ID:

dsi_5644

 Coordinate:

3r:6725768-6725917 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.6 -20.5 -19.7

Flybase annnotation

five_prime_UTR [3r_6725429_6725833_-]; exon [3r_6725251_6725833_-]; exon [3r_6725251_6725904_-]; five_prime_UTR [3r_6725251_6725904_-]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------###########################################################################################################################################################################################
GCGGAGGCGCAGGCGCATGCGCAGATGTCCTGCGCCATGGAAGGCGCAAGGTGGGGAGCTCCAGCCTTCCAGGCTGAATACCTACTGCTGCTCGACGCTTTTTGGCGAGCCGTCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACTGAACGCACGCTGCTGCTGTATCGCCGTAGTCGCCGTCCGTCGCCTGGAAAAAAGAACTCCCCGGAGCTACATTGTATAGCCAGGAATAGAAAAAAAAA
***************************************************************************************************************************************.......((((.((((.((.((...(((((.((......)).)))))...)))).)))).))))*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 O002
Head
 SRR553486
Makindu_3 day-old ovaries
.............................................................................ATGCCTACTGCTGCTAGACT......................................................................................................................................................... 20 3 2 15.50 31 0 30 0 0 0 1 0 0 0
.............................................................................ATGCCTACTGCTGCTAGACTC........................................................................................................................................................ 21 3 1 13.00 13 0 9 0 3 0 1 0 0 0
.......................................................................................................................................CTCCTGCCCGGACGACTGAA............................................................................................... 20 0 1 6.00 6 6 0 0 0 0 0 0 0 0
........................................................................................................................................................GAACGCACGCTGCTGCTG................................................................................ 18 0 1 6.00 6 6 0 0 0 0 0 0 0 0
.........................................................................................................................................CCTGCCCGGACGACTGAACG............................................................................................. 20 0 1 6.00 6 5 0 1 0 0 0 0 0 0
.........................................................................................................................................CCTGCCCGGACGACTGAA............................................................................................... 18 0 1 6.00 6 5 0 0 0 0 0 1 0 0
.............................................................................................................................................CCCGGACGACTGAACGCACGCTGC..................................................................................... 24 0 1 3.00 3 3 0 0 0 0 0 0 0 0
...........................................................................................................................................TGCCCGGACGACTGAACG............................................................................................. 18 0 1 3.00 3 3 0 0 0 0 0 0 0 0
...................................................................................................................................................CGACTGAACGCACGCTGC..................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.......................................................................................................................................CTCCTGCCCTGACGACTGAAC.............................................................................................. 21 1 1 2.00 2 0 0 2 0 0 0 0 0 0
........................................................................................................................................TCCTGCCCGGACGACTGAA............................................................................................... 19 0 1 2.00 2 1 0 1 0 0 0 0 0 0
.......................................................................................................................................CTCCTGCCCGGACGACTGAACG............................................................................................. 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0
............................................................................................................................................GCCCGGACGACTGAACGCACGCTGC..................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................GCCCGGACGACTGAACGC............................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................CCCGGACGACTGAACGCACGCTGCTG................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................CCTGCCCGGACGACTGAACGCACGCTGC..................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................TAGTCGCCGTCCGTCGCCTGG................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TAGTCGCCGTCCGTCGCCTGGG.................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
............................................................................................................................................GCCCGGACGACTGAACGCACGCTGCT.................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................GCCCGGACGACTGAACGCA........................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................TCCTGCCCGGACGACTGAAC.............................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................CCTGCCCGGACGACTGAACGCACGCT....................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................CACGCTGCTGCTGTATCGCC......................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................ACTGAACGCACGCTGCTG................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................CCTGCCCGGACGACTGAACGC............................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................TCGCCGTCCGTCGCCTGGAAA................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................CGAGCCGTCGTGAGACAG............................................................................................................................... 18 2 1 1.00 1 0 0 0 0 1 0 0 0 0
.......................................................................................................GTCGAGCCGTCGTGAGACAG............................................................................................................................... 20 3 2 0.50 1 0 0 0 0 1 0 0 0 0
................................................................CCTTCCAAGCTGAATA.......................................................................................................................................................................... 16 1 3 0.33 1 0 0 0 0 0 1 0 0 0
.................TGCACAGATGTCCTGGGC....................................................................................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0
.........................................................................................................CGAGCTGTCGTGAGACAG............................................................................................................................... 18 3 20 0.20 4 0 0 0 0 4 0 0 0 0
..............................TGCGCCAGGGAAGGCCC........................................................................................................................................................................................................... 17 2 6 0.17 1 0 0 0 0 1 0 0 0 0
........................................................................................................GCAAGCCGTCGTGAGACAG............................................................................................................................... 19 3 6 0.17 1 0 0 0 0 1 0 0 0 0
.................................................................CTTCCAAGCTGAATA.......................................................................................................................................................................... 15 1 17 0.12 2 0 0 0 0 0 2 0 0 0
..............................................................AGCCTTCCAAGCTGAATGTC........................................................................................................................................................................ 20 3 10 0.10 1 0 1 0 0 0 0 0 0 0
................................................................CCTTCCAAGCTGAATACGA....................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 2 0 0 0
..............................................................................TGCCTACTGCTGCTAGACT......................................................................................................................................................... 19 3 11 0.09 1 0 1 0 0 0 0 0 0 0
...................................................TGGGCAGCTCCATCCTTC..................................................................................................................................................................................... 18 2 14 0.07 1 0 0 0 0 1 0 0 0 0
...................................CACGTAAGGCGCAAGG....................................................................................................................................................................................................... 16 2 19 0.05 1 0 0 0 0 0 1 0 0 0
..........................................................................................................GAGCCGTCGTGAGACAGG.............................................................................................................................. 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0
...................................CCTGTAAGGCGCAAGG....................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1
..............................................CCGGGTGGGGAGCTCCA........................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0
.............................................................................................................CCGTCGTGAGACAGAACT........................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

CGCCTCCGCGTCCGCGTACGCGTCTACAGGACGCGGTACCTTCCGCGTTCCACCCCTCGAGGTCGGAAGGTCCGACTTATGGATGACGACGAGCTGCGAAAAACCGCTCGGCAGCGGTCTGTCTTCAATGGAAACGAGGACGGGCCTGCTGACTTGCGTGCGACGACGACATAGCGGCATCAGCGGCAGGCAGCGGACCTTTTTTCTTGAGGGGCCTCGATGTAACATATCGGTCCTTATCTTTTTTTTT
***************************************************.......((((.((((.((.((...(((((.((......)).)))))...)))).)))).))))*************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
..............................................................................ACGGATGACGACGATCTGAG........................................................................................................................................................ 20 3 4 1.25 5 4 1 0 0 0
.......................................................................................................................................................................................CGGCAGGCAGCGTACCA.................................................. 17 2 5 0.20 1 1 0 0 0 0
............................................................GGTCGGACGGCCCGAGTTA........................................................................................................................................................................... 19 3 13 0.15 2 0 2 0 0 0
.........................................................................................................................TCTTTAATGGAGCCGAGGA.............................................................................................................. 19 3 9 0.11 1 0 0 1 0 0
...........................................................................CGTACGGATGACGACGATC............................................................................................................................................................ 19 3 18 0.11 2 1 0 0 1 0
....................................................................................................................................................................................................................GCCCTCGTTGTATCATAT.................... 18 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:6725718-6725967 - dsi_5644 GCGGAGGCGCAGGCGCATGCGCAG--ATGTCCTGCGCCATGGAA-GGCGCA-----------------------AG-----------------------------------------------------GTGGGGAGC-------T---------CCAG-CCTTCCAGGCT---------------GAATACCTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--CTGCTC-------------G-AC-----GCTTTTTGGC-----GA--GCC-----GTCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACTGAACGCACGCTG-CTGCTGTA---TCGCCGTAGTC--------GCCGTCCGTCGCCTGGAA-A---AA-------------------------------------------------AGAACTCCC----------CGGAGCTACATTGTA-TAGCCAGG--------------AATAGAAAAAAAAA--------
droSec2 scaffold_5:5369470-5369717 - GCGGAGGCGCAGGCGCATGCGCAG--ATGTCCTGCGCCGTGGAA-GGCGCA-----------------------AG-----------------------------------------------------GTGGGGAGC-------T---------CCAG-CCTTCCAGGCT---------------GAATACCTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--CTGCTC-------------A-AC-----GCTTTTTGGC-----AA--GCC-----GTCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACTGAACGCACGCTG-CTGCTGTA---TCGCCGTAGTC--------GCCGTCCGTCGCCTGGAA-----AA-------------------------------------------------AGAACTCCC----------CGGAGCTACATTGTA-TAGCCAGG--------------AATAGAAAA-AAAA--------
dm3 chr3R:14531111-14531367 + GCGGAGGCGCAGGCGCATGCGCAG--ATGTCCTGCGCCATGGAA-GGCGCA-----------------------AG-----------------------------------------------------GTGGGGAGC-------T---------CCAG-CCTTCCAGGCT---------------GAATACCTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--CTGCTC-------------G-AC-----GCTTTTTGGC-----CA--GCC-----GTCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACTGAACGCACGCTG-CTGCTGTA---ACGCCGTAGTC--------GCCGTCCGTCGCCTGGAA-----AA-------------------------------------------------AGAACTCCC----------CGGAGCTACATTGTA-TAGCCAGG--------------AATAGAAAAAAAAAAAAAATAA
droEre2 scaffold_4770:7102111-7102350 - GCGGAGGCGCAGGCGCATGCGCAG--ATGTCCTGCGCCGTGGAA-GGCGCA-----------------------AG-----------------------------------------------------GTGGGGAGC-------T---------CCAG-CCTTCCAGGCT---------------GAATACCTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--CTGCTC-------------T-GC-----GCTTTTCGGC-----GA--GCC-----GTCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACTGAACGCACGCTG-CTGCTGTA---TCGCCGTAGTC--------GCCGTCCGTCGCCTGGAA-----A--------------------------------------------------AGAACTCCC----------CGGAGCTACAT-GCA-TAGCCCGA--------------AATAGAA---------------
droYak3 3R:3189057-3189297 + GCGGAGGCGCAGGGGCATGCGCAG--ATGTCTTGCGCCGTGGAA-GGCGCA-----------------------AG-----------------------------------------------------GTGGGGAGC-------T---------CCAG-CCTTCCAGGCT---------------GAATACCTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--CTGCTC-------------T-GC-----GCTTTTCGGC-----CA--GCC-----GTCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACTGAACGCACGCTG-CTGCTGTA---TCGCCGTAGTC--------GCCGTCCGTCGCCTGGAA-----AA-------------------------------------------------AGAACTCCC----------CGGAGCTACAT-GTA-CAGCCAGA--------------AATAGAA---------------
droEug1 scf7180000409804:760145-760379 + GCGGAGGCGCAGGCGCATGCGCAT--ATGTCCTGCGCCGTGGAA-GGCGCA-----------------------AG-----------------------------------------------------GTGGGGAGC-------A----------CGG-CCTTCCAGGCT---------------GAATACCGACAAAA-A-----------------------------------------------------------------------------------TCGCTGAG--------------------------------------------------------------C-----TG--CTGCTC-------------T-GG-----GCTTTTTGGC-----GA--ACC----AGTTGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACTGAACGCACGCTG-CTGCTGTT---TCGCCGTAGTC--------GCCGTCCGTCGCCTGGAACAAAA------T-----------------------------------------------------------------------------------------------------AATAGAAAAAAATA--------
droBia1 scf7180000302402:257649-257932 + GCGGAGGCGCAGACGCATGCGCAG--TTGTCCTACGCCCTGGAAAAGCGCA-----------------------CG-----------------------------------------------------GCGGGGAGC-------T----------CGG-CCTTCCAGGCT---------------GAATACCGACAAAAACGA--------------------------------------------------------------------------CG--------------------------------------------------------------------------------------AGCTCTGGCCTTTTCCACG-G-------------GGC-----TC--ACC-----ATCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACTGAACGCACGCTG-CTGCTGTT---TCGCCGTAGT------CTCGCCGCCCGTCGCCTGGAA-AAAA------T-ATAGAAA------------------AAATAATA----------AGAACTTCC----------CGGAGCAGCAGAGGAGCT-CCAGA-GCTC----TCGAAAATCG------AAA--------
droTak1 scf7180000415206:17604-17900 - GCGGAGGCGCAGGCGCATGCGCCT-CGAGTCCTGCGCCCTGGAA-AACGCA-----------------------AG-----------------------------------------------------GTGGGGAGC-------T----------CGT-CATTCCAGGCT---------------GAATACCGACAAAAACGG--------------------------------------------------------------------------CG-------------------------------------------------------A---------GCT-CTGCT-CTGCTTTGCTCTGCTC-------------G-GG-----GCTTTTCAGCCAAGCGA--ACCAACCGTTCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACTGAACGCACGCTG-CTGCTGTT---TCGCCGTAGT------CTCGCCGTCCGTCGCCTGGAA-----AAAGAAAAATAGAAATAGAAA------------A----GGA----------AAAACTCCC----------TGGAGC-----------T-CCAGA-GCTC----T-------AG-----AAAA--------
droEle1 scf7180000490994:261768-262054 + GCGGGGGCGCAGGCGCATGCGCAG--GTGTCCTGCGCCGTGGAA-GGCGCA-----------------------AG-----------------------------------------------------GTGGGGAGC-------T----------CGG-CCTTCCAGGCT---------------GAATACCGACAAAA-CGA--------------------------------------------------------------------------CGA-ACGAC------------------------------------------CCG-----TGCAGT-AGCTACTGCTGC-----TG--CTGCTC-------------T-GC-----GCTTTTCAGCTCA--GA--ACC---CAGTCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGCCTGAACGCACGCTG-CTGCTGTT---TCGCCGTAGT------CTCGCCGTCCGTCGCCTGGAA-----A--------------------CCAAAAAAAATA--------AATAAATAAAATAAAAA--------------------------------------AATAAAAT------------AAAAAC--------
droRho1 scf7180000779900:152768-153058 + GCGGAGGCGCAGGCGCATGCGCAG--GTGTCCTGCGCCGTGGAA-GGCGCA-----------------------AG-----------------------------------------------------GTGGGGAGC-------T----------CGG-CCTTCCAGGCT---------------GAATACCGACAAAA-CGTC-------GAGCTGCTGCCGCTGCTGCTGCTGCTGCTGCTAGTGCTGGTG-----------------------------------------------------------------------------------------------------C-----TG--CTGCTC-------------T-GT-----GCTTTTCAGC-----GA--ACC---CAGTCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACTGAACGCACGCTG-CTGCTGTT---TCGCCGTAGT------CTCGCCGTCCGTCGCCTGGAA-----A--------------------------------------------------AGAACTCCC----------CGGAGCAG------AGCT-CCAGA-GCC--------------G----AAATT--------
droFic1 scf7180000453812:532185-532465 - GCGGAGGCGCAGACGCATGCGCAG--ATGTCCTGCGCCGTGGAA-GGCGCA-----------------------CG-----------------------------------------------------TTGGGGACCA------T----------CGGCCCTTCCAGCCT-------------GTGAATACCGACAAAA-G-G--------------------------------------------------------------------------CG-------------------------------------------------------AGTGAGCTCAGCT-CTGCT-CTGCTTTGCTCTGCTC-------------T-GCAGTAGACTTTCTGGC-----GA--ACG-----CTCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACTGAACGCACGCTG-CTGCTGTT---TCGCCGTAGTC--------GCCGTCCGTCGCCTGGAAGAAAAAA-------------------------------------------------AAAACTCCC----------CGGAGCTGC--------T-CCAGA--------------ACT-G------AAA--------
droKik1 scf7180000302256:488864-489139 - GCGGTGGAGCAGGCGCATGCGCCA-TGTATCCTGCGCCATGGAA-GGCGCA-----------------------CGGC----------AGT-------------------------------------GGCGGGGAGCAGATCTCTCCGAACGGCACAA-CATTCCAGGCGCACTCCGTCGTCCATGAATACCGACAAAA-CG-------------------------------------------------------------------------AACGA-A----------------------------------------------GAGGCGAG-------AGCT-----------------CTGCCC------GTGGCGCT-GG-----GC---------------------------TGTCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACTGAACGCACGCTG-CTGCCGTTAG-TCGCCGTAGTC--------G------------TGGAA-----A----------------------------------------------------CACTCCC----------CGGAGCAG--------CTCCCAGA-GCC--------------C----AGTTC--------
droAna3 scaffold_13340:6608166-6608449 - ATGGTGGAGCAGGCGCCTGCGCAAACATATCCTGCGCCGTGGAA-AGCCCACACACACACAGATACAACGAGGAAG-----------------------------------------------------GTGGGGAGCA------T---------TCGG-CATTCCAGGCT---------------GAATACCGACAAAA-CAG--------------------------------------------------------------------------CATTTGCTTGCTGAGGGC-----------------------------------------------------------T-----TG--CTGCTC-------------G-CT-----GCTTTCTG----------------------GCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACAGAACGCACGCTG-TTGCCGCGT--CCGCTGGA---------------TCTGGGATCTGGGA-----A--------------------CTGGGAGAACTG------------------------------------------GTTTATTGCT-TTGCTGTGAACACCAA-C--------G---TAAAAC--------
droBip1 scf7180000396708:2230764-2231038 + ATGGTGGCGCAGGCGCCTGCGCAAACATATCCTGCGCCGTGGAA-AGCCCACACACAC----ATACGATGAGGAAG-----------------------------------------------------GTGGGGAGCA------T---------TCGG-CATTCCAGGCT---------------GAATACCGACAAAA-CAG--------------------------------------------------------------------------CAT----TTGCTGAGGGC-----------------------------------------------------------T-----TG--CTGCTC-------------G-CT-----GCTTTCTG----------------------GCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACAGAACGCACGCTG-CTGCCGCGT--CCGCTGGA---------------TCTGGGATCTGGGA-----A--------------------CTGGGAGAACTG------------------------------------------GTTTATTGCT-TTGCTGTGAACTC-CAAC------------GGAAGA--------
dp5 2:10611001-10611302 - TTGGAGGCGC------ATGCGTC---GTATCCTGCGCCGTGGAA-AGCTCA-----------------------TGTTCTG---AGA----------GCCAGGGGCAGCGGACGGAGACGC----------------C-------T---------CAGA-CATTCCAGGCT---------------GAATACCGACAAAA-T--------------------------------------------------------------------------AACGG-TGTATGCAGAGAGCAGCAGAGCAGAGCAGCAAAGCAGCAAAGCAGAGCCG-----AGCAGC-AGCAGCAGCAGT-------------G-------------GCAGA-------------GC-----CAGCGCC-----AGTGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGATACAACGCACGTTG-CTGCCTCG---TAGTCGTTGT------CTG----TCTGTCGTTG-----------------------------------------------------------------TCC------TTTGGTG----------GTG-CTGCCAGA-G-------------------------A--------
droPer2 scaffold_0:9868609-9868902 + TTGGAGGCGC------ATGCGTC---GTATCCTGCGCCGTGGAA-AGCTCACA---------------------CT--TTG---CGG----------GCCAGGGGCTGCGGACGGAGACGC----------------C-------T---------CAGA-CATTCCAGGCT---------------GAATACCGACAAAA-T--------------------------------------------------------------------------AACGG-TGTATGCAGAGAGCAGCA--GCAGAGCAGCAAAGCAGCAAAGCAGAGCCG-----AGCAGC-AG-------------------CAGCG-------------GCAGA-------------GC-----CAGCGCC-----AGTGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGATACAACGCACGTTG-CTGCCTCG---TAGTCGTTGT------CTG----TCTGTCGTTG-----------------------------------------------------------------TCC------TTTGGTG----------GTG-CTGCCAGA-G-------------------------A--------
droWil2 scf2_1100000004943:2557813-2558041 + ---------CAGGCGCATGCGTT---GTATCCTGCGCCGTGGAA-AGCTCA-----------------------TT-C----------GGTCGGTCCCCTGCT---------------CGCTTGGTTGGACGGGCAGCGTATC--A---------TCAG-CATTCCAGGCT---------------GAATACCGACAAAA-T--------------------------------------------------------------------------AACGG-TATAC------------------------------------------CAGGCGA---------------------------------GT-------------A-GC-------------GC-----TT--ACC-----ATAGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACACAACGCACGCTTGCCTACT-T-GCTGTCCGTTGGC--------GTTGTCTGGCCTCT-------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12822:854196-854472 + ATGGAGGCGC------ATGCGTC---ATGTCCTGCGCCGTGGAA-AACGCA-----------------------CGGC----------AGACGTTTAGCTAC--------------------------------GAGC-------T-----------GG-AATTCCAGGCT---------------GAATACCGACAAAA-AAG-----------------------------------------------------------------------TAACGG-TA-------ACGG------------------------------------------------------------C-----AG--CAGCGC-------------G-GC-----G--------C-----GA--A-C-----AGCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACACAACGCACGCTG-CCAA-------TTGCTGTCGTT--------GTCGTCGGCCGCCCAAAA-----AA-GCAAAAGAAAACTGAAAATTCG--------A----GGA----------AAAACTTGCTGTATTTT--------------G----TGCAAAA--AATTAAAC------------GAAAAA--------
droMoj3 scaffold_6540:33519655-33519958 + GCCACAG-GCAGGCGCATGCGTC---ATGTCCTGCGCCGTGGAA-AGCTC------------------------CG-----AA--------------------------------AGA-----------GACCTGAGC-------T-----------GG-AATTCCAGCCT---------------GAATACCGACAAAAAC-ACACACACACAGCCACAGCCGCAGCAGCAGCAGCAGCAGCGACAGCAGCAGCAGCAGCAGAAGAAATGAAAATAACGG-TATAG--------------------------------------------------------------------C-----AG--CAGCTA-------------C-GT-------------GC-----GA--G-C-----AGCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACACAACGCACGCTG-CCAACT---G-CTGCTGTCGTT--------GC------TCACTTTGCA-----A----------------------------------------AATCCATAAAAT---------------------------------------AA--------------AATAGAAAAGAAAA--------
droGri2 scaffold_15074:2938652-2938917 - GTGGAGGCGC------ATGCGTCA--TAATCCTGCGCCGTGGAA-AGCTTA-----------------------CGGCTTGATACGGGAGAC---TCGCGAC-----------------------------GTGCTGC-------T----------TGG-AATTCCAGGCT---------------GAATACCGACAAAA-T--------------------------------------------------------------------------AACGG-TATAC--------------------------------------------------------------------A-----AG--CAGCGT-------------T-GG-------------GC-----CA--G-C-----AGCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACACAACGCACGCTG-CCATTT---G-CTGTCGTTGTCGTTGTCTGGCC-TCGGCCTCCCACAC-----AC--------------------------ACACA--------ACTACACAAAAGAAAAT-----------------------------T-CT--------------------AGAAAAAAAAA--------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCGGAGGCGCAGGCGCATGCGCAG--ATGTCCTGCGCCATGGAA-GGCGCA-----------------------AG-----------------------------------------------------GTGGGGAGC-------T---------CCAG-CCTTCCAGGCT---------------GAATACCTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--CTGCTC-------------G-AC-----GCTTTTTGGC-----GA--GCC-----GTCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACTGAACGCACGCTG-CTGCTGTA---TCGCCGTAGTC--------GCCGTCCGTCGCCTGGAA-A---AA-------------------------------------------------AGAACTCCC----------CGGAGCTACATTGTA-TAGCCAGG--------------AATAGAAAAAAAAA--------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTGCCCGGACGACTGAA.................................................................................................................................................................................................2016.00660000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGCACGCTG-CTGCTG.................................................................................................................................................................................1816.00660000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCCCGGACGACTGAACG...............................................................................................................................................................................................2016.00650100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCCCGGACGACTGAA.................................................................................................................................................................................................1816.00651000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGGACGACTGAACGCACGCTG-C......................................................................................................................................................................................2413.00330000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCGGACGACTGAACG...............................................................................................................................................................................................1813.00330000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTGAACGCACGCTG-C......................................................................................................................................................................................1812.00220000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGCCCGGACGACTGAA.................................................................................................................................................................................................1912.00210100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTGCCCGGACGACTGAACG...............................................................................................................................................................................................2212.00220000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGGACGACTGAACGCACGCTG-C......................................................................................................................................................................................2511.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGGACGACTGAACGC..............................................................................................................................................................................................1811.00110000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGGACGACTGAACGCACGCTG-CTG....................................................................................................................................................................................2611.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCCCGGACGACTGAACGCACGCTG-C......................................................................................................................................................................................2811.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTC--------GCCGTCCGTCGCCTGG.........................................................................................................................................2111.00110000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTC--------GCCGTCCGTCGCCTGGG........................................................................................................................................2211.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGGACGACTGAACGCACGCTG-CT.....................................................................................................................................................................................2611.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGGACGACTGAACGCA.............................................................................................................................................................................................1911.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGCCCGGACGACTGAAC................................................................................................................................................................................................2011.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCCCGGACGACTGAACGCACGCT.........................................................................................................................................................................................2611.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGCTG-CTGCTGTA---TCGCC.......................................................................................................................................................................2011.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAACGCACGCTG-CTG....................................................................................................................................................................................1811.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCCCGGACGACTGAACGC..............................................................................................................................................................................................2111.00100000100000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--------GCCGTCCGTCGCCTGGAA-A---..................................................................................................................................2111.00110000000000000000
droSec2
GCGGAGGCGCAGGCGCATGCGCAG--ATGTCCTGCGCCGTGGAA-GGCGCA-----------------------AG-----------------------------------------------------GTGGGGAGC-------T---------CCAG-CCTTCCAGGCT---------------GAATACCTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--CTGCTC-------------A-AC-----GCTTTTTGGC-----AA--GCC-----GTCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACTGAACGCACGCTG-CTGCTGTA---TCGCCGTAGTC--------GCCGTCCGTCGCCTGGAA-----AA-------------------------------------------------AGAACTCCC----------CGGAGCTACATTGTA-TAGCCAGG--------------AATAGAAAA-AAAA--------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTGCCCGGACGACTGAA.................................................................................................................................................................................................2111.0010001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTGAACGCACGCTG-CTG....................................................................................................................................................................................2011.0010001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTGCCCGGACGACTGAA.................................................................................................................................................................................................2011.0010001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCCGGACGACTGAACGCA.............................................................................................................................................................................................2111.0010001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTC--------GCCGTCCGTCGCCTGGA........................................................................................................................................2211.0010001
dm3
GCGGAGGCGCAGGCGCATGCGCAG--ATGTCCTGCGCCATGGAA-GGCGCA-----------------------AG-----------------------------------------------------GTGGGGAGC-------T---------CCAG-CCTTCCAGGCT---------------GAATACCTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--CTGCTC-------------G-AC-----GCTTTTTGGC-----CA--GCC-----GTCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACTGAACGCACGCTG-CTGCTGTA---ACGCCGTAGTC--------GCCGTCCGTCGCCTGGAA-----AA-------------------------------------------------AGAACTCCC----------CGGAGCTACATTGTA-TAGCCAGG--------------AATAGAAAAAAAAAAAAAATAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGCTCCTGCCCGGACGACTGAGT................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCCCGGACGACTGAA.................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................GCCATGGAA-GGCGCA-----------------------AG-----------------------------------------------------GTGGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................GCCATGGAA-GGCGCA-----------------------AG-----------------------------------------------------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCCGGACGACTGAACGCAC............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTTTGCTCCTGCCCGGACGACT....................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------------AATAGAAAAAAAAAAAA.....1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAAAAAAAAAAAAAA...18170.1220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCGGAGGCGCAGGCGCATGCGCAG--ATGTCCTGCGCCGTGGAA-GGCGCA-----------------------AG-----------------------------------------------------GTGGGGAGC-------T---------CCAG-CCTTCCAGGCT---------------GAATACCTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--CTGCTC-------------T-GC-----GCTTTTCGGC-----GA--GCC-----GTCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACTGAACGCACGCTG-CTGCTGTA---TCGCCGTAGTC--------GCCGTCCGTCGCCTGGAA-----A--------------------------------------------------AGAACTCCC----------CGGAGCTACAT-GCA-TAGCCCGA--------------AATAGAA---------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGCCCGGACGACTGAACGCACGC..........................................................................................................................................................................................2611.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTCCTGCCCGGACGACTG...................................................................................................................................................................................................2211.0010001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--------GCCGTCCGTCGCCTGGAA-----..................................................................................................................................2011.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTC--------GCCGTCCGTCGCCTG..........................................................................................................................................2011.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGGACGACTGAACGCACGCTG-CTG....................................................................................................................................................................................2611.0010010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--------GCCGTCCGTCGCCTGGA........................................................................................................................................1911.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTC--------GCCGTCCGTCGCCTGG.........................................................................................................................................2111.0010000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAACGCACGCTG-CTGC...................................................................................................................................................................................1911.0010001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTCCTGCCCGGACG.......................................................................................................................................................................................................1811.0010000010
droYak3
GCGGAGGCGCAGGGGCATGCGCAG--ATGTCTTGCGCCGTGGAA-GGCGCA-----------------------AG-----------------------------------------------------GTGGGGAGC-------T---------CCAG-CCTTCCAGGCT---------------GAATACCTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--CTGCTC-------------T-GC-----GCTTTTCGGC-----CA--GCC-----GTCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACTGAACGCACGCTG-CTGCTGTA---TCGCCGTAGTC--------GCCGTCCGTCGCCTGGAA-----AA-------------------------------------------------AGAACTCCC----------CGGAGCTACAT-GTA-CAGCCAGA--------------AATAGAA---------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--------GCCGTCCGTCGCCTGGAA-----G.................................................................................................................................2112.00220000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCCCGGACGACTGAACGCACGC..........................................................................................................................................................................................2521.00220000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--------GCCGTCCGTCGCCTGGA........................................................................................................................................1911.00110000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGGACGACTGAACGCACGCTG-CTG....................................................................................................................................................................................2621.00220000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCCCGGACGACTGAACGCACGCTG-.......................................................................................................................................................................................2720.50110000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCCCGGACGACTGAA.................................................................................................................................................................................................1820.50110000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGGACGACTGAACGCACGCTG-CTGC...................................................................................................................................................................................2720.50110000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGGACGACTGAACGCACGCT.........................................................................................................................................................................................2220.50101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGGACGACTGAACGCACGCTG-C......................................................................................................................................................................................2420.50110000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGGACGACTGAACGCACGCTG-CTG....................................................................................................................................................................................2720.50110000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGCACGCTG-CTGCTG.................................................................................................................................................................................1820.50110000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTTGCTCCTGCCCGGACGACTGAACG...............................................................................................................................................................................................2920.50110000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCCGGACGACTGAAC................................................................................................................................................................................................1820.50110000000000
droEug1
GCGGAGGCGCAGGCGCATGCGCAT--ATGTCCTGCGCCGTGGAA-GGCGCA-----------------------AG-----------------------------------------------------GTGGGGAGC-------A----------CGG-CCTTCCAGGCT---------------GAATACCGACAAAA-A-----------------------------------------------------------------------------------TCGCTGAG--------------------------------------------------------------C-----TG--CTGCTC-------------T-GG-----GCTTTTTGGC-----GA--ACC----AGTTGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACTGAACGCACGCTG-CTGCTGTT---TCGCCGTAGTC--------GCCGTCCGTCGCCTGGAACAAAA------T-----------------------------------------------------------------------------------------------------AATAGAAAAAAATA--------SizeHit CountTotal NormTotal
No Reads
droBia1
GCGGAGGCGCAGACGCATGCGCAG--TTGTCCTACGCCCTGGAAAAGCGCA-----------------------CG-----------------------------------------------------GCGGGGAGC-------T----------CGG-CCTTCCAGGCT---------------GAATACCGACAAAAACGA--------------------------------------------------------------------------CG--------------------------------------------------------------------------------------AGCTCTGGCCTTTTCCACG-G-------------GGC-----TC--ACC-----ATCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACTGAACGCACGCTG-CTGCTGTT---TCGCCGTAGT------CTCGCCGCCCGTCGCCTGGAA-AAAA------T-ATAGAAA------------------AAATAATA----------AGAACTTCC----------CGGAGCAGCAGAGGAGCT-CCAGA-GCTC----TCGAAAATCG------AAA--------SizeHit CountTotal NormTotal
No Reads
droTak1
GCGGAGGCGCAGGCGCATGCGCCT-CGAGTCCTGCGCCCTGGAA-AACGCA-----------------------AG-----------------------------------------------------GTGGGGAGC-------T----------CGT-CATTCCAGGCT---------------GAATACCGACAAAAACGG--------------------------------------------------------------------------CG-------------------------------------------------------A---------GCT-CTGCT-CTGCTTTGCTCTGCTC-------------G-GG-----GCTTTTCAGCCAAGCGA--ACCAACCGTTCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACTGAACGCACGCTG-CTGCTGTT---TCGCCGTAGT------CTCGCCGTCCGTCGCCTGGAA-----AAAGAAAAATAGAAATAGAAA------------A----GGA----------AAAACTCCC----------TGGAGC-----------T-CCAGA-GCTC----T-------AG-----AAAA--------SizeHit CountTotal NormTotal
No Reads
droEle1
GCGGGGGCGCAGGCGCATGCGCAG--GTGTCCTGCGCCGTGGAA-GGCGCA-----------------------AG-----------------------------------------------------GTGGGGAGC-------T----------CGG-CCTTCCAGGCT---------------GAATACCGACAAAA-CGA--------------------------------------------------------------------------CGA-ACGAC------------------------------------------CCG-----TGCAGT-AGCTACTGCTGC-----TG--CTGCTC-------------T-GC-----GCTTTTCAGCTCA--GA--ACC---CAGTCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGCCTGAACGCACGCTG-CTGCTGTT---TCGCCGTAGT------CTCGCCGTCCGTCGCCTGGAA-----A--------------------CCAAAAAAAATA--------AATAAATAAAATAAAAA--------------------------------------AATAAAAT------------AAAAAC--------SizeHit CountTotal NormTotal
No Reads
droRho1
GCGGAGGCGCAGGCGCATGCGCAG--GTGTCCTGCGCCGTGGAA-GGCGCA-----------------------AG-----------------------------------------------------GTGGGGAGC-------T----------CGG-CCTTCCAGGCT---------------GAATACCGACAAAA-CGTC-------GAGCTGCTGCCGCTGCTGCTGCTGCTGCTGCTAGTGCTGGTG-----------------------------------------------------------------------------------------------------C-----TG--CTGCTC-------------T-GT-----GCTTTTCAGC-----GA--ACC---CAGTCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACTGAACGCACGCTG-CTGCTGTT---TCGCCGTAGT------CTCGCCGTCCGTCGCCTGGAA-----A--------------------------------------------------AGAACTCCC----------CGGAGCAG------AGCT-CCAGA-GCC--------------G----AAATT--------SizeHit CountTotal NormTotal
No Reads
droFic1
GCGGAGGCGCAGACGCATGCGCAG--ATGTCCTGCGCCGTGGAA-GGCGCA-----------------------CG-----------------------------------------------------TTGGGGACCA------T----------CGGCCCTTCCAGCCT-------------GTGAATACCGACAAAA-G-G--------------------------------------------------------------------------CG-------------------------------------------------------AGTGAGCTCAGCT-CTGCT-CTGCTTTGCTCTGCTC-------------T-GCAGTAGACTTTCTGGC-----GA--ACG-----CTCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACTGAACGCACGCTG-CTGCTGTT---TCGCCGTAGTC--------GCCGTCCGTCGCCTGGAAGAAAAAA-------------------------------------------------AAAACTCCC----------CGGAGCTGC--------T-CCAGA--------------ACT-G------AAA--------SizeHit CountTotal NormTotal
No Reads
droKik1
GCGGTGGAGCAGGCGCATGCGCCA-TGTATCCTGCGCCATGGAA-GGCGCA-----------------------CGGC----------AGT-------------------------------------GGCGGGGAGCAGATCTCTCCGAACGGCACAA-CATTCCAGGCGCACTCCGTCGTCCATGAATACCGACAAAA-CG-------------------------------------------------------------------------AACGA-A----------------------------------------------GAGGCGAG-------AGCT-----------------CTGCCC------GTGGCGCT-GG-----GC---------------------------TGTCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACTGAACGCACGCTG-CTGCCGTTAG-TCGCCGTAGTC--------G------------TGGAA-----A----------------------------------------------------CACTCCC----------CGGAGCAG--------CTCCCAGA-GCC--------------C----AGTTC--------SizeHit CountTotal NormTotal
No Reads
droAna3
ATGGTGGAGCAGGCGCCTGCGCAAACATATCCTGCGCCGTGGAA-AGCCCACACACACACAGATACAACGAGGAAG-----------------------------------------------------GTGGGGAGCA------T---------TCGG-CATTCCAGGCT---------------GAATACCGACAAAA-CAG--------------------------------------------------------------------------CATTTGCTTGCTGAGGGC-----------------------------------------------------------T-----TG--CTGCTC-------------G-CT-----GCTTTCTG----------------------GCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACAGAACGCACGCTG-TTGCCGCGT--CCGCTGGA---------------TCTGGGATCTGGGA-----A--------------------CTGGGAGAACTG------------------------------------------GTTTATTGCT-TTGCTGTGAACACCAA-C--------G---TAAAAC--------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGA-----A--------------------CTGGGAGAACTG------------------------------------------GT.....................................................1811.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGGACGACAGAACGCACGCTG-.......................................................................................................................................................................................2411.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTGCCCGGACGACAGAACGCA.............................................................................................................................................................................................2511.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-----A--------------------CTGGGAGAACTG------------------------------------------GTT....................................................1811.001001000
....................................................................CGAGGAAG-----------------------------------------------------GTGGGGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.051000100
droBip1
ATGGTGGCGCAGGCGCCTGCGCAAACATATCCTGCGCCGTGGAA-AGCCCACACACAC----ATACGATGAGGAAG-----------------------------------------------------GTGGGGAGCA------T---------TCGG-CATTCCAGGCT---------------GAATACCGACAAAA-CAG--------------------------------------------------------------------------CAT----TTGCTGAGGGC-----------------------------------------------------------T-----TG--CTGCTC-------------G-CT-----GCTTTCTG----------------------GCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACAGAACGCACGCTG-CTGCCGCGT--CCGCTGGA---------------TCTGGGATCTGGGA-----A--------------------CTGGGAGAACTG------------------------------------------GTTTATTGCT-TTGCTGTGAACTC-CAAC------------GGAAGA--------SizeHit CountTotal NormTotal
No Reads
dp5
TTGGAGGCGC------ATGCGTC---GTATCCTGCGCCGTGGAA-AGCTCA-----------------------TGTTCTG---AGA----------GCCAGGGGCAGCGGACGGAGACGC----------------C-------T---------CAGA-CATTCCAGGCT---------------GAATACCGACAAAA-T--------------------------------------------------------------------------AACGG-TGTATGCAGAGAGCAGCAGAGCAGAGCAGCAAAGCAGCAAAGCAGAGCCG-----AGCAGC-AGCAGCAGCAGT-------------G-------------GCAGA-------------GC-----CAGCGCC-----AGTGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGATACAACGCACGTTG-CTGCCTCG---TAGTCGTTGT------CTG----TCTGTCGTTG-----------------------------------------------------------------TCC------TTTGGTG----------GTG-CTGCCAGA-G-------------------------A--------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TTGGAGGCGC------ATGCGTC---GTATCCTGCGCCGTGGAA-AGCTCACA---------------------CT--TTG---CGG----------GCCAGGGGCTGCGGACGGAGACGC----------------C-------T---------CAGA-CATTCCAGGCT---------------GAATACCGACAAAA-T--------------------------------------------------------------------------AACGG-TGTATGCAGAGAGCAGCA--GCAGAGCAGCAAAGCAGCAAAGCAGAGCCG-----AGCAGC-AG-------------------CAGCG-------------GCAGA-------------GC-----CAGCGCC-----AGTGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGATACAACGCACGTTG-CTGCCTCG---TAGTCGTTGT------CTG----TCTGTCGTTG-----------------------------------------------------------------TCC------TTTGGTG----------GTG-CTGCCAGA-G-------------------------A--------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCCCGGACGATACAAC................................................................................................................................................................................................1912.002200000
droWil2
---------CAGGCGCATGCGTT---GTATCCTGCGCCGTGGAA-AGCTCA-----------------------TT-C----------GGTCGGTCCCCTGCT---------------CGCTTGGTTGGACGGGCAGCGTATC--A---------TCAG-CATTCCAGGCT---------------GAATACCGACAAAA-T--------------------------------------------------------------------------AACGG-TATAC------------------------------------------CAGGCGA---------------------------------GT-------------A-GC-------------GC-----TT--ACC-----ATAGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACACAACGCACGCTTGCCTACT-T-GCTGTCCGTTGGC--------GTTGTCTGGCCTCT-------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCCGGACGACACAACGCAC............................................................................................................................................................................................2218.00880000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTTGGC--------GTTGTCTGGCC..............................................................................................................................................2015.00550000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT-T-GCTGTCCGTTGGC--------GTTGTCTGGCCT.............................................................................................................................................2912.00220000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTTTGCTCCTGCCCGGAC........................................................................................................................................................................................................2112.00220000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCCCGGACGACACAACGCA.............................................................................................................................................................................................2212.00220000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTTGGC--------GTTGTCTGGCCT.............................................................................................................................................2112.00220000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTGCCCGGACGACACAACGCACGCT.........................................................................................................................................................................................2911.00110000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCCGGACGACACAACGCACGCTT........................................................................................................................................................................................2611.00110000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCGGACGACACAACGCACG...........................................................................................................................................................................................2211.00100001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCCCGGACGACACAA.................................................................................................................................................................................................1811.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGGACGACACAACGCACGCT.........................................................................................................................................................................................2211.00110000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCCCGGACGACACAACGCAC............................................................................................................................................................................................2311.00110000
droVir3
ATGGAGGCGC------ATGCGTC---ATGTCCTGCGCCGTGGAA-AACGCA-----------------------CGGC----------AGACGTTTAGCTAC--------------------------------GAGC-------T-----------GG-AATTCCAGGCT---------------GAATACCGACAAAA-AAG-----------------------------------------------------------------------TAACGG-TA-------ACGG------------------------------------------------------------C-----AG--CAGCGC-------------G-GC-----G--------C-----GA--A-C-----AGCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACACAACGCACGCTG-CCAA-------TTGCTGTCGTT--------GTCGTCGGCCGCCCAAAA-----AA-GCAAAAGAAAACTGAAAATTCG--------A----GGA----------AAAACTTGCTGTATTTT--------------G----TGCAAAA--AATTAAAC------------GAAAAA--------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................G--CAGCGC-------------G-GC-----G--------C-----GA--A-C-----AGCGC........................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
droMoj3
GCCACAG-GCAGGCGCATGCGTC---ATGTCCTGCGCCGTGGAA-AGCTC------------------------CG-----AA--------------------------------AGA-----------GACCTGAGC-------T-----------GG-AATTCCAGCCT---------------GAATACCGACAAAAAC-ACACACACACAGCCACAGCCGCAGCAGCAGCAGCAGCAGCGACAGCAGCAGCAGCAGCAGAAGAAATGAAAATAACGG-TATAG--------------------------------------------------------------------C-----AG--CAGCTA-------------C-GT-------------GC-----GA--G-C-----AGCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACACAACGCACGCTG-CCAACT---G-CTGCTGTCGTT--------GC------TCACTTTGCA-----A----------------------------------------AATCCATAAAAT---------------------------------------AA--------------AATAGAAAAGAAAA--------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---G-CTGCTGTCGTT--------GC------TCACTTT..........................................................................................................................................2311.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCCCGGACGACACAACGCACGCTG-C......................................................................................................................................................................................2811.001001000
...................................................................................................................................................................................................................................................................................................................................................................................................T-------------GC-----GA--G-C-----AGCGCCAGACAGAAGT.............................................................................................................................................................................................................................2311.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTCCTGCCCGGACGACACAAC................................................................................................................................................................................................2411.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTG-CCAACT---G-CTGCTGTC....................................................................................................................................................................2011.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................GT-------------GC-----GA--G-C-----AGCGCCAGACAGA................................................................................................................................................................................................................................2111.001000100
....................................................................................................................................................................................................................CAGCCACAGCCGCAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................22100.101100000
.................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
.........................................................................................................................................................................................................................ACAGCCGCAGCAGCAGCAGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000100
.........................................................................................................................................................................................................................................CAGCAGCAGCGACAGCAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAGCGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
droGri2
GTGGAGGCGC------ATGCGTCA--TAATCCTGCGCCGTGGAA-AGCTTA-----------------------CGGCTTGATACGGGAGAC---TCGCGAC-----------------------------GTGCTGC-------T----------TGG-AATTCCAGGCT---------------GAATACCGACAAAA-T--------------------------------------------------------------------------AACGG-TATAC--------------------------------------------------------------------A-----AG--CAGCGT-------------T-GG-------------GC-----CA--G-C-----AGCGCCAGACAGAAGTTACCTTTGCTCCTGCCCGGACGACACAACGCACGCTG-CCATTT---G-CTGTCGTTGTCGTTGTCTGGCC-TCGGCCTCCCACAC-----AC--------------------------ACACA--------ACTACACAAAAGAAAAT-----------------------------T-CT--------------------AGAAAAAAAAA--------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:41 PM