ID:dsi_5685 |
Coordinate:3l:7549973-7550122 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
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| -11.9 | -11.9 | -11.7 | -11.7 |
 |
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CDS [3l_7549955_7549972_+]; five_prime_UTR [3l_7549876_7549954_+]; exon [3l_7549876_7549972_+]; intron [3l_7549973_7550618_+]
No Repeatable elements found
| ##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TCAGGAAAATACGAAAATAAACCCACATTCAAATGGCGTTCCTCAACAAGGTGAGCATATCAGTTAGTTTACAAAGCAGAGAAAGTGAAAAACACATAGCTGGCAGATATCATATCCAAAGATCCAAAGTTCTATCGCACTAGTGACGACAGCAACTGTTGATCGTACGCGATTTGGGATCGTACATATATATGTACCTACCTACAAACATATATTCAAGTGGGTTCCGTTTCGAAAACAATTTGTTGCT ********************************************************************************************......((....................(((....((((((.(((((....)).))).)).))))....)))....))******************************************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M023 head |
M053 female body |
M024 male body |
O002 Head |
SRR618934 dsim w501 ovaries |
GSM343915 embryo |
M025 embryo |
SRR902009 testis |
SRR553485 Chicharo_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................................................CACATAGCTGGCAGATATC........................................................................................................................................... | 19 | 0 | 1 | 2.00 | 2 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................CCCACATTCAAATGGCGTTCCT............................................................................................................................................................................................................... | 22 | 0 | 1 | 2.00 | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................CAGCAACTGTTGATCGTACGC................................................................................ | 21 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .CAGGAAAATACGAAAATAAACCCAC................................................................................................................................................................................................................................ | 25 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................ATCCAAAGTTCTGTCGCACTG............................................................................................................ | 21 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................ATGGAGTTCCTCAACAAGGTG..................................................................................................................................................................................................... | 21 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .............................................................................................................................................................................TTGGGATCGTACATATATAT......................................................... | 20 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..........................................................................................................................................ACTAGTGACGACAGCAACTGT........................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .CAGGAAAATACGAAAATAAACCC.................................................................................................................................................................................................................................. | 23 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..............................................................................................CATAGCTGGCAGATATCATATC...................................................................................................................................... | 22 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................................................GGGTTCCGTTTCGAAAAC........... | 18 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............GAAAATAAACCCACATTCAAATGGC..................................................................................................................................................................................................................... | 25 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................TTGGGATCGTACATATATATGC....................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................CAACTGTTGATCGTCCGCGAT............................................................................. | 21 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| .......................................................................................AAAAACACATAGCTGGCAGAT.............................................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................CAGCAACTGTTGATCGTA................................................................................... | 18 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................CCCACATTCAAATGGCGTTCCTC.............................................................................................................................................................................................................. | 23 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................ATTCAAATGGCGTTCCTC.............................................................................................................................................................................................................. | 18 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................................TTGATCGTACGCGATTTGGGA....................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................AGCAACTGTTGATCGTACGCG............................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..........................ATTCAAATGGCGTTCCTCAACAAG........................................................................................................................................................................................................ | 24 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................................................................ATTCAAGTGGGTTCCGTTT.................. | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............AATAAAACCACATTCAAATGGC..................................................................................................................................................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........TACGAAAATAAACCCACATTCAAATGGCGT................................................................................................................................................................................................................... | 30 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ...................................................................................................................................................................CGTACGCGATTTGGGATC..................................................................... | 18 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................AACCCACATTCAAATGGCGTT.................................................................................................................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ....................................................................................................TGGCAGATATCACATC...................................................................................................................................... | 16 | 1 | 12 | 0.08 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .CAGGAAAATACGAAAAAAAC..................................................................................................................................................................................................................................... | 20 | 2 | 12 | 0.08 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................TCAAATGGCGTGCCT............................................................................................................................................................................................................... | 15 | 1 | 13 | 0.08 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...........................TTCAAATGGCGTTCT................................................................................................................................................................................................................ | 15 | 1 | 17 | 0.06 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .............AACCTAAACCCACATTCTA.......................................................................................................................................................................................................................... | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................GTACGCGATTTTGGTTCT.................................................................... | 18 | 3 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
|
AGTCCTTTTATGCTTTTATTTGGGTGTAAGTTTACCGCAAGGAGTTGTTCCACTCGTATAGTCAATCAAATGTTTCGTCTCTTTCACTTTTTGTGTATCGACCGTCTATAGTATAGGTTTCTAGGTTTCAAGATAGCGTGATCACTGCTGTCGTTGACAACTAGCATGCGCTAAACCCTAGCATGTATATATACATGGATGGATGTTTGTATATAAGTTCACCCAAGGCAAAGCTTTTGTTAAACAACGA
********************************************************************************......((....................(((....((((((.(((((....)).))).)).))))....)))....))******************************************************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M023 head |
SRR553485 Chicharo_3 day-old ovaries |
M025 embryo |
SRR553488 RT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
M024 male body |
SRR902008 ovaries |
SRR902009 testis |
SRR553486 Makindu_3 day-old ovaries |
O001 Testis |
O002 Head |
GSM343915 embryo |
SRR553487 NRT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................................................TGTCGTTGACAACTAGCATGC................................................................................. | 21 | 0 | 1 | 8.00 | 8 | 3 | 0 | 4 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................TAGTATAGGTTTCTAGGTTTCAAGAT.................................................................................................................... | 26 | 0 | 1 | 2.00 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................CTAGGTTTCAAGATAGCGTGA............................................................................................................. | 21 | 0 | 1 | 2.00 | 2 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................ACGTCTCTTTCACTTTTTGTG........................................................................................................................................................... | 21 | 1 | 1 | 2.00 | 2 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................TCGTATAGTCAATCAAATGTT................................................................................................................................................................................ | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................................ATGTATATATACATGGATGGATGTT........................................... | 25 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................TTTCACTTTTTGTGTATCGACCGT................................................................................................................................................. | 24 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................TCGTCTCTTTCACTTTTTGTG........................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................TTTCTAGGTTTCAAGATAGCGTGAT............................................................................................................ | 25 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................GGTCGTTGACAACTAGCATGC................................................................................. | 21 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................GGGTGTAAGTTTACCGCAAGGAGT............................................................................................................................................................................................................. | 24 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...............................................................................................................TATAGGTTTCTAGGTTTCAAG...................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .........................................................................................................CTATAGTATAGGTTTCTAGGTTT.......................................................................................................................... | 23 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................CGTATAGTCAATCAAATGTTTCGTCT.......................................................................................................................................................................... | 26 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................CGTCGTTGACAACTAGCATGC................................................................................. | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................TGTCGTTGACAACCAGCATGC................................................................................. | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............CTTTTATTTGGGTGTAAGTTT......................................................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................ACGTGGATGGATGTTTGTATAT.................................... | 22 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................TTCTAGGTTTCAAGATAGCGTGATCACT........................................................................................................ | 28 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................AAGGAGTTGTTCCACTCGTAT............................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .....................................................................................................CCGTCTATAGTATAGGTTTCT................................................................................................................................ | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............................................GTTCCACTCGTATAGTCAATCA...................................................................................................................................................................................... | 22 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| .............................................................................................................AGTATAGGTTTCTAGGTTTCAAGAT.................................................................................................................... | 25 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................................................................................................CCAAGGCAAAGCTTTTGTT......... | 19 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................ATCACTGCTGTCGTTGACAAC......................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................TTCTAGGTTTCAAGATAGCGTGAT............................................................................................................ | 24 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................CCGCAAGGAGTTGTTCCACTC................................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................................TAGGTTTCTAGGTTTCAAT...................................................................................................................... | 19 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................GTCAATCAATTGTTACGTCTC......................................................................................................................................................................... | 21 | 2 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................TGCGCTGGACCCTAGCATGTA............................................................... | 21 | 2 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................TATAAGTTCTCCCAATGTAA................... | 20 | 3 | 12 | 0.42 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................GTGCTCACTGCTGTC.................................................................................................. | 15 | 1 | 4 | 0.25 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................................................................ATATAAGTTCTCCCAATGTAA................... | 21 | 3 | 4 | 0.25 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .....................................................................ATGTTTCGTCATTTTCAC................................................................................................................................................................... | 18 | 2 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ...........................................................................................................................GGTTTCAAGAGAGCGTGT............................................................................................................. | 18 | 2 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................................................................................................CCAAGGCTAATCTTTTGT.......... | 18 | 2 | 8 | 0.13 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................TGCTCACTGCTGTCG................................................................................................. | 15 | 1 | 9 | 0.11 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................TGTCAACTAGCATGCCCTT............................................................................. | 19 | 3 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................TCAAATGTTTAGTCTGTT....................................................................................................................................................................... | 18 | 2 | 17 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................ATAGTTTAGGTTTCTA............................................................................................................................... | 16 | 1 | 17 | 0.06 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................................................ACGGATCTTTGTATATAA.................................. | 18 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....CTTTTAGGCTTCTATTTG.................................................................................................................................................................................................................................... | 18 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Generated: 04/24/2015 at 10:22 AM