ID:

dsi_5645

 Coordinate:

3l:15231167-15231316 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.0 -3.7 -3.7

Flybase annnotation

CDS [3l_15231317_15231338_+]; three_prime_UTR [3l_15231339_15233679_+]; exon [3l_15231317_15233679_+]; intron [3l_15230419_15231316_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCAGCAGCAACAACCACAGCCAACCAGAGTAGTAAGCCATATATAACACATCAAGAAAGCGCCTCAACCACAAACAACACCAACATTTACTTGCTCTACTACTCCCAGACCTCCGAATGAAACAAATGAACTCATCAGCAATATTATTTCTCCTCTTTTTTCTTTTTTTGACCCAACCCTATGTCCGAACCCGATTTTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCAGCC
**************************************************(((((((((........................((......)).............(((.....((((((......(((.....)))......))))))....)))......))))))))).............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
..............................................................................................................................TGAACTCATCAGCAATATTATTTCT................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................TAATTCTCCTCCTTTTTTTTTTTTTGA............................................................................... 27 3 2 0.50 1 0 1 0 0 0
...............................................................................................................................................................................ACCGTATGACCGTACCCGA........................................................ 19 3 2 0.50 1 0 0 1 0 0
.........................................................................................................................................................................GCCCCAACGCTACGTCCG............................................................... 18 3 19 0.11 2 0 0 0 2 0
.......................................................................................................................................................................................................................................GTCCATTCGGTATGCCGA. 18 3 20 0.05 1 0 0 0 1 0
................................................................................................................................................................................................................................ACGCCAAGTCCATTCATTA....... 19 3 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

CGTCGTCGTTGTTGGTGTCGGTTGGTCTCATCATTCGGTATATATTGTGTAGTTCTTTCGCGGAGTTGGTGTTTGTTGTGGTTGTAAATGAACGAGATGATGAGGGTCTGGAGGCTTACTTTGTTTACTTGAGTAGTCGTTATAATAAAGAGGAGAAAAAAGAAAAAAACTGGGTTGGGATACAGGCTTGGGCTAAAATCAACCGTTGTAGGCAAACTCATTGTCGCGGCTCAGGTAAGTCATACGTCGG
**************************************************(((((((((........................((......)).............(((.....((((((......(((.....)))......))))))....)))......))))))))).............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 O002
Head
 M053
female body
 GSM343915
embryo
 M024
male body		 M025
embryo
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR1275485
Male prepupae		 SRR1275483
Male prepupae
..............................................................GAGTTGGTGAATGTTGTGG......................................................................................................................................................................... 19 2 2 2232.50 4465 3264 816 274 59 3 6 21 4 11 4 3 0 0 0 0
.............................................................CGAGTTGGTGAATGTTGTGG......................................................................................................................................................................... 20 3 7 2121.29 14849 7968 1488 3564 704 567 341 104 94 1 1 0 13 0 3 1
...............................................................AGTTGGTGAATGTTGTGG......................................................................................................................................................................... 18 2 5 863.60 4318 3430 784 47 27 5 5 6 2 5 2 2 0 3 0 0
.............................................................GGAGTTGGTGAATGTTGTGGA........................................................................................................................................................................ 21 3 2 46.50 93 0 0 24 58 9 2 0 0 0 0 0 0 0 0 0
.............................................................GGAGTTGGTGAATGTTGTGG......................................................................................................................................................................... 20 2 1 34.00 34 0 0 0 26 5 3 0 0 0 0 0 0 0 0 0
.............................................................GGAGTTGGTGAATGTTGTG.......................................................................................................................................................................... 19 2 3 10.33 31 0 0 0 24 4 3 0 0 0 0 0 0 0 0 0
.............................................................CGAGTTGGTGAATGTTGTGGT........................................................................................................................................................................ 21 3 2 9.50 19 0 0 18 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................GAGTTGGTGAATGTTGTGGT........................................................................................................................................................................ 20 2 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................CGAGTTGGTGACTGTTGTGG......................................................................................................................................................................... 20 3 10 1.50 15 0 0 15 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................CGAGTTGGTGTATGTTGTGG......................................................................................................................................................................... 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................CGAGTTGGTGATTGTTGTGGA........................................................................................................................................................................ 21 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AGTTGGTGTATGTTGTGG......................................................................................................................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................AGGAGTTGGTGAATGTTGTGGT........................................................................................................................................................................ 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TTGTCGCGGCTCAGGTAAGTC......... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................CGAGTTGGTGTATGTTGTGGA........................................................................................................................................................................ 21 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................GGGTCTGGAGGCTTACTTTGT.............................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................CGCCGAGTTGGTGAATGTTGTG.......................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................GCCGAGTTGGTGAATGTTGTGG......................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................CGGAGTTGGTGAATGTTGTGG......................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................CCGAGTTGGTGAATGTTGTGG......................................................................................................................................................................... 21 3 2 1.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................CCGAGTTGGTGAATGTTGTG.......................................................................................................................................................................... 20 3 6 1.00 6 0 0 1 5 0 0 0 0 0 0 0 0 0 0 0
..............................................................GAGTTGGTGATTGTTGTG.......................................................................................................................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................GAGTTGGTGAATGTTGTGGTA....................................................................................................................................................................... 21 3 2 1.00 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................GGTTGTAAATGAACGAGATGGT..................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................AGGCTTACTTTGTTTACTTGA...................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................CGAGTTGGTGCATGTTGTG.......................................................................................................................................................................... 19 3 14 0.79 11 0 0 11 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................AGAGTTGGTGAATGTTGTGG......................................................................................................................................................................... 20 3 10 0.70 7 0 0 2 4 0 0 0 0 1 0 0 0 0 0 0
.............................................................GGAGTTGGTGAATGTTGTGGAT....................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................GAGTTGGTGCATGTTGTGGA........................................................................................................................................................................ 20 3 4 0.50 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CGCAGGTGTTTGTTGTGGTTGT..................................................................................................................................................................... 22 3 4 0.50 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
..................................................................................................................................................................AAAAGAACCGGGTTGGGATA.................................................................... 20 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................AAAAAACAGGCTTGGGAT..................................................................... 18 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................CGAGTTGGTGCATGTTGTGG......................................................................................................................................................................... 20 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TTGGGATAGAGGCTT............................................................. 15 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................CGCCGAGTTGGTGAATGTTG............................................................................................................................................................................ 20 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TTGGTATACAGGCCTGG........................................................... 17 2 10 0.20 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0
..............................................................GAGTTGGTGGATGTTGTGG......................................................................................................................................................................... 19 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................GGAGTTGGTGAATGTTGT........................................................................................................................................................................... 18 2 11 0.18 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................GGGGTTGGTGATTGTTGTGGA........................................................................................................................................................................ 21 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TTGGGATAGAGGCTTGT........................................................... 17 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................TTGTGGTAGTAAATGTATGA........................................................................................................................................................... 20 3 17 0.12 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0
..........................................................................................................................................................................TGGGAGGGGATACAGGCT.............................................................. 18 2 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................AGGAGTTGGTGAATGTTGTG.......................................................................................................................................................................... 20 3 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TTGATGAGGGTCTGTAGGTT...................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................AAATGAGCCGTGGTAGGCA.................................... 19 3 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................GAGTTGGTGAATGTTGTGGG........................................................................................................................................................................ 20 3 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................CGAGTTGGTGGATGTTGTGG......................................................................................................................................................................... 20 3 20 0.10 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................GGAGTTGGTGAATGTAGTGG......................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...CGTCGTTGTTGTTGTAGGTTGTTC............................................................................................................................................................................................................................... 24 3 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........TTGGTGTCGGTTGGTT............................................................................................................................................................................................................................... 16 1 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................GTAGTTGGTGAATGTTGTGG......................................................................................................................................................................... 20 3 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................GAGTTGGTGAGTGTTGTGGA........................................................................................................................................................................ 20 3 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................GGAGTTTGTGAATGTTGTGG......................................................................................................................................................................... 20 3 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................AAAAAACTAGGTTGG........................................................................ 15 1 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................CGAGTTGGTGAGTGTTGTGG......................................................................................................................................................................... 20 3 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CGGCTCAAGTAAGTC......... 15 1 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................TTGGGATCGAGGCTTG............................................................ 16 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................GAGTTGGGGAATGTTGTGG......................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................AAAAAATGAAAAAAGCTGGGT........................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................TAGTTGGTGAATGTTGTGG......................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................AGCGGCTCAGGTAAGAC......... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................AAAAAAACTGGGTCG......................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................GAGCTGGTGAATGTTGTGG......................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:15231117-15231366 + dsi_5645 GC-------AGCAGCAACAACCAC--AGCC------------------A----ACCAGAGTAGTAAGCCATA-----------------------------------------------------------------------TAT------------AACACATCAAGAAAGCGCC-TC-A-------------------ACCAC---AA---A---------------------CAAC-ACCAA--CATTTACTTGCTCTACTACTCCC------AGACCTCC---GAA-------T--GAAAC-A--AA-TGAACTCATC----------------------------------------AGCA--AT--ATTA--TTTCTCCTCT---------TTTTTCTTT------TTTTGA----CCCAACCC--TATGT--CC-----------------------------------------------------------------------------------GAA----------------------------CCCG----ATTTTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCAGC---C
droSec2 scaffold_0:7712389-7712640 + GC-------AGCAGCAACAACCAC--AGCA------------------A----ACCAGAGTAGTAAGCCATA-----------------------------------------------------------------------TAT------------AACACATCAAGAAAGCGCC-TC-A-------------------ACCAC---AA---A---------------------CAAC-ACCAA--CATTTATATGCTCTACTACTCCC------AGACCTCC---GAA-------T--GAAAC-A--AA-TGAACTCATC----------------------------------------AGCA--AT--ATTA--TTTCTCCTCTT-------TTTTTTCTTT------TTTTGT----CCCAACCT--TATGT--CC-----------------------------------------------------------------------------------GAA----------------------------CCCG----ATTTTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCAGC---C
dm3 chr3L:15599557-15599808 + GC-------AGCAGCAACAACCAC--AGCA------------------A----ACCAGAGTAGTAAGCCATA-----------------------------------------------------------------------TAT------------AACACATCAAGAAAGCGCC-TC-A-------------------ACCAC---AA---A--------------------ACAAC-ACCAA--CATTTACTTGCTCTACTTCTCCC------AGACCTAC---GAA-------T--GAAAC-A--AA-TGAACTCATC----------------------------------------AGCA--AT--ATTA--TTTCTCCTCT---------TTTTTTT-TCT----TTTTAT----CCCAACCT--TATGT--CC-----------------------------------------------------------------------------------GAA----------------------------CCCG----ATTTTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCAGC---C
droEre2 scaffold_4784:17857803-17858041 + GC-------AGCAGCAACAACCAC--AGCA------------------A----ACGAGAGTAGTAAGCCATA-----------------------------------------------------------------------T--------------A--ACATCAAGAAAGCGCC-TC-A-------------------ACCAC---AA---A--------------------CCAAC-ACCAA--CATTCACTTGCTC---TACTCCC------AGACCTCC---GAA-------T--GAAAC-A--AA-TGAACTCATC----------------------------------------AGCA--AT--ATTA--TTTCTCCTCT---------TT-T----T------CTTTGT----CCCAACCT--TATGT--CC-----------------------------------------------------------------------------------GCA----------------------------CCCG----ATTTTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCAGC---C
droYak3 3L:18146656-18146901 + GC--TCAGCAGCAGCAACAACCAC--AGCA------------------A----ACGAGAGTAGTAAGCCATA-----------------------------------------------------------------------T--------------A--ACATCAAGAAAGCGCC-TC-A-------------------ACCAC---AA---A--------------------CCAAC-ACCAACCAATTCACTTGCTC---TACTCCC------AGACCTCC---GAA-------T--GAAAC-A--AA-TGAACTCATC----------------------------------------AGCA--AT--ATTA--TTTCTCCTCT---------TT-T----T------CTTTGT----CCCAACCC--CATGT--CC-----------------------------------------------------------------------------------GAA----------------------------CCCG----ACTTTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCAGC---C
droEug1 scf7180000408844:331527-331793 + GC-------AGCTGCAACAACCACACAGCA------------------AA--TACAACAGTAGTCAGCCATA-----------------------------------------------------------------------TATAT----------A--ACATCAAGAAAGCGCC-TC-AAACTCGA------------ACCAC---AAGAAA----------AAA----AAACCAAC-ACCAA--CATTTATTTGC-----TACTCCA------AGACCTCA---GAA-AAT---T--GAAAC-A--AAAGTAACTCATC----------------------------------------ATCA--AT--ATTA--TTTCTCCTCT---------TTTT----T------CTTTGT----CCAAACTT--TATGT--CC-----------------------------------------------------------------------------------GAA----------------------------CCCGA---ATTTTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCAGC---C
droBia1 scf7180000302334:787786-788032 - GC-------AGCAGCAACAACCACACAGCA------------------T----TCGGCAGTAGTAAGCCATA-----------------------------------------------------------------------T--------------AACACATCAAGAAAGCGCC-TC-C-------------------ACCAT---AG---A--------------------CCAAC-ACCAA--CATTT-TTTGC-----CACTCCACGACCAAGACCTCC---AGT-------T--GAAAC-C--AA-GTAACTCATC----------------------------------------AGCA--AT--ATTA--TTTTTCCTCT---------TT-T----T------CTTTGT----CCCACA-CTGTATGT--CC-----------------------------------------------------------------------------------GAA----------------------------CCCG----ATTTTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTACGCAGC---G
droTak1 scf7180000412281:88972-89208 + GC-------AGCTGCAACAACC-------------------------------------GTAGTAAGCCATC-----------------------------------------------------------------------CATAT----------A--ACATCAAGAAAGCGAC-TC-A-------------------ACCAC---AA---A--------------------CCAAC-ACCAA--CATTTATTTGC-----CACTCCAAGACC-AGACCTCC---AAT-------T--GAAAC-A--AA-GTAACTCATC----------------------------------------AGCAATAT--ATTA--TTTCTCCTCTC-------TTT-T----T------CTTTAT----CCCTGTTT--TATGT--CC-----------------------------------------------------------------------------------AAA----------------------------CCCG----ATTTTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCGGC---C
droEle1 scf7180000491000:1010487-1010751 + GC-------AGCTGCAACAACCAC--AGCA------------------A----ACAACAGTAGTAAGCCATA-----------------------------------------------------------------CACTCGTAT------------A--ACATCAAGAAAGCGCC-TC-CAGACCAA---------CCAACCAC---AA---A----------CCA----ACACCAAC-ACCAA--CATTTATTTGC-----TACTCCA------CAACCGCC---AAA-A-----T--GAAAC-A--AAAATAACTCATC----------------------------------------AGCA--AT--ATTA--TTTCTCCTCT---------TT-T----T------CTTTGA----CCCGTCTT--TATTC--CC------------------------------------T----------------------------------------------GAA----------------------------CCCGA---ACTTTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCAGC---C
droRho1 scf7180000778741:14750-14983 - GC-------AGCTGCAACAACCAC--AGCA------------------A----ACAACAGTAGTAAGCCATA-----------------------------------------------------------------------TAT------------A--ACATCAAGAAAGCGCC-TCCA-------------------ATCAC---AA---A--------------------CCAAC---CA------TAATTTGC-----TTCTCCA------AGACCTCC---AAA-------T--GAAAC-A--AA-GTAACTCATC----------------------------------------AGCA--AT--ATCA--TTTCTCCTCT---------TT-T----T------CTTTGT----CCCGACTT--TATTC--CC-----------------------------------------------------------------------------------GAT----------------------------CCCG----ACTTTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCAGC---C
droFic1 scf7180000454065:1712016-1712318 - AT-------AACAAAGACAACCAC--AGCA-------GAGAAAAAATAA----ACAACAGTAGTAAGCCACA-----------------------------------------------------------------------TAA--AAGAATATTTA--ACATCAAGAAAGCGCCAAC-A-------------------GCCAC--CAA---ACCAAACCAAACCAAATCAAACCAAC-ACCAA--CATTTATTTGC-----TACTCCA------AGACCTCT---GAA-C-----T--AAAGC-C--AA-TTAACTCATC----------------------------------------AGCA--AT--ATTA--TTTCTCCTCT---------TCTTTTT-TGT-TTTCTTTATTCCGCCCGACTT--TGTGTGTCC---------------------------------CGAT----------------------------------------------GAA---------------------------TCCCG----ATTTTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTACGCAGC---C
droKik1 scf7180000302686:1161420-1161676 - GC-------AGGTGCAACAG---------------------------------------GTAGTAAGCCATAACACCATCAACAAC--------------------------A-ACAACAGCCACAAATG--------------------------------------------------------------------------AC--------------------------------------AA----CTAAACACT-----CAACATTT------AAGAAGCCACCAA-------T--A-A-CCAAAAGTTTAACTCAGCCAGC--------------------------------------CT--ATAATTTA--TTTCTCCTAT---------TTTT----T------CTTTGT----CCCCCA-ATTTATAC--CC-----------------------------------------------------------------------------------GAT-CCCCTCGATGATGATGATGATGATGATGACC----ATTCCAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCTGCAGGC
droAna3 scaffold_13337:11558349-11558581 - GC-------AGCAGCAACAACAA----ACT------------------A----ACAACAATGACAAGACATC-----------------------------------------------------------------------TAC------------AA-------------------------------------------------------------------------------CGACCAA----CTAATTTGC-----TAATTTTTGCC--AAACAGCCCACAAAAAAATAATATGAAA------ATATAACTCATCATGC--------------------------------------CT--AT--ATTA--TTTCTCCTCTT----C--TTTTTTTTTT------CTTTGC----CCCGAT----AAT-----TGAACTCCGCCCCGACC-----------------------------------------------------------------------------------------------------------GTCCAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCAGC---C
droBip1 scf7180000396589:2416688-2416942 + AC-------TAAAAC--------------TAACAACAAAGACCAGTACA----ACTACAATTGTAAGCCATA-----------------------------------------------------------------------TAA--CAGC------CATACAACAAACAAACGCA-AC-A-------------------ATCACCCCAA---A---------------------CAACGACCAA----CTAACTCGC-----TAACCAC------CG-CCCAC---GAA-------T--AT--C-A--AAAATAACTCATCATGC--------------------------------------CT--ATATATTG--TTTCTCCTCT---------TTTTTTTTT------CTTTGGC---CCCGA--T--TAT-----T-----------------------------------------------------------------------------------GAA----------------------------CTCC----AATCCAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCAGC---C
dp5 XR_group6:161131-161344 - GCAATCA-CGGCAGCAACAATCAA--TTCA------------------ATCAT---------------------------------------------------------------------------TACGACGGCAACTTG---------------------------------------CATTGCAACCGCCACA---AGAAC---AA---G---------------------CAAC-A--AT--CTTTTATTTCC-----TG------------------T---CGC-------T--GAATC-A--AACGATACTGATC----------------------------------------AATAA-AT--ATTA--TTT-TCCTCT---------C--T----T------CTCTGT----CCCTGC-----------TG-----------------------------------------------------------------------------------TAA----------------------------CTCG----A--TCAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATACAGTATGCCTC---C
droPer2 scaffold_12:845656-845869 - GCAATCA-CGGCAGCAACAATCAA--ATCA------------------ATCAT---------------------------------------------------------------------------TACGACGGCAACTTG---------------------------------------CATTGCAACCGCCACA---AGAAC---AA---G---------------------CAAC-A--AT--CTTTTATTTCC-----TG------------------T---CGC-------T--GAATC-A--AACGATACTGATC----------------------------------------AATAA-AT--ATTA--TTT-TCCTCT---------C--T----T------CTCTGT----CCCTGC-----------TC-----------------------------------------------------------------------------------TAA----------------------------CTCG----A--TCAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATACAGTATGCCTC---C
droWil2 scf2_1100000004768:184880-184931 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATACAATATGCTGC---A
droVir3 scaffold_13049:22454559-22454845 - dvi_20955 AC-------AACTGTAACAACCAC--AGCC------------------A----C---GA----TTAGCCGAG--------------TCCAACAACCAAACAACCATCCATCCA-ACTAAAACCATAAA-----------------T------------G--ACAACAAGAAAATA--------------------------------------------------------------------------------------------------------------------------------------------AACTTTGCAAGCC-GATTTCTTT--TTGAAGCCCTG-TTTAATTGATGAACAA-AT--T-TTTGTTTTTCGTTT---------CTCT----TCT----TTCGCT----CCCGGC----------------------------CATCCGATGTATATACATATG------------------------CAATACGTAACCTGTGTATATAAA-ATCCA------------------------CACG----AAATTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATACAGTACACAAC---A
droMoj3 scaffold_6680:17056711-17057007 - GC-------TGTACCAACAACCAT--------------------------------------------------------------------------------------CCG-ACTAAAACCATAAATGAAACAACAAAATA---------------------------------------ATATACATTTGATAAA---AAAAA---AA---A---------------------A-------------------------------------------------------------------------AAAACAAC-------GCCCCA-TTCTTTATGTGAAGCCCTGCTCAAATTCATAAACAA-AT--TTTA--TTTTTCGTTT---------TTCT----TCTTT--CTCTCC----CCCTCC------------G--------------CCATCCGATGTGTGTACATATATATATATATATATCCATATGCGATCAATGCGTAACCTGTGTATAT--AAA----------------------------TCCGCATTTAATCAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATACAGTACGCAAC---G
droGri2 scaffold_15121:166434-166686 - CC-------TACAGCAGCAACTAC--AACA-------TG---------A----ACAAAA----TCAGCAG---------------AACCAACAACCAAAC--CAAGCCATCCAAATTACAAACATAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGCA-GCA-GAGTCCCT----------CCCACTTAAACTCAAAAACAA-AT--TATATTTTTTTCGTTTCTCTTCTCTTC-T----T------CTCTCT----CCC----C--CACGC--CA--------------CCATCCAATGTGTATATATAAAT----------------------------------------------ATA---------------------------TATAT----ATATTAGTTGGCAACATCCGTTTAAGTAACAGCGCCGAGTCCATACAATATGCCAC---A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GC-------AGCAGCAACAACCAC--AGCC------------------A----ACCAGAGTAGTAAGCCATA-----------------------------------------------------------------------TAT------------AACACATCAAGAAAGCGCC-TC-A-------------------ACCAC---AA---A---------------------CAAC-ACCAA--CATTTACTTGCTCTACTACTCCC------AGACCTCC---GAA-------T--GAAAC-A--AA-TGAACTCATC----------------------------------------AGCA--AT--ATTA--TTTCTCCTCT---------TTTTTCTTT------TTTTGA----CCCAACCC--TATGT--CC-----------------------------------------------------------------------------------GAA----------------------------CCCG----ATTTTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCAGC---CSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................TGAACTCATC----------------------------------------AGCA--AT--ATTA--TTTCT................................................................................................................................................................................................................................................2511.00100000000000001000
droSec2
GC-------AGCAGCAACAACCAC--AGCA------------------A----ACCAGAGTAGTAAGCCATA-----------------------------------------------------------------------TAT------------AACACATCAAGAAAGCGCC-TC-A-------------------ACCAC---AA---A---------------------CAAC-ACCAA--CATTTATATGCTCTACTACTCCC------AGACCTCC---GAA-------T--GAAAC-A--AA-TGAACTCATC----------------------------------------AGCA--AT--ATTA--TTTCTCCTCTT-------TTTTTTCTTT------TTTTGT----CCCAACCT--TATGT--CC-----------------------------------------------------------------------------------GAA----------------------------CCCG----ATTTTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCAGC---CSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................................................A--AA-TGAACTCATC----------------------------------------AGCA--A..............................................................................................................................................................................................................................................................1811.0010010
....................CCAC--AGCA------------------A----ACCAGAGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
..........................................................................................................................................................................AAGCGCC-TC-A-------------------ACCAC---AA---A---------------------CA..................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
dm3
GC-------AGCAGCAACAACCAC--AGCA------------------A----ACCAGAGTAGTAAGCCATA-----------------------------------------------------------------------TAT------------AACACATCAAGAAAGCGCC-TC-A-------------------ACCAC---AA---A--------------------ACAAC-ACCAA--CATTTACTTGCTCTACTTCTCCC------AGACCTAC---GAA-------T--GAAAC-A--AA-TGAACTCATC----------------------------------------AGCA--AT--ATTA--TTTCTCCTCT---------TTTTTTT-TCT----TTTTAT----CCCAACCT--TATGT--CC-----------------------------------------------------------------------------------GAA----------------------------CCCG----ATTTTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCAGC---CSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................AA-------T--GAAAC-A--AA-TGAACTCA...............................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATCCGTTTGAGTAACAG............................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTTTGAGTAACAGCGCCGAGTCCA.................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CATA-----------------------------------------------------------------------TAT------------AACACATCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGTAACAGCGCCGAGTCCATT...............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
............................................................TAGTAAGCCATA-----------------------------------------------------------------------TAT------------AACACATCAAGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTAACAGCGCCGAGTC...................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGCGCCGAGTCCATT...............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTTGAGTAACAGCGCCGAGTCC..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................CAC---AA---A--------------------ACAAC-ACCAA--CATTTAC.................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTAACAGCGCCGAGTCCATTCAG............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACCT--TATGT--CC-----------------------------------------------------------------------------------GAA----------------------------CCCG----ATT.........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAACATCCGTTTGAGTAACAGCGC.........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................AACTCATC----------------------------------------AGCA--AT--ATTA--.....................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CAC--AGCA------------------A----ACCAGAGTAGTAAGCCATA-----------------------------------------------------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................ACATCAAGAAAGCGCC-TC-A-------------------ACCAC---...............................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..............................................................................................................................................................................................................................................................................................................................TCATC----------------------------------------AGCA--AT--ATTA--TTTCTCCTC............................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TCCC------AGACCTAC---GAA-------T--GAAAC-A--AA-TGAAC..................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CAC--AGCA------------------A----ACCAGAGTAGTAAGCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCGCCGAGTCCATTC..............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................AACCAC--AGCA------------------A----ACCAGAGTAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAACAGCGCCGAGTCCATTCAG............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCCATTCAGTATGC.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TAC---GAA-------T--GAAAC-A--AA-TGAACTCATC----------------------------------------AGC..................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TCAAGAAAGCGCC-TC-A-------------------ACCAC---AA---A--------------------A....................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAACAGCGCCGAGTCCATT...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGCAACATCCGTTTG....................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ACAACCAC--AGCA------------------A----ACCAGAGTAGTAAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................T------------AACACATCAAGAAAGCGCC-TC-A-------------------ACCAC---A..............................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGTAACAGCGCCGAGTCCATTCAG............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGTAACAGCGCCGAGTC...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..........................................................................................................................................................................................................................................................................CTCCC------AGACCTAC---GAA-------T--GAA................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCGCCGAGTCCATTCA.............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGTTGGCAACATCCGTTTGAGT.................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCCATTCAGTATGCAGC---.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GCAGCAACAACCAC--AGCA------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GC-------AGCAGCAACAACCAC--AGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droEre2
GC-------AGCAGCAACAACCAC--AGCA------------------A----ACGAGAGTAGTAAGCCATA-----------------------------------------------------------------------T--------------A--ACATCAAGAAAGCGCC-TC-A-------------------ACCAC---AA---A--------------------CCAAC-ACCAA--CATTCACTTGCTC---TACTCCC------AGACCTCC---GAA-------T--GAAAC-A--AA-TGAACTCATC----------------------------------------AGCA--AT--ATTA--TTTCTCCTCT---------TT-T----T------CTTTGT----CCCAACCT--TATGT--CC-----------------------------------------------------------------------------------GCA----------------------------CCCG----ATTTTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCAGC---CSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
GC--TCAGCAGCAGCAACAACCAC--AGCA------------------A----ACGAGAGTAGTAAGCCATA-----------------------------------------------------------------------T--------------A--ACATCAAGAAAGCGCC-TC-A-------------------ACCAC---AA---A--------------------CCAAC-ACCAACCAATTCACTTGCTC---TACTCCC------AGACCTCC---GAA-------T--GAAAC-A--AA-TGAACTCATC----------------------------------------AGCA--AT--ATTA--TTTCTCCTCT---------TT-T----T------CTTTGT----CCCAACCC--CATGT--CC-----------------------------------------------------------------------------------GAA----------------------------CCCG----ACTTTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCAGC---CSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................T--GAAAC-A--AA-TGAACTCATC----------------------------------------.....................................................................................................................................................................................................................................................................1920.50100100000000
droEug1
GC-------AGCTGCAACAACCACACAGCA------------------AA--TACAACAGTAGTCAGCCATA-----------------------------------------------------------------------TATAT----------A--ACATCAAGAAAGCGCC-TC-AAACTCGA------------ACCAC---AAGAAA----------AAA----AAACCAAC-ACCAA--CATTTATTTGC-----TACTCCA------AGACCTCA---GAA-AAT---T--GAAAC-A--AAAGTAACTCATC----------------------------------------ATCA--AT--ATTA--TTTCTCCTCT---------TTTT----T------CTTTGT----CCAAACTT--TATGT--CC-----------------------------------------------------------------------------------GAA----------------------------CCCGA---ATTTTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCAGC---CSizeHit CountTotal NormTotal
No Reads
droBia1
GC-------AGCAGCAACAACCACACAGCA------------------T----TCGGCAGTAGTAAGCCATA-----------------------------------------------------------------------T--------------AACACATCAAGAAAGCGCC-TC-C-------------------ACCAT---AG---A--------------------CCAAC-ACCAA--CATTT-TTTGC-----CACTCCACGACCAAGACCTCC---AGT-------T--GAAAC-C--AA-GTAACTCATC----------------------------------------AGCA--AT--ATTA--TTTTTCCTCT---------TT-T----T------CTTTGT----CCCACA-CTGTATGT--CC-----------------------------------------------------------------------------------GAA----------------------------CCCG----ATTTTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTACGCAGC---GSizeHit CountTotal NormTotal
No Reads
droTak1
GC-------AGCTGCAACAACC-------------------------------------GTAGTAAGCCATC-----------------------------------------------------------------------CATAT----------A--ACATCAAGAAAGCGAC-TC-A-------------------ACCAC---AA---A--------------------CCAAC-ACCAA--CATTTATTTGC-----CACTCCAAGACC-AGACCTCC---AAT-------T--GAAAC-A--AA-GTAACTCATC----------------------------------------AGCAATAT--ATTA--TTTCTCCTCTC-------TTT-T----T------CTTTAT----CCCTGTTT--TATGT--CC-----------------------------------------------------------------------------------AAA----------------------------CCCG----ATTTTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCGGC---CSizeHit CountTotal NormTotal
No Reads
droEle1
GC-------AGCTGCAACAACCAC--AGCA------------------A----ACAACAGTAGTAAGCCATA-----------------------------------------------------------------CACTCGTAT------------A--ACATCAAGAAAGCGCC-TC-CAGACCAA---------CCAACCAC---AA---A----------CCA----ACACCAAC-ACCAA--CATTTATTTGC-----TACTCCA------CAACCGCC---AAA-A-----T--GAAAC-A--AAAATAACTCATC----------------------------------------AGCA--AT--ATTA--TTTCTCCTCT---------TT-T----T------CTTTGA----CCCGTCTT--TATTC--CC------------------------------------T----------------------------------------------GAA----------------------------CCCGA---ACTTTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCAGC---CSizeHit CountTotal NormTotal
No Reads
droRho1
GC-------AGCTGCAACAACCAC--AGCA------------------A----ACAACAGTAGTAAGCCATA-----------------------------------------------------------------------TAT------------A--ACATCAAGAAAGCGCC-TCCA-------------------ATCAC---AA---A--------------------CCAAC---CA------TAATTTGC-----TTCTCCA------AGACCTCC---AAA-------T--GAAAC-A--AA-GTAACTCATC----------------------------------------AGCA--AT--ATCA--TTTCTCCTCT---------TT-T----T------CTTTGT----CCCGACTT--TATTC--CC-----------------------------------------------------------------------------------GAT----------------------------CCCG----ACTTTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCAGC---CSizeHit CountTotal NormTotal
No Reads
droFic1
AT-------AACAAAGACAACCAC--AGCA-------GAGAAAAAATAA----ACAACAGTAGTAAGCCACA-----------------------------------------------------------------------TAA--AAGAATATTTA--ACATCAAGAAAGCGCCAAC-A-------------------GCCAC--CAA---ACCAAACCAAACCAAATCAAACCAAC-ACCAA--CATTTATTTGC-----TACTCCA------AGACCTCT---GAA-C-----T--AAAGC-C--AA-TTAACTCATC----------------------------------------AGCA--AT--ATTA--TTTCTCCTCT---------TCTTTTT-TGT-TTTCTTTATTCCGCCCGACTT--TGTGTGTCC---------------------------------CGAT----------------------------------------------GAA---------------------------TCCCG----ATTTTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTACGCAGC---CSizeHit CountTotal NormTotal
No Reads
droKik1
GC-------AGGTGCAACAG---------------------------------------GTAGTAAGCCATAACACCATCAACAAC--------------------------A-ACAACAGCCACAAATG--------------------------------------------------------------------------AC--------------------------------------AA----CTAAACACT-----CAACATTT------AAGAAGCCACCAA-------T--A-A-CCAAAAGTTTAACTCAGCCAGC--------------------------------------CT--ATAATTTA--TTTCTCCTAT---------TTTT----T------CTTTGT----CCCCCA-ATTTATAC--CC-----------------------------------------------------------------------------------GAT-CCCCTCGATGATGATGATGATGATGATGACC----ATTCCAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCTGCAGGCSizeHit CountTotal NormTotal
No Reads
droAna3
GC-------AGCAGCAACAACAA----ACT------------------A----ACAACAATGACAAGACATC-----------------------------------------------------------------------TAC------------AA-------------------------------------------------------------------------------CGACCAA----CTAATTTGC-----TAATTTTTGCC--AAACAGCCCACAAAAAAATAATATGAAA------ATATAACTCATCATGC--------------------------------------CT--AT--ATTA--TTTCTCCTCTT----C--TTTTTTTTTT------CTTTGC----CCCGAT----AAT-----TGAACTCCGCCCCGACC-----------------------------------------------------------------------------------------------------------GTCCAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCAGC---CSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCCGTTTGAGTAACAGCGCC........................2311.001000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGTAACAGCGCCGAGTCCATT...............2611.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCGCCGAGTCCATTCAG............2111.001000001
droBip1
AC-------TAAAAC--------------TAACAACAAAGACCAGTACA----ACTACAATTGTAAGCCATA-----------------------------------------------------------------------TAA--CAGC------CATACAACAAACAAACGCA-AC-A-------------------ATCACCCCAA---A---------------------CAACGACCAA----CTAACTCGC-----TAACCAC------CG-CCCAC---GAA-------T--AT--C-A--AAAATAACTCATCATGC--------------------------------------CT--ATATATTG--TTTCTCCTCT---------TTTTTTTTT------CTTTGGC---CCCGA--T--TAT-----T-----------------------------------------------------------------------------------GAA----------------------------CTCC----AATCCAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATTCAGTATGCAGC---CSizeHit CountTotal NormTotal
No Reads
dp5
GCAATCA-CGGCAGCAACAATCAA--TTCA------------------ATCAT---------------------------------------------------------------------------TACGACGGCAACTTG---------------------------------------CATTGCAACCGCCACA---AGAAC---AA---G---------------------CAAC-A--AT--CTTTTATTTCC-----TG------------------T---CGC-------T--GAATC-A--AACGATACTGATC----------------------------------------AATAA-AT--ATTA--TTT-TCCTCT---------C--T----T------CTCTGT----CCCTGC-----------TG-----------------------------------------------------------------------------------TAA----------------------------CTCG----A--TCAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATACAGTATGCCTC---CSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................C--T----T------CTCTGT----CCCTGC-----------TG-----------------------------------------------------------------------------------TAA----------------------------C...................................................................2111.0010100000000
.............................A------------------ATCAT---------------------------------------------------------------------------TACGACGGCAACTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCGCCGAGTCCATACAGTATGC.......2611.0010010000000
droPer2
GCAATCA-CGGCAGCAACAATCAA--ATCA------------------ATCAT---------------------------------------------------------------------------TACGACGGCAACTTG---------------------------------------CATTGCAACCGCCACA---AGAAC---AA---G---------------------CAAC-A--AT--CTTTTATTTCC-----TG------------------T---CGC-------T--GAATC-A--AACGATACTGATC----------------------------------------AATAA-AT--ATTA--TTT-TCCTCT---------C--T----T------CTCTGT----CCCTGC-----------TC-----------------------------------------------------------------------------------TAA----------------------------CTCG----A--TCAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATACAGTATGCCTC---CSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................CTTTTATTTCC-----TG------------------T---CGC-------T--GAATC-.............................................................................................................................................................................................................................................................................................................................2311.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGTAACAGCGCCGA......................1911.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAACATCCGTTTGAGTA................................1911.001000100
droWil2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATACAATATGCTGC---ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AC-------AACTGTAACAACCAC--AGCC------------------A----C---GA----TTAGCCGAG--------------TCCAACAACCAAACAACCATCCATCCA-ACTAAAACCATAAA-----------------T------------G--ACAACAAGAAAATA--------------------------------------------------------------------------------------------------------------------------------------------AACTTTGCAAGCC-GATTTCTTT--TTGAAGCCCTG-TTTAATTGATGAACAA-AT--T-TTTGTTTTTCGTTT---------CTCT----TCT----TTCGCT----CCCGGC----------------------------CATCCGATGTATATACATATG------------------------CAATACGTAACCTGTGTATATAAA-ATCCA------------------------CACG----AAATTAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATACAGTACACAAC---ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATCCGTTTGAGTAACAGCGC.........................2311.001000000000001000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGTAACAGCGCCGAGTG...................2111.001000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................CT----TTCGCT----CCCGGC----------------------------CATCCGA................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAGTTGGCAACATCCGTT......................................2111.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
GC-------TGTACCAACAACCAT--------------------------------------------------------------------------------------CCG-ACTAAAACCATAAATGAAACAACAAAATA---------------------------------------ATATACATTTGATAAA---AAAAA---AA---A---------------------A-------------------------------------------------------------------------AAAACAAC-------GCCCCA-TTCTTTATGTGAAGCCCTGCTCAAATTCATAAACAA-AT--TTTA--TTTTTCGTTT---------TTCT----TCTTT--CTCTCC----CCCTCC------------G--------------CCATCCGATGTGTGTACATATATATATATATATATCCATATGCGATCAATGCGTAACCTGTGTATAT--AAA----------------------------TCCGCATTTAATCAGTTGGCAACATCCGTTTGAGTAACAGCGCCGAGTCCATACAGTACGCAAC---GSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CC-------TACAGCAGCAACTAC--AACA-------TG---------A----ACAAAA----TCAGCAG---------------AACCAACAACCAAAC--CAAGCCATCCAAATTACAAACATAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGCA-GCA-GAGTCCCT----------CCCACTTAAACTCAAAAACAA-AT--TATATTTTTTTCGTTTCTCTTCTCTTC-T----T------CTCTCT----CCC----C--CACGC--CA--------------CCATCCAATGTGTATATATAAAT----------------------------------------------ATA---------------------------TATAT----ATATTAGTTGGCAACATCCGTTTAAGTAACAGCGCCGAGTCCATACAATATGCCAC---ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 04:34 PM