ID:

dsi_5622

 Coordinate:

node_67530:612-674 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.2 -4.9 -4.8

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. x:20276157-20276183 +
  2. dsi_5622  node_67530:616-642 +
  3. node_110186:22-48 +
  4. dsi_26732  node_56121:188-214 +
  5. node_133276:11-37 -
star

Sense Strand Reads

GTCAATGGCTCATATAAAACACCGGCTCCACTTGCTCGAACGCGATACGTGTACTTATGACATAATGCTTTCAGTTGCGCTTTAAGTATTTATAGCTTGATTTTTATTTCCAGGAAAGCTTTTTATAAGTAGGCTGCGAAATTATTTTCAAATCAGACGAAAT
**************************************************.............(((((((..(((...)))..))))))).......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 O001
Testis
 M053
female body
 SRR902008
ovaries
 SRR902009
testis
 M025
embryo
 O002
Head
 GSM343915
embryo
........................................................................................................TATTTCCAGGAAAGCTTTTTATAAGTA................................ 27 0 4 87.00 348 51 134 22 99 22 0 20 0 0 0 0 0
..........................................................................................................TTTCCAGGAAAGCTTTTTATAAGTA................................ 25 0 4 69.25 277 10 0 132 135 0 0 0 0 0 0 0 0
........................................................................................................TATTTCCAGGAAAGCTTTTTATAAG.................................. 25 0 4 42.00 168 24 36 4 26 68 0 8 0 0 0 0 2
.............................................TACGTGTACTTATGACATAATGCT.............................................................................................. 24 0 5 34.60 173 65 61 15 1 3 26 0 0 0 2 0 0
......................................................TTATGACATAATGCTTTCAGTTGCGCT.................................................................................. 27 0 5 30.80 154 9 1 52 78 2 0 11 0 0 1 0 0
.....................................................................TTCAGTTGCGCTTTAAGTATTTATAGCT.................................................................. 28 0 3 26.67 80 21 46 4 9 0 0 0 0 0 0 0 0
..........................TCCACTTGCTCGAACGCGATACGTG................................................................................................................ 25 0 3 26.00 78 25 10 7 1 27 0 7 0 0 1 0 0
.......................................................................................................TTATTTCCAGGAAAGCTTTTTATAAGTA................................ 28 0 3 22.67 68 30 34 3 1 0 0 0 0 0 0 0 0
...................................TCGAACGCGATACGTGTACTTATGACA..................................................................................................... 27 0 5 18.80 94 24 6 41 8 6 0 1 8 0 0 0 0
............................................................................................................TCCAGGAAAGCTTTTTATAAGTAGGC............................. 26 0 4 18.00 72 4 3 1 6 55 0 2 0 0 0 0 1
......................................................TTATGACATAATGCTTTCAGTTGCGC................................................................................... 26 0 5 17.80 89 1 0 30 24 13 0 19 0 0 0 0 2
.............................................TACGTGTACTTATGACATAATGCTTT............................................................................................ 26 0 5 16.00 80 36 32 7 3 0 0 2 0 0 0 0 0
.............................................TACGTGTACTTATGACATAATGCTT............................................................................................. 25 0 5 13.80 69 17 15 6 2 2 26 1 0 0 0 0 0
..........................................................................................................TTTCCAGGAAAGCTTTTTATAAGTAGGC............................. 28 0 4 13.25 53 0 3 3 45 1 0 1 0 0 0 0 0
..........................................................................................................................TTATAAGTAGGCTGCGAAATTATT................. 24 0 4 12.75 51 11 13 9 2 4 0 0 10 2 0 0 0
.......................................................................CAGTTGCGCTTTAAGTATTTATAGCT.................................................................. 26 0 3 11.33 34 16 10 7 1 0 0 0 0 0 0 0 0
...........................................................................................................TTCCAGGAAAGCTTTTTATAAGTAGGC............................. 27 0 4 10.50 42 9 7 4 10 8 0 2 1 0 0 0 1
......................................................................TCAGTTGCGCTTTAAGTATTTATAGCT.................................................................. 27 0 3 10.33 31 18 7 5 1 0 0 0 0 0 0 0 0
.......................................................................CAGTTGCGCTTTAAGTATTTATTGATT................................................................. 27 2 2 10.00 20 16 3 1 0 0 0 0 0 0 0 0 0
......................................................TTATGACATAATGCTTTCAGTTGCGCTT................................................................................. 28 0 5 9.60 48 0 1 16 16 4 0 9 0 0 2 0 0
........................................................................................................TATTTCCAGGAAAGCTTTTTATAA................................... 24 0 4 9.50 38 1 1 0 1 2 33 0 0 0 0 0 0
.......................................................................................................TTATTTCCAGGAAAGCTTTTTATAAG.................................. 26 0 3 8.67 26 6 20 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TAGGCTGCGAAATTATTTTCAAATCAGA...... 28 0 3 8.67 26 16 4 4 2 0 0 0 0 0 0 0 0
..........................TCCACTTGCTCGAACGCGA...................................................................................................................... 19 0 3 8.00 24 9 10 0 1 4 0 0 0 0 0 0 0
.................................................................................................................GAAAGCTTTTTATAAGTAGGC............................. 21 0 4 8.00 32 0 0 0 0 0 32 0 0 0 0 0 0
.....................................................................TTCAGTTGCGCTTTAAGTATTTATAGC................................................................... 27 0 3 7.67 23 13 6 4 0 0 0 0 0 0 0 0 0
........................................................................................................TATTTCCAGGAAAGCTTTTTATAAGT................................. 26 0 4 7.50 30 5 4 0 1 6 0 13 0 0 1 0 0
.............................................TACGTGTACTTATGACATAATGC............................................................................................... 23 0 5 6.60 33 3 2 1 0 1 0 0 0 0 0 26 0
................................................................................................TTGATTTTTATTTCCAGGAAAGCTTT......................................... 26 0 2 6.50 13 8 2 2 1 0 0 0 0 0 0 0 0
.......................................................TATGACATAATGCTTTCAGTTGCGCT.................................................................................. 26 0 5 6.20 31 11 8 8 1 0 0 2 1 0 0 0 0
..........................TGCACTTGCTCGAACGCGATACGTG................................................................................................................ 25 1 3 6.00 18 11 6 1 0 0 0 0 0 0 0 0 0
.................................................................................................TGATTTTTATTTCCAGGAAAGCTTT......................................... 25 0 3 6.00 18 6 1 8 0 2 0 1 0 0 0 0 0
........................................................................................................TATTTCCAGGAATGCTTTTTATAAGTA................................ 27 1 4 6.00 24 14 9 1 0 0 0 0 0 0 0 0 0
...........................................................................................................TTCCAGGAAAGCTTTTTATAAGTA................................ 24 0 4 6.00 24 7 4 5 6 1 0 1 0 0 0 0 0
......................................................................................................................................TGCGAAATTATTTTCAAATCAGACGAAA. 28 0 5 6.00 30 5 3 9 8 0 0 4 0 0 1 0 0
.......................................................TATGACATAATGCTTTCAGTTGCGC................................................................................... 25 0 5 5.80 29 2 0 0 0 0 25 2 0 0 0 0 0
..........................TCCACTTGCTCGAACGCG....................................................................................................................... 18 0 3 5.67 17 3 8 1 0 5 0 0 0 0 0 0 0
........................................................................................................TATTTCCAGGAAAGCTTTTTATAAGTAGGC............................. 30 0 4 5.50 22 1 17 0 4 0 0 0 0 0 0 0 0
..........................................................................................................TTTCCAGGAAAGCTTTTTATAAGTAGG.............................. 27 0 4 5.25 21 1 0 13 7 0 0 0 0 0 0 0 0
.............................................TACGTGTACTTATGACATAAT................................................................................................. 21 0 5 5.20 26 0 0 0 0 0 26 0 0 0 0 0 0
..........................TCCACTTGCTCGAACGCGATACGTGTA.............................................................................................................. 27 0 3 5.00 15 4 1 2 0 7 0 1 0 0 0 0 0
......................................................TTATGACATAATGCTTTCAG......................................................................................... 20 0 6 4.50 27 0 0 0 0 0 27 0 0 0 0 0 0
..........................................................................................................................TTATAAGTAGGCTGCGAAATTATTT................ 25 0 4 4.50 18 7 5 2 1 2 0 0 1 0 0 0 0
.....................................................................TTCAGTTGCGCTTTAAGTATTTAT...................................................................... 24 0 4 4.50 18 16 1 1 0 0 0 0 0 0 0 0 0
................................TGCTCGAACGCGATACGTGTACTTATGACA..................................................................................................... 30 0 3 4.33 13 1 6 0 6 0 0 0 0 0 0 0 0
..........................................................................................................................TTATAAGTAGGCTGCGAAATTATTTT............... 26 0 4 4.00 16 6 5 0 2 1 0 0 2 0 0 0 0
......................................................TTATGACATAATGCTTTCAGTTGCG.................................................................................... 25 0 5 3.80 19 1 0 2 12 1 0 2 0 0 1 0 0
......................CGGCTCCACTTGCTCGAACGCGATA.................................................................................................................... 25 0 3 3.67 11 1 6 3 1 0 0 0 0 0 0 0 0
.......................................................TATGACATAATGCTTTCAGTTGCGCTT................................................................................. 27 0 5 3.60 18 8 1 0 3 1 0 5 0 0 0 0 0
.......................................................................................................................TTTTTATAAGTAGGCTGCGAAATT.................... 24 0 3 3.33 10 3 2 1 1 0 0 0 3 0 0 0 0
................................TGCTCGAACGCGATACGTGTACTTATGAC...................................................................................................... 29 0 3 3.33 10 3 0 1 4 0 0 0 1 1 0 0 0
................................TGCTCGAACGCGATACGTGTA.............................................................................................................. 21 0 4 3.25 13 1 0 9 3 0 0 0 0 0 0 0 0
..............................................................................................................CAGGAAAGCTTTTTATAAGTAGGC............................. 24 0 4 3.25 13 0 1 1 2 9 0 0 0 0 0 0 0
........................................CGCGATACGTGTACTTATGACATAATGC............................................................................................... 28 0 5 3.20 16 2 0 8 5 0 0 0 0 0 1 0 0
.........................................................TGACATAATGCTTTCAGTTGCGCTTT................................................................................ 26 0 5 2.80 14 4 1 7 0 2 0 0 0 0 0 0 0
......................................................TTATGACATAATGCTTTCAGTTGC..................................................................................... 24 0 5 2.80 14 2 0 6 6 0 0 0 0 0 0 0 0
...........................................................................................................................TATAAGTAGGCTGCGAAATTATTTTC.............. 26 0 4 2.75 11 5 1 2 1 0 0 0 1 1 0 0 0
..........................................................................................................TTTCCAGGAAAGCTTTTTGTAAGTAGGC............................. 28 1 4 2.75 11 0 0 3 8 0 0 0 0 0 0 0 0
........................................................................................................................TTTTATAAGTAGGCTGCGAAATTATT................. 26 0 4 2.75 11 1 2 5 2 1 0 0 0 0 0 0 0
.....................................................................TTCAGTTGCGCTTTAAGTATTTATTGA................................................................... 27 2 3 2.67 8 6 2 0 0 0 0 0 0 0 0 0 0
.....................................................................TTCAGTTGCGCTTTAAGTATTTATA..................................................................... 25 0 4 2.50 10 0 8 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................TTTATAAGTAGGCTGCGAAATTATT................. 25 0 4 2.50 10 5 2 2 0 1 0 0 0 0 0 0 0
.........................................................................................................ATTTCCAGGAAAGCTTTTTATAAGTA................................ 26 0 4 2.50 10 1 5 1 3 0 0 0 0 0 0 0 0
.........................................................TGACATAATGCTTTCAGTTGCGCTT................................................................................. 25 0 5 2.40 12 3 0 4 0 3 0 2 0 0 0 0 0
.........................................................TGACATAATGCTTTCAGTTGCGCT.................................................................................. 24 0 5 2.40 12 11 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................TAGGCTGCGAAATTATTTTCAAAA.......... 24 1 3 2.33 7 6 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTTTTATTTCCAGGAAAGCTTTTTA...................................... 25 0 3 2.33 7 5 1 1 0 0 0 0 0 0 0 0 0
................................TGCTCGAACGCGATACGTGTACTTA.......................................................................................................... 25 0 3 2.33 7 0 0 3 0 0 0 0 4 0 0 0 0
..........................TCCACTTGCTCGAACGCGATA.................................................................................................................... 21 0 3 2.33 7 2 1 0 0 4 0 0 0 0 0 0 0
...........................................................................................................................TATAAGTAGGCTGCGAAATTA................... 21 0 4 2.25 9 0 0 0 0 0 0 0 0 9 0 0 0
......................................................................................................................................TGCGAAATTATTTTCAAATCAGACGAAAT 29 0 5 2.20 11 3 2 2 2 1 0 1 0 0 0 0 0
..........................TCCACTTGCTCGAACGCGATACG.................................................................................................................. 23 0 3 2.00 6 0 1 0 0 4 0 1 0 0 0 0 0
..........................TCCACTTGCTCGAACGCGATACGTGT............................................................................................................... 26 0 3 2.00 6 1 0 1 0 3 0 1 0 0 0 0 0
.....................................................................TTCAGTTGCGCTTTAAGTATTTGTT..................................................................... 25 2 4 2.00 8 8 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TTCAGTTGCGATTTAAGTATTTATAGCT.................................................................. 28 1 3 2.00 6 1 5 0 0 0 0 0 0 0 0 0 0
.....TGGCTCATATAAAACACCGGCTCCACT................................................................................................................................... 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
...........................................................................TGCGCTTTAAGTATTTATAGCTTGA............................................................... 25 0 2 2.00 4 2 1 1 0 0 0 0 0 0 0 0 0
.............................................TACGTGTACTTATGACATA................................................................................................... 19 0 5 2.00 10 3 0 2 0 5 0 0 0 0 0 0 0
........................................................................................TTTATAGCTTGATTTTTATTTCCAGGA................................................ 27 0 2 2.00 4 0 1 2 1 0 0 0 0 0 0 0 0
.......................................................................CAGTTGCGCTTTAAGTATTTATAGCTTGA............................................................... 29 0 2 2.00 4 3 1 0 0 0 0 0 0 0 0 0 0
.......................................................................CAGTTGCGATTTAAGTATTTATAGCT.................................................................. 26 1 3 2.00 6 6 0 0 0 0 0 0 0 0 0 0 0
.........TCATATAAAACACCGGCTCCACTTGCT............................................................................................................................... 27 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................TTTTTATAAGTAGGCTGCGAAATTATT................. 27 0 3 2.00 6 3 1 2 0 0 0 0 0 0 0 0 0
..........................TCCTCTTGCTCGAACGCGATACGTGTA.............................................................................................................. 27 1 3 2.00 6 1 1 3 1 0 0 0 0 0 0 0 0
......................................................TTATGACATAATGCTTTTAGTTGCGCT.................................................................................. 27 1 5 1.80 9 0 0 4 4 0 0 1 0 0 0 0 0
.............................................................................................................CCAGGAAAGCTTTTTATAAGTAGGC............................. 25 0 4 1.75 7 0 0 0 2 5 0 0 0 0 0 0 0
..........................................................................................................................TTATAAGTAGGCTGCGAAATTA................... 22 0 4 1.75 7 1 0 0 0 0 0 0 6 0 0 0 0
..........................................................................................................................TTATAAGTAGGCTGCGAAATTAT.................. 23 0 4 1.75 7 1 0 0 0 0 0 0 6 0 0 0 0
.....................................................................TTCAGTTGCGCTTTAAGTATTTATAG.................................................................... 26 0 3 1.67 5 3 1 1 0 0 0 0 0 0 0 0 0
..........................TCCACTTGCTCGAACGCGATACGTGTACT............................................................................................................ 29 0 3 1.67 5 2 1 0 0 0 0 0 0 0 2 0 0
.......................................................................................................................TTTTTATAAGTAGGCTGCGAAATTA................... 25 0 3 1.67 5 0 1 1 3 0 0 0 0 0 0 0 0
..........................TCCTCTTGCTCGAACGCGATACGTG................................................................................................................ 25 1 3 1.67 5 2 0 1 2 0 0 0 0 0 0 0 0
......................CGGCTCCACTTGCTCGAACGCGAT..................................................................................................................... 24 0 3 1.67 5 0 0 2 0 1 0 0 1 0 1 0 0
.............................................................................................................................TAAGTAGGCTGCGAAATTATTTTCA............. 25 0 3 1.67 5 4 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TAGGCTGCGAAATTATTTTCAAA........... 23 0 3 1.67 5 4 1 0 0 0 0 0 0 0 0 0 0
................................TGCTCGAACGCGATACGTGTACTTATGA....................................................................................................... 28 0 3 1.67 5 1 0 2 1 0 0 0 1 0 0 0 0
..........................................................................................................................TTATAAGTAGGCTGCGAAATTATTTTCA............. 28 0 3 1.67 5 0 2 1 2 0 0 0 0 0 0 0 0
......................................................................TCAGTTGCGCTTTAAGTATTTATAGC................................................................... 26 0 3 1.67 5 3 0 0 0 0 0 2 0 0 0 0 0
.....................CCGGCTCCACTTGCTCGAACGCGATA.................................................................................................................... 26 0 3 1.67 5 3 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................TATAAGTAGGCTGCGAAATTATTTTCA............. 27 0 3 1.67 5 1 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................TAGGCTGCGAAATTATTTTCA............. 21 0 3 1.67 5 2 3 0 0 0 0 0 0 0 0 0 0
..........................TCCACTTGGTCGAACGCGATA.................................................................................................................... 21 1 3 1.67 5 1 1 1 2 0 0 0 0 0 0 0 0
..........................TCCACTTGCTCGAACGCGATACGTGTAC............................................................................................................. 28 0 3 1.67 5 1 0 0 0 3 0 1 0 0 0 0 0
.............................................TACGTGTACTTATGACATAATGCTTTCAGT........................................................................................ 30 0 5 1.60 8 1 7 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTTGATTTTTATTTCCAGGAAAGCTT.......................................... 26 1 2 1.50 3 1 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................TATAGCTTGACTTTTATTTCCAGGAA............................................... 26 1 2 1.50 3 1 1 1 0 0 0 0 0 0 0 0 0
..................................................................................TAAGTATTTATAGCTTGATTTTTATA....................................................... 26 1 2 1.50 3 2 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................TTCCAGGAATGCTTTTTATAAGTA................................ 24 1 4 1.50 6 3 2 1 0 0 0 0 0 0 0 0 0
..................................................................................TAAGTATTTATAGCTTGATTTTTA......................................................... 24 0 2 1.50 3 0 0 3 0 0 0 0 0 0 0 0 0
....................................................................TTTCAGTTGCGCTTTAAGTATTTA....................................................................... 24 0 4 1.50 6 4 1 1 0 0 0 0 0 0 0 0 0
...............................TTGGTCGAACGCGATACGTGTAC............................................................................................................. 23 1 4 1.50 6 0 0 2 2 2 0 0 0 0 0 0 0
..........................................................................................TATAGCTTGATTTTTATTTCCAGGA................................................ 25 0 2 1.50 3 1 0 2 0 0 0 0 0 0 0 0 0
........................................................................................................TATTTCCAGGAAAGC............................................ 15 0 5 1.40 7 0 0 0 0 7 0 0 0 0 0 0 0
......................................................................................................................................TGCGAAATTATTTTCAAATCAGACGA... 26 0 5 1.40 7 1 0 3 2 1 0 0 0 0 0 0 0
...................................TCGAACGCGATACGTGTACTTATGAC...................................................................................................... 26 0 5 1.40 7 1 0 2 1 3 0 0 0 0 0 0 0
.......................................................................................................TTATTTCCAGGAAAGCTTTTTATAAGT................................. 27 0 3 1.33 4 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................TTTCAGTTGCGCTTTAAGTATTTATAGCT.................................................................. 29 0 3 1.33 4 0 2 0 2 0 0 0 0 0 0 0 0
......................CGGCTCTACTTGCTCGAACGCGATA.................................................................................................................... 25 1 3 1.33 4 3 1 0 0 0 0 0 0 0 0 0 0
..........................TCCACTTGCTCGAACGC........................................................................................................................ 17 0 3 1.33 4 1 1 0 0 2 0 0 0 0 0 0 0
..........................TCTACTTGCTCGAACGCGATACGTG................................................................................................................ 25 1 3 1.33 4 4 0 0 0 0 0 0 0 0 0 0 0
..........................TCCACTTGCTCGAACGCGATAC................................................................................................................... 22 0 3 1.33 4 0 0 0 0 1 0 0 3 0 0 0 0
.....................CCGGCTCCACTTGCTCGAACGCGAT..................................................................................................................... 25 0 3 1.33 4 3 1 0 0 0 0 0 0 0 0 0 0
..........................TCCACTTGCTCGAACGCGTT..................................................................................................................... 20 1 3 1.33 4 1 1 0 0 1 0 1 0 0 0 0 0
..........................TCCACTTGCTCGAACGCGAC..................................................................................................................... 20 1 3 1.33 4 0 2 0 0 0 0 0 0 0 2 0 0
.............................................................................................................................TAAGTAGGCTGCGAAATTATT................. 21 0 4 1.25 5 0 0 0 0 0 0 0 0 5 0 0 0
............................................................................................................TCCAGGAAAGCTTTTTGTAAGTAGGC............................. 26 1 4 1.25 5 0 0 1 4 0 0 0 0 0 0 0 0
...........................................................................................................................TATAAGTAGGCTGCGAAATTATTTT............... 25 0 4 1.25 5 1 1 1 0 0 0 0 1 1 0 0 0
..........................................................................................................TTTCCAGGAAAGCTTTTTGTAAGTAGG.............................. 27 1 4 1.25 5 0 0 3 2 0 0 0 0 0 0 0 0
...........................................................................................................TTCCAGGAAAGCTTTTTGTAAGTAGGC............................. 27 1 4 1.25 5 0 0 3 2 0 0 0 0 0 0 0 0
..........................................................................................................................TTATAAGTAGGCTGCGAAATTATTTTC.............. 27 0 4 1.25 5 1 2 2 0 0 0 0 0 0 0 0 0
...............................TTGCTCGAACGCGATACGTGTA.............................................................................................................. 22 0 4 1.25 5 1 0 4 0 0 0 0 0 0 0 0 0
...............................TTGCTCGAACGCGATACGTGTAC............................................................................................................. 23 0 4 1.25 5 0 0 2 0 3 0 0 0 0 0 0 0
.............................................TACGTGTACTTATGACATAATGTT.............................................................................................. 24 1 5 1.20 6 4 2 0 0 0 0 0 0 0 0 0 0
......................................................TTATGACATAATGCTTTCAGTT....................................................................................... 22 0 6 1.17 7 1 0 3 0 3 0 0 0 0 0 0 0
......................................................TTATGACATAATGCTTTCAGTTG...................................................................................... 23 0 6 1.17 7 2 0 3 1 0 0 1 0 0 0 0 0
.....................................................................................................TTTTATTTCCAGGAAAGCTTTTTA...................................... 24 0 3 1.00 3 0 1 2 0 0 0 0 0 0 0 0 0
.....................................................................TTCAGTTGCGCTTTAAGTATTTATT..................................................................... 25 1 4 1.00 4 3 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................TTTGATTTTTATTTCCAGGAAAGCTTTT........................................ 28 1 2 1.00 2 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................TAGGCTGCGAAATTATTTTCAAAT.......... 24 0 3 1.00 3 2 0 0 0 1 0 0 0 0 0 0 0
..CAATGGCTCATATAAAACACC............................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
........................ACTCCACTTGCTCGAACGCGATACG.................................................................................................................. 25 1 3 1.00 3 0 0 0 0 0 0 0 0 0 3 0 0
.................................................................................................TGATTTTTATTTCCAGGAAAGCTT.......................................... 24 0 3 1.00 3 1 0 1 0 1 0 0 0 0 0 0 0
....ATGGCTCATATAAAACACCGGCTC....................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................TTATAAGTAGGCTGCGAAATTATTTTCAAA........... 30 0 3 1.00 3 1 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TTTCCAGGAAAGCTTTTTATAAG.................................. 23 0 4 1.00 4 0 0 1 3 0 0 0 0 0 0 0 0
.................................................................................TTAAGTATTTATAGCTTGATTTTTA......................................................... 25 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................TTTATTTCCAGGAAAGCTTTTTATAAGTA................................ 29 0 3 1.00 3 0 3 0 0 0 0 0 0 0 0 0 0
....ATGGCTCATATAAAACACCGGCTCCA..................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.........TCATATAAAACACCGGCTCCACTTGG................................................................................................................................ 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................TCCTCTTGCTCGAACGCG....................................................................................................................... 18 1 3 1.00 3 0 3 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTATAGCTTGACTTTTATTTCCAGGAA............................................... 27 1 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0
....................................................ACTTATGACATAATGCTTTCAGTTGCGCT.................................................................................. 29 0 5 1.00 5 2 0 2 0 0 0 1 0 0 0 0 0
...........................................................................................................TTCCAGGAAAGCTTTTTATAAGTAGG.............................. 26 0 4 1.00 4 0 0 2 0 2 0 0 0 0 0 0 0
........................................................................................TTTATAGCTTGATTTTTATTTCCAGGAA............................................... 28 0 2 1.00 2 0 1 1 0 0 0 0 0 0 0 0 0
.TCAATGGCTCATATAAAACACCGGC......................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AGCTTGATTTTTATTTCCAGGAAAGC............................................ 26 0 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0 0
..........................TCCACTTGGTCGAACGCGA...................................................................................................................... 19 1 3 1.00 3 3 0 0 0 0 0 0 0 0 0 0 0
............TATAAAACACCGGCTCCACTTGCTCGA............................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................TGCGCTTAAAGTATTTATAGCTTGATTTT........................................................... 29 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................TATTTATAGCTTGATTTTTATTTCCAGGA................................................ 29 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................TCAGTTGCGCTTAAAGTATTTATAGCT.................................................................. 27 1 3 1.00 3 0 0 2 1 0 0 0 0 0 0 0 0
...........................................................................TGCGCTTTAAGTATTTATAGCTTGAT.............................................................. 26 0 2 1.00 2 0 0 1 0 1 0 0 0 0 0 0 0
................................................................................................TTGATTTTTATTTCCAGGAAAGCTT.......................................... 25 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTTTTATAAGTAGGCTGCGAAATTAT.................. 26 0 3 1.00 3 0 0 1 0 0 0 0 2 0 0 0 0
...............................................................................................TTTGATTTTTATTTCCAGGAAAGCTTT......................................... 27 1 2 1.00 2 0 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................TTATTTCCAGGAAAGCTTTTTATA.................................... 24 0 3 1.00 3 0 3 0 0 0 0 0 0 0 0 0 0
.....................................................................TTCAGTTGCGCTTTAAGTATTTA....................................................................... 23 0 4 1.00 4 2 0 1 1 0 0 0 0 0 0 0 0
....................................CGAACGCGATACGTGTACTTATGACATA................................................................................................... 28 0 5 1.00 5 0 0 4 1 0 0 0 0 0 0 0 0
.....................CCGGCTCCACTTGCTCGAACGCGACA.................................................................................................................... 26 1 3 1.00 3 1 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................TATTTCCAGGAAAGCTTTTTATA.................................... 23 0 4 1.00 4 0 0 0 1 3 0 0 0 0 0 0 0
.......................................................................CAGTTGCGCTTTAAGTATTTATAGCTT................................................................. 27 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TTATTTCCAGGAATGCTTTTTATAAGTA................................ 28 1 3 1.00 3 0 3 0 0 0 0 0 0 0 0 0 0
.......................................................................TAGTTGCGCTTTAAGTATTTATAGCT.................................................................. 26 1 3 1.00 3 0 0 3 0 0 0 0 0 0 0 0 0
..........................TCCACTTGCTCGAACGCGACA.................................................................................................................... 21 1 3 1.00 3 1 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................TATTTCCAGGAAAGCTTTTTGTAAG.................................. 25 1 4 1.00 4 0 0 2 2 0 0 0 0 0 0 0 0
......................CGGCTCCTCTTGCTCGAACGCGATA.................................................................................................................... 25 1 3 1.00 3 0 0 2 0 0 0 0 1 0 0 0 0
..........................................................................................................................TTGTAAGTAGGCTGCGAAATTATT................. 24 1 4 1.00 4 0 0 1 2 0 0 0 0 1 0 0 0
...............................TTGGTCGAACGCGATACGTGTA.............................................................................................................. 22 1 4 1.00 4 0 0 3 1 0 0 0 0 0 0 0 0
..............TAAAACACCGGCTCCACTTGCTCGAACGC........................................................................................................................ 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
......GGCTCATATAAAACACCGGCTCCACT................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................TGACATAATGCTTTCAGTTGCGCTTTA............................................................................... 27 0 5 0.80 4 1 0 1 0 1 0 0 0 0 1 0 0
......................................................................................................................................TGCGAAATTATTTTCAAATCAGACGAA.. 27 0 5 0.80 4 0 0 1 0 0 0 2 1 0 0 0 0
.................................................................TGCTTTCAGTTGCGCT.................................................................................. 16 0 5 0.80 4 0 0 0 0 4 0 0 0 0 0 0 0
.............................................TACGTGTACTTATGACATAATGCTTTC........................................................................................... 27 0 5 0.80 4 0 2 1 0 1 0 0 0 0 0 0 0
......................................................TTATGACATAATGCTTTTAGTTGCGCTT................................................................................. 28 1 5 0.80 4 0 0 2 2 0 0 0 0 0 0 0 0
......................................................................TCAGTTGCGCTTTAAGTA........................................................................... 18 0 5 0.80 4 3 0 0 0 1 0 0 0 0 0 0 0
......................................................TTATGACATAATGCTTTTAGTTGCGC................................................................................... 26 1 5 0.80 4 0 0 0 3 0 0 1 0 0 0 0 0
......................................................................................................................................TGCGAAATTATTTTCAAGTCAGACGA... 26 1 5 0.80 4 0 0 3 0 0 0 0 1 0 0 0 0
.........................................................................................................................TTTATAAGTAGGCTGCGAAATTA................... 23 0 4 0.75 3 0 2 0 0 0 0 0 1 0 0 0 0
........................................................................................................................TTTTATAAGTAGGCTGCGAAATTA................... 24 0 4 0.75 3 0 1 1 0 0 0 0 1 0 0 0 0
................................TGCTCGAACGCGATACGTG................................................................................................................ 19 0 4 0.75 3 0 0 1 0 2 0 0 0 0 0 0 0
..........................................................................................................TTTCCAGGAAAGCTTTTTATAAGTAA............................... 26 1 4 0.75 3 0 0 0 3 0 0 0 0 0 0 0 0
.............................ACTTGCTCGAACGCGATACGTGTA.............................................................................................................. 24 0 4 0.75 3 0 0 1 0 2 0 0 0 0 0 0 0
....................................................................TTTCAGTTGCGCTTTAAGAATTTATA..................................................................... 26 1 4 0.75 3 0 0 1 2 0 0 0 0 0 0 0 0
............................................................................................................................ATAAGTAGGCTGCGAAATTAT.................. 21 0 4 0.75 3 0 0 0 0 0 0 0 0 3 0 0 0
...........................................................................................................TTCCAGGAAAGCTTTTTAT..................................... 19 0 4 0.75 3 1 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TTTCCAGGAAAGCTTTTTAT..................................... 20 0 4 0.75 3 0 0 1 2 0 0 0 0 0 0 0 0
..............................................................................................................CAGGAAAGCTTTTTATAAG.................................. 19 0 4 0.75 3 0 0 0 0 3 0 0 0 0 0 0 0
.............................ACTTGCTCGAACGCGATACGTG................................................................................................................ 22 0 4 0.75 3 0 0 0 0 3 0 0 0 0 0 0 0
...........................................................................................................................TATAAGTAGGCTGCGAAATTATT................. 23 0 4 0.75 3 0 2 0 1 0 0 0 0 0 0 0 0
............................................................................................................................ATAAGTAGGCTGCGAAATTA................... 20 0 4 0.75 3 0 0 0 0 0 0 0 0 3 0 0 0
............................................................................................................TCCAGGAAAGCTTTTTATAAGTAGG.............................. 25 0 4 0.75 3 0 1 0 0 2 0 0 0 0 0 0 0
.....................................................................TTCAGTTGCGCTTTGAGTATTTATA..................................................................... 25 1 4 0.75 3 1 0 0 2 0 0 0 0 0 0 0 0
..........................................................................................................TTTCCAGGAAAGCTTTTTGTAAGTAG............................... 26 1 4 0.75 3 0 0 2 1 0 0 0 0 0 0 0 0
....................................................................TTTCAGTTGCGCTTTAAGTATTTATA..................................................................... 26 0 4 0.75 3 1 1 0 0 1 0 0 0 0 0 0 0
................................TGGTCGAACGCGATACGTGTACTTATGA....................................................................................................... 28 1 3 0.67 2 1 0 1 0 0 0 0 0 0 0 0 0
......................CGGCTCCACTTGCTCGAACGCGATACG.................................................................................................................. 27 0 3 0.67 2 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................TCAGTTGCGCTTTAAGTATGTATAGCT.................................................................. 27 1 3 0.67 2 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TAGGCTGCGAAATTATTTTCAAATT......... 25 1 3 0.67 2 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................TGATTTTTATTTCCAGGAAAGCTTTT........................................ 26 0 3 0.67 2 0 0 1 0 1 0 0 0 0 0 0 0
.....................................................................................................TTTTATTTCCAGGAAAGCTTTTTATA.................................... 26 0 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................TTTAAGTATTTATAGCTTG................................................................ 19 0 3 0.67 2 0 0 0 0 2 0 0 0 0 0 0 0
.............................................................................................................................TAAGTAGGCTGCGAAATTATTTTCAAA........... 27 0 3 0.67 2 1 1 0 0 0 0 0 0 0 0 0 0
..........................TCCACTTGGTCGAACGCGATACGTG................................................................................................................ 25 1 3 0.67 2 0 1 1 0 0 0 0 0 0 0 0 0
........................................................................AGTTGCGCTTTAAGTATTTATTGA................................................................... 24 2 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTTTATTTCCAGGAATGCTTTTTATA.................................... 26 1 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................CAGTTGCGCTTTAAGTATTTATTGA................................................................... 25 2 3 0.67 2 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................CAGTTGCGCTTTAAGTATGTATAGCT.................................................................. 26 1 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0
......................................................................TCAGTTGCGATTTAAGTATTTATAGCT.................................................................. 27 1 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0
......................CGGCTCCACTTGCTCGAACGCGA...................................................................................................................... 23 0 3 0.67 2 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................TTTATTTCCAGGAATGCTTTTTATAAGTA................................ 29 1 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................TTCAGTTGCGCTTTAAGTATGTATAGCT.................................................................. 28 1 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0
...............................TTGGTCGAACGCGATACGTGTACTTA.......................................................................................................... 26 1 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TGATTTTTATTTCCAGGAAAGCT........................................... 23 0 3 0.67 2 0 0 1 0 1 0 0 0 0 0 0 0
..........................TCTACTTGCTCGAACGCG....................................................................................................................... 18 1 3 0.67 2 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TATAAGTAGGCTGCGAAATTATTTTCAAAA.......... 30 1 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0
.................................................................................TTAAGTATTTATAGCTTG................................................................ 18 0 3 0.67 2 0 0 0 0 2 0 0 0 0 0 0 0
..........................TGCACTTGCTCGAACGCGATACGTGTA.............................................................................................................. 27 1 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0
..........................TCCACTTGCTCGAACGCGAATT................................................................................................................... 22 3 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TTTATTTCCAGGAAAGCTTTTTGTAAG.................................. 27 1 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0 0
..........................TCTACTTGCTCGAACGCGATACGTGTACT............................................................................................................ 29 1 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TTCAGTTGCGCTTAAAGTATTTATAGCT.................................................................. 28 1 3 0.67 2 0 0 0 2 0 0 0 0 0 0 0 0
..........................TCCTCTTGCTCGAACGCGA...................................................................................................................... 19 1 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................TTTAGTTGCGCTTTAAGTATTTATAGC................................................................... 27 1 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0
..........................TCCACTTGGTCGAACGCGAT..................................................................................................................... 20 1 3 0.67 2 0 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................GGCTGCGAAATTATTTTCAAATCAGA...... 26 0 3 0.67 2 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................TAAGTAGGCTGCGAAATTATTTTCAA............ 26 0 3 0.67 2 0 0 1 0 0 0 0 1 0 0 0 0
................................TGGTCGAACGCGATACGTGTACTTATGAC...................................................................................................... 29 1 3 0.67 2 1 1 0 0 0 0 0 0 0 0 0 0
........................................CGCGATACGTGTACTTATGACATAAT................................................................................................. 26 0 5 0.60 3 1 1 0 1 0 0 0 0 0 0 0 0
.....................................GAACGCGATACGTGTACTTATGAC...................................................................................................... 24 0 5 0.60 3 0 0 0 0 3 0 0 0 0 0 0 0
....................................CGAACGCGATACGTGTACTTATGACA..................................................................................................... 26 0 5 0.60 3 0 0 0 1 1 0 0 1 0 0 0 0
......................................................TTATGACATAATGCTTTCAGTTGCGCG.................................................................................. 27 1 5 0.60 3 2 0 0 1 0 0 0 0 0 0 0 0
.......................................................TATGACATAATGCTTTCAGTTGCG.................................................................................... 24 0 5 0.60 3 0 2 0 0 0 0 1 0 0 0 0 0
......................................................TTATGACATAATGCTTTCAGTTGCGCTA................................................................................. 28 1 5 0.60 3 1 0 1 1 0 0 0 0 0 0 0 0
.................................................................TGCTTTCAGTTGCGCTTTAAGTATT......................................................................... 25 0 5 0.60 3 1 0 0 0 1 0 0 0 0 1 0 0
..................................................................................TAAGTATTTATAGCTTGATTTTTAAAA...................................................... 27 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................TAGTTGCGCTTTAAGTATTTATTGATT................................................................. 27 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................TATAGCTTGATTTTTATTTCCAGGAAA.............................................. 27 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTATAAGTAGGCTGCGAAATTATAAA............... 26 3 4 0.50 2 0 0 0 0 0 0 0 2 0 0 0 0
........................................................................................................TATTTCCAGGAAAGCTTTTTGTAAGTA................................ 27 1 4 0.50 2 0 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................TTTTATAAGTAGGCTGCGAAATTAT.................. 25 0 4 0.50 2 0 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................................TTTCCAGGAAAGCTTTTTATAAGT................................. 24 0 4 0.50 2 0 1 0 1 0 0 0 0 0 0 0 0
......................................................................TCAGTTGCGCTTTAAGTATTTAT...................................................................... 23 0 4 0.50 2 0 0 2 0 0 0 0 0 0 0 0 0
............................CACTTGCTCGAACGCGATACGTGTACT............................................................................................................ 27 0 4 0.50 2 0 0 0 0 0 0 2 0 0 0 0 0
.........................................................................................TTATAGCTTGATTTTTATTTCCAGGA................................................ 26 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................TTTATAAGTAGGCTGAGAAATTATTT................ 26 1 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TAAGTATTTATAGCTTGACTTTTATT....................................................... 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TTTATAAGTAGGCTGCGAAATTAT.................. 24 0 4 0.50 2 0 0 0 0 0 0 0 1 1 0 0 0
...............................TTGCTCGAACGCGATACGTG................................................................................................................ 20 0 4 0.50 2 0 0 0 1 1 0 0 0 0 0 0 0
.............................TCTTGCTCGAACGCGATACGTGTAC............................................................................................................. 25 1 4 0.50 2 0 0 0 2 0 0 0 0 0 0 0 0
..........................................................................................................................TTATAAGTAGGCTGCGAAATTATTA................ 25 1 4 0.50 2 0 0 0 0 0 0 0 2 0 0 0 0
............................CACTTGCTCGAACGCGA...................................................................................................................... 17 0 4 0.50 2 0 2 0 0 0 0 0 0 0 0 0 0
.............................ACTTGCTCGAACGCGATACGTGT............................................................................................................... 23 0 4 0.50 2 0 0 1 0 1 0 0 0 0 0 0 0
................................................................................TTTAAGTATTTATAGCTTGATTTTAAAA....................................................... 28 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TAGCTTGATTTTTATTTCCAGGAAAGC............................................ 27 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................TGCGCTTTGAGTATTTATAGCTTGAT.............................................................. 26 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................TTTTTATAGTAGGCTGCGAAATTATT................. 26 3 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................AGTTGCGCTTTAAGTATTTATTGATT................................................................. 26 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................TCAGTTGCGCTTTAAGTATTTGTT..................................................................... 24 2 4 0.50 2 0 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TGATTTGATTTTTATTTCCAGGAAAGC............................................ 27 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................TTGATTTTTATTTCCAGAAAAGCTTT......................................... 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................TTGCTCGAACGCGATACGTGT............................................................................................................... 21 0 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TAAGTAGGCTGCGAAATTATTTT............... 23 0 4 0.50 2 1 0 0 0 0 0 0 1 0 0 0 0
..................................................................................TAAGTATTTAAAGCTTGATTTTTATT....................................................... 26 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................TAAGTATTTATAGCTTGATTTTTATT....................................................... 26 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................ATTTCCAGGAAAGCTTTTTATAAGTAGGC............................. 29 0 4 0.50 2 0 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................TATTTCCAGGAAAGCTT.......................................... 17 0 4 0.50 2 0 0 0 0 2 0 0 0 0 0 0 0
................................TGCTCGAACGCGATACGTGTAC............................................................................................................. 22 0 4 0.50 2 0 0 0 0 2 0 0 0 0 0 0 0
..............................................................................................................CAGGAAAGCTTTTTATAAGTAGGCT............................ 25 0 4 0.50 2 0 0 2 0 0 0 0 0 0 0 0 0
................................................................................................TTGATTTTTATTTCCAGGAAAGCTTTT........................................ 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................ACTTGCTCGAACGCGATACGTGTACT............................................................................................................ 26 0 4 0.50 2 1 0 0 0 0 0 0 1 0 0 0 0
.....................................................................TTCAGTTGCGCTTTAAGAATTTATA..................................................................... 25 1 4 0.50 2 0 0 1 1 0 0 0 0 0 0 0 0
.................................................................................TTAAGTATTTATAGCTTGATTTTTATTT...................................................... 28 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................TTGATTTTTATTTCCAGGAAAGCTTTTT....................................... 28 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................TGTATAGCTTGACTTTTATTTCCAGGA................................................ 27 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................TTGCGCTTTAAGTATTTATAGCTTGACT............................................................. 28 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TTCCAGGAAAGCTTTTTATAAGTAG............................... 25 0 4 0.50 2 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTTTTATAAGTAGGCTGCGAAA...................... 22 0 4 0.50 2 0 0 0 0 0 0 0 0 2 0 0 0
...........................................................................TGCGATTTAAGTATTTATAGCTTGA............................................................... 25 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................TCGAACGCGATACGTGTACTTATGACAT.................................................................................................... 28 0 5 0.40 2 1 1 0 0 0 0 0 0 0 0 0 0
...................................................TACTTATGACATAATGCTTTCAGTTGCGC................................................................................... 29 0 5 0.40 2 1 0 0 0 0 0 1 0 0 0 0 0
...............................................CGTGTACTTATGACATAATGCTTT............................................................................................ 24 0 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0 0
..............................................ACGTGTACTTATGACATAATGCTTT............................................................................................ 25 0 5 0.40 2 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................TTTTTATAAGTAGGCTGCGAA....................... 21 0 5 0.40 2 0 0 1 0 0 0 0 0 1 0 0 0
................................................................ATGCTTTCAGTTGCGCTT................................................................................. 18 0 5 0.40 2 0 0 0 0 2 0 0 0 0 0 0 0
........................................................................................................TATTTCCAGGAAAGCT........................................... 16 0 5 0.40 2 0 0 0 0 2 0 0 0 0 0 0 0
................................................................ATGCTTTCAGTTGCGC................................................................................... 16 0 5 0.40 2 0 0 0 0 2 0 0 0 0 0 0 0
.......................................................TATGACATAATGCTTTCAGTTGCGATT................................................................................. 27 1 5 0.40 2 1 1 0 0 0 0 0 0 0 0 0 0
.......................................ACGCGATACGTGTACTTATGACATA................................................................................................... 25 0 5 0.40 2 1 0 0 1 0 0 0 0 0 0 0 0
......................................................TTATGACATAATGCTTTCAGTTGCGT................................................................................... 26 1 5 0.40 2 0 0 2 0 0 0 0 0 0 0 0 0
........................................CGCGATACGTGTACTTATGACATAATGCT.............................................................................................. 29 0 5 0.40 2 0 0 2 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CAGTTACCGAGTATATTTTGTGGCCGAGGTGAACGAGCTTGCGCTATGCACATGAATACTGTATTACGAAAGTCAACGCGAAATTCATAAATATCGAACTAAAAATAAAGGTCCTTTCGAAAAATATTCATCCGACGCTTTAATAAAAGTTTAGTCTGCTTTA
**************************************************.............(((((((..(((...)))..))))))).......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 M025
embryo
.....................GGCCGAGGTGAACGAGCTTGCGCT...................................................................................................................... 24 0 3 36.33 109 84 0 0 0 0 0 21 2 1 1 0
.........................................................................................................................................CTTTAATAAAAGTTTAGT........ 18 0 5 36.00 180 0 135 0 45 0 0 0 0 0 0 0
......................................TTGCGCTATGCACATGAATACTGTAT................................................................................................... 26 0 5 35.00 175 0 0 134 0 6 10 0 4 18 3 0
....................TGGCCGAGGTGAACGAGCTTGCGCT...................................................................................................................... 25 0 3 31.33 94 80 0 0 0 0 0 13 1 0 0 0
................................ACGAGCTTGCGCTATGCACATGA............................................................................................................ 23 0 4 29.50 118 0 0 8 54 27 27 0 0 2 0 0
......................................................................................................................................ACGCTTTAATAAAAGTTTAGT........ 21 0 5 26.40 132 0 132 0 0 0 0 0 0 0 0 0
....................TGGCCGAGGTGAACGAGCTTGCGCTAT.................................................................................................................... 27 0 3 12.33 37 34 0 0 0 0 0 3 0 0 0 0
...............................................................................................................................TCATCCGACGCTTTAATAAAAGTTTAGT........ 28 0 3 12.33 37 0 37 0 0 0 0 0 0 0 0 0
..............................GAACGAGCTTGCGCTATGCACATGA............................................................................................................ 25 0 4 10.75 43 0 0 4 0 21 6 0 7 2 1 2
.............................................................................................TCGAACTAAAAATAAAGGTCC................................................. 21 0 2 10.50 21 0 0 0 20 0 0 0 1 0 0 0
.........................................................................CAACGCGAAATTCATAAATATCGAACT............................................................... 27 0 2 10.00 20 0 20 0 0 0 0 0 0 0 0 0
............................................................................................................................................TAATAAAAGTTTAGTCTGCTTT. 22 0 5 9.40 47 0 0 0 0 22 25 0 0 0 0 0
.......................................................................................................................................CGCTTTAATAAAAGTTTAGT........ 20 0 5 8.80 44 0 44 0 0 0 0 0 0 0 0 0
.................................CGAGCTTGCGCTATGCACATGA............................................................................................................ 22 0 5 8.60 43 0 0 0 27 7 8 0 1 0 0 0
.....................GGCCGAGGTGAACGAGCTTGCGCTAT.................................................................................................................... 26 0 3 8.33 25 18 0 0 0 0 0 3 1 3 0 0
.............................................ATGCACATGAATACTGTATTACGAAAGT.......................................................................................... 28 0 5 8.20 41 0 0 16 0 11 9 0 0 5 0 0
...............................AACGAGCTTGCGCTATGCACATGA............................................................................................................ 24 0 4 7.75 31 0 0 1 0 13 14 0 1 2 0 0
....................TGGCCGAGGTGAACGAGCTTGCGCTA..................................................................................................................... 26 0 3 6.33 19 17 0 0 0 0 0 2 0 0 0 0
................................................................TACGAAAGTCAACGCGAAATTCAT........................................................................... 24 0 5 6.00 30 2 0 0 25 0 0 0 3 0 0 0
...................GTGGCCGAGGTGAACGAGCTTGCGCT...................................................................................................................... 26 0 1 6.00 6 5 0 0 0 0 0 1 0 0 0 0
....................TGGCCGAGGTGAACGAGCTTGCGC....................................................................................................................... 24 0 3 6.00 18 16 0 0 0 0 0 2 0 0 0 0
....................................GCTTGCGCTATGCACATGAATACTGTAT................................................................................................... 28 0 5 5.40 27 0 0 0 26 0 0 0 1 0 0 0
..........................................................................................................................................TTTAATAAAAGTTTAGTCTGCTTT. 24 0 5 5.40 27 0 0 0 0 10 16 0 0 0 1 0
.....ACCGAGTATATTTTGTGGCCGAGGT..................................................................................................................................... 25 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0
....TACCGAGTATATTTTGTGGCCGAGGT..................................................................................................................................... 26 0 1 5.00 5 2 0 0 0 0 0 3 0 0 0 0
................................ACGAGCTTGCGCTATGCACATGAAT.......................................................................................................... 25 0 3 4.33 13 0 0 4 0 3 3 0 0 3 0 0
.................................................................ACGAAAGTCAACGCGAAATTCATAAAT....................................................................... 27 0 4 4.00 16 6 0 4 0 1 1 0 0 4 0 0
.......................................................................................................................................CGCTTTAATAAAAGTTTAGTCTGCTTT. 27 0 5 3.60 18 0 0 0 0 13 5 0 0 0 0 0
........................................GCGCTATGCACATGAATACTGTAT................................................................................................... 24 0 5 3.60 18 0 0 13 0 0 0 0 0 4 1 0
...........................................................................................................................................TTAATAAAAGTTTAGTCTGCTTT. 23 0 5 3.40 17 0 0 0 0 9 8 0 0 0 0 0
....................TGGCCGAGGTGAACGAGTTTGCGCT...................................................................................................................... 25 1 3 3.33 10 7 0 0 0 0 0 3 0 0 0 0
......................................TTGCGCTATGCACATGAATACTGT..................................................................................................... 24 0 5 3.20 16 0 0 8 0 1 3 0 0 4 0 0
.......................................TGCGCTATGCACATGAATACTGTAT................................................................................................... 25 0 5 3.20 16 0 0 5 0 0 1 0 6 1 3 0
......................................TTGCGCTATGCACATGAATACTGTATT.................................................................................................. 27 0 5 2.60 13 1 0 6 0 3 2 0 0 1 0 0
................................ACGAGCTTGCGCTATGCACATGAA........................................................................................................... 24 0 3 2.33 7 0 0 2 0 3 2 0 0 0 0 0
.....................GGCCGAGGTGAACGAGTTTGCGCT...................................................................................................................... 24 1 3 2.33 7 5 0 0 0 0 0 2 0 0 0 0
...................ATGGCCGAGGTGAACGAGCTTGCGCT...................................................................................................................... 26 1 3 2.33 7 6 0 0 0 0 0 1 0 0 0 0
......................................TTGCGCTATGCACATGAATACTGTA.................................................................................................... 25 0 5 2.20 11 0 0 4 0 2 1 0 0 4 0 0
................TTTGTGGCCGAGGTGAACGAGCTT........................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.......CGAGTATATTTTGTGGCCGAGGTGAA.................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................CGAAAAATATTCATCCGACGCTTTAAT................... 27 0 3 2.00 6 3 0 0 0 0 0 0 1 0 2 0
...................GTGGCCGAGGTGAACGAGCTTGCGC....................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................CTAAAAATAAAGGTCC................................................. 16 0 4 2.00 8 0 0 0 0 0 0 0 8 0 0 0
....................................................................................................................TCGAAAAATATTCATCCGACGCTT....................... 24 0 5 1.80 9 0 0 5 0 0 0 0 0 4 0 0
..............................GAACGAGCTTGCGCTATGCACATGAAT.......................................................................................................... 27 0 3 1.67 5 0 0 4 0 0 0 0 1 0 0 0
.....................GGCCGAGGTGAACGAGCTTGCGCTA..................................................................................................................... 25 0 3 1.67 5 2 0 0 0 0 0 2 1 0 0 0
............................................................................................ATCGAACTAAAAATAAAGGTCCT................................................ 23 0 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0
........................................................................................AAATATCGAACTAAAAATAAAGGTCCT................................................ 27 0 2 1.50 3 2 0 0 0 0 0 1 0 0 0 0
........................................................................................AAATATCGAACTAAAAATAAAGGTC.................................................. 25 0 2 1.50 3 0 0 0 0 3 0 0 0 0 0 0
..............................................................ATTACGAAAGTCAACGCGAAATTCAT........................................................................... 26 0 5 1.40 7 3 0 1 0 0 0 1 1 1 0 0
.......................................AGCGCTATGCACATGAATACTGTAT................................................................................................... 25 1 5 1.40 7 0 0 5 0 0 0 0 0 2 0 0
........................CGAGGTGAACGAGCTTGCGCTATGCAC................................................................................................................ 27 0 3 1.33 4 0 0 1 0 1 2 0 0 0 0 0
....................TGGCCGAGGTGAACGAGTTTGCGCTAT.................................................................................................................... 27 1 3 1.33 4 3 0 0 0 0 0 1 0 0 0 0
......................GCCGAGGTGAACGAGCTTGCGCT...................................................................................................................... 23 0 3 1.33 4 1 0 0 0 1 0 2 0 0 0 0
................................ACGAGCTTGCGCTATGCACATGAATACT....................................................................................................... 28 0 3 1.33 4 1 0 1 0 0 0 0 0 2 0 0
..................................................................CGAAAGTCAACGCGAAATTCATAAAT....................................................................... 26 0 4 1.25 5 0 0 5 0 0 0 0 0 0 0 0
.................................................................ACGAAAGTCAACGCGAAATTCATAA......................................................................... 25 0 5 1.20 6 2 0 1 0 0 0 0 2 1 0 0
.....................................................GAATACTGTATTACGAAAGTCAACGC.................................................................................... 26 0 5 1.00 5 0 0 1 0 4 0 0 0 0 0 0
.................TTGTGGCCGAGGTGAACGAGC............................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................GAACGAGCTTGCGCTATGCACATGAA........................................................................................................... 26 0 3 1.00 3 0 0 0 0 0 0 0 2 0 1 0
.....................GGCCGAGGTGAATGAGCTTGCGCT...................................................................................................................... 24 1 3 1.00 3 3 0 0 0 0 0 0 0 0 0 0
...TTACCGAGTATATTTTGTGGCCGAGGT..................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..............ATTTTGTGGCCGAGGTGAACGAGCT............................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................TTGTGGCCGAGGTGAACGAGCTT........................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......CGAGTATATTTTGTGGCCGAGGT..................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................TAAAAATAAAGGTCC................................................. 15 0 6 1.00 6 0 0 0 0 0 1 0 5 0 0 0
.................TTTTGGCCGAGGTGAACGAGCTT........................................................................................................................... 23 1 3 1.00 3 0 0 0 0 0 0 3 0 0 0 0
..................TGTGGCCGAGGTGAACGAGCTT........................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................TATCGAACTAAAAATAAAGGTCCT................................................ 24 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
...................ATGGCCGAGGTGAACGAGTTTGCGCT...................................................................................................................... 26 2 3 1.00 3 1 0 0 0 0 0 2 0 0 0 0
......ACGAGTATATTTTGTGGCCGAGGT..................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
........................................................TACTGTATTACGAAAGTCAACGCGA.................................................................................. 25 0 5 1.00 5 0 0 0 0 1 2 0 1 1 0 0
.................................................................ACGAAAGTCAACGCGAAATTCAT........................................................................... 23 0 5 1.00 5 0 0 0 0 0 0 0 3 2 0 0
.....................GGCCGAGGTGAACGAGCTTGCGC....................................................................................................................... 23 0 3 1.00 3 3 0 0 0 0 0 0 0 0 0 0
...................GTGGCCGAGGTGAACGAGCTT........................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................TGTGGCCGAGGTGAACGAGCTTGCGC....................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................AAATATCGAACTAAAAATAAAGGTCC................................................. 26 0 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0
.....................GGCCGAGGTGAACGAGTTTGCGC....................................................................................................................... 23 1 3 1.00 3 1 0 0 0 0 0 2 0 0 0 0
..............................................................................................CGAACTAAAAATAAAGGTCC................................................. 20 0 2 1.00 2 0 0 0 0 0 0 0 2 0 0 0
...................TTGGCCGAGGTGAACGAGCTTGCGCT...................................................................................................................... 26 1 3 1.00 3 2 0 0 0 0 0 1 0 0 0 0
..........................AGGTGAACGAGCTTGCGCTATGCACATGA............................................................................................................ 29 0 3 1.00 3 0 0 0 0 3 0 0 0 0 0 0
.......CGAGTATATTTTGTGGCCGA........................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.....................GGCCGAGGTGAACGAGTTTGCGCTAT.................................................................................................................... 26 1 3 1.00 3 2 0 0 0 0 0 1 0 0 0 0
................................................................TACGAAAGTCAACGCGAAATTCATAAAT....................................................................... 28 0 4 1.00 4 4 0 0 0 0 0 0 0 0 0 0
....................AGGCCGAGGTGAACGAGCTTGCGCT...................................................................................................................... 25 1 3 1.00 3 0 0 0 0 0 0 3 0 0 0 0
................................................................TACGAAAGTCAACGCGAAATTCATAA......................................................................... 26 0 5 1.00 5 3 0 0 0 0 0 0 2 0 0 0
.........AGTATATTTTGTGGCCGAGGT..................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................TTACGAAAGTCAACGCGAAATTCATAA......................................................................... 27 0 5 1.00 5 4 0 0 0 0 0 0 1 0 0 0
.....ACCGAGTATATTTTGTGGCCGAGG...................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.............................................ATGCACATGAATACTGTATTACGAAAGTC......................................................................................... 29 0 5 1.00 5 0 0 3 0 1 1 0 0 0 0 0
..................TGTGGCCGAGGTGAACGAGCTTGCGCT...................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................CTTGCGCTATGCACATGAATACTGTAT................................................................................................... 27 0 5 1.00 5 0 0 4 0 0 0 0 0 1 0 0
.......................................................ATACTGTATTACGAAAGTCAACGC.................................................................................... 24 0 5 1.00 5 0 0 1 0 2 1 0 0 1 0 0
.......................................................................................AAAATATCGAACTAAAAATAAAGGTCC................................................. 27 1 2 1.00 2 1 0 0 0 0 0 0 1 0 0 0
......................................TTGCGCTATGCACATGAATACTGTGT................................................................................................... 26 1 5 0.80 4 0 0 3 0 0 0 0 0 1 0 0
.........................................CGCTATGCACATGAATACTGTAT................................................................................................... 23 0 5 0.80 4 0 0 1 0 0 0 0 1 1 1 0
.............................TGAACGAGCTTGCGCTATGCACATGA............................................................................................................ 26 0 4 0.75 3 0 0 0 0 2 1 0 0 0 0 0
............................................................................................................AGGTCCTTTCGAAAAATATTCATCCG............................. 26 0 4 0.75 3 0 0 1 0 0 2 0 0 0 0 0
...........................GGTGAACGAGCTTGCGCTATGCACATGA............................................................................................................ 28 0 4 0.75 3 0 0 0 0 3 0 0 0 0 0 0
.................................CGAGCTTGCGCTATGCACATGAAT.......................................................................................................... 24 0 4 0.75 3 0 0 0 0 1 1 0 1 0 0 0
............................................................................................................AGGTCCTTTCGAAAAATATTCATCCGA............................ 27 0 4 0.75 3 0 0 0 0 3 0 0 0 0 0 0
.....................................................................AAGTCAACGCGAAATTCATAAATAT..................................................................... 25 0 4 0.75 3 1 0 0 0 1 1 0 0 0 0 0
......................................................................AGTCAACGCGAAATTCATAAATATC.................................................................... 25 0 3 0.67 2 0 0 0 0 0 0 2 0 0 0 0
.............................AGAACGAGCTTGCGCTATGCACATGAAT.......................................................................................................... 28 1 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0
...................ATGGCCGAGGTGAACGAGCTTGCGC....................................................................................................................... 25 1 3 0.67 2 1 0 0 0 0 0 1 0 0 0 0
.......................CCGAGGTGAACGAGCTTGCGCTATGC.................................................................................................................. 26 0 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0
.....................GGCCGAGGAGAACGAGCTTGCGCT...................................................................................................................... 24 1 3 0.67 2 1 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................ATTCATCCGACGCTTTAATAAAAGTTT........... 27 0 3 0.67 2 0 0 0 0 0 0 0 0 0 2 0
........................AGAGGTGAACGAGCTTGCGCTAT.................................................................................................................... 23 1 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CTTTAATAAAAGGTTAGTCTGCTTT. 25 1 6 0.67 4 0 0 0 0 1 3 0 0 0 0 0
................................ACGAGCTTGCGCTATGCACATGAATACTGT..................................................................................................... 30 0 3 0.67 2 0 0 1 0 1 0 0 0 0 0 0
.......................................................ATACTGTATTACGAAAGTCAACGCGAAAT............................................................................... 29 0 5 0.60 3 0 0 2 0 0 0 1 0 0 0 0
.........................................................AATGTATTACGAAAGTCAACGCGAAAT............................................................................... 27 1 5 0.60 3 3 0 0 0 0 0 0 0 0 0 0
..........................................................CTGTATTACGAAAGTCAACGCGAAATT.............................................................................. 27 0 5 0.60 3 2 0 0 0 0 0 0 1 0 0 0
......................................TTGCGCTATGCGCATGAATACTGTAT................................................................................................... 26 1 5 0.60 3 0 0 3 0 0 0 0 0 0 0 0
...................................................................................................................TTCGAAAAATATTCATCCGACGCTT....................... 25 0 5 0.60 3 2 0 0 0 0 0 0 1 0 0 0
.....................................................GAATACTGTATTACGAAAGTCAACGCGA.................................................................................. 28 0 5 0.60 3 0 0 2 0 1 0 0 0 0 0 0
...............................................................TTACGAAAGTCAACGCGAAATTCATAAA........................................................................ 28 0 5 0.60 3 3 0 0 0 0 0 0 0 0 0 0
..............................................................................................CGAACTAAAAATAAAGGTCCTT............................................... 22 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................CCTATATCGAACTAAAAATAAAGGTCC................................................. 27 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
........................................................................................AAATATCGAACTGAAAATAAAGGTC.................................................. 25 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
..............................GAACGAGCTTGCGCTATGCACAT.............................................................................................................. 23 0 4 0.50 2 0 0 0 0 0 0 2 0 0 0 0
........................................................................................................................AAAATATTCATCCGACGCTTTAAT................... 24 0 4 0.50 2 1 0 0 0 0 0 0 0 0 1 0
....................................................................................TCATAAATATCGAACTAAAAATAAAGGT................................................... 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.................................CGAGCTTGCGCTATGCACATGAA........................................................................................................... 23 0 4 0.50 2 0 0 0 0 0 0 0 2 0 0 0
.....................................................................................................................CGAAAAATATTCATCCGACGCTTTA..................... 25 0 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0
.................................................................................AATTCATAAATATCGAACTGAAAAT......................................................... 25 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................AATTCATAAATATCGAACTAAAAGT......................................................... 25 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................TCGAATTAAAAATAAAGGTCCTT............................................... 23 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................TATCCAACTAAAAATAAAGGTCC................................................. 23 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................TCGAACTAAAAATAAAGGTCATT............................................... 23 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................ATATCGAACTAAAAATAAAGGTCCT................................................ 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..............................CAACGAGCTTGCGCTATGCACATGA............................................................................................................ 25 1 4 0.50 2 0 0 0 0 1 1 0 0 0 0 0
....................................................................................................................TCGAAAAATATTCATCCGACGCTTTA..................... 26 0 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................................ATCGAACTAAAAATAAAGGTCCTT............................................... 24 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................TCGAACTAAAAATAAAGGTCCTT............................................... 23 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
........................................................................................AAATATCGAACTAAAAATAAAGGTCCTT............................................... 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................CGAATTAAAAATAAAGGTCCTT............................................... 22 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................TAAATATCGAACTAAAAATAAAGGTCC................................................. 27 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................ATATCGAACTAAAAATAAAGGTCC................................................. 24 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................AGGTCCTTTCGAAAAATATTCATCCGACGC......................... 30 0 4 0.50 2 0 0 1 0 1 0 0 0 0 0 0
...........................................................................................TATCGAACTAAAAATAAAGGTTCT................................................ 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................ACAAATATCGAACTAAAAATAAAGGTCCT................................................ 29 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................TCATAAATATCGAACTGAAAAT......................................................... 22 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................TATCGAATTAAAAATAAAGGTCCTT............................................... 25 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................AGTTTAGTCTGCTTTA 16 0 7 0.43 3 0 0 0 0 0 0 0 3 0 0 0
....................................................................................................................................................GTTTAGTCTGCTTTA 15 0 7 0.43 3 0 0 0 0 0 0 0 3 0 0 0
.......................................TGCGCTATGCGCATGAATACTGTAT................................................................................................... 25 1 5 0.40 2 0 0 0 0 0 0 0 0 2 0 0
................................................................TACGAAAGTCAACGCGAAAT............................................................................... 20 0 5 0.40 2 0 0 0 0 0 0 0 2 0 0 0
................................................................TACGAAAGTCAACGCGA.................................................................................. 17 0 5 0.40 2 0 0 0 0 0 0 0 2 0 0 0
.....................................................................................................................CGAAAAATATTCATCCGACGCTT....................... 23 0 5 0.40 2 0 0 0 0 0 0 0 0 1 1 0
............................................................................................................................................TAATAAAAGTTTAGTCTGCTTTA 23 0 5 0.40 2 0 0 1 0 0 0 0 1 0 0 0
.......................................................................................................................................AGCTTTAATAAAAGTTTAGTCTGCTTT. 27 1 5 0.40 2 0 0 0 0 2 0 0 0 0 0 0
.....................................CTTGCGCTATGCACATGAATACT....................................................................................................... 23 0 5 0.40 2 1 0 0 0 0 1 0 0 0 0 0
.............................................ATGCACATGAATACTGTATTACGA.............................................................................................. 24 0 5 0.40 2 0 0 1 0 0 1 0 0 0 0 0
.........................................................ACTGTATTACGAAAGTCAACGCGAAA................................................................................ 26 0 5 0.40 2 0 0 0 0 0 0 0 1 1 0 0
..................................................................................................................TTTCGAAAAATATTCATCCGACGCTT....................... 26 0 5 0.40 2 0 0 0 0 0 0 1 0 0 1 0
.............................................ATGCACATGAATACTGTATTACGAAAAT.......................................................................................... 28 1 5 0.40 2 0 0 1 0 0 0 0 0 0 1 0
..........................................................CTGTATTACGAAAGTCAACGCGAAATTCAT........................................................................... 30 0 5 0.40 2 0 0 0 0 0 0 2 0 0 0 0
...............................................................TTACGAAAGTCAACGCGAAATTCAT........................................................................... 25 0 5 0.40 2 0 0 1 0 0 1 0 0 0 0 0
..........................................................CTGTATTACGAAAGTCAACG..................................................................................... 20 0 5 0.40 2 0 0 0 0 0 0 0 2 0 0 0
..................................................................CGAAAGTCAACGCGAAATTCAT........................................................................... 22 0 5 0.40 2 0 0 0 0 0 0 0 2 0 0 0
.................................................................ACGAAAGTCAACGCGAAATT.............................................................................. 20 0 5 0.40 2 0 0 0 0 0 0 0 2 0 0 0
.....................................ATTGCGCTATGCACATGAATACTGTAT................................................................................................... 27 1 5 0.40 2 0 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................................TGCTTTAATAAAAGTTTAGTCTGCTTT. 27 1 5 0.40 2 0 0 0 0 1 1 0 0 0 0 0
....................GGGCCGAGGTGAACGAGCTTGCGCTAT.................................................................................................................... 27 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0
................................ACGAGCTTGCGCTATGCACATGAATACTGTA.................................................................................................... 31 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
....................AGGCCGAGGTGAACGAGCTTGCGCTAT.................................................................................................................... 27 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
..........................AGGTGAACGAGCTTGCGCTATGCACAT.............................................................................................................. 27 0 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
......................GCCGAGGTGAACGAGCTTGCGCTAT.................................................................................................................... 25 0 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................TTCGAAAAATATTCATCCGCCGCTTTAA.................... 28 1 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0
..........................AGGAGAACGAGCTTGCGCTATGCACAT.............................................................................................................. 27 1 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
....................TGGCAGAGGTGAACGAGCTTGCGCT...................................................................................................................... 25 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
...................TAGGCCGAGGTGAACGAGCTTGCGCT...................................................................................................................... 26 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
.......................CCGAGGTGAACGAGCTTGCGCTAT.................................................................................................................... 24 0 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
.....................GGCCGAGGTGAACGAGCTTGCGCTATGCAC................................................................................................................ 30 0 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0
..............................TCACGAGCTTGCGCTATGCACATGAA........................................................................................................... 26 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0
..................GTTGGCCGAGGTGAACGAGCTT........................................................................................................................... 22 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
.....................GGCCGAGGTGAACGAGCTGGCGCT...................................................................................................................... 24 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
.....................GGCCGAGGTGAACGAGC............................................................................................................................. 17 0 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
....................TGGCCGAGGTGAATGAGCTTGCGCT...................................................................................................................... 25 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................AAAAATAAAGGTCCTTTCGAAAAATATTCAT................................ 31 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
.........................TAGGTGAACGAGCTTGCGCTATGCACATGA............................................................................................................ 30 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
...............................AACGAGCTTGCGCTATGCACATGAA........................................................................................................... 25 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................AAAATAAAGGTCCTTACGAAAAAT...................................... 24 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0
..........................AGGTGAACGAGCTTGCGCTATGCA................................................................................................................. 24 0 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0
....................TGGCCGAGGAGAACGAGCTTGCGCTATGC.................................................................................................................. 29 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0
.........................GAGGTGAACGAGCTTGCGCT...................................................................................................................... 20 0 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0
......................GCCGAGGTGAACGAGCTTGCGC....................................................................................................................... 22 0 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0
....................TGGCCGAGGTGAACGAGTTTGCGC....................................................................................................................... 24 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0
........................CGAGGTGAACCAGCTTGCGCTATGC.................................................................................................................. 25 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
..........................AGGAGAACGAGCTTGCGCTATGCACATGA............................................................................................................ 29 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................TCGAAAAATATTCATCCGACGCTTTAAT................... 28 0 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0
....................TGGCCGAGGTTAACCAGCTTGCGCT...................................................................................................................... 25 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
..........................AGGTGAACCAGCTTGCGCTATGCACATGA............................................................................................................ 29 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0
....................TGGCCGAGGTGAGCGAGCTTGCGCTAT.................................................................................................................... 27 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0
.....................GGCCCAGGTGAACGAGCTTGCGCT...................................................................................................................... 24 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
........................CGAGGTGAACGAGCTTGCGCTATGC.................................................................................................................. 25 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
................................ACGAGCTTGCGCTATGCACATGAATA......................................................................................................... 26 0 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
....................TGGCCGAGGTGAACCAGCTTGCGCT...................................................................................................................... 25 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0
...................ATGGCCGAGGTGAACGAGCT............................................................................................................................ 20 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
........................CGAGGAGAACGAGCTTGCGCTATGCAC................................................................................................................ 27 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
....................TGGCCGAGGTGAACGATCTTGCGCTA..................................................................................................................... 26 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
................................ACGAGCTTGCGCTATGCACATGAATAC........................................................................................................ 27 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
....................TGGCCGAGGTGAACGAGCTT........................................................................................................................... 20 0 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0
................................ACGACCTTGCGCTATGCACATGAATACT....................................................................................................... 28 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0
.......................................TGCGCTATGCACATGA............................................................................................................ 16 0 6 0.33 2 0 0 0 0 0 0 0 0 2 0 0
.............................................................................................CTAAACTAAAAATAAAGGTCCTT............................................... 23 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................CTAAAAATAAAGGTCCTTTCGAAAAAT...................................... 27 0 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
.........................GAGGTGAACGAGCTTGCGCTATGCACAT.............................................................................................................. 28 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
......................TCCGAGGTGAACGAGCTTGCGCTA..................................................................................................................... 24 1 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
.......................CCGAGGTGAACGAGC............................................................................................................................. 15 0 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
.........................GAGGTGAACGAGCTTGCGCTATGCAC................................................................................................................ 26 0 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0
....................TGGCCGAGGTGAACGAGCTTG.......................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................AAGTCAACGCGAAATTCATAAATAACT................................................................... 27 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
........................CGAGGTGAACGAGCTTGCGCTATAAC................................................................................................................. 26 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
........................CGAGGTGAACCAGCTTGCGCTATGCACAT.............................................................................................................. 29 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................CCGACGCTTTAATAAAAGTTTAGT........ 24 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0
........................CGAGGTGAACCAGCTTGCGCT...................................................................................................................... 21 1 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
.....................GGCCGAGGTGAACGAG.............................................................................................................................. 16 0 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
...................ATGGCCGAGGTGAACGAGCTTGCGCTAT.................................................................................................................... 28 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
....................TGGCCGAGGTGAACGGGCTTGCGCT...................................................................................................................... 25 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0
.....................GGCCGAGGTGAACGAGCT............................................................................................................................ 18 0 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
.....................GGCCGAGGTGAACCAGCTTGCGCTAT.................................................................................................................... 26 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
..........................ATGTGAACGAGCTTGCGCTATGCACATGA............................................................................................................ 29 1 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
...............................AACCAGCTTGCGCTATGCACATGAAT.......................................................................................................... 26 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0
........................CGAGGTGAACGAGCTTGCGCTATGCACAT.............................................................................................................. 29 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................AATATTCATCCGACGCTTTAAT................... 22 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
................................ACGAGCTTGCGCTATGCAAATGA............................................................................................................ 23 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................ACAATATTCATCCGACGCTTTAATAA................. 26 1 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0
..............................AAACGAGCTTGCGCTATGCACAT.............................................................................................................. 23 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................AGTCAACGCGAAATTCATAAAT....................................................................... 22 0 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................AAAGGTCCTTTCGAAAAATATTCATCCG............................. 28 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
.............................CGAACGAGCTTGCGCTATGCACATGA............................................................................................................ 26 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
.............................AGAACGAGCTTGCGCTATGCACATGA............................................................................................................ 26 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
................................TCGAGCTTGCGCTATGCACATGA............................................................................................................ 23 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................TTCGAAAAATATTCATCCGACGCTTTA..................... 27 0 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................GGTCCTTTCGAAAAATATTCAT................................ 22 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
...........................GGTGAACGAGCTTGCGCTATGCACAT.............................................................................................................. 26 0 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
.................................CGAGCTTGCGCTATGCACATGAATACTGT..................................................................................................... 29 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................CTAAAAATAAAGGTCCT................................................ 17 0 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
................................ATGAGCTTGCGCTATGCACATGAATACTGT..................................................................................................... 30 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
.............................TGAACCAGCTTGCGCTATGCACATGA............................................................................................................ 26 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
...........................GGAGAACGAGCTTGCGCTATGCACATGA............................................................................................................ 28 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
..............................GAACGAGCTTGCGCTATGCACATTA............................................................................................................ 25 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
.............................AGAACGAGCTTGCGCTATGCACAT.............................................................................................................. 24 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................TGAAAGTCAACGCGAAATTCATAAAT....................................................................... 26 1 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0
...........................GGTGAACGAGCTTGCGCTATGCACGTGA............................................................................................................ 28 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
..............................GAACGAGCTTGCGCTATACACATGA............................................................................................................ 25 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
............................GAGAACGAGCTTGCGCTATGCACAT.............................................................................................................. 25 1 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0
...........................AATGAACGAGCTTGCGCTATGCACATA............................................................................................................. 27 3 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................TAAAAATAAAGGTCCTTTCG............................................ 20 0 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0
.........AGTATATTTTTTGGCCGAGGT..................................................................................................................................... 21 1 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................AAAAAACATTCATCCGACGCTTTAAT................... 26 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
...........................GGAGAACGAGCTTGCGCTATGCACAT.............................................................................................................. 26 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
...............................TACGAGCTTGCGCTATGCACATGA............................................................................................................ 24 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................AAAGGTCCTTACGAAAAATATTCATCCGA............................ 29 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
.................................CGAGCTTGCGCTATGCACATGAATACT....................................................................................................... 27 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................AAAAAAACATTCATCCGACGCTTTAAT................... 27 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATCTGAAAAATATTCATCCGACGCTTT...................... 27 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0
.....................................................................AAGTCAACGCGAAACTCATAAAT....................................................................... 23 1 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0
...................................................................GAAAGTCAACGCGAAATTCATAAAT....................................................................... 25 0 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................AAAATATTCATCCGACGCTTTAATAA................. 26 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................TTACGAAAGTCAACGCGAAAT............................................................................... 21 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................CGCTATAATAAAAGTTTAGTCTGCTTT. 27 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................AAAATCAACGCGAAATTCAT........................................................................... 20 1 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
..................................GAGCTTGCGCTATGCACATGAATACTGT..................................................................................................... 28 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0
......................................TCGCGCTATGCACATGAATACTGTAT................................................................................................... 26 1 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................GAAAAACATTCATCCGACGCTT....................... 22 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0
.....................................TTTGCGCTATGCACATGAATACTGTAT................................................................................................... 27 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
.......................................AGCGCTATGCACATGAATACTGTATT.................................................................................................. 26 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
......................................TTGCGCTATGCACATGAATACTGCATT.................................................................................................. 27 1 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0
............................................................GTATTACGAAAGTCAACGCGAAATT.............................................................................. 25 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
.........................................................ACTGTATTACGAAAGTCAACGCGAA................................................................................. 25 0 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0
........................................................TACTGTATTACGAAAGTCAACGCTAAAT............................................................................... 28 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................CTGTATTACGAAAGTCAACGCGA.................................................................................. 23 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
................................................................TACGAAAGTCAACGCGAAATT.............................................................................. 21 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
......................................................AATACTGTATTACGAAAGTCAACGC.................................................................................... 25 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0
..........................................................CTGTATTACGAAAGTCAACGCGAAA................................................................................ 25 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
.................................................................TCGAAAGTCAACGCGAAAT............................................................................... 19 1 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
.....................GGCCGAGGTGAACGA............................................................................................................................... 15 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................TTTAATAAAAGTTTAGTCTGCTGT. 24 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
.............................................ATGCACATGAATACTGTATTACGAAAG........................................................................................... 27 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................CGACGCTTTAATAAAAGTTTAGTCTGC.... 27 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................GAATACTGTATTACGAAAATCAACGCGA.................................................................................. 28 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
.............................................ATGCGCATGAATACTGTATTACGAAAGT.......................................................................................... 28 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
......................................TAGCGCTATGCACATGAATACTGTAT................................................................................................... 26 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
..................................CAGCTTGCGCTATGCACATGAATACT....................................................................................................... 26 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TGCGCTATGCACATGAATACTGTATT.................................................................................................. 26 0 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................ACTGTATTACGAAAGTCAACGCGAAATT.............................................................................. 28 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................GAAAGTCAACGCGAAATTCAT........................................................................... 21 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
..................................GACCTTGCGCTATGCACATGAATACT....................................................................................................... 26 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
...................................AGCTTGCGCTATGCACATGAATACT....................................................................................................... 25 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
...................................ACCTTGCGCTATGCACATGAATACT....................................................................................................... 25 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
.............................................ATGCACATGAATACTGTATTACGAAA............................................................................................ 26 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
......................................TTGGGCTATGCACATGAATACTGTAT................................................................................................... 26 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
......................................TTGCGCTGTGCACATGAATACTGTAT................................................................................................... 26 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
........................................................TACTGTATTACGAAAGTCAACGCGAA................................................................................. 26 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................CGAAAGTCAACGCGAAATTCATAAA........................................................................ 25 0 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................TCGAAAAATATTCATCC.............................. 17 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
.......................................TTGCCTATGCACATGAATACTGTAT................................................................................................... 25 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 node_67530:562-724 + dsi_5622 GTCAATGGCTCATATAAAACACCGGCTCCACT------------TGCTCGAA-CGCGATACGTGTACTTATGACATAATGCTTTCAGTTGCGCTTTAAGTATTT--ATAGCTTGATTTTTATTTCCAGGAAA-GCTTTTTATAAGTAGGCTGCGAAATTATTTTCAAATCAGACGAAAT
droSec2 scaffold_613:3536-3698 + GTCAATGGCTCATATAAAAGACCGGCTCCACT------------TGCTCGAA-CGCGATACGTGTACTTATGACATAATGATTTCAGTTGCGCTTTAAGTATTT--ATAGCTTGATTTTTATTTCCAGGAAA-GCTTTTTATAAGTAGGCTGCGAAATTATTTTCAAATCAGACGAAAT
dm3 chr2L:12707454-12707629 + GTCCATGGACCAGATTAAAGTGCGGCTCCAACTGCACCAGATCGTGCTCGAATCGTGATGTGGGAACCCAAGCCATGATGATTTCAGTTG--CTTATAGTATTCTCACAGCCTTATTTTCATTTCCCGGAAATGCTTTTCTCAAGTAGACTGCGCAAATATTTTCGAAGATT-AGAAAT
droEre2 scaffold_4690:17708363-17708409 + AA------------------------------------------------------------------------------------------------------------------------------------CATATTGTAAGCGGGCTAACAAAATCTTTTCAAAATATACAATAT
droYak3 2L:9146464-9146626 + GCCCATGAACCAGATTAAAGTCCGGCTCCAATTGCACCAGATCGTGCTCGAAGCGCGTCTTGGGCACCCAAGCCATGATGCTTTCAGTTG--TTTCAAGTATTC--ACAGCTTGATTTTCATATCTAGGAAA-GCCCTTTTCAAGTAGACTGTGCAAATATTTTCGAA-----------
droBia1 scf7180000302255:162956-163017 + AT------------------------------------------------------------------------------------------------------------------TTTTATTTCCCGGGAA-AATACTTCCTAGGGTAGTGAGAAATTTATTTAAAGTCAGA--AAAA
droTak1 scf7180000413081:35804-35871 + AG------------------------------------------------------------------------------------------------GTGTTT--TTA-TTTGATTTATACTTCTCGGAAA-TTTTTAAAGATGTGGGCGCAGGAAACATTTTTAAA-----------
droRho1 scf7180000767056:589-641 + TA----------------------------------------------------------------------ATATCAAGCCATTAGCAGCTCTTTAAGTAGTT--ACAATTTGATTT--ATTTCCA----------------------------------------------------
droKik1 scf7180000302329:636362-636404 + CC----------------------------------------------------------------------------------------------------------------------------GGGAAT-ACACTTTACAGATTAGCTGGAAAATTATTTCCAAA-----------
droWil2 scf2_1100000004947:21424-21471 + TA-----------------------------------------------------------------------------------------------AATATTT--ATACCTTAGATTCTAGCTAAGAGAAA-ACTTCTTATTAGT---------------------------------
droMoj3 scaffold_6660:4872-4912 + TT---------------------------------------------------------------------------------------------------------------------TAACTCATAGATA-GCTTTATATAAGTAAGCTATAAAATT--------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GTCAATGGCTCATATAAAACACCGGCTCCACT------------TGCTCGAA-CGCGATACGTGTACTTATGACATAATGCTTTCAGTTGCGCTTTAAGTATTT--ATAGCTTGATTTTTATTTCCAGGAAA-GCTTTTTATAAGTAGGCTGCGAAATTATTTTCAAATCAGACGAAATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................TATTTCCAGGAAA-GCTTTTTATAAGTA................................27487.00348000200013499512222000000
.........................................................................................................................TTTCCAGGAAA-GCTTTTTATAAGTA................................25469.252770000000135101320000000
.......................................................................................................................TATTTCCAGGAAA-GCTTTTTATAAG..................................25442.00168000800362624468200000
..........................................................TACGTGTACTTATGACATAATGCT.................................................................................................24534.60173002026061165153000000
...................................................................TTATGACATAATGCTTTCAGTTGCGCT.....................................................................................27530.8015400111001789522000000
..................................................................................TTCAGTTGCGCTTTAAGTATTT--ATAGCT...................................................................28326.67800000004692140000000
..........................TCCACT------------TGCTCGAA-CGCGATACGTG...................................................................................................................25326.007800170010125727000000
......................................................................................................................TTATTTCCAGGAAA-GCTTTTTATAAGTA................................28322.67680000003413030000000
...............................................TCGAA-CGCGATACGTGTACTTATGACA........................................................................................................27518.80940001006824416080000
...........................................................................................................................TCCAGGAAA-GCTTTTTATAAGTAGGC.............................26418.0072000200364155100000
...................................................................TTATGACATAATGCTTTCAGTTGCGC......................................................................................26517.8089000190002413013200000
..........................................................TACGTGTACTTATGACATAATGCTTT...............................................................................................26516.00800002003233670000000
..........................................................TACGTGTACTTATGACATAATGCTT................................................................................................25513.806900012601521762000000
.........................................................................................................................TTTCCAGGAAA-GCTTTTTATAAGTAGGC.............................28413.2553000100345031000000
..........................................................................................................................................TTATAAGTAGGCTGCGAAATTATT.................24412.755100000013211940102000
....................................................................................CAGTTGCGCTTTAAGTATTT--ATAGCT...................................................................26311.33340000001011670000000
..........................................................................................................................TTCCAGGAAA-GCTTTTTATAAGTAGGC.............................27410.5042000200710948110000
...................................................................................TCAGTTGCGCTTTAAGTATTT--ATAGCT...................................................................27310.3331000000711850000000
...................................................................TTATGACATAATGCTTTCAGTTGCGCTT....................................................................................2859.60480029001160164000000
.......................................................................................................................TATTTCCAGGAAA-GCTTTTTATAA...................................2449.5038000033011102000000
......................................................................................................................TTATTTCCAGGAAA-GCTTTTTATAAG..................................2638.6726000000200600000000
.................................................................................................................................................TAGGCTGCGAAATTATTTTCAAATCAGA......2838.6726000000421640000000
..........................TCCACT------------TGCTCGAA-CGCGA.........................................................................................................................1938.0024000000101904000000
................................................................................................................................GAAA-GCTTTTTATAAGTAGGC.............................2148.0032000032000000000000
..................................................................................TTCAGTTGCGCTTTAAGTATTT--ATAGC....................................................................2737.6723000000601340000000
.......................................................................................................................TATTTCCAGGAAA-GCTTTTTATAAGT.................................2647.5030001130041506000000
..........................................................TACGTGTACTTATGACATAATGC..................................................................................................2356.6033000002620311000000
...............................................................................................................TTGATTTTTATTTCCAGGAAA-GCTTT.........................................2626.501300000021820000000
....................................................................TATGACATAATGCTTTCAGTTGCGCT.....................................................................................2656.2031000200811180010000
................................................................................................................TGATTTTTATTTCCAGGAAA-GCTTT.........................................2536.001800010010682000000
..........................................................................................................................TTCCAGGAAA-GCTTTTTATAAGTA................................2446.002400010046751000000
......................................................................................................................................................TGCGAAATTATTTTCAAATCAGACGAAA.2856.003000140038590000000
....................................................................TATGACATAATGCTTTCAGTTGCGC......................................................................................2555.8029000225000200000000
..........................TCCACT------------TGCTCGAA-CGCG..........................................................................................................................1835.671700000080315000000
.......................................................................................................................TATTTCCAGGAAA-GCTTTTTATAAGTAGGC.............................3045.5022000000174100000000
.........................................................................................................................TTTCCAGGAAA-GCTTTTTATAAGTAGG..............................2745.2521000000071130000000
..........................................................TACGTGTACTTATGACATAAT....................................................................................................2155.2026000026000000000000
..........................TCCACT------------TGCTCGAA-CGCGATACGTGTA.................................................................................................................2735.001500010010427000000
...................................................................TTATGACATAATGCTTTCAG............................................................................................2064.5027000027000000000000
..........................................................................................................................................TTATAAGTAGGCTGCGAAATTATTT................2544.501800000051722010000
..................................................................................TTCAGTTGCGCTTTAAGTATTT--AT.......................................................................2444.5018000000101610000000
............................................TGCTCGAA-CGCGATACGTGTACTTATGACA........................................................................................................3034.331300000066100000000
..........................................................................................................................................TTATAAGTAGGCTGCGAAATTATTTT...............2644.001600000052601020000
...................................................................TTATGACATAATGCTTTCAGTTGCG.......................................................................................2553.8019001200012121000000
......................CGGCTCCACT------------TGCTCGAA-CGCGATA.......................................................................................................................2533.671100000061130000000
....................................................................TATGACATAATGCTTTCAGTTGCGCTT....................................................................................2753.601800050013801000000
.......................................................................................................................................TTTTTATAAGTAGGCTGCGAAATT....................2433.331000000021310030000
............................................TGCTCGAA-CGCGATACGTGTACTTATGAC.........................................................................................................2933.331000000004310011000
............................................TGCTCGAA-CGCGATACGTGTA.................................................................................................................2143.251300000003190000000
.............................................................................................................................CAGGAAA-GCTTTTTATAAGTAGGC.............................2443.251300000012019000000
.....................................................CGCGATACGTGTACTTATGACATAATGC..................................................................................................2853.201600100005280000000
......................................................................TGACATAATGCTTTCAGTTGCGCTTT...................................................................................2652.801400000010472000000
...................................................................TTATGACATAATGCTTTCAGTTGC........................................................................................2452.801400000006260000000
...........................................................................................................................................TATAAGTAGGCTGCGAAATTATTTTC..............2642.751100000011520011000
........................................................................................................................................TTTTATAAGTAGGCTGCGAAATTATT.................2642.751100000022151000000
..................................................................................TTCAGTTGCGCTTTAAGTATTT--ATA......................................................................2542.501000000080011000000
.........................................................................................................................................TTTATAAGTAGGCTGCGAAATTATT.................2542.501000000020521000000
........................................................................................................................ATTTCCAGGAAA-GCTTTTTATAAGTA................................2642.501000000053110000000
......................................................................TGACATAATGCTTTCAGTTGCGCTT....................................................................................2552.401200020000343000000
......................................................................TGACATAATGCTTTCAGTTGCGCT.....................................................................................2452.4012000000011100000000
.................................................................................................................................................TAGGCTGCGAAATTATTTTCAAAA..........2432.33700000010600000000
...................................................................................................................TTTTTATTTCCAGGAAA-GCTTTTTA......................................2532.33700000010510000000
............................................TGCTCGAA-CGCGATACGTGTACTTA.............................................................................................................2532.33700000000030040000
..........................TCCACT------------TGCTCGAA-CGCGATA.......................................................................................................................2132.33700000010204000000
...........................................................................................................................................TATAAGTAGGCTGCGAAATTA...................2142.25900000000000009000
......................................................................................................................................................TGCGAAATTATTTTCAAATCAGACGAAAT2952.201100010022321000000
..........................TCCACT------------TGCTCGAA-CGCGATACG.....................................................................................................................2332.00600010010004000000
..........................TCCACT------------TGCTCGAA-CGCGATACGTGT..................................................................................................................2632.00600010000113000000
.....TGGCTCATATAAAACACCGGCTCCACT------------.......................................................................................................................................2712.00200000000020000000
........................................................................................TGCGCTTTAAGTATTT--ATAGCTTGA................................................................2522.00400000010210000000
..........................................................TACGTGTACTTATGACATA......................................................................................................1952.001000000000325000000
.....................................................................................................TTT--ATAGCTTGATTTTTATTTCCAGGA.................................................2722.00400000011020000000
....................................................................................CAGTTGCGCTTTAAGTATTT--ATAGCTTGA................................................................2922.00400000010300000000
.........TCATATAAAACACCGGCTCCACT------------TGCT...................................................................................................................................2712.00200000001010000000
.......................................................................................................................................TTTTTATAAGTAGGCTGCGAAATTATT.................2732.00600000010320000000
............................................................................................................................CCAGGAAA-GCTTTTTATAAGTAGGC.............................2541.75700000002005000000
..........................................................................................................................................TTATAAGTAGGCTGCGAAATTA...................2241.75700000000100060000
..........................................................................................................................................TTATAAGTAGGCTGCGAAATTAT..................2341.75700000000100060000
..................................................................................TTCAGTTGCGCTTTAAGTATTT--ATAG.....................................................................2631.67500000010310000000
..........................TCCACT------------TGCTCGAA-CGCGATACGTGTACT...............................................................................................................2931.67500200010200000000
.......................................................................................................................................TTTTTATAAGTAGGCTGCGAAATTA...................2531.67500000013010000000
......................CGGCTCCACT------------TGCTCGAA-CGCGAT........................................................................................................................2431.67500100000021010000
.............................................................................................................................................TAAGTAGGCTGCGAAATTATTTTCA.............2531.67500000010400000000
.................................................................................................................................................TAGGCTGCGAAATTATTTTCAAA...........2331.67500000010400000000
............................................TGCTCGAA-CGCGATACGTGTACTTATGA..........................................................................................................2831.67500000001120010000
..........................................................................................................................................TTATAAGTAGGCTGCGAAATTATTTTCA.............2831.67500000022010000000
...................................................................................TCAGTTGCGCTTTAAGTATTT--ATAGC....................................................................2631.67500020000300000000
.....................CCGGCTCCACT------------TGCTCGAA-CGCGATA.......................................................................................................................2631.67500000011300000000
...........................................................................................................................................TATAAGTAGGCTGCGAAATTATTTTCA.............2731.67500000020120000000
.................................................................................................................................................TAGGCTGCGAAATTATTTTCA.............2131.67500000030200000000
..........................TCCACT------------TGCTCGAA-CGCGATACGTGTAC................................................................................................................2831.67500010000103000000
..........................................................TACGTGTACTTATGACATAATGCTTTCAGT...........................................................................................3051.60800000070100000000
...............................................................................................TAAGTATTT--ATAGCTTGATTTTTATA........................................................2621.50300000000210000000
...............................................................................................TAAGTATTT--ATAGCTTGATTTTTA..........................................................2421.50300000000030000000
.................................................................................TTTCAGTTGCGCTTTAAGTATTT--A........................................................................2441.50600000010410000000
.......................................................................................................T--ATAGCTTGATTTTTATTTCCAGGA.................................................2521.50300000000120000000
.......................................................................................................................TATTTCCAGGAAA-GC............................................1551.40700000000007000000
......................................................................................................................................................TGCGAAATTATTTTCAAATCAGACGA...2651.40700000002131000000
...............................................TCGAA-CGCGATACGTGTACTTATGAC.........................................................................................................2651.40700000001123000000
......................................................................................................................TTATTTCCAGGAAA-GCTTTTTATAAGT.................................2731.33400000020200000000
.................................................................................TTTCAGTTGCGCTTTAAGTATTT--ATAGCT...................................................................2931.33400000022000000000
..........................TCCACT------------TGCTCGAA-CGC...........................................................................................................................1731.33400000010102000000
..........................TCCACT------------TGCTCGAA-CGCGATAC......................................................................................................................2231.33400000000001030000
.....................CCGGCTCCACT------------TGCTCGAA-CGCGAT........................................................................................................................2531.33400000010300000000
..........................TCCACT------------TGCTCGAA-CGCGAC........................................................................................................................2031.33400200020000000000
.............................................................................................................................................TAAGTAGGCTGCGAAATTATT.................2141.25500000000000005000
...........................................................................................................................................TATAAGTAGGCTGCGAAATTATTTT...............2541.25500000010110011000
..........................................................................................................................................TTATAAGTAGGCTGCGAAATTATTTTC..............2741.25500000020120000000
...............................T------------TGCTCGAA-CGCGATACGTGTA.................................................................................................................2241.25500000000140000000
...............................T------------TGCTCGAA-CGCGATACGTGTAC................................................................................................................2341.25500000000023000000
...................................................................TTATGACATAATGCTTTCAGTT..........................................................................................2261.17700000000133000000
...................................................................TTATGACATAATGCTTTCAGTTG.........................................................................................2361.17700010001230000000
....................................................................................................................TTTTATTTCCAGGAAA-GCTTTTTA......................................2431.00300000010020000000
..................................................................................TTCAGTTGCGCTTTAAGTATTT--ATT......................................................................2541.00400000000310000000
.................................................................................................................................................TAGGCTGCGAAATTATTTTCAAAT..........2431.00300000000201000000
..CAATGGCTCATATAAAACACC............................................................................................................................................................2111.00100000000001000000
................................................................................................................TGATTTTTATTTCCAGGAAA-GCTT..........................................2431.00300000000111000000
....ATGGCTCATATAAAACACCGGCTC.......................................................................................................................................................2411.00100000000000010000
..........................................................................................................................................TTATAAGTAGGCTGCGAAATTATTTTCAAA...........3031.00300000020100000000
.........................................................................................................................TTTCCAGGAAA-GCTTTTTATAAG..................................2341.00400000003010000000
..............................................................................................TTAAGTATTT--ATAGCTTGATTTTTA..........................................................2521.00200000000020000000
.....................................................................................................................TTTATTTCCAGGAAA-GCTTTTTATAAGTA................................2931.00300000030000000000
....ATGGCTCATATAAAACACCGGCTCCA.....................................................................................................................................................2611.00100000000000010000
.........TCATATAAAACACCGGCTCCACT------------TGG....................................................................................................................................2611.00100000001000000000
.................................................................ACTTATGACATAATGCTTTCAGTTGCGCT.....................................................................................2951.00500010000220000000
..........................................................................................................................TTCCAGGAAA-GCTTTTTATAAGTAGG..............................2641.00400000000022000000
.....................................................................................................TTT--ATAGCTTGATTTTTATTTCCAGGAA................................................2821.00200000010010000000
.TCAATGGCTCATATAAAACACCGGC.........................................................................................................................................................2511.00100000000100000000
............................................................................................................AGCTTGATTTTTATTTCCAGGAAA-GC............................................2621.00200000000002000000
............TATAAAACACCGGCTCCACT------------TGCTCGA................................................................................................................................2711.00100000010000000000
...................................................................................................TATTT--ATAGCTTGATTTTTATTTCCAGGA.................................................2921.00200000000200000000
........................................................................................TGCGCTTTAAGTATTT--ATAGCTTGAT...............................................................2621.00200000000011000000
...............................................................................................................TTGATTTTTATTTCCAGGAAA-GCTT..........................................2521.00200000000020000000
.......................................................................................................................................TTTTTATAAGTAGGCTGCGAAATTAT..................2631.00300000000010020000
......................................................................................................................TTATTTCCAGGAAA-GCTTTTTATA....................................2431.00300000030000000000
..................................................................................TTCAGTTGCGCTTTAAGTATTT--A........................................................................2341.00400000001210000000
................................................CGAA-CGCGATACGTGTACTTATGACATA......................................................................................................2851.00500000001040000000
.......................................................................................................................TATTTCCAGGAAA-GCTTTTTATA....................................2341.00400000001003000000
....................................................................................CAGTTGCGCTTTAAGTATTT--ATAGCTT..................................................................2721.00200000020000000000
..............TAAAACACCGGCTCCACT------------TGCTCGAA-CGC...........................................................................................................................2911.00100000001000000000
......GGCTCATATAAAACACCGGCTCCACT------------.......................................................................................................................................2611.00100000000010000000
......................................................................TGACATAATGCTTTCAGTTGCGCTTTA..................................................................................2750.80400100000111000000
......................................................................................................................................................TGCGAAATTATTTTCAAATCAGACGAA..2750.80400020000010010000
..............................................................................TGCTTTCAGTTGCGCT.....................................................................................1650.80400000000004000000
..........................................................TACGTGTACTTATGACATAATGCTTTC..............................................................................................2750.80400000020011000000
...................................................................................TCAGTTGCGCTTTAAGTA..............................................................................1850.80400000000301000000
.........................................................................................................................................TTTATAAGTAGGCTGCGAAATTA...................2340.75300000020000010000
........................................................................................................................................TTTTATAAGTAGGCTGCGAAATTA...................2440.75300000010010010000
............................................TGCTCGAA-CGCGATACGTG...................................................................................................................1940.75300000000012000000
.........................................................................................................................TTTCCAGGAAA-GCTTTTTATAAGTAA...............................2640.75300000003000000000
.............................ACT------------TGCTCGAA-CGCGATACGTGTA.................................................................................................................2440.75300000000012000000
............................................................................................................................................ATAAGTAGGCTGCGAAATTAT..................2140.75300000000000003000
..........................................................................................................................TTCCAGGAAA-GCTTTTTAT.....................................1940.75300000020100000000
.........................................................................................................................TTTCCAGGAAA-GCTTTTTAT.....................................2040.75300000002010000000
.............................................................................................................................CAGGAAA-GCTTTTTATAAG..................................1940.75300000000003000000
.............................ACT------------TGCTCGAA-CGCGATACGTG...................................................................................................................2240.75300000000003000000
...........................................................................................................................................TATAAGTAGGCTGCGAAATTATT.................2340.75300000021000000000
............................................................................................................................................ATAAGTAGGCTGCGAAATTA...................2040.75300000000000003000
...........................................................................................................................TCCAGGAAA-GCTTTTTATAAGTAGG..............................2540.75300000010002000000
.................................................................................TTTCAGTTGCGCTTTAAGTATTT--ATA......................................................................2640.75300000010101000000
......................CGGCTCCACT------------TGCTCGAA-CGCGATACG.....................................................................................................................2730.67200000000110000000
.................................................................................................................................................TAGGCTGCGAAATTATTTTCAAATT.........2530.67200000010100000000
................................................................................................................TGATTTTTATTTCCAGGAAA-GCTTTT........................................2630.67200000000011000000
....................................................................................................................TTTTATTTCCAGGAAA-GCTTTTTATA....................................2630.67200000000200000000
.............................................................................................TTTAAGTATTT--ATAGCTTG.................................................................1930.67200000000002000000
.............................................................................................................................................TAAGTAGGCTGCGAAATTATTTTCAAA...........2730.67200000010100000000
......................CGGCTCCACT------------TGCTCGAA-CGCGA.........................................................................................................................2330.67200000000110000000
................................................................................................................TGATTTTTATTTCCAGGAAA-GCT...........................................2330.67200000000011000000
...........................................................................................................................................TATAAGTAGGCTGCGAAATTATTTTCAAAA..........3030.67200000020000000000
..............................................................................................TTAAGTATTT--ATAGCTTG.................................................................1830.67200000000002000000
..........................TCCACT------------TGCTCGAA-CGCGAATT......................................................................................................................2230.67200000000200000000
...................................................................................................................................................GGCTGCGAAATTATTTTCAAATCAGA......2630.67200000000110000000
.............................................................................................................................................TAAGTAGGCTGCGAAATTATTTTCAA............2630.67200000000010010000
.....................................................CGCGATACGTGTACTTATGACATAAT....................................................................................................2650.60300000011100000000
.................................................GAA-CGCGATACGTGTACTTATGAC.........................................................................................................2450.60300000000003000000
................................................CGAA-CGCGATACGTGTACTTATGACA........................................................................................................2650.60300000001001010000
...................................................................TTATGACATAATGCTTTCAGTTGCGCG.....................................................................................2750.60300000001200000000
....................................................................TATGACATAATGCTTTCAGTTGCG.......................................................................................2450.60300010020000000000
...................................................................TTATGACATAATGCTTTCAGTTGCGCTA....................................................................................2850.60300000001110000000
..............................................................................TGCTTTCAGTTGCGCTTTAAGTATT............................................................................2550.60300100000101000000
...............................................................................................TAAGTATTT--ATAGCTTGATTTTTAAAA.......................................................2720.50100000000010000000
.......................................................................................................T--ATAGCTTGATTTTTATTTCCAGGAAA-..............................................2720.50100000000010000000
..........................................................................................................................................TTATAAGTAGGCTGCGAAATTATAAA...............2640.50200000000000020000
........................................................................................................................................TTTTATAAGTAGGCTGCGAAATTAT..................2540.50200000010000010000
.........................................................................................................................TTTCCAGGAAA-GCTTTTTATAAGT.................................2440.50200000011000000000
...................................................................................TCAGTTGCGCTTTAAGTATTT--AT.......................................................................2340.50200000000020000000
............................CACT------------TGCTCGAA-CGCGATACGTGTACT...............................................................................................................2740.50200020000000000000
......................................................................................................TT--ATAGCTTGATTTTTATTTCCAGGA.................................................2620.50100000000010000000
.........................................................................................................................................TTTATAAGTAGGCTGCGAAATTAT..................2440.50200000000000011000
...............................T------------TGCTCGAA-CGCGATACGTG...................................................................................................................2040.50200000001001000000
..........................................................................................................................................TTATAAGTAGGCTGCGAAATTATTA................2540.50200000000000020000
............................CACT------------TGCTCGAA-CGCGA.........................................................................................................................1740.50200000020000000000
.............................ACT------------TGCTCGAA-CGCGATACGTGT..................................................................................................................2340.50200000000011000000
...........................................................................................................TAGCTTGATTTTTATTTCCAGGAAA-GC............................................2720.50100000000001000000
...............................T------------TGCTCGAA-CGCGATACGTGT..................................................................................................................2140.50200000000200000000
.............................................................................................................................................TAAGTAGGCTGCGAAATTATTTT...............2340.50200000000100010000
...............................................................................................TAAGTATTT--ATAGCTTGATTTTTATT........................................................2620.50100000001000000000
........................................................................................................................ATTTCCAGGAAA-GCTTTTTATAAGTAGGC.............................2940.50200000020000000000
.......................................................................................................................TATTTCCAGGAAA-GCTT..........................................1740.50200000000002000000
............................................TGCTCGAA-CGCGATACGTGTAC................................................................................................................2240.50200000000002000000
.............................................................................................................................CAGGAAA-GCTTTTTATAAGTAGGCT............................2540.50200000000020000000
...............................................................................................................TTGATTTTTATTTCCAGGAAA-GCTTTT........................................2720.50100000000100000000
.............................ACT------------TGCTCGAA-CGCGATACGTGTACT...............................................................................................................2640.50200000000100010000
..............................................................................................TTAAGTATTT--ATAGCTTGATTTTTATTT.......................................................2820.50100000000010000000
...............................................................................................................TTGATTTTTATTTCCAGGAAA-GCTTTTT.......................................2820.50100000000010000000
..........................................................................................................................TTCCAGGAAA-GCTTTTTATAAGTAG...............................2540.50200000000110000000
.......................................................................................................................................TTTTTATAAGTAGGCTGCGAAA......................2240.50200000000000002000
...............................................TCGAA-CGCGATACGTGTACTTATGACAT.......................................................................................................2850.40200000010100000000
................................................................TACTTATGACATAATGCTTTCAGTTGCGC......................................................................................2950.40200010000100000000
............................................................CGTGTACTTATGACATAATGCTTT...............................................................................................2450.40200000000200000000
...........................................................ACGTGTACTTATGACATAATGCTTT...............................................................................................2550.40200000000101000000
.......................................................................................................................................TTTTTATAAGTAGGCTGCGAA.......................2150.40200000000010001000
.............................................................................ATGCTTTCAGTTGCGCTT....................................................................................1850.40200000000002000000
.......................................................................................................................TATTTCCAGGAAA-GCT...........................................1650.40200000000002000000
.............................................................................ATGCTTTCAGTTGCGC......................................................................................1650.40200000000002000000
...................................................A-CGCGATACGTGTACTTATGACATA......................................................................................................2550.40200000001100000000
...................................................................TTATGACATAATGCTTTCAGTTGCGT......................................................................................2650.40200000000020000000
.....................................................CGCGATACGTGTACTTATGACATAATGCT.................................................................................................2950.40200000000020000000
droSec2
GTCAATGGCTCATATAAAAGACCGGCTCCACT------------TGCTCGAA-CGCGATACGTGTACTTATGACATAATGATTTCAGTTGCGCTTTAAGTATTT--ATAGCTTGATTTTTATTTCCAGGAAA-GCTTTTTATAAGTAGGCTGCGAAATTATTTTCAAATCAGACGAAATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................TTTCAGTTGCGCTTTAAGTATTT--A........................................................................24200.70149050
.........................................................................................................................TTTCCAGGAAA-GCTTTTTATAAGTAGGC.............................28200.501010000
...............AAAAGACCGGCTCCACT------------TGCTCGAA-..............................................................................................................................25200.1533000
...............AAAAGACCGGCTCCACT------------TGCTCGAA-C.............................................................................................................................26200.1530030
................................................................................................................TGATTTTTATTTCCAGGAAA-GCTTT.........................................25200.1022000
.................................................................................TTTCAGTTGCGCTTTAAGTATT............................................................................22200.1022000
........................................................................................................................................TTTTATAAGTAGGCTGCGAAATTATT.................26200.0510010
...............AAAAGACCGGCTCCACT------------TG.....................................................................................................................................19200.0510010
..................................................................................TTCAGTTGCGCTTTAAGTATTT--AT.......................................................................24200.0511000
...............................................TCGAA-CGCGATACGTGTACTTATGACA........................................................................................................27200.0511000
.........................................................................................................................................TTTATAAGTAGGCTGCGAAATTATT.................25200.0510100
...............AAAAGACCGGCTCCACT------------TGCT...................................................................................................................................21200.0510010
..........................................................................ATAATGATTTCAGTTGCGCTTT...................................................................................22200.0510001
.........................................................................................................................TTTCCAGGAAA-GCTTTTTATAAGTAGG..............................27200.0511000
.........................................................................................................................TTTCCAGGAAA-GCTTTTTATAAGTA................................25200.0511000
.................................................................................TTTCAGTTGCGCTTTAAGTATTT--.........................................................................23200.0510001
..........................TCCACT------------TGCTCGAA-CGCGATACGTGT..................................................................................................................26200.0511000
...........................CCACT------------TGCTCGAA-CGCGATACGTGTAC................................................................................................................27200.0511000
.........................CTCCACT------------TGCTCGAA-CGCGATACGTG...................................................................................................................26200.0510010
...........................................................................................................................TCCAGGAAA-GCTTTTTATAAG..................................21200.0510001
.................................................................................TTTCAGTTGCGCTTTAAGTATTT--ATAG.....................................................................27200.0510001
dm3
GTCCATGGACCAGATTAAAGTGCGGCTCCAACTGCACCAGATCGTGCTCGAATCGTGATGTGGGAACCCAAGCCATGATGATTTCAGTTG--CTTATAGTATTCTCACAGCCTTATTTTCATTTCCCGGAAATGCTTTTCTCAAGTAGACTGCGCAAATATTTTCGAAGATT-AGAAATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................TCGTGCTCGAATCGTGATGTG.....................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TCGAATCGTGATGTGGGAACC...............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
................AAAGTGCGGCTCCAACTGA................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
........................................ATCGTGCTCGAATCGTGATGTGGGA..................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.....................................................CGTGATGTGGGAACCCAAG...........................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AAGTGCGGCTCCAACTGCGTA.............................................................................................................................................2150.6030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000200000000000000000000000000000000000000000000000
.................AAGTGCGGCTCCAACTGTG...............................................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.................AAGTGCGGCTCCAACTGTT...............................................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
................AAAGTGCGGCTCCAACTGTGT..............................................................................................................................................21100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
............................................................................................................................................................AATATTTTCGAAGATT-ACGG..20120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AA------------------------------------------------------------------------------------------------------------------------------------CATATTGTAAGCGGGCTAACAAAATCTTTTCAAAATATACAATATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
GCCCATGAACCAGATTAAAGTCCGGCTCCAATTGCACCAGATCGTGCTCGAAGCGCGTCTTGGGCACCCAAGCCATGATGCTTTCAGTTG--TTTCAAGTATTC--ACAGCTTGATTTTCATATCTAGGAAA-GCCCTTTTCAAGTAGACTGTGCAAATATTTTCGAA-----------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droBia1
AT------------------------------------------------------------------------------------------------------------------TTTTATTTCCCGGGAA-AATACTTCCTAGGGTAGTGAGAAATTTATTTAAAGTCAGA--AAAASizeHit CountTotal NormTotal
No Reads
droTak1
AG------------------------------------------------------------------------------------------------GTGTTT--TTA-TTTGATTTATACTTCTCGGAAA-TTTTTAAAGATGTGGGCGCAGGAAACATTTTTAAA-----------SizeHit CountTotal NormTotal
No Reads
droRho1
TA----------------------------------------------------------------------ATATCAAGCCATTAGCAGCTCTTTAAGTAGTT--ACAATTTGATTT--ATTTCCA----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CC----------------------------------------------------------------------------------------------------------------------------GGGAAT-ACACTTTACAGATTAGCTGGAAAATTATTTCCAAA-----------SizeHit CountTotal NormTotal
No Reads
droWil2
TA-----------------------------------------------------------------------------------------------AATATTT--ATACCTTAGATTCTAGCTAAGAGAAA-ACTTCTTATTAGT---------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droMoj3
TT---------------------------------------------------------------------------------------------------------------------TAACTCATAGATA-GCTTTATATAAGTAAGCTATAAAATT--------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads

Generated: 05/19/2015 at 05:59 AM