ID:

dsi_5680

 Coordinate:

3r:18901355-18901504 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.3 -32.1 -32.1

Flybase annnotation

CDS [3r_18900647_18906300_-]; exon [3r_18900557_18906300_-]

Repeatable elements

NameClassFamilyStrand
XDMRUnknownUnknown-

Sense Strand Reads

##########################################################################################################################################################################################################################################################
CGTATGCACGACCCCCTCCTAGAATTCCAAAACTTGAATGCAATTCGATTGGGATTTAAGAAACAAACTCAAGGCCCTGTATCGAAGTACGGACCCATCCCACACTTTACATGTGGTCTGTATACTTACCGTGCGATTCGAAGCTGCAGAGATTTATGGACGACGCGGAGCACGGTGTTATATACTTCTCAATGGGACAGGAGATAATGGTGCAGTTTTTGCCTGAAGAAATGCAGCAAAACCTTATGAA
**************************************************........................(((......(((((((((((((((............))).))))))((((..((((((((..((((......((........)).......)))))))))))).)))))))))).....)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 M025
embryo
 M023
head
 SRR902008
ovaries
 O002
Head
................................CTTGAATGCAATTCGATTGGGATT.................................................................................................................................................................................................. 24 0 20 97.00 1940 1940 0 0 0 0 0 0 0 0 0 0 0
.............................AAACTTGAATGCAATTCGATTGGGA.................................................................................................................................................................................................... 25 0 20 40.95 819 0 819 0 0 0 0 0 0 0 0 0 0
................................CTTGAATGCAATTCGATTGGGAT................................................................................................................................................................................................... 23 0 20 28.75 575 0 0 575 0 0 0 0 0 0 0 0 0
................................CTTGAATGCAATTCGATTGGGATTTA................................................................................................................................................................................................ 26 0 20 3.75 75 0 0 75 0 0 0 0 0 0 0 0 0
................................CTTGAATGCAATTCGATTGGGATTT................................................................................................................................................................................................. 25 0 20 3.30 66 0 0 0 66 0 0 0 0 0 0 0 0
..............................AACTTGAATGCAATTCGATTGGG..................................................................................................................................................................................................... 23 0 20 2.30 46 0 0 46 0 0 0 0 0 0 0 0 0
.................................TTGAATGCAATTCGATTGGGATTTAAGA............................................................................................................................................................................................. 28 0 20 1.25 25 12 0 13 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GCTGCAGAGATTTATGGACGACGC.................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................AAACTCGAGGCCCTGTA......................................................................................................................................................................... 17 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................GCTGCAGAGATTTATGGACGAC...................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGGTGCAGTTCAGGCCTGAAGA..................... 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................CGCAGAGAGTTATGGACG........................................................................................ 18 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................CGTGCGATTCGAAGCTGCAGA.................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
................TCCTAGAATTCCAAAACTTGAATGCAAT.............................................................................................................................................................................................................. 28 0 20 0.80 16 0 16 0 0 0 0 0 0 0 0 0 0
......................................................................AAGGCCGTGTATCGA..................................................................................................................................................................... 15 1 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0 0
.............................AAACTTGAATGCGATTCGATTGGGA.................................................................................................................................................................................................... 25 1 20 0.50 10 10 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TATGGACGACGCGGAGCACGGTGTTAT..................................................................... 27 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................ATGGACGACGCGGAGCACGGT.......................................................................... 21 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................TATGGACGACGCGGAGCACGGT.......................................................................... 22 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................CGGAGCACGGTGTTATATACTT............................................................... 22 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................GAGATAATGGTGCAGTTTTTGCCTGA........................ 26 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
...........................CAAAACTTGAATGCAATTCGATTGGGA.................................................................................................................................................................................................... 27 0 20 0.40 8 0 8 0 0 0 0 0 0 0 0 0 0
.................................TTGAATGCAATTCGAATGGGA.................................................................................................................................................................................................... 21 1 20 0.35 7 7 0 0 0 0 0 0 0 0 0 0 0
..............................AACTTGAATGCGATTCGATTGGGATT.................................................................................................................................................................................................. 26 1 20 0.35 7 0 0 7 0 0 0 0 0 0 0 0 0
................................CTTGAATGCAATTCGATTGGGATTTT................................................................................................................................................................................................ 26 1 20 0.30 6 0 0 0 0 0 0 6 0 0 0 0 0
............................AAAACTTGAATGCAATTCGATTGGG..................................................................................................................................................................................................... 25 0 20 0.30 6 0 6 0 0 0 0 0 0 0 0 0 0
........................................................................GGCCCTGTAGCGCAGT.................................................................................................................................................................. 16 2 20 0.30 6 0 2 0 1 0 0 3 0 0 0 0 0
................................CTTGAATGCAATTCGAATGGGA.................................................................................................................................................................................................... 22 1 20 0.30 6 6 0 0 0 0 0 0 0 0 0 0 0
................................CTTGCATGCAATTCGATTGGGATT.................................................................................................................................................................................................. 24 1 20 0.25 5 0 0 5 0 0 0 0 0 0 0 0 0
.....................................................................................GGTACGGACCCATCACA.................................................................................................................................................... 17 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
................TCCTAGAATTCCAAAACTTGAATGC................................................................................................................................................................................................................. 25 0 20 0.20 4 0 0 4 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GCAGAGAGTTATGGTCGAGG..................................................................................... 20 3 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
................................CTTGAATGCAATTCGATTGGGATTTAAGAA............................................................................................................................................................................................ 30 0 20 0.20 4 0 0 4 0 0 0 0 0 0 0 0 0
................................................................ACACTCAAGGCCCTTTAT........................................................................................................................................................................ 18 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0
................TCCTAGAATTCCAAAACTTGAATGAAAT.............................................................................................................................................................................................................. 28 1 20 0.20 4 4 0 0 0 0 0 0 0 0 0 0 0
..................................TGAATGCAATTCGATTGGGATTTAAGAAA........................................................................................................................................................................................... 29 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0
................TCCTAGAATTCCAAAACTTGAATGAAA............................................................................................................................................................................................................... 27 1 20 0.15 3 0 0 0 0 0 0 3 0 0 0 0 0
..............................AACTCGAATGCAATTCGATTGGGATT.................................................................................................................................................................................................. 26 1 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0 0
................................CTTGAATGCAGTTCGATTGGGATT.................................................................................................................................................................................................. 24 1 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0 0
...........................................................................................................................................GATGCTGCAGAGATGTAT............................................................................................. 18 2 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................GCTGAGATTTATGGAC......................................................................................... 16 1 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................TGAATGCAATTCGATTGGGATCTT................................................................................................................................................................................................ 24 2 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0
..............................AACTTGAATGCTATTCGATTGGGA.................................................................................................................................................................................................... 24 1 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0
.................................................TGGGATTTAAGAAACAAACT..................................................................................................................................................................................... 20 0 20 0.10 2 1 0 1 0 0 0 0 0 0 0 0 0
................TCCTAGAATTCCAAAACTTGAGTGCAAT.............................................................................................................................................................................................................. 28 1 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0
...............................ACTTGAATGCGATTCGATTGGGA.................................................................................................................................................................................................... 23 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0
..................................TGAATGCAATTCGATTGG...................................................................................................................................................................................................... 18 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0
................................CTTGAGTGCAATTCGATTGGGAT................................................................................................................................................................................................... 23 1 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0
...................TAGAATTCCAAAACTTGAATGCAAT.............................................................................................................................................................................................................. 25 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0
.................CCTAGAATTCCAAAACT........................................................................................................................................................................................................................ 17 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0
................................CTTGAATGCAATCCGATTGGGATT.................................................................................................................................................................................................. 24 1 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
................................CTTGAATGCAATTCGATTGGG..................................................................................................................................................................................................... 21 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0
.............................AAACTTGAATGCGATTCGATTGGGAT................................................................................................................................................................................................... 26 1 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0
...............CTCCTAGAATTCCAAAAA......................................................................................................................................................................................................................... 18 1 20 0.10 2 1 0 1 0 0 0 0 0 0 0 0 0
..................................TGAAAGCAATTCGATTGGGA.................................................................................................................................................................................................... 20 1 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0
...............................................ATTGGGATTTAAGAAAC.......................................................................................................................................................................................... 17 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
........................TTCCAAAACTTGAATGCAATTCGAT......................................................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
..................................TGAGTGCAATTCGATTGGGA.................................................................................................................................................................................................... 20 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................ATGCAATTCGATTGGGATT.................................................................................................................................................................................................. 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
..................................TGAATCCAATTCGATTGGGATT.................................................................................................................................................................................................. 22 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................TTCGATTGGGATTTAAGAAACAAACTCAA.................................................................................................................................................................................. 29 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
..............CCTCCTAGAATTCCAAAACTTGAATGCA................................................................................................................................................................................................................ 28 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................TGAATGCAATTCGATTGGGATTTAGGAA............................................................................................................................................................................................ 28 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
................................CTCGAATGCAATTCGATTGGGA.................................................................................................................................................................................................... 22 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
................................CTTGAATGCAATTCGAATGGGATT.................................................................................................................................................................................................. 24 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
................................CTTGAGTGCAATTCGATTGGGATTT................................................................................................................................................................................................. 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
...................TAGAATTCCAAAACTTGAGTGCAATT............................................................................................................................................................................................................. 26 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
................................CTTGAATGCAATTCGAGTGGGA.................................................................................................................................................................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
................................CTTGAATGCAATTGGATTGGGATTTA................................................................................................................................................................................................ 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
...............................ACTTGAAAGCAATTCGATTGGGA.................................................................................................................................................................................................... 23 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
...................TAGAATTCCAAAACTTGAATGC................................................................................................................................................................................................................. 22 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
...................TAGAATTCCAAAACTTGAGTGCAAT.............................................................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
................................CTTGAAAGCAATTCGATTGGGAT................................................................................................................................................................................................... 23 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
................TCCTAGAATTCCAAAACTTGAATGCATT.............................................................................................................................................................................................................. 28 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTATTGCCTGAAGAA.................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
............................AAAACTTGAATGCGATTCGATTGGGATT.................................................................................................................................................................................................. 28 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................TTCGATTGGGATTTAAGAAACAAC....................................................................................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................TTGAATGCAATTCGATTGTGATTTAAGA............................................................................................................................................................................................. 28 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
................................CTTGAATGCAATTCGATTGGGAG................................................................................................................................................................................................... 23 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................TAGAATGCAATTCGATTGGGATT.................................................................................................................................................................................................. 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................CGAATGCAATTCGATTGGGATT.................................................................................................................................................................................................. 22 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.................CCTAGAATTCCAAAACTTGAATGCAAT.............................................................................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
................................CTTGAATGCGATTCGATTGGGATCT................................................................................................................................................................................................. 25 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
..............................AACTTGAATGCAATTCGATGGGGA.................................................................................................................................................................................................... 24 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
................................CTTGAATGCAATTCGATTGGGATCTA................................................................................................................................................................................................ 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
...................................GAATGCGATTCGATTGGGATT.................................................................................................................................................................................................. 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

GCATACGTGCTGGGGGAGGATCTTAAGGTTTTGAACTTACGTTAAGCTAACCCTAAATTCTTTGTTTGAGTTCCGGGACATAGCTTCATGCCTGGGTAGGGTGTGAAATGTACACCAGACATATGAATGGCACGCTAAGCTTCGACGTCTCTAAATACCTGCTGCGCCTCGTGCCACAATATATGAAGAGTTACCCTGTCCTCTATTACCACGTCAAAAACGGACTTCTTTACGTCGTTTTGGAATACTT
**************************************************........................(((......(((((((((((((((............))).))))))((((..((((((((..((((......((........)).......)))))))))))).)))))))))).....)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M053
female body
 SRR902008
ovaries
 M024
male body
.............................................GCTAACCCTAAATTCTTTGTTTGAGT................................................................................................................................................................................... 26 0 20 50.70 1014 1012 0 1 0 0 0 0 0 1 0
..............GGAGGATCTTAAGGTTTTGAACTTACGT................................................................................................................................................................................................................ 28 0 20 22.35 447 0 447 0 0 0 0 0 0 0 0
...........................................AAGCTAACCCTAAATTCTTTGTTTGAGT................................................................................................................................................................................... 28 0 20 6.85 137 0 0 137 0 0 0 0 0 0 0
...........................................AAGCTAACCCTAAATTCTTTGTT........................................................................................................................................................................................ 23 0 20 4.80 96 0 0 96 0 0 0 0 0 0 0
...............GAGGATCTTAAGGTTTTGAACTTACGT................................................................................................................................................................................................................ 27 0 20 4.45 89 0 0 0 0 89 0 0 0 0 0
..........................................TAAGCTAACCCTAAATTCTTTGTT........................................................................................................................................................................................ 24 0 20 3.60 72 0 0 0 72 0 0 0 0 0 0
................AGGGTCTTAAGGTTTTGAACTTACGT................................................................................................................................................................................................................ 26 1 20 2.35 47 0 47 0 0 0 0 0 0 0 0
................AGGATCTTAAGGTTTTGAACTCACGT................................................................................................................................................................................................................ 26 1 20 2.00 40 0 0 0 0 0 37 0 0 3 0
..............GGAGGATCTTAAGGTTTTGAACTT.................................................................................................................................................................................................................... 24 0 20 1.70 34 0 0 0 34 0 0 0 0 0 0
..............GGAGGATCTTAAGGTTTTGAACTTACTT................................................................................................................................................................................................................ 28 1 20 1.60 32 0 0 0 19 0 13 0 0 0 0
.............GGGAGGATCTTAAGGTTTTGAACTT.................................................................................................................................................................................................................... 25 0 4 1.50 6 0 0 0 3 0 1 1 0 1 0
.................GGATCTTAAGGTTTTGAACTT.................................................................................................................................................................................................................... 21 0 20 1.50 30 0 4 0 26 0 0 0 0 0 0
................AGGATCTTAAGGTTTTGAACTTACGT................................................................................................................................................................................................................ 26 0 20 1.45 29 0 0 0 0 0 0 0 29 0 0
.................GGATCTTAAGGTTTTGAACTCACGT................................................................................................................................................................................................................ 25 1 20 1.05 21 0 0 0 12 0 0 9 0 0 0
.......................................................................................................................................................................................................................AAAAACGGACTTCCTTACT................ 19 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............GAGGATCTTAAGGTTTTGAACTTA................................................................................................................................................................................................................... 24 0 20 0.95 19 0 0 19 0 0 0 0 0 0 0
..............GGAGGATCTTAAGGTTTTGAAC...................................................................................................................................................................................................................... 22 0 20 0.90 18 0 0 0 0 0 0 18 0 0 0
..................................................................TGAGTTCCGGGAAAT......................................................................................................................................................................... 15 1 5 0.80 4 0 0 0 0 4 0 0 0 0 0
............................................AGCTAACCCTAAATTCTTTGTTTGAGT................................................................................................................................................................................... 27 0 20 0.75 15 0 0 0 13 0 0 0 2 0 0
......................................ACGTTAAGCTAACCCTAAATTCTTTGTT........................................................................................................................................................................................ 28 0 20 0.75 15 0 8 0 0 0 0 0 7 0 0
.................GGATCTTAAGGTTTTGAACTTACTT................................................................................................................................................................................................................ 25 1 20 0.75 15 0 0 6 0 0 9 0 0 0 0
.........................................ATAAGCTAACCCTAAATTCTTTGTT........................................................................................................................................................................................ 25 1 20 0.70 14 0 14 0 0 0 0 0 0 0 0
........................AAGGTTTTGAACTTACGT................................................................................................................................................................................................................ 18 0 20 0.70 14 0 0 0 0 0 14 0 0 0 0
................AGGATCTTAAGGTTTT.......................................................................................................................................................................................................................... 16 0 20 0.65 13 0 0 1 0 12 0 0 0 0 0
..................GATCTTAAGGTTTTGAACTTACGT................................................................................................................................................................................................................ 24 0 20 0.65 13 0 0 0 13 0 0 0 0 0 0
..............................................................CGTGTGAGTTCCGGGAAAT......................................................................................................................................................................... 19 3 19 0.58 11 0 0 0 0 11 0 0 0 0 0
................AGGATCTTCAGGTTTTGAACTTACGT................................................................................................................................................................................................................ 26 1 20 0.55 11 0 0 0 0 0 11 0 0 0 0
.................GGATCTTAAGGTTTTGAACGTACGT................................................................................................................................................................................................................ 25 1 20 0.50 10 0 0 0 0 0 0 10 0 0 0
.....................CTTAAGGTTTTGAACTTACGT................................................................................................................................................................................................................ 21 0 20 0.50 10 0 0 4 0 6 0 0 0 0 0
................AGGATCTTAAGGTTTTGAACTTACGTTA.............................................................................................................................................................................................................. 28 0 20 0.40 8 0 0 8 0 0 0 0 0 0 0
................................................................TGTGAGTTCCGGGAAAT......................................................................................................................................................................... 17 2 11 0.36 4 0 0 0 0 4 0 0 0 0 0
..............GGAGGATCTTAAGGTTTTGAACT..................................................................................................................................................................................................................... 23 0 20 0.35 7 0 2 0 0 0 0 0 0 5 0
.................GGATCTTAATGTTTTGAACTTACGT................................................................................................................................................................................................................ 25 1 20 0.35 7 0 7 0 0 0 0 0 0 0 0
.........................................ATAAGCTAACCCTAAATTCTTTGT......................................................................................................................................................................................... 24 1 20 0.35 7 0 0 0 0 0 7 0 0 0 0
............GGGGAGGATCTTAAGGTTTTGAACT..................................................................................................................................................................................................................... 25 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0
.................................................................TTGAGTTCCGGGAAAT......................................................................................................................................................................... 16 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0
....................................................CTAAATTCTTTGTGTGAGTGCT................................................................................................................................................................................ 22 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0
................AGGATCTTAAGGTTTTGAACTTACG................................................................................................................................................................................................................. 25 0 20 0.30 6 0 0 6 0 0 0 0 0 0 0
........................AAGGTTTTGAACTTACGTTAAGCTAA........................................................................................................................................................................................................ 26 0 20 0.30 6 0 0 3 3 0 0 0 0 0 0
.................GGATCTTAAGGTTTTGAACTTACGTT............................................................................................................................................................................................................... 26 0 20 0.30 6 0 6 0 0 0 0 0 0 0 0
...................ATCTTAAGGTTTTGAACTTACGC................................................................................................................................................................................................................ 23 1 20 0.30 6 6 0 0 0 0 0 0 0 0 0
................AGGATCCTAAGGTTTTGAACTTACGT................................................................................................................................................................................................................ 26 1 20 0.30 6 0 0 0 0 0 6 0 0 0 0
................AGGATCTTAAGGTTTTGAACT..................................................................................................................................................................................................................... 21 0 20 0.30 6 0 3 3 0 0 0 0 0 0 0
...............................................................GTGTGAGTTCCGGGAAAT......................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0
.............GGGAGGATCTTAAGGTTTTGAACTTACGT................................................................................................................................................................................................................ 29 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0
.............GGGAGGATCTTAAGGTTTTGAACTTA................................................................................................................................................................................................................... 26 0 4 0.25 1 0 0 0 0 0 1 0 0 0 0
.............................................................TCGTGTGAGTTCCGGGAAAT......................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0
................AGGATCTTAAGGTTTTGA........................................................................................................................................................................................................................ 18 0 20 0.25 5 0 0 0 0 5 0 0 0 0 0
.................GGGTCTTAAGGTTTTGAACTTACGT................................................................................................................................................................................................................ 25 1 20 0.25 5 0 0 0 4 0 0 0 1 0 0
.......................................CGTTAAGCTAACCCTAAATTCTTTGTT........................................................................................................................................................................................ 27 0 20 0.25 5 0 0 0 0 0 5 0 0 0 0
...................ATCTTAAGGTTTTGAA....................................................................................................................................................................................................................... 16 0 20 0.25 5 0 0 0 0 5 0 0 0 0 0
............................................AGCTAACCCTAAATTCTTTGTTTGAG.................................................................................................................................................................................... 26 0 20 0.20 4 0 4 0 0 0 0 0 0 0 0
..............GGAGGCTCTTAAGGTTTTGAACTTACGT................................................................................................................................................................................................................ 28 1 20 0.20 4 0 0 4 0 0 0 0 0 0 0
...............GAGGATCTTAAGGTTTTGAACTTACG................................................................................................................................................................................................................. 26 0 20 0.20 4 0 3 0 0 0 0 1 0 0 0
......................................ACGTTAAGCTAACCCTAAATTCTTTGT......................................................................................................................................................................................... 27 0 20 0.20 4 0 0 0 0 0 0 0 4 0 0
................................................................................TAGCTTGATGCCTGG........................................................................................................................................................... 15 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0
................AGGATCTTAAGGTTTTGAACGTACGT................................................................................................................................................................................................................ 26 1 20 0.20 4 4 0 0 0 0 0 0 0 0 0
............CGTGAGGATCTTAAGGTTTTGAACTTA................................................................................................................................................................................................................... 27 2 6 0.17 1 0 0 0 0 1 0 0 0 0 0
.....................CTTAAGGTTTTGAACTTACGTTAAGCT.......................................................................................................................................................................................................... 27 0 20 0.15 3 0 0 0 1 0 0 2 0 0 0
........................AAGGTTTTGAACTTACGTTAAGCTAAC....................................................................................................................................................................................................... 27 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0
.........................AGGTTTTGAACTTACGTTA.............................................................................................................................................................................................................. 19 0 20 0.15 3 0 0 0 3 0 0 0 0 0 0
...........................................AAGGTAACCCTAAATTCTTTGTT........................................................................................................................................................................................ 23 1 20 0.15 3 0 0 0 0 0 3 0 0 0 0
...............................................TAACCCTAAATTCTTTGTTTGAGT................................................................................................................................................................................... 24 0 20 0.15 3 0 0 0 0 3 0 0 0 0 0
......GTTCTGGGGGGGGATCTTT................................................................................................................................................................................................................................. 19 3 9 0.11 1 0 0 0 0 0 0 0 1 0 0
..............GGAGGATCTTAAGGTTTTGAACTTA................................................................................................................................................................................................................... 25 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0
.......................TAAGGTTTTGAACTTACGTTAAGCT.......................................................................................................................................................................................................... 25 0 20 0.10 2 0 0 0 0 0 1 1 0 0 0
...............GAGGATCTTTAGGTTTTGAACTTACGT................................................................................................................................................................................................................ 27 1 20 0.10 2 0 0 0 0 0 0 2 0 0 0
......................................................AAATTCTTTGTTTGAG.................................................................................................................................................................................... 16 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0
..............................................................AGTGTGAGTTCCGGGAAAT......................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 2 0 0 0 0 0
...........................................AAGCTAACCCTAAATTCTTTGTTT....................................................................................................................................................................................... 24 0 20 0.10 2 0 0 0 0 0 2 0 0 0 0
......................TTAAGGTTTTGAACTTACGTTA.............................................................................................................................................................................................................. 22 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
...........................................AAGCTAACCCTAAATTCTTTGTTTGA..................................................................................................................................................................................... 26 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0
.............................TTTGAACTTACGTTAAGCTAACCCT.................................................................................................................................................................................................... 25 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
...........................................AAGCTAACCCTAAATTCT............................................................................................................................................................................................. 18 0 20 0.10 2 0 0 1 0 1 0 0 0 0 0
....................TCTTAAGGTTTTGAACTTACGTTA.............................................................................................................................................................................................................. 24 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
...........................................AAGCTAACCCTAAAT................................................................................................................................................................................................ 15 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0
......................TTAAGGTTTTGAACTTACGTTAAGCTAA........................................................................................................................................................................................................ 28 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0
............GTGGAGGATCTTAAGGTTTTGAACT..................................................................................................................................................................................................................... 25 1 20 0.10 2 0 0 0 2 0 0 0 0 0 0
......................................ACGTTAAGCTAACCCTAAATTCTTT........................................................................................................................................................................................... 25 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
............................................AGCTAACCCTAAATTCTTTGT......................................................................................................................................................................................... 21 0 20 0.10 2 0 0 0 0 0 2 0 0 0 0
........................AAGGTTTTGAACTTACGTTAAGCT.......................................................................................................................................................................................................... 24 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0
................AGGATCTTAAGGTTTTGAACTTAC.................................................................................................................................................................................................................. 24 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0
..................GATCTTAAGGTTTTGAACTCACGT................................................................................................................................................................................................................ 24 1 20 0.10 2 0 0 0 2 0 0 0 0 0 0
...................................................................................CTACATGGCGGGGTAGGGT.................................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................CCACGTCAAAGACGGGCTTA...................... 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 1
........................AAGGTTTTGAACTTACGTTAAGCTA......................................................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...............................................TAACCCTAAATTCTTTGTT........................................................................................................................................................................................ 19 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
........................................GTTAAGCTAACCCTAAATTCTTTGTT........................................................................................................................................................................................ 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
..............GGAGGATCTTAAGGTTTTGAACTTAGGT................................................................................................................................................................................................................ 28 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.................GGATCTTAAGGTTTTGAACTTGCTC................................................................................................................................................................................................................ 25 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..................GATCTTAAGGTTTTGAACTCACGTT............................................................................................................................................................................................................... 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
..................GATCTTAAGGTTTTGAACTT.................................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
......................TTAAGGTTTTGAACTTACGTTAAGCTA......................................................................................................................................................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0
...........................................AAGCTTACCCTAAATTCTTTGTT........................................................................................................................................................................................ 23 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
............................................AGCTAACCCTAGATTCTTTGTTTGAGT................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
........................AAGGTTTTGAACTTACGTTAAGCTAACC...................................................................................................................................................................................................... 28 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
...........................................AAGCTAACCCTAAATTCTTTG.......................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
..........................................TAAGCTAACCCTAAATTCTTTGTTT....................................................................................................................................................................................... 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.................GGATCTTAAGGTTTTGAACT..................................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0
........................................GTTAAGCTAACCCTAAATTCTTTGT......................................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1
......................................ACGTTAATCTAACCCTAAATTCTTTGTT........................................................................................................................................................................................ 28 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0
............................................AGCTAACCCTAAATTCTTTG.......................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
..........................................TAAGCTAACCCTAAATTCT............................................................................................................................................................................................. 19 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
....................TCTTAAGGTTTTGAACTTAC.................................................................................................................................................................................................................. 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
........................AAGGTTTTGAACTAACGTTAAGCT.......................................................................................................................................................................................................... 24 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0
..............GGAGGATCTTAAGGTTTTGAACTTAC.................................................................................................................................................................................................................. 26 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
......................TTAAGGTTTTGAACTTA................................................................................................................................................................................................................... 17 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.........................................ATAAGCTAACCCTAAATTCTTTGTTT....................................................................................................................................................................................... 26 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
...............GAGGATCTTAAGGTTTTGAACGTACGT................................................................................................................................................................................................................ 27 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
..........................................TAAGCTAACCCTAAATTCTTTGTTTGAG.................................................................................................................................................................................... 28 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
..............GGAGGATCTTAAGGTTTTGAACTTACGC................................................................................................................................................................................................................ 28 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..............GGAGGATCTTAAGGTTTTGAACTCACTT................................................................................................................................................................................................................ 28 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...........................................AAGCTAACCCTAAATTCTTGGTT........................................................................................................................................................................................ 23 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.......................................CGTTAAGCTAACCCTAAATTCTT............................................................................................................................................................................................ 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.............................................GCTAACCCTAAATTCTTTGT......................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
................AGGATCTTAAGGCTTTGAACTTACGT................................................................................................................................................................................................................ 26 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
................AGGATCTTAAGGTTTTGAACTTACGTC............................................................................................................................................................................................................... 27 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
..........................................AAAGCTAACCCTAAATTGTTTGTTTGAGT................................................................................................................................................................................... 29 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..............GGAGGATCTTAAGGTTTTGAACTTACG................................................................................................................................................................................................................. 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.........................AGGTTTTGAACTTACGTTAAGCTAA........................................................................................................................................................................................................ 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..........................................TAAGCTAACCCTAAATTCTTTGTTTG...................................................................................................................................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0
..................GATCTTAAGGTTTTGAACTTACGC................................................................................................................................................................................................................ 24 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.................GGATCTTAGGGTTTTGAACTTACGT................................................................................................................................................................................................................ 25 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0
...............GAGGATCTAAAGGTTTTGAACTTACGT................................................................................................................................................................................................................ 27 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.................................................................GTGAGTTCCGGGAAAT......................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
................AGGATCTTAAGGTTTCGAACTTACGT................................................................................................................................................................................................................ 26 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..........................................TAAGCTAACCCTAAATTCTTTGT......................................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
...............GAGGGTCTTAAGGTTTTGAACTTACGT................................................................................................................................................................................................................ 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
................AGGATCTTAAGGTTTTGAACTTACGTT............................................................................................................................................................................................................... 27 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.......................TAAGGTTTTGAACTTACGT................................................................................................................................................................................................................ 19 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.........................AGGTTTTGAACTTACGT................................................................................................................................................................................................................ 17 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
................................................AACCCTAAATTCTTTGTT........................................................................................................................................................................................ 18 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..............GGAGGATCTTAAGGTTTTGAACTGACGT................................................................................................................................................................................................................ 28 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
..............GGAGGATCTTAATGTTTTGAACTTACGT................................................................................................................................................................................................................ 28 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..............GGAGGATCTTAAGGTTTTGAACTTACGG................................................................................................................................................................................................................ 28 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
............................................TGCTAACCCTAAATTCTTTGTTTGAGT................................................................................................................................................................................... 27 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..............AGAGGATCTTAAGGTTTTGAACTTACGT................................................................................................................................................................................................................ 28 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.....................CTTAAGGTTTTGAACTCACGT................................................................................................................................................................................................................ 21 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
...............GAGGTTCTTAAGGTTTTGAACTTACGT................................................................................................................................................................................................................ 27 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0
..............GGAGGATCTAAAGGTTTTGAACTTACGT................................................................................................................................................................................................................ 28 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.........................................ATAAGCTAACCCTAAATTCTTTGTTTGAGT................................................................................................................................................................................... 30 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.................GGATCTTAAGGTTTTGAAGTTACGTTA.............................................................................................................................................................................................................. 27 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
........................AAGGTTTTGAACTTACTT................................................................................................................................................................................................................ 18 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
................................GAACTTACGTTAAGCT.......................................................................................................................................................................................................... 16 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
..........................................TAAGCTAACCCTAGATTCTTTGT......................................................................................................................................................................................... 23 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...................................................CCTAAATTCTTTGTTTGAGT................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.................................AACTTACGTTAAGCTAACCCTAAATTC.............................................................................................................................................................................................. 27 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.................................AACTTACGTAAAGCTAACCCTAAATT............................................................................................................................................................................................... 26 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0
...............GAGGATCTTAAGGTTTTGAACGT.................................................................................................................................................................................................................... 23 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0
..............GGAGGATCTTAAGGTTTTGAA....................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
...................................................CCTAAATTCTTTGTTTGAG.................................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.................GGATCTTAAGGATTTGAACTTACGT................................................................................................................................................................................................................ 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...........................................AAGATAACCCTAAATTCTTTGTTTGAGT................................................................................................................................................................................... 28 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..............GGAGGATCTTAAGGTTTTGAGCTTACGT................................................................................................................................................................................................................ 28 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
................................................AACCCTAAATTCTTTGTTTGAGT................................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.................GGCTCTTAAGGTTTTGAACTTACGT................................................................................................................................................................................................................ 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:18901305-18901554 - dsi_5680 CGTATGCACGACCCCCTCCTAGAATTCCAAAACTTGAATGCAATTCGATTGGGATTTAAGAAACAAACTCAAGGCCCTGTATCGAAGTACGGACCCATCCCACACTTTACATGTGGTCTGTATACT-----------------------------TACCGTGCGATTCGAAGCTGCAGAGATTTATGGACGACGCGGAGCACGGTGTTATATACTTCTCAATGGGACAGGAGATAATGGTGCAGTTTTTGCCTGAAGAA------------ATGCAGCAAAACCTTAT-------GAA
droSec2 scaffold_0:19723114-19723287 - TGCACCAA----------------------------------ACATAATAGAG-----------------------------------------------------------GTGGGAGGTCTTCATCTCAGCGAGCCC------------CCTGAACCAAGTGATGAGGAGCTGCAGAAATTTCTGGACACGGCCGATCACGGAGTAATTTACTTCTCGATGGGCAACGACGTTCTGATTAAATTTCTTCCTGCAAAC------------ATTCAGGAGCTACTGCT-------GCA
dm3 chr3R:19359425-19359598 - CGTACCGA----------------------------------ACATCATAGAA-----------------------------------------------------------GTCGGAGGACTGCACCTCACCGAGCCA------------GCTGAGCCGTGCGATTCGAAACTGCAGAAATTTATGGACGACGCGGAGCACGGTGTTATCTACTTCTCCATGGGACAGGAGATAATGGTGCAGTTTTTGCCTGAGGAC------------ATGCAGCAAAACCTTAT-------GAA
droEre2 scaffold_4820:8685823-8685996 + TGTGCCGA----------------------------------ACATCATAGAA-----------------------------------------------------------GTCGGAGGACTGCATCTCACCGAGCCA------------CCTGAGCCGTGCGATGCGAAACTGCAGAGATTTATGGACGACGCGGAGCACGGGGTTATCTATTTCTCGATGGGACAGGAGATATTGGTGCAGTTTTTGCCTGAAGAC------------ATGCAGCAAAACCTTAT-------GAA
droYak3 3R:20243415-20243588 - TGTACCGA----------------------------------ACATCATAGAA-----------------------------------------------------------GTCGGAGGACTGCATCTCAGCGAGCCA------------CCCAAGTATTGCGATGAGAAATTGCAGAGATTTATGGACGAGGCGGAGCACGGTGTTATCTACTTCTCGATGGGACAGGAGATAATGGTGCAGTTTTTGCCCGAGAAC------------ATGCAGCAAAACCTAAT-------GAA
droEug1 scf7180000409798:1059648-1059821 + TGTTCCTA----------------------------------ATATCATCGAG-----------------------------------------------------------GTGGGAGGTCTCCATCTCAGCGAACCT------------CCAGAACCCTGTGGTGAGGATCTTCAGAGGTTTATGGACGAAGCGGAGCACGGAGTCATATACTTCTCGATGGGCTTGGATATCATGGTGCAATTTCTGCCTGAAAAC------------ATGCAACTGCCACTGAT-------GCA
droBia1 scf7180000302075:4890998-4891171 - TGTTCCGA----------------------------------ATATAATAGAG-----------------------------------------------------------GTGGGAGGACTGCATCTCAGCGAACCC------------CCGGAACCATGTGATGAAGAGCTGCAGAGATTTCTGGACGAGGCCGAGCACGGCGTTATCTACTTCTCGATGGGAATGGATATCATGGTGCAGTTTCTGCCTGAGGAT------------ATGCATCATCCGCTGAT-------GCA
droTak1 scf7180000414295:454061-454234 - TGTACCAA----------------------------------ATATCATAGAA-----------------------------------------------------------GTCGGAGGCCTGCATCTCAGTGAGCCA------------CCGGAACCATGTGATGGGGAACTGCAGAGATTTTTGGACGAGGCGGAGAACGGTGTCATTTACTTTTCGATGGGACTAGATATCATGGTGCAGTTCTTGCCCGAAAAC------------ATGCAGCAACAATTGAT-------GCA
droEle1 scf7180000491008:2706279-2706453 + TGTTTCGG----------------------------------GTATGATTGAG-----------------------------------------------------------GTGGCTGGTCTTCACATACCCAAACAG------------ATTCCAAGATTGCCGGAGGATCTGCAGTTGTTCATCGATGAGGCCGAACATGGTGTGATCTACTTCGCTTTGGGTGTGGAGCAGAAGAGTAAAGATTTGCCGAAAGAA------------ACCAAGAAAATGTTGCTG------GAA
droRho1 scf7180000780099:344516-344689 - TGTGCCCA----------------------------------ATCTTATCGAA-----------------------------------------------------------GTGGGAGGTCTGCATCTCAGCGAGCCC------------CCGGAACCAAGTGATGAGAATCTGCAGAGATTTATGGACGAGGCGGAACACGGAGTAATCTATTTTTCAATGGGCCTGGACATCATGGTAAAGTTTCTTCCGGAAAAC------------ATTCAGCAAACTCTTAT-------AAA
droFic1 scf7180000453906:483060-483233 + TGTTCCTA----------------------------------ATATCATCGAA-----------------------------------------------------------GTGGGAGGTTTGCATCTCAGCGAACCT------------CCAGAACCAAGTGATGAAAGCCTCCAAAGATTTATGGACGAGGCGGAGCACGGAGTGATCTATTTCTCCATGGGATTGGATATTTTGGTTCAGTTTTTGCCAGACAAC------------ATGCAGCAACCAATGAT-------GCA
droKik1 scf7180000302639:3245362-3245535 + TGTGCCTA----------------------------------GTATAATCGAT-----------------------------------------------------------GTAGGAGGATTGCACCTCAGCGAAACC------------CCGGAGCCGTGCAGTGAGGAGCTGCAGAGATTTATGGACGAGGCGGAGCACGGAGTCATTTACTTCTCAATGGGTTTGGATATATTGGCAAAATATCTGCCGGACCAC------------ATGCAGCAACCGCTCCT-------GCA
droAna3 scaffold_13340:20186805-20186978 + TGTCCCCA----------------------------------ATGTCATCGAG-----------------------------------------------------------GTGGGAGGAATTCATCTCATCGAGCCC------------CCAAAGCCTTGTGACGAGGACTTGCAACGGTTTTTGGACGAGGCTGAGTACGGGGTCATATACTTTTCGATGGGAGTGGACATTATGGTAAAATACTTGCCACTCGAT------------ATCCAGCAACCATTGCT-------GAA
droBip1 scf7180000396413:2208790-2208963 - CGTTCCTA----------------------------------ATCTCATTGAG-----------------------------------------------------------GTGGGAGGACTGCATCTTAGTGAACCC------------CCAGAACCTTGTGATGAGGTCTTGCAGCGATTTTTGGACGAGGCTGAGCACGGGGTCATTTACTTTTCGTTGGGAATGGATATTATGATAAAATACCTGCCGCTCGAG------------ACACAACAACCATTGCT-------GAA
dp5 2:2849717-2849890 - TGTACCCA----------------------------------ACATCATCGAG-----------------------------------------------------------GTGGCCGGACTTCATCTCAGCGAGCCC------------CCGGAGCCTTGCGATGAGCAGCTGCAACGCTTCCTCGACGAGGCCGAGCACGGCGTCATCTACTTCTCGATGGGAAATGAGATCATGGTGAGGTTCCTGCCCGAGAGC------------ATGCAGCACACGCTGCT-------GCA
droPer2 scaffold_7:1501788-1501961 + TGTACCCA----------------------------------ACATCATCGAG-----------------------------------------------------------GTGGCCGGACTTCATCTCAGCGAGCCC------------CCGGAGCCTTGCGATGAGCAGCTGCAACGCTTCCTCGACGATGCCGAGCACGGCGTCATCTACTTCTCGATGGGCAATGAGATCATGGTGAGGTTCCTGCCCGAGAGC------------ATGCAGCACACGCTGCT-------GCA
droWil2 scf2_1100000004943:7744991-7745176 + TGTGCCGA----------------------------------ATTTAATTGAA-----------------------------------------------------------GTAGCAGGGATGCATATGTGTGTGCACAAAAATTGCAAACTAGATCCTATTCCGGACGATCTTCAGCGATTTATGGATGAAGCGGAGCATGGTGTGATCTATTTCTCAATGGGTGTGGAGATATATATGAAGTGGCTACCAGATAAA------------ATGAAATCTACGTTTCT-------GGA
droVir3 scaffold_13047:4864901-4865081 - TGTTCCCA----------------------------------ATGTCATAGAG-----------------------------------------------------------GTGGCGGGCATCCACTTAGAAAATCCG------------AGCGACCAACTGGATGACGATCTGCAGCGCTTTGTGGACGAGGCCGATCATGGTTTCATCATCTTCTCAATGGGTATGGAAATCACTGGAAAGTGGCTGCCACCGGAC------------TGGCTTCTAATTATGCAGGAAATCTTT
droMoj3 scaffold_6540:21537863-21538046 + CGTTCCCA----------------------------------ATGTCATCGAG-----------------------------------------------------------GTGGCGGGAATGCACCTGGAACAGCCG------------TACGCTGAGCTCGATGGGGAGCTGCAGCAATTTGTGGATGGAGCCGAGCATGGATTCATCATCTTCTCGATGGGATTGGATGTAGCTGAGTGCTGGCTACCCCCCAGGCTGATCGAAATGATGCTGCAAAGCT--TT-------GAG
droGri2 scaffold_14906:10296036-10296209 + TGTCCCCA----------------------------------GCATGGTGGAC-----------------------------------------------------------GTGGGCGGCATGCATGTGCCCAAGCAG------------TTGCCAACACTGCCCGCAGAGCTGGAGCAGTTTATTGAAGAGGCACAACATGGTGTCATCGTCATGTCTCTTGGTCCAGAGATAAAGAGCAAGGATCTGCCGGCGGAA------------AAGCTGCGTATAATTGT-------GGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGTATGCACGACCCCCTCCTAGAATTCCAAAACTTGAATGCAATTCGATTGGGATTTAAGAAACAAACTCAAGGCCCTGTATCGAAGTACGGACCCATCCCACACTTTACATGTGGTCTGTATACT-----------------------------TACCGTGCGATTCGAAGCTGCAGAGATTTATGGACGACGCGGAGCACGGTGTTATATACTTCTCAATGGGACAGGAGATAATGGTGCAGTTTTTGCCTGAAGAA------------ATGCAGCAAAACCTTAT-------GAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................CTTGAATGCAATTCGATTGGGATT..................................................................................................................................................................................................................................................242097.00194000000019400000000000
.............................AAACTTGAATGCAATTCGATTGGGA....................................................................................................................................................................................................................................................252040.958190000000008190000000
................................CTTGAATGCAATTCGATTGGGAT...................................................................................................................................................................................................................................................232028.755750000000575000000000
................................CTTGAATGCAATTCGATTGGGATTTA................................................................................................................................................................................................................................................26203.7575000000075000000000
................................CTTGAATGCAATTCGATTGGGATTT.................................................................................................................................................................................................................................................25203.3066000000000066000000
..............................AACTTGAATGCAATTCGATTGGG.....................................................................................................................................................................................................................................................23202.3046000000046000000000
.................................TTGAATGCAATTCGATTGGGATTTAAGA.............................................................................................................................................................................................................................................28201.25250000001213000000000
...........................................................................................................................................................................GCTGCAGAGATTTATGGACGACGC.......................................................................................................2411.00101000000000000000
...........................................................................................................................................................................GCTGCAGAGATTTATGGACGAC.........................................................................................................2211.00101000000000000000
..............................................................................................................................................................CGTGCGATTCGAAGCTGCAGA.......................................................................................................................2111.00100000000000100000
................TCCTAGAATTCCAAAACTTGAATGCAAT..............................................................................................................................................................................................................................................................28200.8016000000000160000000
.......................................................................................................................................................................................TATGGACGACGCGGAGCACGGTGTTAT........................................................................................2720.50100100000000000000
........................................................................................................................................................................................ATGGACGACGCGGAGCACGGT.............................................................................................2120.50101000000000000000
.......................................................................................................................................................................................TATGGACGACGCGGAGCACGGT.............................................................................................2220.50101000000000000000
..................................................................................................................................................................................................CGGAGCACGGTGTTATATACTT..................................................................................2220.50101000000000000000
.....................................................................................................................................................................................................................................GAGATAATGGTGCAGTTTTTGCCTGA...........................................2620.50100010000000000000
...........................CAAAACTTGAATGCAATTCGATTGGGA....................................................................................................................................................................................................................................................27200.40800000000080000000
................................CTTGAATGCAATTCGATTGGGATTTT................................................................................................................................................................................................................................................26200.30600000000600000000
............................AAAACTTGAATGCAATTCGATTGGG.....................................................................................................................................................................................................................................................25200.30600000000060000000
................TCCTAGAATTCCAAAACTTGAATGC.................................................................................................................................................................................................................................................................25200.20400000004000000000
................................CTTGAATGCAATTCGATTGGGATTTAAGAA............................................................................................................................................................................................................................................30200.20400000004000000000
..................................TGAATGCAATTCGATTGGGATTTAAGAAA...........................................................................................................................................................................................................................................29200.15300000030000000000
.................................................TGGGATTTAAGAAACAAACT.....................................................................................................................................................................................................................................20200.10200000011000000000
..................................TGAATGCAATTCGATTGG......................................................................................................................................................................................................................................................18200.10200000000200000000
...................TAGAATTCCAAAACTTGAATGCAAT..............................................................................................................................................................................................................................................................25200.10200000002000000000
.................CCTAGAATTCCAAAACT........................................................................................................................................................................................................................................................................17200.10200000000020000000
................................CTTGAATGCAATTCGATTGGG.....................................................................................................................................................................................................................................................21200.10200020000000000000
...............CTCCTAGAATTCCAAAAA.........................................................................................................................................................................................................................................................................18200.10200000011000000000
...............................................ATTGGGATTTAAGAAAC..........................................................................................................................................................................................................................................17200.05100000000001000000
........................TTCCAAAACTTGAATGCAATTCGAT.........................................................................................................................................................................................................................................................25200.05100000000100000000
.....................................ATGCAATTCGATTGGGATT..................................................................................................................................................................................................................................................19200.05110000000000000000
...........................................TTCGATTGGGATTTAAGAAACAAACTCAA..................................................................................................................................................................................................................................29200.05100000000100000000
..............CCTCCTAGAATTCCAAAACTTGAATGCA................................................................................................................................................................................................................................................................28200.05100000010000000000
...................TAGAATTCCAAAACTTGAATGC.................................................................................................................................................................................................................................................................22200.05100000000010000000
...........................................TTCGATTGGGATTTAAGAAACAAC.......................................................................................................................................................................................................................................24200.05100000010000000000
................................CTTGAATGCAATTCGATTGGGAG...................................................................................................................................................................................................................................................23200.05101000000000000000
.................CCTAGAATTCCAAAACTTGAATGCAAT..............................................................................................................................................................................................................................................................27200.05100000010000000000
droSec2
TGCACCAA----------------------------------ACATAATAGAG-----------------------------------------------------------GTGGGAGGTCTTCATCTCAGCGAGCCC------------CCTGAACCAAGTGATGAGGAGCTGCAGAAATTTCTGGACACGGCCGATCACGGAGTAATTTACTTCTCGATGGGCAACGACGTTCTGATTAAATTTCTTCCTGCAAAC------------ATTCAGGAGCTACTGCT-------GCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
CGTACCGA----------------------------------ACATCATAGAA-----------------------------------------------------------GTCGGAGGACTGCACCTCACCGAGCCA------------GCTGAGCCGTGCGATTCGAAACTGCAGAAATTTATGGACGACGCGGAGCACGGTGTTATCTACTTCTCCATGGGACAGGAGATAATGGTGCAGTTTTTGCCTGAGGAC------------ATGCAGCAAAACCTTAT-------GAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................GCGGAGCACGGTGTTATCTA.....................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................GCGGAGCACGGTGTTATCTACTT..................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................CGAGCCA------------GCTGAGCCGTGC.......................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..............................................................................................................................................................CGTGCGATTCGAAACTGC..........................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..........................................................................................................................................................................................GGACGACGCGGAGCACGGT.............................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................................................................................................................................................................................CTACTTCTCCATGGGACAGGAGA.................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................TACTTCTCCATGGGACAGGAG..................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000100000000
................................................................................................................................................................................................CGCGGAGCACGGTGTTATCTA.....................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000010000000
.......................................................................................................................................GCCA------------GCTGAGCCGTGCGAT....................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................TGGTGCAGTTTTTGCCTGAGGAC------------ATGC.......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................TGGACGACGCGGAGCACGGTGTTATC.......................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
................................................................................................................................................................................................CGCGGAGCACGGTGTTATC.......................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...................................................................................................................................CCGAGCCA------------GCTGAGCCGTGCG......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................CCA------------GCTGAGCCGTGCGA.....................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................ATCATAGAA-----------------------------------------------------------GTCGGAGGACTGC.............................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
......................................................................................................................................................................................TTATGGACGACGCGGAGCACGG..............................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................AGAA-----------------------------------------------------------GTCGGAGGACTGCACCTCACC.....................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................AATTTATGGACGACGCGGAGCACGGT.............................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...........................................................................................................................................................................................................................CATGGGACAGGAGATAATGGTGC........................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................................................................................................................................................................................................CTCCATGGGACAGGAGATAATGGTGCA.......................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................ATTTATGGACGACGCGGAGCACG...............................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..........................................................................................................................................................................................GGACGACGCGGAGCACGGTGTTATC.......................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............................................CATAGAA-----------------------------------------------------------GTCGGAGGACTGCACCTCACCATC..................................................................................................................................................................3111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................CGAGCCA------------GCTGAGCCGTGCGATT...................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................AAATTTATGGACGACGCGGA....................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................................................................................................................................................................TTATGGACGACGCGGAGCAC................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................................................................................AAATTTATGGACGACGCGGAGCA.................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................................................................................................................................................................................ATGGACGACGCGGAGCACGGTGTT..........................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................................................................................................................................................................AGGAGATAATGGTGCAGTTT...................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..........................................................................................................................................................................................................................CCATGGGACAGGAGATAATGGTGC........................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TTTATGGACGACGCGGAGCACGGT.............................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................................................................................................................................................................ATGGACGACGCGGAGCACGGTGT...........................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..............................................................................................................................................................................................GACGCGGAGCACGGTGTTATCTAC....................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..........................................................................................................................................A------------GCTGAGCCGTGCGATTCGATGG.............................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................................................................................................................................................................................................................CATGGGACAGGAGATAATGGTGCAGT.....................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
......................................................................................................................................................................................TTATGGACGACGCGGAGCACG...............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................ATCATAGAA-----------------------------------------------------------GTCGGAGGACTGCACCTC........................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................................................................ACCTCACCGAGCCA------------GCTGAGC............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................AGAA-----------------------------------------------------------GTCGGAGGACTGCAC...........................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................GAGCCA------------GCTGAGCCGTGCGATTC..................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TACCGA----------------------------------ACATCATAGAA-----------------------------------------------------------GTCG......................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................TGAGGAC------------ATGCAGCAAAACCTT............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................................................................................................................AGCCA------------GCTGAGCCGTGCGA.....................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TCCATGGGACAGGAGATAATGGTGCA.......................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
............................................ATCATAGAA-----------------------------------------------------------GTCGGAGGAC................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................................................................................................................................GGAGCACGGTGTTATCTACT...................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................TTTTTGCCTGAGGAC------------ATGC.......................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................................................................................................................................................................................................CGGAGCACGGTGTTATCTAC....................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................................................................................................................................................................AGGAGATAATGGTGCAGT.....................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................GCTGAGCCGTGCGATTCG.................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
droEre2
TGTGCCGA----------------------------------ACATCATAGAA-----------------------------------------------------------GTCGGAGGACTGCATCTCACCGAGCCA------------CCTGAGCCGTGCGATGCGAAACTGCAGAGATTTATGGACGACGCGGAGCACGGGGTTATCTATTTCTCGATGGGACAGGAGATATTGGTGCAGTTTTTGCCTGAAGAC------------ATGCAGCAAAACCTTAT-------GAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................AGAGATTTATGGACGACGC.......................................................................................................1911.0010000100
...................................................................................................................................................................................................................................................GTTTTTGCCTGAAGAC------------ATGCA......................2111.0010000010
..................................................GAA-----------------------------------------------------------GTCGGAGGACTGCATCTCACC.....................................................................................................................................................................2411.0011000000
...................................................................................................................................................................................GATTTATGGACGACGCGGAGCAC................................................................................................2311.0010000100
..............................................CATAGAA-----------------------------------------------------------GTCGGAGGACTGC.............................................................................................................................................................................2011.0011000000
................................................................................................................................................................................................................................................................GAC------------ATGCAGCAAAACCTTAT-------GA.2211.0011000000
...................................................................................................................................CCGAGCCA------------CCTGAGCCGTGC.......................................................................................................................................2011.0010000010
.................................................................................................................................CACCGAGCCA------------CCTGAGCCGTGC.......................................................................................................................................2211.0010000100
............................................ATCATAGAA-----------------------------------------------------------GTCGGAGGACT...............................................................................................................................................................................2011.0011000000
..................................................................................................................................................................................................................CTATTTCTCGATGGGACAGGA...................................................................2111.0010000100
.....................................................................................................................................................................................................................TTTCTCGATGGGACAGGA...................................................................1811.0010000010
........................................................................................................................................................................................................................................................TGCCTGAAGAC------------ATGCAGCA...................1911.0011000000
...........................................................................................................................................................................ACTGCAGAGATTTATGGAC............................................................................................................1911.0010000010
droYak3
TGTACCGA----------------------------------ACATCATAGAA-----------------------------------------------------------GTCGGAGGACTGCATCTCAGCGAGCCA------------CCCAAGTATTGCGATGAGAAATTGCAGAGATTTATGGACGAGGCGGAGCACGGTGTTATCTACTTCTCGATGGGACAGGAGATAATGGTGCAGTTTTTGCCCGAGAAC------------ATGCAGCAAAACCTAAT-------GAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................CTCGATGGGACAGGAGATA...............................................................1911.00100000010000
................................................TAGAA-----------------------------------------------------------GTCGGAGGACTGCAT...........................................................................................................................................................................2011.00100000010000
.............................................................................................................................ATCTCAGCGAGCCA------------CCCAAGG............................................................................................................................................2111.00100100000000
..............................................CATAGAA-----------------------------------------------------------GTCGGAGGACTGC.............................................................................................................................................................................2011.00100000010000
........................................................................................................................................................................................................................CTCGATGGGACAGGAGATAAT.............................................................2111.00100000010000
.................................................................................................................................................................................GAGATTTATGGACGAGGCGGAGCAC................................................................................................2511.00101000000000
........................................................................................................................................................................................................................CTCGATGGGACAGGAGATAATG............................................................2211.00100000010000
.......................................................................................................................................................................................................CACGGTGTTATCTACTTCTCGATGGGAC.......................................................................2811.00100100000000
..........................................................................................................................................................................AATTGCAGAGATTTATGGACGAGGCGGA....................................................................................................2811.00100100000000
...............................................................................................................................................................................................................................................................................ATGCAGCAAAACCTAAT-------GA.1911.00101000000000
................................................................................................................................................................................AGAGATTTATGGACGAGGC.......................................................................................................1911.00100001000000
........................................................................................................................................................................GAAATTGCAGAGATTTATGGACGAGG........................................................................................................2611.00100000010000
.......................................................................................................................................................................................TATGGACGAGGCGGAGCACGGT.............................................................................................2211.00100000010000
.......................................................................................................................................................................................TATGGACGAGGCGGAGCAC................................................................................................1911.00110000000000
........................................................................................................................................................................................ATGGACGAGGCGGAGCACGGT.............................................................................................2111.00100000010000
........................................................................................................................................................................GAAATTGCAGAGATTTATGGACGAGGC.......................................................................................................2711.00100100000000
.............................................................................................................................................................................................................GTTATCTACTTCTCGATGG..........................................................................1920.50101000000000
droEug1
TGTTCCTA----------------------------------ATATCATCGAG-----------------------------------------------------------GTGGGAGGTCTCCATCTCAGCGAACCT------------CCAGAACCCTGTGGTGAGGATCTTCAGAGGTTTATGGACGAAGCGGAGCACGGAGTCATATACTTCTCGATGGGCTTGGATATCATGGTGCAATTTCTGCCTGAAAAC------------ATGCAACTGCCACTGAT-------GCASizeHit CountTotal NormTotal
No Reads
droBia1
TGTTCCGA----------------------------------ATATAATAGAG-----------------------------------------------------------GTGGGAGGACTGCATCTCAGCGAACCC------------CCGGAACCATGTGATGAAGAGCTGCAGAGATTTCTGGACGAGGCCGAGCACGGCGTTATCTACTTCTCGATGGGAATGGATATCATGGTGCAGTTTCTGCCTGAGGAT------------ATGCATCATCCGCTGAT-------GCASizeHit CountTotal NormTotal
No Reads
droTak1
TGTACCAA----------------------------------ATATCATAGAA-----------------------------------------------------------GTCGGAGGCCTGCATCTCAGTGAGCCA------------CCGGAACCATGTGATGGGGAACTGCAGAGATTTTTGGACGAGGCGGAGAACGGTGTCATTTACTTTTCGATGGGACTAGATATCATGGTGCAGTTCTTGCCCGAAAAC------------ATGCAGCAACAATTGAT-------GCASizeHit CountTotal NormTotal
No Reads
droEle1
TGTTTCGG----------------------------------GTATGATTGAG-----------------------------------------------------------GTGGCTGGTCTTCACATACCCAAACAG------------ATTCCAAGATTGCCGGAGGATCTGCAGTTGTTCATCGATGAGGCCGAACATGGTGTGATCTACTTCGCTTTGGGTGTGGAGCAGAAGAGTAAAGATTTGCCGAAAGAA------------ACCAAGAAAATGTTGCTG------GAASizeHit CountTotal NormTotal
No Reads
droRho1
TGTGCCCA----------------------------------ATCTTATCGAA-----------------------------------------------------------GTGGGAGGTCTGCATCTCAGCGAGCCC------------CCGGAACCAAGTGATGAGAATCTGCAGAGATTTATGGACGAGGCGGAACACGGAGTAATCTATTTTTCAATGGGCCTGGACATCATGGTAAAGTTTCTTCCGGAAAAC------------ATTCAGCAAACTCTTAT-------AAASizeHit CountTotal NormTotal
No Reads
droFic1
TGTTCCTA----------------------------------ATATCATCGAA-----------------------------------------------------------GTGGGAGGTTTGCATCTCAGCGAACCT------------CCAGAACCAAGTGATGAAAGCCTCCAAAGATTTATGGACGAGGCGGAGCACGGAGTGATCTATTTCTCCATGGGATTGGATATTTTGGTTCAGTTTTTGCCAGACAAC------------ATGCAGCAACCAATGAT-------GCASizeHit CountTotal NormTotal
No Reads
droKik1
TGTGCCTA----------------------------------GTATAATCGAT-----------------------------------------------------------GTAGGAGGATTGCACCTCAGCGAAACC------------CCGGAGCCGTGCAGTGAGGAGCTGCAGAGATTTATGGACGAGGCGGAGCACGGAGTCATTTACTTCTCAATGGGTTTGGATATATTGGCAAAATATCTGCCGGACCAC------------ATGCAGCAACCGCTCCT-------GCASizeHit CountTotal NormTotal
No Reads
droAna3
TGTCCCCA----------------------------------ATGTCATCGAG-----------------------------------------------------------GTGGGAGGAATTCATCTCATCGAGCCC------------CCAAAGCCTTGTGACGAGGACTTGCAACGGTTTTTGGACGAGGCTGAGTACGGGGTCATATACTTTTCGATGGGAGTGGACATTATGGTAAAATACTTGCCACTCGAT------------ATCCAGCAACCATTGCT-------GAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................CTTTTCGATGGGAGTGGACATTATGGT..........................................................2712.002010010
......................................................................................................................................................................................TTTTGGACGAGGCTGAGTACGGG.............................................................................................2311.001100000
..............................................................................................................................................................................................................................GGGAGTGGACATTATGGTA.........................................................1911.001000010
.........................................................................................................................ATTCATCTCATCGAGCCC------------CCAAAGCC...........................................................................................................................................2611.001100000
............................................................................................................................................................................................................................ATGGGAGTGGACATTATG............................................................1811.001100000
.........................................................................................................................................................................................................................TCGATGGGAGTGGACATTATG............................................................2111.001100000
................................................................................................................GTGGGAGGAATTCATCTCA.......................................................................................................................................................................1911.001010000
.............................................................................................................................................................................................................GTCATATACTTTTCGATGGGAGTGGAC..................................................................2711.001000010
.............................................................................................................................................................................................................................................GGTAAAATACTTGCCACTCGAT------------...........................2211.001010000
.....................................................................................................................................................................................................................CTTTTCGATGGGAGTGGAC..................................................................1911.001000010
....................................................................................................................................................................................................................ACTTTTCGATGGGAGTGGAC..................................................................2011.001010000
..............................................................................................................................................................................................GAGGCTGAGTACGGGGTC..........................................................................................1811.001010000
...............................................................................................................................................................................................................CATATACTTTTCGATGGGAGT......................................................................2111.001000010
..........................................................................................................................................................................................................................CGATGGGAGTGGACATTATGGTA.........................................................2311.001001000
...............................................................................................................................................................................................................CATATACTTTTCGATGGGAGTGGAC..................................................................2511.001000010
.....................................................................................................................................................................................................................CTTTTCGATGGGAGTGGACATTATT............................................................2511.001001000
...............................................................................................................................................................................................................CATATACTTTTCGATGGGAGTG.....................................................................2211.001000010
..............................................................................................................................................................................................................................GGGAGTGGACATTATGGT..........................................................1811.001000010
..............................................................................................................................................................................................................TCATATACTTTTCGATGGGAGTGGAC..................................................................2611.001100000
.......................................................................................................................................................................................TTTGGACGAGGCTGAGTACGGGGTCAT........................................................................................2711.001100000
...............................................................................................................................................................................................................................................................CGAT------------ATCCAGCAACCATTGCT-------...2111.001010000
droBip1
CGTTCCTA----------------------------------ATCTCATTGAG-----------------------------------------------------------GTGGGAGGACTGCATCTTAGTGAACCC------------CCAGAACCTTGTGATGAGGTCTTGCAGCGATTTTTGGACGAGGCTGAGCACGGGGTCATTTACTTTTCGTTGGGAATGGATATTATGATAAAATACCTGCCGCTCGAG------------ACACAACAACCATTGCT-------GAASizeHit CountTotal NormTotal
No Reads
dp5
TGTACCCA----------------------------------ACATCATCGAG-----------------------------------------------------------GTGGCCGGACTTCATCTCAGCGAGCCC------------CCGGAGCCTTGCGATGAGCAGCTGCAACGCTTCCTCGACGAGGCCGAGCACGGCGTCATCTACTTCTCGATGGGAAATGAGATCATGGTGAGGTTCCTGCCCGAGAGC------------ATGCAGCACACGCTGCT-------GCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................CTTCCTCGACGAGGCCGAGC..................................................................................................2011.0010100000000
..........................................................................................................................................................................................................................CGATGGGAAATGAGATCATGGTGAG.......................................................2511.0010000001000
.......................................................................................................................................................................................................................................GATCATGGTGAGGTTCCTGCCC.............................................2211.0010100000000
..................................................................................................................GGCCGGACTTCATCTCAGC.....................................................................................................................................................................1911.0010100000000
droPer2
TGTACCCA----------------------------------ACATCATCGAG-----------------------------------------------------------GTGGCCGGACTTCATCTCAGCGAGCCC------------CCGGAGCCTTGCGATGAGCAGCTGCAACGCTTCCTCGACGATGCCGAGCACGGCGTCATCTACTTCTCGATGGGCAATGAGATCATGGTGAGGTTCCTGCCCGAGAGC------------ATGCAGCACACGCTGCT-------GCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................AGCTGCAACGCTTCCTCGACGATGCC......................................................................................................2613.003300000
..............................................CATCGAG-----------------------------------------------------------GTGGCCGGACTTCATCTCA.......................................................................................................................................................................2611.001100000
droWil2
TGTGCCGA----------------------------------ATTTAATTGAA-----------------------------------------------------------GTAGCAGGGATGCATATGTGTGTGCACAAAAATTGCAAACTAGATCCTATTCCGGACGATCTTCAGCGATTTATGGATGAAGCGGAGCATGGTGTGATCTATTTCTCAATGGGTGTGGAGATATATATGAAGTGGCTACCAGATAAA------------ATGAAATCTACGTTTCT-------GGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................ATATGAAGTGGCTACCAG............................................1812.00200020
.............................................................................................................................................................CCTATTCCGGACGATCTTC..........................................................................................................................1912.00220000
............................................................................................................................................................................................................................................ATATGAAGTGGCTACCAGAT..........................................2011.00100100
..............................................................................................................................................................................................GAAGCGGAGCATGGTGTG..........................................................................................1811.00100100
................................................................................................................................................................ATTCCGGACGATCTTCAGC.......................................................................................................................1911.00100010
...............................................................................................................................................................................CAGCGATTTATGGATGAAGCGGAGC..................................................................................................2511.00100010
......................................................................................................................................................................................TTATGGATGAAGCGGAGCATGGTGT...........................................................................................2511.00100010
..........................................................................................................................................................GATCCTATTCCGGACGATCTTCAGCG......................................................................................................................2611.00101000
............................................................................................................................................................TCCTATTCCGGACGATCTTC..........................................................................................................................2011.00101000
............................................................................................................................................................................................................................................ATATGAAGTGGCTACCAGA...........................................1911.00100010
..............................................................................................................................................................................................................................................................ATAAA------------ATGAAATCTACGTTT............2011.00100010
..............................................................................................................................................................................................GAAGCGGAGCATGGTGTGATC.......................................................................................2111.00100100
..............................................................................................................................................................................................................................................ATGAAGTGGCTACCAGATAA........................................2011.00100010
........................................................................................................................................................................................ATGGATGAAGCGGAGCATGGTGT...........................................................................................2311.00100100
...........................................TTTAATTGAA-----------------------------------------------------------GTAGCAGGGATG..............................................................................................................................................................................2211.00100100
....................................................................................................................................................................................ATTTATGGATGAAGCGGAGCATGGT.............................................................................................2511.00100100
.......................................................................................................................................................................................................................TCTCAATGGGTGTGGAGATATA.............................................................2211.00100100
....................................................................................................................................................................................ATTTATGGATGAAGCGGAGC..................................................................................................2011.00100100
.GTGCCGA----------------------------------ATTTAATTGAA-----------------------------------------------------------GTAGCAGG..................................................................................................................................................................................2611.00100010
........................................................................................................................................................................................................................................ATATATATGAAGTGGCTACCAG............................................2211.00100010
..........................................ATTTAATTGAA-----------------------------------------------------------GTAGCAGGGATGC.............................................................................................................................................................................2411.00101000
..............................................................................................................................................................................................GAAGCGGAGCATGGTGTGATCTATT...................................................................................2511.00100010
...................................................................................................................................................................................GATTTATGGATGAAGCGGAGCATG...............................................................................................2411.00100100
....................................................................................................................................................................................................................ATTTCTCAATGGGTGTGGA...................................................................1920.50101000
...................................................................................................................................................................................................................TATTTCTCAATGGGTGTGGAGA.................................................................2220.50100100
................................................................................................................GTAGCAGGGATGCATATGTGTGTGCA................................................................................................................................................................2630.33100010
...................................................................................................................GCAGGGATGCATATGTGTGTG..................................................................................................................................................................2130.33100100
................................................................................................................GTAGCAGGGATGCATATGTGTGTG..................................................................................................................................................................2430.33100100
................................................TTGAA-----------------------------------------------------------GTAGCAGGGATGCATA..........................................................................................................................................................................2130.33100001
..............................................AATTGAA-----------------------------------------------------------GTAGCAGGGATGC.............................................................................................................................................................................2030.33100010
..................................................................................................................AGCAGGGATGCATATGTGT.....................................................................................................................................................................1930.33100100
....................................................................................................................................................AAACTAGATCCTATTCCGG...................................................................................................................................1930.33100010
droVir3
TGTTCCCA----------------------------------ATGTCATAGAG-----------------------------------------------------------GTGGCGGGCATCCACTTAGAAAATCCG------------AGCGACCAACTGGATGACGATCTGCAGCGCTTTGTGGACGAGGCCGATCATGGTTTCATCATCTTCTCAATGGGTATGGAAATCACTGGAAAGTGGCTGCCACCGGAC------------TGGCTTCTAATTATGCAGGAAATCTTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................GATGACGATCTGCAGCGCTTTGT................................................................................................................2321.002000000000000000010000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................ATCACTGGAAAGTGGCTGC...............................................1921.002001000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................TGGATGACGATCTGCAGCGC.....................................................................................................................2020.501000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................CTGCAGCGCTTTGTGGACGAGGC.......................................................................................................2320.501000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................TGACGATCTGCAGCGCTTTGTGGACGA..........................................................................................................2720.501000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................CTTCTCAATGGGTATGGAAAT................................................................2120.501000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................GATCATGGTTTCATCATCTTCT................................................................................2220.501001000000000000000000000000000000000000000000000000000000000000
............................................GTCATAGAG-----------------------------------------------------------GTGGCGGGCAT...............................................................................................................................................................................2020.501001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................GTATGGAAATCACTGGAAAGTGGCTGC...............................................2720.501000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................CTGCAGCGCTTTGTGGACG...........................................................................................................1920.501001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................CG------------AGCGACCAACTGGATGACGAT..............................................................................................................................2320.501001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................ACTGGATGACGATCTGCAGCGCT....................................................................................................................2320.501100000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................CTGCAGCGCTTTGTGGACGA..........................................................................................................2020.501001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................GTATGGAAATCACTGGAAAGT.....................................................2120.501001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................CTGGATGACGATCTGCAGCGCTTTGT................................................................................................................2620.501001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................CATCCACTTAGAAAATCCG------------AGC................................................................................................................................................2220.501000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................CATCTTCTCAATGGGTATGGA...................................................................2120.501001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................CGATCTGCAGCGCTTTGTGGACGAGGC.......................................................................................................2720.501001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................AAAATCCG------------AGCGACCAACTGGATGAC.................................................................................................................................2620.501000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TTCATCATCTTCTCAATGGGT........................................................................2120.501000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................CACCGGAC------------TGGCTTCTAATT...............2020.501000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................GAAATCACTGGAAAGTGGC..................................................1920.501001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................CATGGTTTCATCATCTTCTCAATGG..........................................................................2520.501001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................GACGATCTGCAGCGCTTTGT................................................................................................................2020.501001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................CAATGGGTATGGAAATCACT............................................................2020.501000000000000001000000000000000000000000000000000000000000000000
..............................................CATAGAG-----------------------------------------------------------GTGGCGGGCATCCACT..........................................................................................................................................................................2320.501000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................................GACGAGGCCGATCATGGT.............................................................................................1820.501001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................CATCATCTTCTCAATGGGTATG.....................................................................2220.501000000000000001000000000000000000000000000000000000000000000000
..............................................................................................................................................................................GCAGCGCTTTGTGGACGAGGCC......................................................................................................2220.501000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................AGCGCTTTGTGGACGAGGCCGATCAT................................................................................................2620.501001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................TTGTGGACGAGGCCGATCATGGTTT...........................................................................................2520.501001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................ATCCG------------AGCGACCAACTGGAT....................................................................................................................................2020.501001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................ATCACTGGAAAGTGGCTGCC..............................................2020.501000000000000000000000000000000000000000100000000000000000000000
...............................................................................................................................................................ACTGGATGACGATCTGCAGCGC.....................................................................................................................2220.501000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................CTGCAGCGCTTTGTGGAC............................................................................................................1820.501000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................ACTGGATGACGATCTGCA.........................................................................................................................1820.501001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................AATCACTGGAAAGTGGCTGCCACCGGA........................................2720.501001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................CATCATCTTCTCAATGGGTATGGA...................................................................2420.501000000000000000100000000000000000000000000000000000000000000000
..............................................................................................................................................................AACTGGATGACGATCTGCA.........................................................................................................................1920.501000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................AATCCG------------AGCGACCAACTGGAT....................................................................................................................................2120.501000000000000001000000000000000000000000000000000000000000000000
droMoj3
CGTTCCCA----------------------------------ATGTCATCGAG-----------------------------------------------------------GTGGCGGGAATGCACCTGGAACAGCCG------------TACGCTGAGCTCGATGGGGAGCTGCAGCAATTTGTGGATGGAGCCGAGCATGGATTCATCATCTTCTCGATGGGATTGGATGTAGCTGAGTGCTGGCTACCCCCCAGGCTGATCGAAATGATGCTGCAAAGCT--TT-------GAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................ATTTGTGGATGGAGCCGAGC..................................................................................................2011.001000001
..........................................................................................................................................................................................................................................AGCTGAGTGCTGGCTACCCCCCAGGCT.....................................2711.001100000
droGri2
TGTCCCCA----------------------------------GCATGGTGGAC-----------------------------------------------------------GTGGGCGGCATGCATGTGCCCAAGCAG------------TTGCCAACACTGCCCGCAGAGCTGGAGCAGTTTATTGAAGAGGCACAACATGGTGTCATCGTCATGTCTCTTGGTCCAGAGATAAAGAGCAAGGATCTGCCGGCGGAA------------AAGCTGCGTATAATTGT-------GGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:47 AM