACTAGCTGGGT............................................	21	0	1	2.00	2	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TCGAGGGACGGTGACTTTGGCAAC.....	24	0	1	2.00	2	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................GTCCACACGATGTTCTCGAGG.......................	21	0	1	2.00	2	0	2	0	0	0	0	0	0	0
..........................................................................................................................................AAATTGTGATTGTATGTTAGCAC.................................................................................................................................	23	3	1	1.00	1	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................ACTTTCGTCAACTAGCTGGGG............................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TGTCCACACAATGTTCTCGAGGGA.....................	24	1	1	1.00	1	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................GGGACGGTGACTTTGGCAACA....	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.................TTTGGCTTGGGTTTGGAGGGACC..........................................................................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TCGAGGGACGGTGACTTTGGCAACAT...	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................ATTTTTGCACATACTCTG.........................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................ACTTTCGTCAACTAGCTGGGC............................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0
.................TTTGGCTTGGGTTTGGAG...............................................................................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................TTCTCGATGGACGGTGACTTTGGCAACA....	28	1	1	1.00	1	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................AGGGACGGTGACTTTGGCA.......	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................GGGACGGTGACTTTGGCA.......	18	0	1	1.00	1	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................TATTCTCGACTGACGGTGACT.............	21	3	1	1.00	1	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TCGAGGGACGGTGACTTTGGCAACATT..	27	1	1	1.00	1	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................ATATAAAAAAGTATTGACTA.............................................................................................	20	2	6	0.17	1	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................GAGTATTAACGATTATGT................................................................................	18	2	7	0.14	1	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................GGGTGTTGACACCATGTTCT............................	20	3	9	0.11	1	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................TGCTCTCGAGGGTCGGT.................	17	2	12	0.08	1	0	0	1	0	0	0	0	0	0
................................................................................................TAATGAGTTCGTAAAAAA................................................................................................................................................................................	18	2	20	0.05	1	0	0	1	0	0	0	0	0	0
...............................................................................................ATAATGAATTATTAAAAAAT...............................................................................................................................................................................	20	2	20	0.05	1	0	0	0	0	0	0	0	0	1

GGTTCAAATCGCAGTGGAAACCGAACCCAAACCTCCCTGGTAAGTTCTTCCACTCATCCTTTGCTAAACTCGCTTAATAGTTCACCAACGCTTATTATTACTCAATAATTTTTTTCCAAAGAGTTTCTCAGTCAACTATTTAACACTAACGTAAAAACGTGTATGAGACGTTGTGGATAAATTTTTTGATAACTGATAATTGCTATTACAAAGTAGTTGTGAAACTGAAAGCAGTTGATCGACCCACAGGTGTGCTACAAGAGCTCCCTGCCACTGAAACCGTTGTACAT ************************************************.((((((((.(((.((((((........)))))).)))...........((((..(((.......)))..)))).((((((((((....)))))....((((....))))...)))))......))))))))..(((((((((........)))))..))))..........(((((....)))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	O001 Testis	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
...................................................................................................................................................................................................................................................CCACAGGTGTGCTACGAGAGC..........................	21	1	1	1.00	1	1	0	0	0	0	0
..............................................CTTCCACTCATCCTTTGC..................................................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0
.........................................................CCTTTGCTAAACTCGCC........................................................................................................................................................................................................................	17	1	2	0.50	1	0	0	1	0	0	0
...............................................................................................................................................................................................................ACAACCTAGTTGTAAAACTGAAA............................................................	23	3	3	0.33	1	0	0	0	1	0	0
.....................................TGGCAAGTTCTTCCATTC...........................................................................................................................................................................................................................................	18	2	4	0.25	1	0	0	0	0	1	0
.......................................................AGCCTTTGCTAAACTC...........................................................................................................................................................................................................................	16	1	6	0.17	1	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................CCAGGTGTGCTCCAAG.............................	16	2	19	0.05	1	0	0	1	0	0	0
.............................................................................................................................................................................TGGATCGATTTTTTGAT....................................................................................................	17	2	20	0.05	1	0	0	0	0	0	1
...............................CTTCCCTGGTATGTTC...................................................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	1
...............................................................................................................................................................CGTATGAGACGTTGTAG..................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2r:3887841-3888130 -	dsi_5704	CCAAGTTTAGCGTCACCTTTGGCTTGGGTTTGGAGGGACCATTCAAGAAGGTGAGTAGGAAACGATT------------------------------------------------------------TGAGCG--A------------------ATTATCAAGTG----GT----------------------TGCGA----------------------------------------ATA--A----TAAT---------------------------------------------------------------------------------------------GAGTTATTAAAAAAAGGTTTCTCAAA------------------------------------------------------------------------------------------------------------------------------------------GAGTCAGTTGATAAATTGTGATTGCATTTTTGCACATACTCTGCAACACCTATTTAAAAAACTATTGACTA----------------------------------TTAACGATAATGTTTCAT-CA-----------------------AC-ACTTT---GACTTTCGTCAACTAGCTGGGTGTCCACACGATGTTCTCGAGGGACGGTGACTTTGGCAACATGTA
droSec2	scaffold_1:707329-707616 -		CCAAGTTTAGCGTCACCTTTGGCTTGGGTTTGGAGGGACCATTCAAGAAGGTAAGTAGGAATCGATT------------------------------------------------------------TGAGCG--A------------------ATTATCAAGTG----GT----------------------TGCGA--------------------------------------------GA----TAAT---------------------------------------------------------------------------------------------GAGATAAT-AAGAAAGGTTTCTCCAT------------------------------------------------------------------------------------------------------------------------------------------GATCCAGTTGATAAATTGTGTTTGCATTCTTGCACAGCCTCTGCAACACCTATTTAAAAAACTATTGACTA----------------------------------TTAACAATAATGTTTCATCTA-----------------------AC-ACTTT---AACTTTCGTCAACTAGCTGGGTGTCCACACAATGTTCTCGAGGGACGGTGACTTTGGCAACATGTA
dm3	chr2R:3039519-3039812 -		CCAAGTTTAGTGTCACCTTTGGCTTGGGTTTGGAGGGACCATTCAAGAAGGTAAGTAGGAATCGATT------------------------------------------------------------TGAGCG--A------------------ATTTTCAAGTG----GT----------------------TACGATATTGT-----AA----------TAATATTTCTT-------------------T---------------------------------------------------------------------------------------------G-GATTAT-GAGAAAGGTTT-----------------------------------------------------------------------------------------------------------------------------------------TTTTCATAAGTCAGTTGATAAATTCTGATTGCATTTTTACATTT---T-----TACATTTTTAAAAGACTATCAACTA----------------------------------TTTATGATGATGTTTAATCTA-----------------------AC-ACTTT---AACTTTCGTCAACTAGCTGGGCGTCCATACAATGTTCTCGAGAGATGGTGACTTTGGCAACATGTA
droEre2	scaffold_4929:19529424-19529621 +		CCAAGTTTAGCGTCACCTTTGGCTTGGGCTTGGAGGGACCATTCAAGAAGGTGAGAAGGAATCGATT------------------------------------------------------------AAAGCG--A------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACACTCGATGAATTGTGATT-----------------------------CTTTGA--------------------------AG-------------------ACTATCATATTCTT-AAACTA-----------------------AC-TCTTC---AACTTTCGTCAACTAGCTGGGTGTCCACACAATGTTCTCGAGGGATGGAGACTTTGGCAACATGTA
droYak3	2L:15748193-15748388 -		CCAAGTTTAGCGTCACATTTGGCTTGGGTTTGGAGGCACCATTCAAGAAGGTGAGTAGGAATCCATT------------------------------------------------------------TGAGTG--A------------------ATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTTAGCTTTATATAAGTAAAGAGTGATTGCAA------------------CACTTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAA-----------------------AC-ACTTT---GACTTTCGTCAACTAGCTGGGTGTGCACACAATGTTCTCGAGGGATGGCGACTTTGGCAACATGTA
droEug1	scf7180000409672:5064270-5064593 -		CCAAGTTCAGCGTTACCTTTGGCGTGGGTCTGGAGGGACCGTTCAAGAAGGTGAGTAGATCTTC---TGT--CTGAGTTGCTTCTAAGAAATATTTCTCAATCTGCCACACCTTTCA-TGCAACGATTAAGCG--A------------------G--------------GT-------------------TTCTATGACATTGATCACCAATCAATTTATTTAGCACTTGATTGACAAATGGAAAGGC-------------------------------------------------------------------------------------------------CATTAAAA-GACAGAAGCTT-----------------------------------------------------------------------------------------------CCTTTTACAAATAACTATTAAAGAGT-TTATC----------------------------------------------------------------------------------------------------------------------------------------------------------TGAGCAGTTAAACT---AATATTAAC-CTATAAATTTAGTTGGGCGTCCACACGATGTTCTCGAGGGACGGCGACTTCGGCAACATGTA
droBia1	scf7180000302292:3098250-3098558 -		CCAAGTTCAAGTTCGAGTTCGACACCGACCTCCGACCCACGCTGAACAAGGTGAGCGGGGTCTC---TATAATGATATTCCAA-GGGAAGATAAGATCTAA--------------GA-GGGTAC-------------G---------ATTTGGGAG-----CCAAAGACT------------------------------------------------A-TTAGGAATT-------GAATTTAGAAGC-------------------------------------CATTAAG----------------------------------------------------------AGG-GAGAGTGGTCT-----------------------------------------------------------------------------------------------------------------------------------------CCC---------------------------------------------------TTCTAACTTAAAGATTTTTGAATT----------------------------------TTAACTATA-TGTTTTAT-GGAAATTGGTTTGCTAATAGAATTCTC-CCCTT---ACCCCCTATTTTTCAGATGGGAATCAGTGCCATGTTCTCGGATGCCGCCGACTTCAGCAACATTTT
droTak1	scf7180000415382:292719-292981 -		CCAAGTTTAGTGTCACCTTTGGCGTGGGTTTGGAGGGACCGTTCAAGAAGGTGAGCAGAAATCGGT----GA-------------------------------------------------------TA----GTTTTGGATTGAAT----CGAAA-----GTTAACAGATTCCAGATATTGCTAAAGCTTTCTGTCACCTTAACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAA----------------------------------------------------------------------------------------------------T---CA-----------------------------------A----------------------------------------------TTCTATTCTTGCTTCTTAAGT-TATCCTAAAAT--CTTTGTTTAATTC---------------CA-----------------A-----CATATTTA---AA--TTCTTATTTTAGTTGGGCGTTCACACAATGTTCTCGAGGGACGGCGACTTTGGCAACATGTA
droEle1	scf7180000491265:176886-176973 -		TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACAATATTGTTT--------------------------------ATTTA---AATTGCTCTCAATTAGTTGGGCGTCCACACCATGTTCTCGAGGGACGGCGACTTCAGCAACATGTA
droRho1	scf7180000780072:72600-72699 +		CCAAGTTTAGCGTCACTTTTGGAGTGGGCTTGGAGGGACCTTTCAAGAAGGTGAGTACGACTCGATC------------------------------------------------------------TGG----TATAGTGCCTAAT----CGAAATATCAGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACT-------------
droFic1	scf7180000453955:222046-222447 -		CCAAGTTCAAGTTCGAGTTCGACACGGATCTCCGGCCCACGCTGAACAAGGTGAGGGGACTACC---CAT--TGGCATTTCATTTGGGAGATAACATCTGA--------------AATGGGTCT-------------G-------------------------------------------------------------------------------------------------------------------TCTGAAATTAAATATTCAGATTGTAAAACAGTTTTGGGGGAACC--------GTTTCCCAGACCTTTCGTTAATGATTCACAAGCAGAAAGCATTTGTAT------------------CAACGTGGTAAACATTTTTTTGATTCAATTTTAAAGTAGGATCATAGGAAGATAGATAAAGTTTGGAACATAATCTTCCCTACAGCCATCCATATTTAAATATCTTGCATGGAAT-TTCTC----------------------------------------------------------------------------------------------------------------------------------------------------------CTAGTAGATTTTTT--TACT---ATCTTTCCTTCCTTAGATGGGAATCAGTGCCATGTTCTCGGATGCCGCCGACTTCAGCAACATTTT
droKik1	scf7180000302640:155004-155270 -		CCAAGTTTAGCGTGACCTTCGGCGTGGGATTGGAGGGTGCCTTTAAGCAGGTGGGTGATATATGTTT------------------------------------------------------------TT-----------------------------CTTTGCG----GT----------------------TTCTA----------------------------------------CTA--C----CACTAAAATATATTAAATGTCAACTTGCTGATGTTGTTTTCAGGGTAATTTGACAATCTTTTTTATATTAATTCTTAATGATTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAAATAAT---------------------------------TGTTGTGTCATTAA-----T----TGC---ATTTTTTATTCAATAGTTGGGCGTCCACACAATGTTCTCGAGAGATGGCGACTTTGGCAACATGTA
droAna3	scaffold_13266:3275261-3275494 +		CTAAGTTCAAGTTTGAGTTCGACACGGATCTCCGACCCACACTCCACAAGGTGAATAGGAATATATT------------------------------------------------------------AAATCT--G------------------CTTAACTAGCA----T---------------------------------------------------------GTTTTATGCAAATG----------------------------------------------------------------A-----------------------------------------T----------------TCTTA-ACATTTTCCTAA----------------------------------------------------------------------------------------------------TGAATACG---------TATCTC---------------------------------------------------------TCA--------------------------TATC-------------------ACTACCATTTCCAT-AAATAA-----------------------ACTACTTA---AACTTTCTTTCTACAGCTTGGCATAAGTGCCATGTTCTCGGATGCGGCCGACTTCAGTAATATTTT
droBip1	scf7180000396427:1741982-1742247 +		CCAAGTTCAAGTTTGAGTTCGACACGGATCTCCGCCCCACCCTCCACAAGGTGAATAAGAATATATT------------------------------------------------------------TAAATAG-G------------------CTTAACTAGCT----T---------------------------------------------------------GTATTATGCAAATGAGA----AGAT---------------------------------------------------------------------------------------------GATCCCAA-AGGTTAAGCTTCTCAAACATTTCCCTAA----------------------------------------------------------------------------------------------------TGAA-ACATCCCAGCGATATCTC---------------------------------------------------------TAA--------------------------TCTC-------------------CCAACCATTTCCAT-AAATAA-----------------------AC-TCCTT---AACTTTCTTTCTACAGCTGGGCATAAGCGCCATGTTCTCGGATGCGGCCGACTTCAGTAACATTTT
dp5	3:1329218-1329269 -		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGGGTGTCCACACCATGTTCTCCCGCGACGGGGACTTCAGCAACATGTA
droPer2	scaffold_2:1499793-1499875 +		CATCC--TCATCTCAATTTTG-TTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTTCGAAGATGGGCATCAGCGCCATGTTCTCGGATTCGGCTGACTTTAGCAACATCTT
droWil2	scf2_1100000004513:2644511-2644564 -		C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTGGGTGTGACCACAATGTTCTCCAGAAATGGTGACTTTGGCAACATGTA
droVir3	scaffold_10324:1211543-1211723 -		CCAAGTTCAGTGTGACCTTTGGCGTCAGCCTGGAGCAGCCCTTCAAGCAGGTGAGAGA---TTGAG----GA-------------------------------------------------------GA----AAACTGAACTAGATATTTGGAAA-----CCTAAGACAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAT----CTA-----------------------TC-GTATA--TATTTTCTATTGTCCAGCTGGGCATTACGACCATGTTCTCGCGCAACGGCGACTTTGGTAACATGTA
droMoj3	scaffold_6496:4832860-4832921 +		T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTATCTAGCTGGGCGTTACGACCATGTTCTCCCGCGAGGGAGACTTTGGTAATATGTA
droGri2	scaffold_15245:9293791-9294040 -		CCAAGTTTAGTGTGACGTTTGGCGTTAGCCTCGAGCAACCCTTCAAGCAGGTAATATGTGTACT-TTTCTAATA-----------------------------------------------------------G-T------------------TTT---------------------------------------------------------------------------------------------------------------CAATTTAGAGTAATTGTTTTGAAGAAACG--------C-----------------------------------------TTTCAA-TTGCTATTCT-------------GCTAA----------------------------------------------------------------------------------------------------A---GA-----------------------------------A----------------------------------------------CTTTTTTTTTGTGTTT-ATGACTTGCATAAAAT--T---------------------------------TTTTTTATTAATAA-----GC----CC---CGGTTCTATTATGCAGCTTGGAGTTACGACCATGTTCTCGCGTGCCGGCGACTTTGGCAACATGTA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CCAAGTTTAGCGTCACCTTTGGCTTGGGTTTGGAGGGACCATTCAAGAAGGTGAGTAGGAAACGATT------------------------------------------------------------TGAGCG--A------------------ATTATCAAGTG----GT----------------------TGCGA----------------------------------------ATA--A----TAAT---------------------------------------------------------------------------------------------GAGTTATTAAAAAAAGGTTTCTCAAA------------------------------------------------------------------------------------------------------------------------------------------GAGTCAGTTGATAAATTGTGATTGCATTTTTGCACATACTCTGCAACACCTATTTAAAAAACTATTGACTA----------------------------------TTAACGATAATGTTTCAT-CA-----------------------AC-ACTTT---GACTTTCGTCAACTAGCTGGGTGTCCACACGATGTTCTCGAGGGACGGTGACTTTGGCAACATGTA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTCGTCAACTAGCTGGGT............................................	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGGGACGGTGACTTTGGCAAC.....	24	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCACACGATGTTCTCGAGG.......................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTCGTCAACTAGCTGGGG............................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGACGGTGACTTTGGCAACA....	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TTTGGCTTGGGTTTGGAGGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGGGACGGTGACTTTGGCAACAT...	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGCACATACTCTG.......................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTCGTCAACTAGCTGGGC............................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TTTGGCTTGGGTTTGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGACGGTGACTTTGGCA.......	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGACGGTGACTTTGGCA.......	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGGGACGGTGACTTTGGCAACATT..	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CCAAGTTTAGCGTCACCTTTGGCTTGGGTTTGGAGGGACCATTCAAGAAGGTAAGTAGGAATCGATT------------------------------------------------------------TGAGCG--A------------------ATTATCAAGTG----GT----------------------TGCGA--------------------------------------------GA----TAAT---------------------------------------------------------------------------------------------GAGATAAT-AAGAAAGGTTTCTCCAT------------------------------------------------------------------------------------------------------------------------------------------GATCCAGTTGATAAATTGTGTTTGCATTCTTGCACAGCCTCTGCAACACCTATTTAAAAAACTATTGACTA----------------------------------TTAACAATAATGTTTCATCTA-----------------------AC-ACTTT---AACTTTCGTCAACTAGCTGGGTGTCCACACAATGTTCTCGAGGGACGGTGACTTTGGCAACATGTA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................TTGGCTTGGGTTTGGAGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGGGACGGTGACTTTGGCAACAT...	26	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAGGGACGGTGACTTTGGCAAC.....	25	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGAGGGACGGTGAC..............	18	1	1.00	1	0	0	1	0

dm3

CCAAGTTTAGTGTCACCTTTGGCTTGGGTTTGGAGGGACCATTCAAGAAGGTAAGTAGGAATCGATT------------------------------------------------------------TGAGCG--A------------------ATTTTCAAGTG----GT----------------------TACGATATTGT-----AA----------TAATATTTCTT-------------------T---------------------------------------------------------------------------------------------G-GATTAT-GAGAAAGGTTT-----------------------------------------------------------------------------------------------------------------------------------------TTTTCATAAGTCAGTTGATAAATTCTGATTGCATTTTTACATTT---T-----TACATTTTTAAAAGACTATCAACTA----------------------------------TTTATGATGATGTTTAATCTA-----------------------AC-ACTTT---AACTTTCGTCAACTAGCTGGGCGTCCATACAATGTTCTCGAGAGATGGTGACTTTGGCAACATGTA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----------------------AC-ACTTT---AACTTTCGTCAACTAGC.................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GTGTCACCTTTGGCTTGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TTTAGTGTCACCTTTGGCTTGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0
.....................GCTTGGGTTTGGAGGGACCATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............ACCTTTGGCTTGGGTTTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCTCGAGAGATGGTGACTTTGGC........	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATACAATGTTCTCGAGAGAT....................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGGTGACTTTGGCAACA....	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TTGGCTTGGGTTTGGAGGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TAATATTTCTT-------------------T---------------------------------------------------------------------------------------------G-GATTAT-GAG..........................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTCTCGAGAGATGG..................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGTTCTCGAGAGATG...................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................TAAGTAGGAATCGATT------------------------------------------------------------TGAGCG--A------------------ATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AGGGACCATTCAAGAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTA-----------------------AC-ACTTT---AACTTTCTA.........................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAATTCTGATTGCATGA.....................................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CCAAGTTTAGCGTCACCTTTGGCTTGGGCTTGGAGGGACCATTCAAGAAGGTGAGAAGGAATCGATT------------------------------------------------------------AAAGCG--A------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACACTCGATGAATTGTGATT-----------------------------CTTTGA--------------------------AG-------------------ACTATCATATTCTT-AAACTA-----------------------AC-TCTTC---AACTTTCGTCAACTAGCTGGGTGTCCACACAATGTTCTCGAGGGATGGAGACTTTGGCAACATGTA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTGTCCACACAATGTTCTCGA.........................	24	1	2.00	2	2	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCTCGAGGGATGGAGACTT............	23	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGACTTTGGCAACAT...	19	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGACTTTGGCAACA....	18	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTGGGTGTCCACACAATGTTCT............................	25	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCTCGAGGGATGGAG................	19	1	1.00	1	0	0	0	0	0	1	0
......TTAGCGTCACCTTTGGCTTGGGCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAATGTTCTCGAGGGATG...................	21	1	1.00	1	1	0	0	0	0	0	0
................................GAGGGACCATTCAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCTCGAGGGATGGAGA...............	20	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCTCGAGGGATGGAG................	18	1	1.00	1	0	0	0	0	1	0	0

droYak3

CCAAGTTTAGCGTCACATTTGGCTTGGGTTTGGAGGCACCATTCAAGAAGGTGAGTAGGAATCCATT------------------------------------------------------------TGAGTG--A------------------ATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTTAGCTTTATATAAGTAAAGAGTGATTGCAA------------------CACTTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAA-----------------------AC-ACTTT---GACTTTCGTCAACTAGCTGGGTGTGCACACAATGTTCTCGAGGGATGGCGACTTTGGCAACATGTA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAATGTTCTCGAGGGATGGC.................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGTTCTCGAGGGATGG..................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAATGTTCTCGAGGGAT....................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................TTGGCTTGGGTTTGGAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTGTGCACACAATGTTCTCG..........................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGTTCTCGAGGGATGGCGA...............	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCGAGGGATGGCGACT.............	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCTCGAGGGATGGCGA...............	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTCTCGAGGGATGGC.................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAATGTTCTCGAGGGATG...................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

CCAAGTTCAGCGTTACCTTTGGCGTGGGTCTGGAGGGACCGTTCAAGAAGGTGAGTAGATCTTC---TGT--CTGAGTTGCTTCTAAGAAATATTTCTCAATCTGCCACACCTTTCA-TGCAACGATTAAGCG--A------------------G--------------GT-------------------TTCTATGACATTGATCACCAATCAATTTATTTAGCACTTGATTGACAAATGGAAAGGC-------------------------------------------------------------------------------------------------CATTAAAA-GACAGAAGCTT-----------------------------------------------------------------------------------------------CCTTTTACAAATAACTATTAAAGAGT-TTATC----------------------------------------------------------------------------------------------------------------------------------------------------------TGAGCAGTTAAACT---AATATTAAC-CTATAAATTTAGTTGGGCGTCCACACGATGTTCTCGAGGGACGGCGACTTCGGCAACATGTA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CCAAGTTCAAGTTCGAGTTCGACACCGACCTCCGACCCACGCTGAACAAGGTGAGCGGGGTCTC---TATAATGATATTCCAA-GGGAAGATAAGATCTAA--------------GA-GGGTAC-------------G---------ATTTGGGAG-----CCAAAGACT------------------------------------------------A-TTAGGAATT-------GAATTTAGAAGC-------------------------------------CATTAAG----------------------------------------------------------AGG-GAGAGTGGTCT-----------------------------------------------------------------------------------------------------------------------------------------CCC---------------------------------------------------TTCTAACTTAAAGATTTTTGAATT----------------------------------TTAACTATA-TGTTTTAT-GGAAATTGGTTTGCTAATAGAATTCTC-CCCTT---ACCCCCTATTTTTCAGATGGGAATCAGTGCCATGTTCTCGGATGCCGCCGACTTCAGCAACATTTT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCAAGTTTAGTGTCACCTTTGGCGTGGGTTTGGAGGGACCGTTCAAGAAGGTGAGCAGAAATCGGT----GA-------------------------------------------------------TA----GTTTTGGATTGAAT----CGAAA-----GTTAACAGATTCCAGATATTGCTAAAGCTTTCTGTCACCTTAACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAA----------------------------------------------------------------------------------------------------T---CA-----------------------------------A----------------------------------------------TTCTATTCTTGCTTCTTAAGT-TATCCTAAAAT--CTTTGTTTAATTC---------------CA-----------------A-----CATATTTA---AA--TTCTTATTTTAGTTGGGCGTTCACACAATGTTCTCGAGGGACGGCGACTTTGGCAACATGTA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACAATATTGTTT--------------------------------ATTTA---AATTGCTCTCAATTAGTTGGGCGTCCACACCATGTTCTCGAGGGACGGCGACTTCAGCAACATGTA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCAAGTTTAGCGTCACTTTTGGAGTGGGCTTGGAGGGACCTTTCAAGAAGGTGAGTACGACTCGATC------------------------------------------------------------TGG----TATAGTGCCTAAT----CGAAATATCAGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACT-------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCAAGTTCAAGTTCGAGTTCGACACGGATCTCCGGCCCACGCTGAACAAGGTGAGGGGACTACC---CAT--TGGCATTTCATTTGGGAGATAACATCTGA--------------AATGGGTCT-------------G-------------------------------------------------------------------------------------------------------------------TCTGAAATTAAATATTCAGATTGTAAAACAGTTTTGGGGGAACC--------GTTTCCCAGACCTTTCGTTAATGATTCACAAGCAGAAAGCATTTGTAT------------------CAACGTGGTAAACATTTTTTTGATTCAATTTTAAAGTAGGATCATAGGAAGATAGATAAAGTTTGGAACATAATCTTCCCTACAGCCATCCATATTTAAATATCTTGCATGGAAT-TTCTC----------------------------------------------------------------------------------------------------------------------------------------------------------CTAGTAGATTTTTT--TACT---ATCTTTCCTTCCTTAGATGGGAATCAGTGCCATGTTCTCGGATGCCGCCGACTTCAGCAACATTTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CCAAGTTTAGCGTGACCTTCGGCGTGGGATTGGAGGGTGCCTTTAAGCAGGTGGGTGATATATGTTT------------------------------------------------------------TT-----------------------------CTTTGCG----GT----------------------TTCTA----------------------------------------CTA--C----CACTAAAATATATTAAATGTCAACTTGCTGATGTTGTTTTCAGGGTAATTTGACAATCTTTTTTATATTAATTCTTAATGATTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAAATAAT---------------------------------TGTTGTGTCATTAA-----T----TGC---ATTTTTTATTCAATAGTTGGGCGTCCACACAATGTTCTCGAGAGATGGCGACTTTGGCAACATGTA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CTAAGTTCAAGTTTGAGTTCGACACGGATCTCCGACCCACACTCCACAAGGTGAATAGGAATATATT------------------------------------------------------------AAATCT--G------------------CTTAACTAGCA----T---------------------------------------------------------GTTTTATGCAAATG----------------------------------------------------------------A-----------------------------------------T----------------TCTTA-ACATTTTCCTAA----------------------------------------------------------------------------------------------------TGAATACG---------TATCTC---------------------------------------------------------TCA--------------------------TATC-------------------ACTACCATTTCCAT-AAATAA-----------------------ACTACTTA---AACTTTCTTTCTACAGCTTGGCATAAGTGCCATGTTCTCGGATGCGGCCGACTTCAGTAATATTTT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGATGCGGCCGACTTCA..........	20	1	1.00	1	1	0	0	0	0	0

droBip1

CCAAGTTCAAGTTTGAGTTCGACACGGATCTCCGCCCCACCCTCCACAAGGTGAATAAGAATATATT------------------------------------------------------------TAAATAG-G------------------CTTAACTAGCT----T---------------------------------------------------------GTATTATGCAAATGAGA----AGAT---------------------------------------------------------------------------------------------GATCCCAA-AGGTTAAGCTTCTCAAACATTTCCCTAA----------------------------------------------------------------------------------------------------TGAA-ACATCCCAGCGATATCTC---------------------------------------------------------TAA--------------------------TCTC-------------------CCAACCATTTCCAT-AAATAA-----------------------AC-TCCTT---AACTTTCTTTCTACAGCTGGGCATAAGCGCCATGTTCTCGGATGCGGCCGACTTCAGTAACATTTT	Size	Hit Count	Total Norm	Total
No Reads

dp5

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGGGTGTCCACACCATGTTCTCCCGCGACGGGGACTTCAGCAACATGTA

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

CATCC--TCATCTCAATTTTG-TTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTTCGAAGATGGGCATCAGCGCCATGTTCTCGGATTCGGCTGACTTTAGCAACATCTT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCTCGGATTCGGCT.................	18	1	1.00	1	1	0	0	0	0	0

droWil2

C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTGGGTGTGACCACAATGTTCTCCAGAAATGGTGACTTTGGCAACATGTA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAATGGTGACTTTGGCAAC.....	23	1	1.00	1	1	0	0	0	0

droVir3

CCAAGTTCAGTGTGACCTTTGGCGTCAGCCTGGAGCAGCCCTTCAAGCAGGTGAGAGA---TTGAG----GA-------------------------------------------------------GA----AAACTGAACTAGATATTTGGAAA-----CCTAAGACAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAT----CTA-----------------------TC-GTATA--TATTTTCTATTGTCCAGCTGGGCATTACGACCATGTTCTCGCGCAACGGCGACTTTGGTAACATGTA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......CAGTGTGACCTTTGGCGTCAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TTTGGCGTCAGCCTGGAGCAGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ACCTTTGGCGTCAGCCTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCATGTTCTCGCGCAACGGCGACT.............	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGGCATTACGACCATGTTCT............................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGACCATGTTCTCGCGCAAC....................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGTTCTCGCGCAACGGC.................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CAGTGTGACCTTTGGCGTCAGCCTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GTTCAGTGTGACCTTTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GTGTGACCTTTGGCGTCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GACCTTTGGCGTCAGCCTGGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTTCTCGCGCAACGGC.................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CTTTGGCGTCAGCCTGGAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............CCTTTGGCGTCAGCCTGGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTATCTAGCTGGGCGTTACGACCATGTTCTCCCGCGAGGGAGACTTTGGTAATATGTA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

CCAAGTTTAGTGTGACGTTTGGCGTTAGCCTCGAGCAACCCTTCAAGCAGGTAATATGTGTACT-TTTCTAATA-----------------------------------------------------------G-T------------------TTT---------------------------------------------------------------------------------------------------------------CAATTTAGAGTAATTGTTTTGAAGAAACG--------C-----------------------------------------TTTCAA-TTGCTATTCT-------------GCTAA----------------------------------------------------------------------------------------------------A---GA-----------------------------------A----------------------------------------------CTTTTTTTTTGTGTTT-ATGACTTGCATAAAAT--T---------------------------------TTTTTTATTAATAA-----GC----CC---CGGTTCTATTATGCAGCTTGGAGTTACGACCATGTTCTCGCGTGCCGGCGACTTTGGCAACATGTA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.......TAGTGTGACGTTTGGCGTTAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCGTGCCGGCGACTTTG..........	20	1	1.00	1	1	0
........AGTGTGACGTTTGGCGTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1

dsi_5704

2r:3887891-3888080 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-31.5	-31.4	-31.4