dsi_5647

CGATGGTCCGCGGATCGGTGGCAACGATGGAGATATTACAGAGCGCGGACGTCAGTGGTTTTTATTTTCATCATTTTACTTACTTACTTTCCAACATATTATTTCGTTTATATTTATTTATGTAGTCCTGTGTTATTGTACACCACACAATTTTAGTTCACTGTGTTGTTTTTATTATTGCACATCCTTTTGTTGTTTATTTCGTCCTTGCACTGCTTTGTAAAGCAAAGTATATTTAGTTTGTGTTGTT ************************************************....(((((...(((......(((...(((.............(((((....................))))))))...))).....))).)))))(((((...((.....(((((.((.......)).)))))..))...)))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR618934 dsim w501 ovaries
..................................................................................................................................................................................................GTTTATTTCGTCCTTGCACTG...................................	21	0	1	1.00	1	1	0
..........................ATGGAGATATTACAGAGCGCGGACC.......................................................................................................................................................................................................	25	1	1	1.00	1	1	0
.........................GATGGAGATATTACAGAGCGCGGACC.......................................................................................................................................................................................................	26	1	1	1.00	1	1	0
.............................GCTATATTACAGAGCG.............................................................................................................................................................................................................	16	2	20	0.05	1	0	1
.......................................................................................................................................................................................ATCCTTTGCTTGTTTATCTC...............................................	20	3	20	0.05	1	0	1

GCTACCAGGCGCCTAGCCACCGTTGCTACCTCTATAATGTCTCGCGCCTGCAGTCACCAAAAATAAAAGTAGTAAAATGAATGAATGAAAGGTTGTATAATAAAGCAAATATAAATAAATACATCAGGACACAATAACATGTGGTGTGTTAAAATCAAGTGACACAACAAAAATAATAACGTGTAGGAAAACAACAAATAAAGCAGGAACGTGACGAAACATTTCGTTTCATATAAATCAAACACAACAA ************************************************....(((((...(((......(((...(((.............(((((....................))))))))...))).....))).)))))(((((...((.....(((((.((.......)).)))))..))...)))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries
.................................................................................................................................................................ACACAACAAAAATAATAAC......................................................................	19	0	1	1.00	1	1	0	0
..............AGCTACCGTTGCTACCT...........................................................................................................................................................................................................................	17	1	2	0.50	1	0	1	0
..........................................................AAGAGTAAAAGTAGGAAAATGA..........................................................................................................................................................................	22	3	9	0.11	1	0	1	0
...............GCTACCGTTGCTACCT...........................................................................................................................................................................................................................	16	1	12	0.08	1	0	1	0
........................................................................................................................................................................................................TAGCAGGAAGGTGACGA.................................	17	2	18	0.06	1	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2r:17840082-17840331 -	dsi_5647	CGATGGT------------------C------C---------------------GCGGAT---------------CGGTGGCAACGATG---GAGATAT---TAC-AG--AGCGCGGACGTCAGTGGTTTTT--ATTTTCATCATTTTA---CTTACTTACTT------------------------TCCAACA--TATTATTTCGTT------------------------TAT----ATTTA--------------------TTTATGTAGT-----------CC--TGTGT-TAT-------------------------T--GTACACCACA----------------------------------------------------------CAATTTTAGTTCACTGTGTTGTTT----------------------------------------------TTATTATTGCACA------------------------------------------------------TCCTTT----TGTTGTTTAT--TTCGTC--CT-TGCACTGCTTT-GTAAAG-CAAAGTATATTT--------------------------------------AGTT-----TGTGTTGTT
droSec2	scaffold_9:616644-616891 -		CGATGGT------------------C------C---------------------GCGGAT---------------CGGTGGCAACGATG---GAGATAT---TAC-AG--AGCGCGGACGTCAGTGGTTTTT--ATTTTCATCATTTTA---CTTACTTACTT------------------------TTCAACA--TATTATTTCGTT------------------------TAT----ATTTA--------------------TTTATGTAGT-----------CC--TGTGT-TAT-------------------------T--GTATACCATA----------------------------------------------------------CAATTTTAGTTCACTGTGTTGTTT----------------------------------------------TTATTGTTGCACA------------------------------------------------------TCCTTT----TGTTGTTTAT--TTCGTC--CT-TGCACTGCATT-GTAAAG-CAAAGTATATTT--------------------------------------AGTT-----TGTGTTG--
dm3	chr2R:17285376-17285619 -		CGATGGT------------------C------C---------------------GCGGAT---------------CGGTGGCAACGATG---GAGATAT---TAC-AG--AGCGCGGACGTCAGTGGTTTTT--ATTTTCATCATTTAA---CTTACTTACTT------------------------TTCAACA--TTTTATTTCGTT------------------------TAT----ATTTA--------------------TTTATGTAGT-----------CT--TGTGT-TAT--T--AT------------------T--GTACACGATA----------------------------------------------------------CAGT---------TTGTGTTGTTT----------------------------------------------TTATTATTGCACA------------------------------------------------------TCCTTT----TGTTGTTTAT--TTGGTC--CT-TGCACTGCTTT-CTAAAG-CAAAGTATATTT--------------------------------------AGTT-----TGTGTTGTT
droEre2	scaffold_4845:11429922-11430103 -		CGATGGT------------------C------C---------------------GGTGAT---------------CGGTGGCAACGATG---GAGATAT---TAC-AG--AGCGCGGACGTCAGTGGTTTTT--ATTTTCATCATTTTA---CTTATTTACTT------------------------TTCAACA--TTTTAATTCGTT------------------------TAT----ATTTA--------------------TTTATGTTGT-----------CT--TGTGT-TAT-------------------------T--GTACACCATA----------------------------------------------------------TATATTTAGTTCACTGTGTTGTTT----------------------------------------------A---T--------------------------------------------------------------------------------------------------------TT-GTAAA--------------------------------------------------------------------GC
droYak3	2R:11901413-11901623 +		CGATGGT------------------C------C---------------------GCGGAT---------------CGGTGGCAACGATG---GAGATAT---TAC-AG--AGCGCGGACGTCAGTGGTTTTT--ATTTTCATCATTTTA---CATACTTACTT------------------------TTCTACC--TTTTATTTCTTT------------------------TAT----ATTTA-----------------TTGTTTATGTAGT-----------TA--TGTGT-TAC-------------------------T--GTACACCACA------------TA--------------------------------------------CTTTTTTAGTTCACTGTGTTGTTT-------------------------------------------------TTATTGCACA------------------------------------------------------TCATTT----TATTGTTTGA----------------------TT-GTAAA--------------------------------------------------------------------GC
droEug1	scf7180000409474:656386-656584 +		CGGTGGT------------------C------C---------------------GAGGAT---------------CGGTGGCAACGATG---GCGATAT---TAC-AG--AGCGCGAACGTCAGTGGCTTTT--ATTTTCCCTTATTTA---TTTTTG------------------------------------TGTTTATTTTTGTT------------------------TAT--TTATTTA------------------------TTT--ATTTGTTG--------------------------CTTTCACTT---------------------------------------------------------------------------------------------------------------------------------------------------------------CA------------------------------------------------------TTTGTT----TGTTGTCCTT--TTCGTC--CT-TGCACTTTTCT-GTAAAAACCAAAAATATTT--AT-TTG-----T-------------------ATCTTAA--------------CT
droBia1	scf7180000302143:1114294-1114545 +		CGGTGGT------------------C------C---------------------CAGAAT---------------CGGTGGCAACGATG---GAGATAT---TAC-AG--AGCGCGGACGTCAGTGGTTTTT--ATTTTCACCATTTTA---CTTTATTACTT------------------------TTCATTA--CACTATTTGGTT------------------------TAC----ATTTG--------------------TTTATCTAGT-----------TT--TGTGT-TCTGTT--ACACCT-----------CC--------ACCATA----------------------------------------------------------TTTGTTTAATTTCCTCTCCCGTTT-------------------------------------------------TTACTGCACA------------------------------------------------------TCATTT----TGTTGTCCTT--CTTGTC--CT-TGCACTACTTT-TTAAAA-AGAAATAT--CT---------------------------------TTTTTAACC-----T----TTAT
droTak1	scf7180000415722:186804-187058 -		GGGTGGC------------------C------C---------------------GCGAAT---------------CGGTGGCAACGATG---GAGATGT---TAC-AG--AGCGCGAACGTCAGTGGTTTTT--ATGTTCACCATTTTA---CTTTTTTACCT------------------------TTCATTA--TTTTACTTGGTT------------------------TAT----ATTTA--------------------TTTATCTAGT-----------TT--TGTGT-TTCGTT--ATACCT-----------TT--------ACCATA----------------------------------------------------------CTT-TTTAATTCCCTCTGTTTATT----------------------------------------------TTTGTATTGCACA------------------------------------------------------TCATTT----GGTTGTCTTT--TTAGTC--CT-TGCACTAGTCT-GTAAAA-AAAA-GAT--GT---------------------------------ATTTTAACT-----CTTATTG--
droEle1	scf7180000491232:80455-80709 +		TGATGGT------------------C------A---------------------TAGAAT---------------CGGTGGCAACGATG---GAGATAT---TAC-AG--AGCGCGGACGTCAGTGGTTTTT--ATTTTTACCATTTT----CTTTCTTACTT------------------------CTCATTA--TTTTATTTGGTT-------TTGTTTATATATATTTATAT----ATTTA--------------------TTTATGTAGT-----------TT--TGTGT-TTTGTT--GTGCCTTTTGCTTA---CC--------ACCATA----------------------------------------------------------TTTGTTT----TAC-----TGTCT-------------------------------------------------TTATTGCACA------------------------------------------------------TCATTTA---TGTTGTCT-T--TGAGTC--CT-GGCACTGAGCT-A-----------------T---------------------------------ATCTTTACT-----TATTT--TG
droRho1	scf7180000780265:73672-73924 +		TGATGGT------------------C------C---------------------AGCAAT---------------TGGTGGCACCGATG---GAGATAT---TAC-AG--AGCGCGAACGTCAGTGGTTTTT--ATTTTCACCATTTT----CTTTCTTTCTT------------------------CTCATTA--TTTTATTTGTTT------------------------TTT--GTATTTA--------------------TTTGTGTAGT-----------AT--TGTGT-TTGGTT--GTACCTTTTGCTT--------------ACCATA----------------------------------------------------------TTTGTTTAAT---------TGTCT-------------------------------------------------TTATTGCACT------------------------------------------------------TCATTTC---TGTGGTCTTT--TAAGTCCCCT-GGCGCTGCTTT-GTAAAA-AAAAAGATATCT---------------------------------ATATTTAC----------TTGTT
droFic1	scf7180000453201:287648-287905 +		TGTTGTT------------------C------C---------------------GAGAAT---------------CGGTGGCAACGATG---GAGATAT---TAC-AG--AGCGCGGACGTCAGTGGTTTTT--ATTTTTACCATTTTATTATTTTCTTACTT-CTTTTTA----------------CTCATTA--TTATATTTGGTC------------------------CTT----ATTTC--------------------TATATGTAGT-----------TT--TGTGT-TTCATTTTGTGTGCTTTGCTT--------------TCTATA----------------------------------------------------------A----TTTATTCCCTGTGTTGTTT--------------------------------------------------GATTGCACA------------------------------------------------------ATATTTA---TG-TGTGTGCTTTA-------C-CGCACCTGTCT-GTACAA-A----AATATTT---------------------------------ACCTTAAC----------TTATT
droKik1	scf7180000302411:531520-531799 -		TGGCAGG------------------A------C---------------------CAGTAC---------------TGGTGGCAACGATG---GAGATATCATTAC-AG--AGCGCGGACGTCAGTGGTTTTT--ATTTTTAACCTTATA---CTTTCTTACTT------------------------GTTACTC--TCTGATTTCTTTCACCTTTCAGTT------------TAT----AT--G--------------------TTTGTGTAGT-----------TT--TGTGT-TTTATT--ACTGCCTTTGCTTA---CC--------ATCACA----------------------------------------------------------TTTATTTAAATCTTTGTGTTGTCC-------------------------------------------------TT-GTGCACA------------------------------------------------------TTATTACTTTTATTATT--T-----GTC--GTAAAAACTGCTTT-GCAAAC-A-AACAAT--GCTTTTTCAGCTCTGCAAT------------------------------TG---TGGT
droAna3	scaffold_13266:5099534-5099822 -		TGGTGGTGCTGTTGATGTCGTTTCTA------CCAGAACTGAA---TTTGATCCCATATTTGG------------CCGTGGCAACGATG---GAAGTTCGAACCC-AG--AGCGCGAACGTCAGTGGTTTTT--ATTTTTACACTTTTA---CTTT-TTACCT------------------------TTCAACG--TCTTTTT-------------------------------T----ATTTA-----------------TT----------ATTTGTGGTTC--------------------------T----TCATTTGT--------TT---GTTCTTATCACATTTATTAC--------------------------------------------CATATCCTTGTGTTGTCC-------------------------------------------------TTTTTGCACCATCCATTGTGTTTAT----------------------------------------------------------T--GGAGTC--CA-GCAACTGCACTTGA-AAA-CCAA-ATTGCTT--AC-CAG---------------------------------C-----AGTGCAGCT
droBip1	scf7180000395751:905588-905840 -		CGACT------------------------------------------TTGGTCCTGTCATTGG------------CCGTGGCAACGATG---GAGGTTCGAACCC-AG--AGCGCGAACGTCAGTGGTTTTT--ATTTTTCAACTTTTA---CTTTTCTTACT---T--------------------TGTATCA--TCTTGTT------------------ATCCAAATCCGTACTTTTATTTA-----------------TT----------ATTTGTTGCTA--------------------------T----T-ATTTGT--------TT---GTTCTTATCACATTTATTAC----------------------------------CATATC-----------CTGTGTTGTCC-------------------------------------------------TTTCTGCACCGTCCTTTGTGTTTTT----------------------------------------------------------T--GGAG-----A-GCAACTGCACC-TA-------------------------------------------------------AAAC-----CCCATTGCT
dp5	3:15556654-15556862 -		--------------------------------------------------------GAAT---------------CGGTGGCAACGATG---GAGACCTCAACAC-AG--AGCGCGGACGTCAGTGGTTTTT--ATTTTTATCCTTTTG---TTTTTGTACTTTCTTTTTGATCATTTGTTTGTATG-------CGTTTGCTTTTGTT------------------------TAT----ATGTA--------------------T--GTTT--T-----------TTTGTGTGTGTTTATT--GGTGCTTTTGCTT----------------------------------------------------------------------------------------------------------------TGCCCTCCTCCTCCTCCGTTCCTC-----------------CATGCG--------------------------------------------------------------------------------------------------------------------ATTC--------------------------------------CTTT-----TGTGTTGTG
droPer2	scaffold_4:3490974-3491190 +		--------------------------------------------------------GAAT---------------CGGTGGCAACGATG---GAGACCTCAACAC-AG--AGCGCGGACGTCAGTGGTTTTT--ATTTTTATCCTTTTG---TTTTTGTACTTTCTTTTTGATCATTTGTTTGTATG-------CGTTTGCTTTTGTT------------------------TAT----ATGTA--------------------T--GTTT--TT----------TTTGTGTGT-TTTATT--GGTGCTTTTGCTT----------------------------------------------------------------------------------------------------------------TGCCCT---CCTCCTCCGTCCCTCCATGCGATTCCTTTTG-------------------------------------------------------------------------TGTTGTGT--------CC--CC-CGC---------------------------------------------------------------------------------ATA
droWil2	scf2_1100000004510:1563562-1563815 -		CACCAAA------------------A------T------TGAAAAGCCTGGCCAAGGACATGGCCATGATGATGATGATGGCGATGATA---GTGGCAA---CTC-AG--AG------CGTCAGTGGTTTTT--ATTTTTTACAAATTT---CTTTC---------------------------------------TATCATTTGGTT------------------------TAT----CC---------------------------------------------------------------GTCCCTCCACCA----------------------------------------------------------------------------------------------------------------CCCCCA---CAC---------------------------CC-----ACAGCCCCTCATTCCCTCTAAAGAACAACACCTCCCCTTCACCTTTATTATTATTTTTCTTTT----TGTTCTTT--------------------TGCTAT-ATAACT-ACATACATATTT---------------------------------------ATA-----TATATATTT
droVir3	scaffold_12875:17968676-17968903 +	dvi_7616	TGTCTAC------------------A------C---------------------AGAGAT---------------CAGTGTCAACAAGG---ATGTGACCCACAC-AG--CCGGCGGATGTCAGTGGTTCTTTCATTTTGA---TTTTG---TTTATTTG----------------------------ACATCT--TCTTCTT------------------ATTCTTC---TTGT----TTTTC----TGT-------------TGTATTTTAT-----------TG--TGTTT-TAC-------------------------TTTGTAT-TCACA------------TA--------------------------------------------TCCTTTGTGCTTTTTGCTTTGTTA-------------------------------------------------TCGTTGCGTT------------------------------------------------------TCCTTT----TGTT---TAT--CTTG----------------CT-T-------T----ATACAT--------------------------------------TGTT-----GCTTTTGTC
droMoj3	scaffold_6496:11596792-11597033 +		G-ATGGA------------------CTCTACAC---------------------GGAGAT---------------CAGTGTCAACAAGG---ATGTGACACACCC-AG--CCGGCGGATGTCAGTGGTTCTTCCATTATTATTATTTTG---TTTATTTGTTT-------------------------GTG-----TTTCC------------------------CTC---TTAT----ATTTC------------------------TGTTGT----------------GTGC------C---------T----TCTTTTT--------TTT---ATGTTTTT------TAGTTTGTTATCCTTGTTTGTATTTCCTTTCATTCTTCTGTATATC-----------TTGTGTTTGGTGACTGTCCTTTGTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------CATCCTT--------------------------------------TGTT-----GCTATTGTC
droGri2	scaffold_15245:13725752-13726010 -		ATACGG--------------------------------------------------AGAT---------------CATTGCCGAGAACGAAGACGACAT---TCACAGCCGCATCTTGCGTCAGTTTTTT-T--ATT------CTTTTA---TT-------------------------------------------------CATTT------------------------TGT----ATTCTATTCTATTCTATTCTAT---TCT-GTT--ATTTTTTGTACT-----------TTGTC--TTACGT-----------TT--------ATT---GTGCTTTTTGCATTTGCTTT----------------------------------------------------------GTTA-------------------------------------------------TCGTGGCGTT------------------------------------------------------TCCTTT----CCTT---CC---------------------TTTT-G-GATA-CTAAACAT--CCTTTTTCATTTATTGTATTATGTTTTGTGGCGTTATTTTTATTTGTTTTTTAGGCAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CGATGGT------------------C------C---------------------GCGGAT---------------CGGTGGCAACGATG---GAGATAT---TAC-AG--AGCGCGGACGTCAGTGGTTTTT--ATTTTCATCATTTTA---CTTACTTACTT------------------------TCCAACA--TATTATTTCGTT------------------------TAT----ATTTA--------------------TTTATGTAGT-----------CC--TGTGT-TAT-------------------------T--GTACACCACA----------------------------------------------------------CAATTTTAGTTCACTGTGTTGTTT----------------------------------------------TTATTATTGCACA------------------------------------------------------TCCTTT----TGTTGTTTAT--TTCGTC--CT-TGCACTGCTTT-GTAAAG-CAAAGTATATTT--------------------------------------AGTT-----TGTGTTGTT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAT--TTCGTC--CT-TGCACTG................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................ATG---GAGATAT---TAC-AG--AGCGCGGACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................GATG---GAGATAT---TAC-AG--AGCGCGGACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CGATGGT------------------C------C---------------------GCGGAT---------------CGGTGGCAACGATG---GAGATAT---TAC-AG--AGCGCGGACGTCAGTGGTTTTT--ATTTTCATCATTTTA---CTTACTTACTT------------------------TTCAACA--TATTATTTCGTT------------------------TAT----ATTTA--------------------TTTATGTAGT-----------CC--TGTGT-TAT-------------------------T--GTATACCATA----------------------------------------------------------CAATTTTAGTTCACTGTGTTGTTT----------------------------------------------TTATTGTTGCACA------------------------------------------------------TCCTTT----TGTTGTTTAT--TTCGTC--CT-TGCACTGCATT-GTAAAG-CAAAGTATATTT--------------------------------------AGTT-----TGTGTTG--	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....GT------------------C------C---------------------GCGGAT---------------CGGTGGCAACGATG---GA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0

dm3

CGATGGT------------------C------C---------------------GCGGAT---------------CGGTGGCAACGATG---GAGATAT---TAC-AG--AGCGCGGACGTCAGTGGTTTTT--ATTTTCATCATTTAA---CTTACTTACTT------------------------TTCAACA--TTTTATTTCGTT------------------------TAT----ATTTA--------------------TTTATGTAGT-----------CT--TGTGT-TAT--T--AT------------------T--GTACACGATA----------------------------------------------------------CAGT---------TTGTGTTGTTT----------------------------------------------TTATTATTGCACA------------------------------------------------------TCCTTT----TGTTGTTTAT--TTGGTC--CT-TGCACTGCTTT-CTAAAG-CAAAGTATATTT--------------------------------------AGTT-----TGTGTTGTT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......T------------------C------C---------------------GCGGAT---------------CGGTGGCAACGATG---GA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................GGAT---------------CGGTGGCAACGATG---GAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4
....GGT------------------C------C---------------------GCGGAT---------------CGGTGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GATGGT------------------C------C---------------------GCGGAT---------------CGGTGGCAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................GATAT---TAC-AG--AGCGCGGACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................GCGGACGTCAGTGGTTTTT--A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................GCAACGATG---GAGATAT---TAC-AG--AGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................AT----ATTTA--------------------TTTATGTAGT-----------CT--..........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................GATAT---TAC-AG--AGCGCGGACGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CGATGGT------------------C------C---------------------GCGGAT---------------CGGTGGCAACGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................AACGATG---GAGATAT---TAC-AG--AGCGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................GATG---GAGATAT---TAC-AG--AGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....GT------------------C------C---------------------GCGGAT---------------CGGTGGCAACGATG---GAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
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.GATGGT------------------C------C---------------------GCGGAT---------------CGGTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................................................CAACGATG---GAGATAT---TAC-AG--A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................AC-AG--AGCGCGGACGTCAGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....GGT------------------C------C---------------------GCGGAT---------------CGGTGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................ATG---GAGATAT---TAC-AG--AGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TGGT------------------C------C---------------------GCGGAT---------------CGGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................GATG---GAGATAT---TAC-AG--AGCGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
CGATGGT------------------C------C---------------------GCGGAT---------------CGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CGATGGT------------------C------C---------------------GCGGAT---------------CGGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TATGTAGT-----------CT--TGTGT-TAT--T--AT------------------........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................ATGTAGT-----------CT--TGTGT-TAT--T--AT------------------T--.....................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TGGT------------------C------C---------------------GCGGAT---------------CGGTGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CGATGGT------------------C------C---------------------GGTGAT---------------CGGTGGCAACGATG---GAGATAT---TAC-AG--AGCGCGGACGTCAGTGGTTTTT--ATTTTCATCATTTTA---CTTATTTACTT------------------------TTCAACA--TTTTAATTCGTT------------------------TAT----ATTTA--------------------TTTATGTTGT-----------CT--TGTGT-TAT-------------------------T--GTACACCATA----------------------------------------------------------TATATTTAGTTCACTGTGTTGTTT----------------------------------------------A---T--------------------------------------------------------------------------------------------------------TT-GTAAA--------------------------------------------------------------------GC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
CGATGGT------------------C------C---------------------GGTGAT---------------CGGTGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	0	0	0	0	0	0	5
......................................................GGTGAT---------------CGGTGGCAACGATG---GAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	2	0	0
CGATGGT------------------C------C---------------------GGTGAT---------------CGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.................................................................................CAACGATG---GAGATAT---TAC-A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.GATGGT------------------C------C---------------------GGTGAT---------------CGGTGGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...............................................................................GGCAACGATG---GAGATAT---TAC-AG--AGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
....................................................................................CGATG---GAGATAT---TAC-AG--AGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0

droYak3

CGATGGT------------------C------C---------------------GCGGAT---------------CGGTGGCAACGATG---GAGATAT---TAC-AG--AGCGCGGACGTCAGTGGTTTTT--ATTTTCATCATTTTA---CATACTTACTT------------------------TTCTACC--TTTTATTTCTTT------------------------TAT----ATTTA-----------------TTGTTTATGTAGT-----------TA--TGTGT-TAC-------------------------T--GTACACCACA------------TA--------------------------------------------CTTTTTTAGTTCACTGTGTTGTTT-------------------------------------------------TTATTGCACA------------------------------------------------------TCATTT----TATTGTTTGA----------------------TT-GTAAA--------------------------------------------------------------------GC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
CGATGGT------------------C------C---------------------GCGGAT---------------CGGTGGCAACGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4
.........................C------C---------------------GCGGAT---------------CGGTGGCAACGATG---GAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................CAACGATG---GAGATAT---TAC-AG--AGCGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................GGCAACGATG---GAGATAT---TAC-AG--AGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................AACGATG---GAGATAT---TAC-AG--AGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

CGGTGGT------------------C------C---------------------GAGGAT---------------CGGTGGCAACGATG---GCGATAT---TAC-AG--AGCGCGAACGTCAGTGGCTTTT--ATTTTCCCTTATTTA---TTTTTG------------------------------------TGTTTATTTTTGTT------------------------TAT--TTATTTA------------------------TTT--ATTTGTTG--------------------------CTTTCACTT---------------------------------------------------------------------------------------------------------------------------------------------------------------CA------------------------------------------------------TTTGTT----TGTTGTCCTT--TTCGTC--CT-TGCACTTTTCT-GTAAAAACCAAAAATATTT--AT-TTG-----T-------------------ATCTTAA--------------CT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGGTGGT------------------C------C---------------------CAGAAT---------------CGGTGGCAACGATG---GAGATAT---TAC-AG--AGCGCGGACGTCAGTGGTTTTT--ATTTTCACCATTTTA---CTTTATTACTT------------------------TTCATTA--CACTATTTGGTT------------------------TAC----ATTTG--------------------TTTATCTAGT-----------TT--TGTGT-TCTGTT--ACACCT-----------CC--------ACCATA----------------------------------------------------------TTTGTTTAATTTCCTCTCCCGTTT-------------------------------------------------TTACTGCACA------------------------------------------------------TCATTT----TGTTGTCCTT--CTTGTC--CT-TGCACTACTTT-TTAAAA-AGAAATAT--CT---------------------------------TTTTTAACC-----T----TTAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGGTGGC------------------C------C---------------------GCGAAT---------------CGGTGGCAACGATG---GAGATGT---TAC-AG--AGCGCGAACGTCAGTGGTTTTT--ATGTTCACCATTTTA---CTTTTTTACCT------------------------TTCATTA--TTTTACTTGGTT------------------------TAT----ATTTA--------------------TTTATCTAGT-----------TT--TGTGT-TTCGTT--ATACCT-----------TT--------ACCATA----------------------------------------------------------CTT-TTTAATTCCCTCTGTTTATT----------------------------------------------TTTGTATTGCACA------------------------------------------------------TCATTT----GGTTGTCTTT--TTAGTC--CT-TGCACTAGTCT-GTAAAA-AAAA-GAT--GT---------------------------------ATTTTAACT-----CTTATTG--	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGATGGT------------------C------A---------------------TAGAAT---------------CGGTGGCAACGATG---GAGATAT---TAC-AG--AGCGCGGACGTCAGTGGTTTTT--ATTTTTACCATTTT----CTTTCTTACTT------------------------CTCATTA--TTTTATTTGGTT-------TTGTTTATATATATTTATAT----ATTTA--------------------TTTATGTAGT-----------TT--TGTGT-TTTGTT--GTGCCTTTTGCTTA---CC--------ACCATA----------------------------------------------------------TTTGTTT----TAC-----TGTCT-------------------------------------------------TTATTGCACA------------------------------------------------------TCATTTA---TGTTGTCT-T--TGAGTC--CT-GGCACTGAGCT-A-----------------T---------------------------------ATCTTTACT-----TATTT--TG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGATGGT------------------C------C---------------------AGCAAT---------------TGGTGGCACCGATG---GAGATAT---TAC-AG--AGCGCGAACGTCAGTGGTTTTT--ATTTTCACCATTTT----CTTTCTTTCTT------------------------CTCATTA--TTTTATTTGTTT------------------------TTT--GTATTTA--------------------TTTGTGTAGT-----------AT--TGTGT-TTGGTT--GTACCTTTTGCTT--------------ACCATA----------------------------------------------------------TTTGTTTAAT---------TGTCT-------------------------------------------------TTATTGCACT------------------------------------------------------TCATTTC---TGTGGTCTTT--TAAGTCCCCT-GGCGCTGCTTT-GTAAAA-AAAAAGATATCT---------------------------------ATATTTAC----------TTGTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGTTGTT------------------C------C---------------------GAGAAT---------------CGGTGGCAACGATG---GAGATAT---TAC-AG--AGCGCGGACGTCAGTGGTTTTT--ATTTTTACCATTTTATTATTTTCTTACTT-CTTTTTA----------------CTCATTA--TTATATTTGGTC------------------------CTT----ATTTC--------------------TATATGTAGT-----------TT--TGTGT-TTCATTTTGTGTGCTTTGCTT--------------TCTATA----------------------------------------------------------A----TTTATTCCCTGTGTTGTTT--------------------------------------------------GATTGCACA------------------------------------------------------ATATTTA---TG-TGTGTGCTTTA-------C-CGCACCTGTCT-GTACAA-A----AATATTT---------------------------------ACCTTAAC----------TTATT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGGCAGG------------------A------C---------------------CAGTAC---------------TGGTGGCAACGATG---GAGATATCATTAC-AG--AGCGCGGACGTCAGTGGTTTTT--ATTTTTAACCTTATA---CTTTCTTACTT------------------------GTTACTC--TCTGATTTCTTTCACCTTTCAGTT------------TAT----AT--G--------------------TTTGTGTAGT-----------TT--TGTGT-TTTATT--ACTGCCTTTGCTTA---CC--------ATCACA----------------------------------------------------------TTTATTTAAATCTTTGTGTTGTCC-------------------------------------------------TT-GTGCACA------------------------------------------------------TTATTACTTTTATTATT--T-----GTC--GTAAAAACTGCTTT-GCAAAC-A-AACAAT--GCTTTTTCAGCTCTGCAAT------------------------------TG---TGGT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TGGTGGTGCTGTTGATGTCGTTTCTA------CCAGAACTGAA---TTTGATCCCATATTTGG------------CCGTGGCAACGATG---GAAGTTCGAACCC-AG--AGCGCGAACGTCAGTGGTTTTT--ATTTTTACACTTTTA---CTTT-TTACCT------------------------TTCAACG--TCTTTTT-------------------------------T----ATTTA-----------------TT----------ATTTGTGGTTC--------------------------T----TCATTTGT--------TT---GTTCTTATCACATTTATTAC--------------------------------------------CATATCCTTGTGTTGTCC-------------------------------------------------TTTTTGCACCATCCATTGTGTTTAT----------------------------------------------------------T--GGAGTC--CA-GCAACTGCACTTGA-AAA-CCAA-ATTGCTT--AC-CAG---------------------------------C-----AGTGCAGCT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................................GATCCCATATTTGG------------CCGTGGCAACGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
..........................................A---TTTGATCCCATATTTGG------------CCGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..............................................TTTGATCCCATATTTGG------------CCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGTGTTGTCC-------------------------------------------------TTTTTGCACCATC...........................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0

droBip1

CGACT------------------------------------------TTGGTCCTGTCATTGG------------CCGTGGCAACGATG---GAGGTTCGAACCC-AG--AGCGCGAACGTCAGTGGTTTTT--ATTTTTCAACTTTTA---CTTTTCTTACT---T--------------------TGTATCA--TCTTGTT------------------ATCCAAATCCGTACTTTTATTTA-----------------TT----------ATTTGTTGCTA--------------------------T----T-ATTTGT--------TT---GTTCTTATCACATTTATTAC----------------------------------CATATC-----------CTGTGTTGTCC-------------------------------------------------TTTCTGCACCGTCCTTTGTGTTTTT----------------------------------------------------------T--GGAG-----A-GCAACTGCACC-TA-------------------------------------------------------AAAC-----CCCATTGCT	Size	Hit Count	Total Norm	Total
No Reads

dp5

--------------------------------------------------------GAAT---------------CGGTGGCAACGATG---GAGACCTCAACAC-AG--AGCGCGGACGTCAGTGGTTTTT--ATTTTTATCCTTTTG---TTTTTGTACTTTCTTTTTGATCATTTGTTTGTATG-------CGTTTGCTTTTGTT------------------------TAT----ATGTA--------------------T--GTTT--T-----------TTTGTGTGTGTTTATT--GGTGCTTTTGCTT----------------------------------------------------------------------------------------------------------------TGCCCTCCTCCTCCTCCGTTCCTC-----------------CATGCG--------------------------------------------------------------------------------------------------------------------ATTC--------------------------------------CTTT-----TGTGTTGTG

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

--------------------------------------------------------GAAT---------------CGGTGGCAACGATG---GAGACCTCAACAC-AG--AGCGCGGACGTCAGTGGTTTTT--ATTTTTATCCTTTTG---TTTTTGTACTTTCTTTTTGATCATTTGTTTGTATG-------CGTTTGCTTTTGTT------------------------TAT----ATGTA--------------------T--GTTT--TT----------TTTGTGTGT-TTTATT--GGTGCTTTTGCTT----------------------------------------------------------------------------------------------------------------TGCCCT---CCTCCTCCGTCCCTCCATGCGATTCCTTTTG-------------------------------------------------------------------------TGTTGTGT--------CC--CC-CGC---------------------------------------------------------------------------------ATA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

CACCAAA------------------A------T------TGAAAAGCCTGGCCAAGGACATGGCCATGATGATGATGATGGCGATGATA---GTGGCAA---CTC-AG--AG------CGTCAGTGGTTTTT--ATTTTTTACAAATTT---CTTTC---------------------------------------TATCATTTGGTT------------------------TAT----CC---------------------------------------------------------------GTCCCTCCACCA----------------------------------------------------------------------------------------------------------------CCCCCA---CAC---------------------------CC-----ACAGCCCCTCATTCCCTCTAAAGAACAACACCTCCCCTTCACCTTTATTATTATTTTTCTTTT----TGTTCTTT--------------------TGCTAT-ATAACT-ACATACATATTT---------------------------------------ATA-----TATATATTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................................................CATGATGATGATGATGGCGATGATA---GT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
...................................................................GATGATGATGATGGCGATGATA---GTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
.........................................................................GATGATGGCGATGATA---GTGGCAA---CT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1
.........................A------T------TGAAAAGCCTGGCCAAGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1
.....................................................................................GATA---GTGGCAA---CTC-AG--AG------CGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
......................................................................GATGATGATGGCGATGATA---GTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...................................................................GATGATGATGATGGCGATGATA---GT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.................................................................................CGATGATA---GTGGCAA---CTC-AG--.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
............................................................................GATGGCGATGATA---GTGGCAA---CT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.....................................................................................GATA---GTGGCAA---CTC-AG--AG------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
..................................................................................GATGATA---GTGGCAA---CTC-AG--AG------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
...CAAA------------------A------T------TGAAAAGCCTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
............................................................................GATGGCGATGATA---GTGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
................................................................CATGATGATGATGATGGCGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	1	0	0
........................................................................TGATGATGGCGATGATA---GT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	1	0	0
...................................................................GATGATGATGATGGCGATGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	1	1	0
.................................................................ATGATGATGATGATGGCGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
.................................................................ATGATGATGATGATGGCGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0

droVir3

TGTCTAC------------------A------C---------------------AGAGAT---------------CAGTGTCAACAAGG---ATGTGACCCACAC-AG--CCGGCGGATGTCAGTGGTTCTTTCATTTTGA---TTTTG---TTTATTTG----------------------------ACATCT--TCTTCTT------------------ATTCTTC---TTGT----TTTTC----TGT-------------TGTATTTTAT-----------TG--TGTTT-TAC-------------------------TTTGTAT-TCACA------------TA--------------------------------------------TCCTTTGTGCTTTTTGCTTTGTTA-------------------------------------------------TCGTTGCGTT------------------------------------------------------TCCTTT----TGTT---TAT--CTTG----------------CT-T-------T----ATACAT--------------------------------------TGTT-----GCTTTTGTC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................................................TTTG----------------------------ACATCT--TCTTCTT------------------ATTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................GG---ATGTGACCCACAC-AG--CC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GTCTAC------------------A------C---------------------AGAGAT---------------CAGTGTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................AGAT---------------CAGTGTCAACAAGG---A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................CAGTGTCAACAAGG---ATGTGACCCACAC-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GTCTAC------------------A------C---------------------AGAGAT---------------CAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

G-ATGGA------------------CTCTACAC---------------------GGAGAT---------------CAGTGTCAACAAGG---ATGTGACACACCC-AG--CCGGCGGATGTCAGTGGTTCTTCCATTATTATTATTTTG---TTTATTTGTTT-------------------------GTG-----TTTCC------------------------CTC---TTAT----ATTTC------------------------TGTTGT----------------GTGC------C---------T----TCTTTTT--------TTT---ATGTTTTT------TAGTTTGTTATCCTTGTTTGTATTTCCTTTCATTCTTCTGTATATC-----------TTGTGTTTGGTGACTGTCCTTTGTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------CATCCTT--------------------------------------TGTT-----GCTATTGTC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................AACAAGG---ATGTGACACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................TTAT----ATTTC------------------------TGTTGT----------------GTGC------C---------T----T...............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0

droGri2

ATACGG--------------------------------------------------AGAT---------------CATTGCCGAGAACGAAGACGACAT---TCACAGCCGCATCTTGCGTCAGTTTTTT-T--ATT------CTTTTA---TT-------------------------------------------------CATTT------------------------TGT----ATTCTATTCTATTCTATTCTAT---TCT-GTT--ATTTTTTGTACT-----------TTGTC--TTACGT-----------TT--------ATT---GTGCTTTTTGCATTTGCTTT----------------------------------------------------------GTTA-------------------------------------------------TCGTGGCGTT------------------------------------------------------TCCTTT----CCTT---CC---------------------TTTT-G-GATA-CTAAACAT--CCTTTTTCATTTATTGTATTATGTTTTGTGGCGTTATTTTTATTTGTTTTTTAGGCAC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..ACGG--------------------------------------------------AGAT---------------CATTGCCGAGAACGAAGACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1
..................................................................................GAGAACGAAGACGACAT---TCACAGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0
................................................................................CCGAGAACGAAGACGACAT---TCACAGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0
ATACGG--------------------------------------------------AGAT---------------CATTGCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
.TACGG--------------------------------------------------AGAT---------------CATTGCCGAGAACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1
.......................................................................................................CACAGCCGCATCTTGCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	1	0

dsi_5647

2r:17840132-17840281 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads