ID:

dsi_5662

 Coordinate:

3l:11763073-11763222 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_11762941_11763072_-]; CDS [3l_11762941_11763072_-]; intron [3l_11763073_11763428_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TATTTTTTGTTAAGCCCACACGGCGTATGAGTTATGTGCATTTTTTGAGCACCGAAACAAACGTAACTGGACAAAACCATTGTTAACTTGACTGCTTTTTAACAAATAGATTTGCTGATTTTTTATACATTTTAATTTGCTGGCTTAGTACAGCCACACCCCTGCCCACACTTCTAATGGTTCTATAATCGATCTTCCAGCGTTTCCTCCGCACCAAGCAATATAATAACAACTGGCTGAGTGGAGCCCA
**************************************************................(((((...((((((((....................(((((.((..((.(((....)))..))..)).))))).(((((......)))))..................)))))))).............)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
.......................................................................................................................................................................................TATAATCGATCTTCCAGCG................................................ 19 0 1 1.00 1 1 0 0 0
.............................................................CGTAACTGGACAAAAAC............................................................................................................................................................................ 17 1 1 1.00 1 0 1 0 0
..................................................................................................................................................................TGCTCACACTTCTAA......................................................................... 15 1 8 0.13 1 0 0 1 0
.......................................................................................TTGATTGCCTTTTAACAAAGA.............................................................................................................................................. 21 3 11 0.09 1 0 0 0 1

Anti-sense strand reads

ATAAAAAACAATTCGGGTGTGCCGCATACTCAATACACGTAAAAAACTCGTGGCTTTGTTTGCATTGACCTGTTTTGGTAACAATTGAACTGACGAAAAATTGTTTATCTAAACGACTAAAAAATATGTAAAATTAAACGACCGAATCATGTCGGTGTGGGGACGGGTGTGAAGATTACCAAGATATTAGCTAGAAGGTCGCAAAGGAGGCGTGGTTCGTTATATTATTGTTGACCGACTCACCTCGGGT
**************************************************................(((((...((((((((....................(((((.((..((.(((....)))..))..)).))))).(((((......)))))..................)))))))).............)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body
...........................................................................................................................................................TTTGGGGACGGGTGTGAAGGTTA........................................................................ 23 2 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................CAAGATATTAGCTAGAAGG.................................................... 19 0 1 1.00 1 0 1 0 0 0
.......................................................................................................................................................................................................CGCCAAGGAGGCATGATTCG............................... 20 3 2 0.50 1 0 0 1 0 0
.............................................................................................................................................................TGCGGACGGGTGTGAAGAAAA........................................................................ 21 3 3 0.33 1 1 0 0 0 0
..........................................................................CTGCTAACAATTGAACTG.............................................................................................................................................................. 18 2 5 0.20 1 0 0 0 0 1
..................................................................................................................................................TCGTGACGGTGTGGGGAAGGG................................................................................... 21 3 7 0.14 1 1 0 0 0 0
..........................................................................................................................................................................................TTAGCTAGAAGGTAG................................................. 15 1 8 0.13 1 0 0 0 1 0
.............................................................................................................TAAACGACTAAAAAA.............................................................................................................................. 15 0 8 0.13 1 0 0 0 1 0
.................................................................................................................................................ATCATGTCGGTGGGGC......................................................................................... 16 2 19 0.05 1 0 0 1 0 0
..............................................................................................................................................................................................................................TAGCATTGTTGACCGA............ 16 2 20 0.05 1 0 0 1 0 0
.........................................AAAAACTGGTGGGTATGTTT............................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 1 0

Generated: 04/24/2015 at 10:37 AM