ID:dsi_5688 |
Coordinate:3r:10720072-10720185 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
CDS [3r_10719706_10720071_-]; exon [3r_10719634_10720071_-]; CDS [3r_10720186_10720878_-]; exon [3r_10720186_10721024_-]; intron [3r_10720072_10720185_-]
No Repeatable elements found
| ##################################################------------------------------------------------------------------------------------------------------------------################################################## AGATTGCTAAGGAAAAATCCAGTAAACCAACGGAGCGGAAAACAAAGCAAGTACGTGGTTTATTCTAATCTAGAATCTGTTTAAAGTAAATTCAATAGATTTTATAAGAATTAGCTACCTTGATTTATCATATAAATGGTAGTAAAACCAATATTTACATACAGGCTGGAAAAAAGAAGAAGCCCGAGGATGGATCCAAAAATAATCCGCCGGC **************************************************.....(((((((((((....(((((((((((.((......)).)))))))))))..)))))..((((((...((((((...)))))))))))).))))))..............************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR902008 ovaries |
SRR553486 Makindu_3 day-old ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
|---|---|---|---|---|---|---|---|---|---|---|
| .................TCCAGTAAACCAACCGAGCGGAAAA............................................................................................................................................................................ | 25 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 |
| .........................ACCAACGGAGCGGAAAACAAAGCAAGCA................................................................................................................................................................. | 28 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .........................ACCAACGGAGCGGAAAACAAAGCAA.................................................................................................................................................................... | 25 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| AGACTGCTAAGGAAAAAT.................................................................................................................................................................................................... | 18 | 1 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 |
| .....................GTAAACCAACCGAGCGG................................................................................................................................................................................ | 17 | 1 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 |
| ............................................................................................................................................AGTAAAACCAACATTAACAGA..................................................... | 21 | 3 | 9 | 0.11 | 1 | 0 | 0 | 0 | 1 | 0 |
| ...........................................................................................................................................................................AAAAGGAGAAGCCAGAGGA........................ | 19 | 2 | 17 | 0.06 | 1 | 0 | 0 | 0 | 0 | 1 |
|
TCTAACGATTCCTTTTTAGGTCATTTGGTTGCCTCGCCTTTTGTTTCGTTCATGCACCAAATAAGATTAGATCTTAGACAAATTTCATTTAAGTTATCTAAAATATTCTTAATCGATGGAACTAAATAGTATATTTACCATCATTTTGGTTATAAATGTATGTCCGACCTTTTTTCTTCTTCGGGCTCCTACCTAGGTTTTTATTAGGCGGCCG
**************************************************.....(((((((((((....(((((((((((.((......)).)))))))))))..)))))..((((((...((((((...)))))))))))).))))))..............************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
M023 head |
SRR618934 dsim w501 ovaries |
SRR553486 Makindu_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................................................ACCTTCATTTTGGTTGTAATTGT....................................................... | 23 | 3 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................TTGACAGATTTCATTTAAGT........................................................................................................................ | 20 | 2 | 4 | 0.50 | 2 | 0 | 2 | 0 | 0 | 0 | 0 |
| ............................................................................GGCAAAGTTCAGTTAAGTTATCTA.................................................................................................................. | 24 | 3 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................TCATTTTGGTTGTAATTGTCT..................................................... | 21 | 3 | 9 | 0.11 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..........................................................................................................................................CTTCATTTTGGTTGTAATTGT....................................................... | 21 | 3 | 11 | 0.09 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................TCAATGTAGGTCCGGCCTT........................................... | 19 | 3 | 11 | 0.09 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ......................................................................AGCTTAGAAAAATTTCATTCA........................................................................................................................... | 21 | 3 | 13 | 0.08 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| .................................................................AATAGATCTTAGACA...................................................................................................................................... | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
Generated: 04/24/2015 at 10:47 AM