ID:

dsi_5684

 Coordinate:

3l:16199453-16199508 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-3.0 -3.0 -2.9

Flybase annnotation

CDS [3l_16199509_16200631_+]; CDS [3l_16199343_16199452_+]; exon [3l_16199509_16200631_+]; exon [3l_16199509_16200631_+]; CDS [3l_16199343_16199452_+]; CDS [3l_16199509_16200631_+]; exon [3l_16199343_16199452_+]; exon [3l_16199343_16199452_+]; intron [3l_16199453_16199508_+]; intron [3l_16199453_16199508_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------##################################################
GAGAATCTGGATGAGGAAATTGTTCCTTATTTACCCACACTTATGGATCGGTAAGACTAGACTATTCGGAAATAAGAGTCCACCCTCTGATAAACTTATTGTGCAGTCTGTTTGGGGTTATGGAACCGCAGAACACGAATCGAATGCGTGAAATGG
**************************************************(((.((..((.....(((((...............)))))....))..)).)))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
...............................................................................................................................GCAGAACACGAATCGAATGC......... 20 0 1 4.00 4 4 0 0 0 0 0 0 0
........................................................................................................................TGGAACCGCAGAACACGAATCGAATG.......... 26 0 1 3.00 3 0 1 2 0 0 0 0 0
................................................................................................................TGGGGTTATGGAACCGCAGAACACGAA................. 27 0 1 2.00 2 0 0 0 0 0 1 0 1
............................................................................................................TGTTTGGGGTTATGGAACCGCAGA........................ 24 0 1 2.00 2 0 0 0 0 2 0 0 0
......................................................................................................................TATGGAACCGCAGAACACGAATCGAATG.......... 28 0 1 2.00 2 0 2 0 0 0 0 0 0
........................................................................................................................TGGAACCGCAGAACACGAATCGAA............ 24 0 1 2.00 2 0 1 1 0 0 0 0 0
.....................................................................................................................TTATGGAACCGCAGAACACGAATC............... 24 0 1 2.00 2 2 0 0 0 0 0 0 0
............................ATTTACCCACACTTATGGATCCTC........................................................................................................ 24 3 1 1.00 1 0 0 0 0 0 1 0 0
...............................................................................................................TTGGGGTTATGGAACCGCAGAACACGA.................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0
..................................................GTAAGACTAGACTATTCGGAA..................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0
........................................................................................................................TGGAACCGCAGAACACGAATCGAATGC......... 27 0 1 1.00 1 0 0 0 1 0 0 0 0
...............................................................................................................TTGGGGTTATGGAACCGCAGAACACGAA................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................TGGGGTTATGGAACCGCAGAACACGA.................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0
...................................................................................................................GGTTATGGAACCGCAGAACACGAATC............... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................TATGGAACCGCAGAACACGAATCGAA............ 26 0 1 1.00 1 0 0 0 1 0 0 0 0
........................................................................................................................TGGAACCGCAGAACACGAATCGA............. 23 0 1 1.00 1 0 0 0 1 0 0 0 0
........................................................................................................................TGGAACCGCAGAACACGAATCGAAT........... 25 0 1 1.00 1 0 0 0 0 0 0 1 0
......................................................................................................................TATGGAACCGCAGAACACGAATC............... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................ACGAATCTAACGCGTGA..... 17 2 4 0.25 1 0 0 0 0 0 0 0 1
.....................................................................................................................TTATGGAACCCCAGTAC...................... 17 2 8 0.13 1 0 0 0 0 1 0 0 0
..........................................................................................................................................ATCGAATGCGTGAAG... 15 1 11 0.09 1 0 1 0 0 0 0 0 0
.......................................................................................................................................CGAAGCTAATGCGTGA..... 16 2 20 0.05 1 0 0 0 0 0 0 0 1
........................................TTATGTATCGGGAAGATTA................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

CTCTTAGACCTACTCCTTTAACAAGGAATAAATGGGTGTGAATACCTAGCCATTCTGATCTGATAAGCCTTTATTCTCAGGTGGGAGACTATTTGAATAACACGTCAGACAAACCCCAATACCTTGGCGTCTTGTGCTTAGCTTACGCACTTTACC
**************************************************(((.((..((.....(((((...............)))))....))..)).)))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
.............................................................................CAGGTGGGAAACTAT................................................................ 15 1 7 0.14 1 1 0
....................................................................................................................................TGTGCTAAGCTTGCACACT..... 19 3 16 0.13 2 0 2

Generated: 04/24/2015 at 02:52 AM