dsi_5618

exon [2l_1949917_1950141_+]; five_prime_UTR [2l_1949917_1949978_+]; intron [2l_1948001_1949916_+]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GTTCAACAGCATTGTTCATTTTTGGTATTGATAAACCATTTACGTATGTAGACCGTGTTCCGGACTTATCTTATCAGCTCCCGAACACGCAATTTCCCCCATTCGATACTTTCCACCACCAAAAGTCAACAGCAGCGTGCTCAATACTGGCTTTCTCTTTCAGAACGACAGCTCCCCGAGGTGGTGAAGGTCACTCAGAGGGAGGAATACAAGGCGGAGGAGGAGGCGGAGCACCAGGAGCACTCACACA ************************************************...(((((((.(((((.........)).))).)))))))..................((((((.((((((...(((....((((...))))....)))((((.(((((...)))..)).))))......)))))))))))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M053 female body	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	M024 male body	SRR902009 testis	SRR553487 NRT_0-2 hours eggs
GTTCAACAGCATTGTTCATTTTTGGT................................................................................................................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0
.........................................................TTCCGGACTTATCTTATCAGC............................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0
..............................................................................................................................................................................CCCGAGGTGGTGAAA.............................................................	15	1	9	0.78	7	0	0	5	2	0	0	0	0
................................................................................................................................................................................................................ACAAGGCTGAGGACGAGGCAGA....................	22	3	3	0.33	1	0	0	1	0	0	0	0	0
.................ATTTCTGGTATTGGTAAGC......................................................................................................................................................................................................................	19	3	20	0.30	6	1	0	0	0	0	5	0	0
..............................................................................TCCCGAACAAGCAAT.............................................................................................................................................................	15	1	8	0.25	2	0	0	0	2	0	0	0	0
...................................................................................................................................................................................................CAGAGGGCGGAATAAAAGG....................................	19	2	5	0.20	1	0	0	0	0	0	0	1	0
................................................................................................................................................................................CCAGGCGGTGAAGGTCAATCA.....................................................	21	3	5	0.20	1	0	0	0	0	1	0	0	0
............................................................................................................................................................................................GGTCAGTCAGAGGGA...............................................	15	1	7	0.14	1	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................TGGTGAAGGGCACTCAGT...................................................	18	2	8	0.13	1	0	0	0	0	1	0	0	0
.....................................................................................................TTCGATCCCTTCCTCCACCA.................................................................................................................................	20	3	9	0.11	1	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................CATGTCGGAGGAGGAGGC.......................	18	2	20	0.05	1	0	0	0	0	0	1	0	0
....................................................................................................................................................................................GTGGTGAAGGGCAATCAGC...................................................	19	3	20	0.05	1	0	0	0	0	1	0	0	0
.TTCAACCGCATTGTT..........................................................................................................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	0	1
..................................................................................................................................................................................AGGCGGTGAAGGGCAATCA.....................................................	19	3	20	0.05	1	0	0	0	0	1	0	0	0

CAAGTTGTCGTAACAAGTAAAAACCATAACTATTTGGTAAATGCATACATCTGGCACAAGGCCTGAATAGAATAGTCGAGGGCTTGTGCGTTAAAGGGGGTAAGCTATGAAAGGTGGTGGTTTTCAGTTGTCGTCGCACGAGTTATGACCGAAAGAGAAAGTCTTGCTGTCGAGGGGCTCCACCACTTCCAGTGAGTCTCCCTCCTTATGTTCCGCCTCCTCCTCCGCCTCGTGGTCCTCGTGAGTGTGT ************************************************...(((((((.(((((.........)).))).)))))))..................((((((.((((((...(((....((((...))))....)))((((.(((((...)))..)).))))......)))))))))))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
...................................................................................................................GGTGATGTTCAGTTGTCGTCGT.................................................................................................................	22	3	1	2.00	2	2	0	0
..................................................CTGTCACAAGGCCTGCA.......................................................................................................................................................................................	17	2	2	0.50	1	0	1	0
.......................................................................................................................................................AAAGAGAAAGTCTTCATGT................................................................................	19	2	5	0.20	1	1	0	0
.....................................................................................................................................................................TCTGTCGAGGGGCTC......................................................................	15	1	5	0.20	1	1	0	0
......................................................................CATAGTGGAGGGCTTGT...................................................................................................................................................................	17	2	7	0.14	1	1	0	0
....................................................................................................................GTGATGTTCAGTTGTCGTCGT.................................................................................................................	21	3	9	0.11	1	1	0	0
...............................................................................................................................................................AGTCTTGCTGGTGAGGG..........................................................................	17	2	11	0.09	1	0	0	1
..................................................................................CTTGTGCGTTGAAGG.........................................................................................................................................................	15	1	12	0.08	1	0	0	1
........................................................................................................CTCTGAGAAGTGGTGGTTT...............................................................................................................................	19	3	20	0.05	1	0	0	1
............................................................................................................................................................................AGGGGCGCCCCCACTTGC............................................................	18	3	20	0.05	1	1	0	0
.....................................................................................................................................................................ACCGTCGAGGGGCTCC.....................................................................	16	2	20	0.05	1	0	1	0

Species	Coordinate	ID	Alignment
droSim2	2l:1949717-1949966 +	dsi_5618	GTTC----AAC--AGCATTGTTC--AT-TTT-TG-GTATTGATAAA-------CCATTTACGTATGTA--------------------GACCGTGT-TCCGGACTTATCTTATCAGCTCCCGAACACGCAATTTCC-CCCATTCGATACTTTCCACCA--------CCAA-AAGTC-AACAGCAGCG--------------TGCTCAATACTGGCTTTCTCTTTCAGAACGA---------CAGCTCCCCGAGGTGGTGAAGGTCACTCAG-AGGGA-----------------------------------GGAATACAAGGCGGAGGAG---GAGGC--GGAGCACCAGG---AGCA-----CTCA--CACA
droSec2	scaffold_14:1986411-1986661 +		GTTC----AAC--AGCATTGTAC--AT-TTT-TGGGTATTGATAAA-------CCATTTACGTATGTA--------------------GACCTTGT-TCAGGACTTATCTTATCAGCTCCCGAACACGCAATTTCC-CCCATTCGATACTTTCCACCA--------CCAA-AAGTC-AACAGCAGCG--------------TGCTCAATACTGGCTTTCTCTTTCAGAACGA---------CAGCTCCCCGAGGTGGTGAAGGTCACTCAG-AGGGA-----------------------------------GGAATACAAGGCGGAGGAG---GAGGC--GGAGCACCAGG---AGCA-----CTCA--CACA
dm3	chr2L:2039761-2039979 +		GTTC----AAC--AGCATTGTAC--AT-TTT-TGGGTATTGATAAA-------CCATTTACGTATGTA--------------------GACCGTGT-TCCGGACTTATCTTATCAG-TCCAGAACACGCAATTTCCCCCCATTCGATACTTTCCACCA--------CCAA-TATTC-AATAGCAGCG--------------TGCTCAATACTGGCTTTCTCTT-----------------------------------------CACTCAA-AGGGA-----------------------------------GGAATATAAGGCGGAGGAG---GAGGC--GGAGCACCAGG---AGCA-----CTCA--CACA
droEre2	scaffold_4929:2087345-2087592 +		GTTC----AAC--AGCGTTGTAT--AT-TTT-TGGGTATTGATAAA-------CCATTTACGTATGTA--------------------GACTGTGT-TCCGGTCTTATCTTATCAGCTCCAAAACACGCAATTTC---CCATTCGATGCTTTCAACCA--------CCAA-TAGTC-GACACCACCA--------------TACTCAATACTCGCTTTCTCTTTCAGAACGA---------CAGCTCC-CGAGGTGGTGAAGGTCACCCAG-AGGGA-----------------------------------GGAATAGAACGTGGAGGAG---GAGGC--GGAGCAGCAGG---ACCA-----CTCA--CACA
droYak3	2L:2025288-2025536 +		GTTC----AAC--AGCGTTGTAC--AT-TTT-CGGGTATTGATAAA-------CCATTTACGTATGTA--------------------GACCGTGT-TCCGGACTTATCTTATCAGCTCCAGAACACGCAATTTC---CCATTCGATACTTTCCACCA--------CCAA-TAGTC-GACACCACCA--------------TACTCAATACTCGCTTTCTCTTTCAGAACGA---------CAGCTCCCCGCGGTGGTGAAGGTCACCCAG-AGGGA-----------------------------------GGAATACAACGCGGAGGAG---GAGGC--GGAGCACCAGG---AGCA-----CTCA--CACA
droEug1	scf7180000407253:253260-253490 +		TTTT----AAC--AATGTTGTTTTTATTTTT-TGGTTATTGGTAAA-------TCATTTATGTATGTT--------------------GACTGTGT-TTGAGACTTATCTTATCACCTGCAGAACACGCAATTTC---CCATTCGATACTTTGCAC-----------------------------CG--------------TGCTCAATACTCGCTTTCTCTTTTAGAACCG---------CAACTCCCCGAGAAGGGGAAGGTCACTCAATAGGGA-----------------------------------CGATAACAACGCGAAGGAG---GAG-----GAGTACCAAA---AGCA-----GACA--CACT
droBia1	scf7180000302408:256563-256807 +		TTTC----GAC--CGTGTTGTAC--ATATTT-TGGTTATTGATAAA-------CCATTTACGTATGTA--------------------GACCGTGT-TCCGGACTTATCTTATCAGCTCCCGAACACGCAATTTC---CCATTCGATACTTTCCACCA--------CCAA-TACTC-AA----------------------CACTCAATACCCGCTTTCTCTTTCAGAACGA---------CAGCTCCCCGAGGTGGTGAAGGTCACTCAG-AGGGA-----------------------------------GGAACACAACGCTGAGGAGGCGGAGGA--GGAGCACCAGG---AGCA-----CACA--CACA
droTak1	scf7180000415779:525367-525602 +		TTTC----GAC--T--TTTGTAC--TTTTTTTCGGTTATTGATAAA-------CCATTTACGTATGTA--------------------GACCGTGT-TCCGGACTTATCTTATCAGCAGCCGAACACGCAATTTC---CCATTCGATACTTTCCACCA--------CCAAATACTCCATTACCA--A--------------TACTCAATGCCCGCTTTCTCTTTCAGAACGA---------CAGCTCCCCGAGGTGCTGAAGGTCACTCAG-AGGGA-----------------------------------GGAATACAAAGCGG-GGAGGCGGAGGA--GGTG-------------------------CACA
droEle1	scf7180000491273:1255163-1255388 -		TTTC----GAC--TGTATTGGTT--AG-TTT-TGGTTATTGATAAA-------CCATTTACGTATGTA--------------------GACTGTGT-TCCGGACTTATCTTATCAGCTCCCGAACACGCAATTTC---CCATTCGATACTTTCCACCA--------CCA------------------------------------TAATGCTTGCTTTCTCTTTCAGAACGA---------AACTTCCCCGTGGCGGTGAAGGTCACTCAG-AGGAA-----------------------------------GGAAAACAACGCGGAGGAG---AAGGCGAGGAGCAGCAGC---AGCA------------GCA
droRho1	scf7180000777965:50971-51195 -		TTTC----GAC--TGTATTGGTT--AA-TTT-TGGTTATTGATAAA-------CCATTTACGTATGTA--------------------CACTGTGT-TCCGGGCTTATCTTATCAGCTCCCGAACACGCAATTTC---CTATTCGATACTTTCCACCA--------CCAG---------------CA--------------TTCTCAATACTCGCTTTCTCTTTCAGAACGA---------AAGTTTACCGAAGTGGTGAAGGTCACTCAG-AGGAA-----------------------------------GGAACACAACGCGGAGGAG---AAGGA--GGAGCAGCAG---------------------CA
droFic1	scf7180000453949:80000-80238 -		TGTC----GAC--TGAATAGAGT--AT-TTT-TGGTTATTGATAAA-------CCATTTACGTGTGTA--------------------GACTGTGT-TGTGGACTTATCTTATCAATTCCCGAACACGCAATTTC---CCGTTCGATACTTTCCACCA--------TCAA------------CGCCG--------------TACTCAATACTCGCTTTCTCTTTCAGAACAA---------CAGCTCCCTCAGTTGGTGAAGGTCACTCAG-AGGGA-----------------------------------GGAATACTACGCGGAGAAG---GAGGA--GGAGCAGTCGG---AGCA-----CTCA--CACA
droKik1	scf7180000302408:273493-273724 +		AA-------------AATTGGT---AT-TAT-T-AATATGGAAAGT-------ACTTTTACGTGTGGAGGAGAGTCATTATTTG----GGCAGGGT-TCCTGACTTATCTTATCAGCTCCCAAACACGCAATTTC---CCATTCGACAGT-TCCTCTG--------CCAA-TA---------CACCC--------------TGCTTAATATTCGCTTTCTCTTTTAGAGCGA---------CAGCTCCCCGAGGCGCTGAAGGTCACTCAA-CAAAA-------------------------GGC---------AGT---AGCAGGAGGAG---GAGAC--GGAC---------------------CA--CACA
droAna3	scaffold_12916:6425618-6425888 -		AA-----------------GAGT--AC-TTT-CCGCTATTGAAAAAAAAACACACATTTACGTGTGTA--------------------GACCTTGTTTCCGGACTTATCTTATCAGCTCCCGAATACGCAATTCA---CCATTCGATACCCGCCGATG--------CCAA-T-----------AACT--------------TATTCCACA-TTGCTTTCTCTTTCAGGCCGA---------TAGCTTCCCGGAGTGGTGAGGGTCACTCAG-GAACAGAAACAGAAA-GGAGAAGACCAAAAAGCAGGA-----GACACTAACCGCAGGAG---GAGGA--GGAGGGCCAGC---AACAGCTCGCCCACCCACA
droBip1	scf7180000396568:391586-391853 +		T-----------------------------C-TGGCTATTGAAAAA-----ACACATCTACGTGTGTA--------------------GACCTTGTTTCCGGGCTTATCTTATCAGCTCCCGAATACGCAATATTT-CCCATTCGATACTCGCCAATG--------CCAA-T-----------AACT--------------TATTCCACA-TTGCTTTCTCTTTCAGGCCGACTCTCTTCATAGCTTCCCGGAGTGGTGAGGGTCACTCAG-GAACAAAAAAAGGAACGGAGAAGAACAAAAAGCAGGA---GG-ACACAAGCCGGAGGTG---GAGGA--GGAGGGCCAACAAAAGCT---CTCCCA--CACA
dp5	4_group3:8833286-8833513 +		AAGAATAGAAGAAC--CTTGAAC--TCCCATTCGG---------------------------------TCGGAGCCTTCACCTGCCTAG--------TCACCACCAATCTTATCAGTTTTTA------------T---CAATTGGGGGCTTTTTACGAAATTGGTAC--GA------------AGTTCGTTTAACATTTCACATTTTCTGTGTGTTTCTTTTTG-----------------CAGCACCC-GAA--GGAGCAG--CGTCCAA-GGAGT---------------------------CAGGAGCTAG-TCGCTAGC-----CG----GGAGG--AGACGACCAAA---CACA-----CACA--CACA
droPer2	scaffold_8:15547-15774 +		AAGAATAGAAGAAC--CTTGAAC--TCCCATTCGG---------------------------------TCGGAGCCTTCACCTGCATAG--------TCACCACCAATCTTATCAGTTGTTA------------T---CAATTGGGGGCTTTTTACGAAATTGGTGC--GA------------AGTTCGTTCAACATTTCACATTTTCTGTGTGTTTCTTTTTG-----------------CAGCACCC-GAA--GGAGCAG--CGTCCAA-GGAGT---------------------------CAGGAGCTAG-TCGCTAGC-----CG----GGAGG--AGACGACCAAA---CACA-----CACA--CACA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GTTC----AAC--AGCATTGTTC--AT-TTT-TG-GTATTGATAAA-------CCATTTACGTATGTA--------------------GACCGTGT-TCCGGACTTATCTTATCAGCTCCCGAACACGCAATTTCC-CCCATTCGATACTTTCCACCA--------CCAA-AAGTC-AACAGCAGCG--------------TGCTCAATACTGGCTTTCTCTTTCAGAACGA---------CAGCTCCCCGAGGTGGTGAAGGTCACTCAG-AGGGA-----------------------------------GGAATACAAGGCGGAGGAG---GAGGC--GGAGCACCAGG---AGCA-----CTCA--CACA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
GTTC----AAC--AGCATTGTTC--AT-TTT-TG-GT.................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................T-TCCGGACTTATCTTATCAGC.................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................CCCGAGGTGGTGAAA................................................................................................................	15	9	0.78	7	0	0	0	0	0	0	0	2	0	5	0	0	0	0	0	0	0

droSec2

GTTC----AAC--AGCATTGTAC--AT-TTT-TGGGTATTGATAAA-------CCATTTACGTATGTA--------------------GACCTTGT-TCAGGACTTATCTTATCAGCTCCCGAACACGCAATTTCC-CCCATTCGATACTTTCCACCA--------CCAA-AAGTC-AACAGCAGCG--------------TGCTCAATACTGGCTTTCTCTTTCAGAACGA---------CAGCTCCCCGAGGTGGTGAAGGTCACTCAG-AGGGA-----------------------------------GGAATACAAGGCGGAGGAG---GAGGC--GGAGCACCAGG---AGCA-----CTCA--CACA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................................................................................................................AG-AGGGA-----------------------------------GGAATACAAGGCGGA...............................................	22	1	2.00	2	1	0	1	0
.........................................................................................................................................................................................................................................................................................................................GAATACAAGGCGGAGGAG---GAGGC--.................................	23	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................AATACAAGGCGGAGGAG---GAGGC--.................................	22	1	1.00	1	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................ATACAAGGCGGAGGAG---GAGGC--.................................	21	1	1.00	1	0	1	0	0

dm3

GTTC----AAC--AGCATTGTAC--AT-TTT-TGGGTATTGATAAA-------CCATTTACGTATGTA--------------------GACCGTGT-TCCGGACTTATCTTATCAG-TCCAGAACACGCAATTTCCCCCCATTCGATACTTTCCACCA--------CCAA-TATTC-AATAGCAGCG--------------TGCTCAATACTGGCTTTCTCTT-----------------------------------------CACTCAA-AGGGA-----------------------------------GGAATATAAGGCGGAGGAG---GAGGC--GGAGCACCAGG---AGCA-----CTCA--CACA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................................................................................................................................................................................................................................................................ATAAGGCGGAGGAG---GAGG....................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0
.................TTGTAC--AT-TTT-TGGGTATTGATAAA-------C................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ATAAGGCGGAGGAG---GAGGC--GGAG.............................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AAGGCGGAGGAG---GAGGC--GGA..............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................AA-AGGGA-----------------------------------GGAATATAAGGCGG................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................CTCAA-AGGGA-----------------------------------GGAATATAAGG...................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AGCACCAGG---AGCA-----CTCA--CACA	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................GA-----------------------------------GGAATATAAGGCGGAGGAG---GA......................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TATTC-AATAGCAGCG--------------TGCTCAATACTGGC...............................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AG---GAGGC--GGAGCACCAGG---AG.................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TAAGGCGGAGGAG---GAGGC--.................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................GGAGGAG---GAGGC--GGAGCACCAGG---A..................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................GA-----------------------------------GGAATATAAGGCGGAGGAG---GAGG....................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................C--GGAGCACCAGG---AGCA-----CTCA--CA..	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................AATAGCAGCG--------------TGCTCAATACTG.................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TAAGGCGGAGGAG---GAGGC--GGAGC............................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GGC--GGAGCACCAGG---AGCA-----CTC.......	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................GAATATAAGGCGGAGGAG---GAG.....................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TATAAGGCGGAGGAG---GAG.....................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................TTACGTATGTA--------------------GACCGTG.......................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................GGAATATAAGGCGGAGGAG---GAGG....................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................GA-----------------------------------GGAATATAAGGCGGAGGAG---GAG.....................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................GA-----------------------------------GGAATATAAGGCGGAGGAG---G.......................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................A-AGGGA-----------------------------------GGAATATAAGGCGGAGGAG---G.......................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................CAG-TCCAGAACACGCAATTTCCCCCC..........................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AG---GAGGC--GGAGCACCAGG---C..................	19	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................CTCAA-AGGGA-----------------------------------GGAATATAAGGCGGA...............................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TATAAGGCGGAGGAG---GAGGC--G................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................GAG---GAGGC--GGAGCACCAG.......................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ATAAGGCGGAGGAG---GAGGC--GGAGCACCA........................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................AATATAAGGCGGAGGAG---GAG.....................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................CTCAA-AGGGA-----------------------------------GGAATATAAG....................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AAGGCGGAGGAG---GAGGC--GGAGCACC.........................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AGGCGGAGGAG---GAGGC--GG...............................	18	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AAGGCGGAGGAG---GAGGC--G................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GTTC----AAC--AGCGTTGTAT--AT-TTT-TGGGTATTGATAAA-------CCATTTACGTATGTA--------------------GACTGTGT-TCCGGTCTTATCTTATCAGCTCCAAAACACGCAATTTC---CCATTCGATGCTTTCAACCA--------CCAA-TAGTC-GACACCACCA--------------TACTCAATACTCGCTTTCTCTTTCAGAACGA---------CAGCTCC-CGAGGTGGTGAAGGTCACCCAG-AGGGA-----------------------------------GGAATAGAACGTGGAGGAG---GAGGC--GGAGCAGCAGG---ACCA-----CTCA--CACA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................................................................................................................................................................................................................................................................................................................AATAGAACGTGGAGGAG---GAGGC--.................................	22	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GAGGC--GGAGCAGCAGG---ACCA-----..........	20	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................GAACGA---------CAGCTCC-CGAGGT.......................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................GAAGGTCACCCAG-AGGGA-----------------------------------GGA...........................................................	21	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................CGA---------CAGCTCC-CGAGGTGGT....................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................GCTCC-CGAGGTGGTGAAGGT..............................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................GAAGGTCACCCAG-AGGGA-----------------------------------GGAAT.........................................................	23	1	1.00	1	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................ACGTGGAGGAG---GAGGC--GGAGC............................	21	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................GA---------CAGCTCC-CGAGGTGGTGAAGGT..............................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................AGAACGA---------CAGCTCC-CGAGGT.......................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................GAAGGTCACCCAG-AGGGA-----------------------------------G.............................................................	19	1	1.00	1	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................ATAGAACGTGGAGGAG---GAGGC--.................................	21	1	1.00	1	0	0	0	0	1	0	0

droYak3

GTTC----AAC--AGCGTTGTAC--AT-TTT-CGGGTATTGATAAA-------CCATTTACGTATGTA--------------------GACCGTGT-TCCGGACTTATCTTATCAGCTCCAGAACACGCAATTTC---CCATTCGATACTTTCCACCA--------CCAA-TAGTC-GACACCACCA--------------TACTCAATACTCGCTTTCTCTTTCAGAACGA---------CAGCTCCCCGCGGTGGTGAAGGTCACCCAG-AGGGA-----------------------------------GGAATACAACGCGGAGGAG---GAGGC--GGAGCACCAGG---AGCA-----CTCA--CACA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................................................................................................................................................................................GGA-----------------------------------GGAATACAACGCGGAGGAG---GAGGC--G................................	28	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4
...................................................................................................................................................................................................................................................................................GA-----------------------------------GGAATACAACGCGGAGGAG---GA......................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................CACCCAG-AGGGA-----------------------------------GGAATACAACGCGGAG..............................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GGC--GGAGCACCAGG---AGCA-----CTCA--CA..	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................ACGCGGAGGAG---GAGGC--GG...............................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................CGCGGAGGAG---GAGGC--GGAGCACCAGG---AGC................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AG---GAGGC--GGAGCACCAGG---AGCA-----CT........	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TACAACGCGGAGGAG---GAGGC--.................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................GTGAAGGTCACCCAG-AGGGA-----------------------------------..............................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................GGAATACAACGCGGAGGAG---GA......................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................G---GAGGC--GGAGCACCAGG---AGC................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................ATACAACGCGGAGGAG---GAGGC--.................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................ATACAACGCGGAGGAG---GAGGC--GGAGC............................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................ATACAACGCGGAGGAG---GAGGC--GG...............................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................AGGC--GGAGCACCAGG---AGC................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................GTGAAGGTCACCCAG-AGGGA-----------------------------------GGA...........................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................GGTCACCCAG-AGGGA-----------------------------------GGAAT.........................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ACAACGCGGAGGAG---GAGGC--.................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

TTTT----AAC--AATGTTGTTTTTATTTTT-TGGTTATTGGTAAA-------TCATTTATGTATGTT--------------------GACTGTGT-TTGAGACTTATCTTATCACCTGCAGAACACGCAATTTC---CCATTCGATACTTTGCAC-----------------------------CG--------------TGCTCAATACTCGCTTTCTCTTTTAGAACCG---------CAACTCCCCGAGAAGGGGAAGGTCACTCAATAGGGA-----------------------------------CGATAACAACGCGAAGGAG---GAG-----GAGTACCAAA---AGCA-----GACA--CACT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTTC----GAC--CGTGTTGTAC--ATATTT-TGGTTATTGATAAA-------CCATTTACGTATGTA--------------------GACCGTGT-TCCGGACTTATCTTATCAGCTCCCGAACACGCAATTTC---CCATTCGATACTTTCCACCA--------CCAA-TACTC-AA----------------------CACTCAATACCCGCTTTCTCTTTCAGAACGA---------CAGCTCCCCGAGGTGGTGAAGGTCACTCAG-AGGGA-----------------------------------GGAACACAACGCTGAGGAGGCGGAGGA--GGAGCACCAGG---AGCA-----CACA--CACA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTTC----GAC--T--TTTGTAC--TTTTTTTCGGTTATTGATAAA-------CCATTTACGTATGTA--------------------GACCGTGT-TCCGGACTTATCTTATCAGCAGCCGAACACGCAATTTC---CCATTCGATACTTTCCACCA--------CCAAATACTCCATTACCA--A--------------TACTCAATGCCCGCTTTCTCTTTCAGAACGA---------CAGCTCCCCGAGGTGCTGAAGGTCACTCAG-AGGGA-----------------------------------GGAATACAAAGCGG-GGAGGCGGAGGA--GGTG-------------------------CACA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTTC----GAC--TGTATTGGTT--AG-TTT-TGGTTATTGATAAA-------CCATTTACGTATGTA--------------------GACTGTGT-TCCGGACTTATCTTATCAGCTCCCGAACACGCAATTTC---CCATTCGATACTTTCCACCA--------CCA------------------------------------TAATGCTTGCTTTCTCTTTCAGAACGA---------AACTTCCCCGTGGCGGTGAAGGTCACTCAG-AGGAA-----------------------------------GGAAAACAACGCGGAGGAG---AAGGCGAGGAGCAGCAGC---AGCA------------GCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTTC----GAC--TGTATTGGTT--AA-TTT-TGGTTATTGATAAA-------CCATTTACGTATGTA--------------------CACTGTGT-TCCGGGCTTATCTTATCAGCTCCCGAACACGCAATTTC---CTATTCGATACTTTCCACCA--------CCAG---------------CA--------------TTCTCAATACTCGCTTTCTCTTTCAGAACGA---------AAGTTTACCGAAGTGGTGAAGGTCACTCAG-AGGAA-----------------------------------GGAACACAACGCGGAGGAG---AAGGA--GGAGCAGCAG---------------------CA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGTC----GAC--TGAATAGAGT--AT-TTT-TGGTTATTGATAAA-------CCATTTACGTGTGTA--------------------GACTGTGT-TGTGGACTTATCTTATCAATTCCCGAACACGCAATTTC---CCGTTCGATACTTTCCACCA--------TCAA------------CGCCG--------------TACTCAATACTCGCTTTCTCTTTCAGAACAA---------CAGCTCCCTCAGTTGGTGAAGGTCACTCAG-AGGGA-----------------------------------GGAATACTACGCGGAGAAG---GAGGA--GGAGCAGTCGG---AGCA-----CTCA--CACA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AA-------------AATTGGT---AT-TAT-T-AATATGGAAAGT-------ACTTTTACGTGTGGAGGAGAGTCATTATTTG----GGCAGGGT-TCCTGACTTATCTTATCAGCTCCCAAACACGCAATTTC---CCATTCGACAGT-TCCTCTG--------CCAA-TA---------CACCC--------------TGCTTAATATTCGCTTTCTCTTTTAGAGCGA---------CAGCTCCCCGAGGCGCTGAAGGTCACTCAA-CAAAA-------------------------GGC---------AGT---AGCAGGAGGAG---GAGAC--GGAC---------------------CA--CACA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AA-----------------GAGT--AC-TTT-CCGCTATTGAAAAAAAAACACACATTTACGTGTGTA--------------------GACCTTGTTTCCGGACTTATCTTATCAGCTCCCGAATACGCAATTCA---CCATTCGATACCCGCCGATG--------CCAA-T-----------AACT--------------TATTCCACA-TTGCTTTCTCTTTCAGGCCGA---------TAGCTTCCCGGAGTGGTGAGGGTCACTCAG-GAACAGAAACAGAAA-GGAGAAGACCAAAAAGCAGGA-----GACACTAACCGCAGGAG---GAGGA--GGAGGGCCAGC---AACAGCTCGCCCACCCACA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................................................................................................................................................AGCTTCCCGGAGTGGTGAGGGTCACT..........................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................AGAAGACCAAAAAGCAGGA-----............................................................	19	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................CAGGA-----GACACTAACCGCAGGAG---GAT.....................................	25	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................AACAGAAA-GGAGAAGACCAAA.........................................................................	21	1	1.00	1	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................CAGC---AACAGCTCGCCCACC....	19	1	1.00	1	0	1	0	0	0	0
.......................................................................................................CTTATCTTATCAGCTCCCGAATACGC.....................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................AACCGCAGGAG---GAGGA--GGAGGGCCA........................	25	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................GAAGACCAAAAAGCAGGA-----GACACT......................................................	24	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................GAACAGAAACAGAAA-GGAGAA................................................................................	21	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................GTGGTGAGGGTCACTCAG-GA....................................................................................................	20	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................GCAGGAG---GAGGA--GGAGGGC..........................	19	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................ACTAACCGCAGGAG---GAGGA--GGA..............................	22	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................GCTTCCCGGAGTGGTGAGGGTCACTCA........................................................................................................	27	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................GCAGGAG---GAGGA--GGAGGG...........................	18	2	0.50	1	1	0	0	0	0	0

droBip1

T-----------------------------C-TGGCTATTGAAAAA-----ACACATCTACGTGTGTA--------------------GACCTTGTTTCCGGGCTTATCTTATCAGCTCCCGAATACGCAATATTT-CCCATTCGATACTCGCCAATG--------CCAA-T-----------AACT--------------TATTCCACA-TTGCTTTCTCTTTCAGGCCGACTCTCTTCATAGCTTCCCGGAGTGGTGAGGGTCACTCAG-GAACAAAAAAAGGAACGGAGAAGAACAAAAAGCAGGA---GG-ACACAAGCCGGAGGTG---GAGGA--GGAGGGCCAACAAAAGCT---CTCCCA--CACA	Size	Hit Count	Total Norm	Total
No Reads

dp5

AAGAATAGAAGAAC--CTTGAAC--TCCCATTCGG---------------------------------TCGGAGCCTTCACCTGCCTAG--------TCACCACCAATCTTATCAGTTTTTA------------T---CAATTGGGGGCTTTTTACGAAATTGGTAC--GA------------AGTTCGTTTAACATTTCACATTTTCTGTGTGTTTCTTTTTG-----------------CAGCACCC-GAA--GGAGCAG--CGTCCAA-GGAGT---------------------------CAGGAGCTAG-TCGCTAGC-----CG----GGAGG--AGACGACCAAA---CACA-----CACA--CACA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................................................................................................................AA-GGAGT---------------------------CAGGAGCTAG-TCGCT......................................................	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................CTTTTTG-----------------CAGCACCC-GAA--GGA....................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................CGCTAGC-----CG----GGAGG--AGACGACC.........................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................CAG--CGTCCAA-GGAGT---------------------------CAGG..................................................................	19	1	2.00	2	0	0	0	0	0	0	2	0	0	0
........................................................................................................................................................................................................................................................................CGTCCAA-GGAGT---------------------------CAGGAGCTAG-TC.........................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................GCTAGC-----CG----GGAGG--AGACGACC.........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................AG-TCGCTAGC-----CG----GGAGG--A................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GAGG--AGACGACCAAA---CACA-----CACA--CAC.	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................G--CGTCCAA-GGAGT---------------------------CAGGAGCT..............................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................TAGC-----CG----GGAGG--AGACGACCAAA---...................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................AG--CGTCCAA-GGAGT---------------------------CAGGA.................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GCAG--CGTCCAA-GGAGT---------------------------CAGGAGC...............................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................GCACCC-GAA--GGAGCAG--CGTCCAA-GGA...................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GACGACCAAA---CACA-----CACA--CAA.	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................CCAA-GGAGT---------------------------CAGGAGCTAG-TCGCTAG....................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................GT---------------------------CAGGAGCTAG-TCGCTAGC-----CG----GGC.....................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................CGCTAGC-----CG----GGAGG--AGACG............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AAGAATAGAAGAAC--CTTGAAC--TCCCATTCGG---------------------------------TCGGAGCCTTCACCTGCATAG--------TCACCACCAATCTTATCAGTTGTTA------------T---CAATTGGGGGCTTTTTACGAAATTGGTGC--GA------------AGTTCGTTCAACATTTCACATTTTCTGTGTGTTTCTTTTTG-----------------CAGCACCC-GAA--GGAGCAG--CGTCCAA-GGAGT---------------------------CAGGAGCTAG-TCGCTAGC-----CG----GGAGG--AGACGACCAAA---CACA-----CACA--CACA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................................................................................................................................................................................GCAG--CGTCCAA-GGAGT---------------------------CAGGAGCT..............................................................	24	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................GTCCAA-GGAGT---------------------------CAGGAGCTAG-T..........................................................	22	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................AG-TCGCTAGC-----CG----GGAGG--AGACGA...........................	23	1	1.00	1	0	0	0	0	0	1

dsi_5618

2l:1949767-1949916 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-33.4	-33.2	-33.2