ID:

dsi_5608

 Coordinate:

x:12637144-12637418 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-38.7 -38.6 -38.6

Flybase annnotation

exon [x_12637419_12637649_+]; CDS [x_12637419_12637649_+]; exon [x_12636724_12637143_+]; CDS [x_12636724_12637143_+]; intron [x_12637144_12637418_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGAATCTAGTGATGCACCCCGCCGCCAAGGTCCTGCACTACGCCGTTGAGGTAAGCCATCGTCCCTGCGGTTTGACAAATATCATAGCTCAGAAATCAGTAAAACAATATAGAATTGTCTGCTTTGCAAATATTTACGTGACTTGAAAACGCTTCGTAATCCCCAAGTCCCCAGACCGCAATCTCTGTAAACAAGTCGCACGTGTGGCCTGTGAAGCAACGTCATGCAGATATATAGTATAGTAGTCAGAACCCAAATCGAAACCAGCGACTGTTGCCAATGGTGCCATGTTTATCACCTCTGTTTGCCGTCCATTCCATTGCAGCTCTTTGAGGGCATGAAGGCGTACCGCGGCGTCGATGGCAAAATCCGCAT
**************************************************..........(((.((((((((((............(((........)))..............(((.(((((.(((..((((((.((((((........(((((................((((........))))...(((.(((((....))))).))))))))...)))))).))))))...))).))))).)))....)))))))....))).)))..****************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 O001
Testis
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
..........................................................................................................................................................................................................................................................................................................................................TGAGGATATGAAGGCGTACCGCA...................... 23 3 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................AACCCAAATCGAAACCAGCGACTG...................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...............................CCTGCACTACGCCGTTGAGC.................................................................................................................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................GTAAGCCATCGTCCCTGC................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................GCAAATATTTACGTGACTT....................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CTACGTGACGTGTAAACGCT.............................................................................................................................................................................................................................. 20 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................CAAGTCGCACGTGTGGCCT..................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................GCTCTTTGAGGGCATGAAGGCGTACCG........................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................TAGTCAGGACCTAAGTCGA.................................................................................................................. 19 3 8 0.75 6 0 0 0 0 6 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................TCTTTGAGGGCGTGAA................................. 16 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................GCGTGAAAGCGTACCGTGG..................... 19 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0
...............................................................................................................GAATTGTCTGCTTTGAAC...................................................................................................................................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................................................................................................................................TAAGGGCGTACCGCGG..................... 16 2 5 0.20 1 0 0 0 0 0 0 1 0 0 0
...............ACCCCGCCGCCAGGG......................................................................................................................................................................................................................................................................................................................................................... 15 1 6 0.17 1 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................TCTTTGAGGGCATAAA................................. 16 1 7 0.14 1 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................GTTGCACGTGTGGCC...................................................................................................................................................................... 15 1 12 0.08 1 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................GCAAATGTTGACGTGA.......................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0
..............................................................CCGTGCGGTTTGACCA......................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0
............................................................GTCCGTGCGGTTTGAT........................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TCTTAGATCACTACGTGGGGCGGCGGTTCCAGGACGTGATGCGGCAACTCCATTCGGTAGCAGGGACGCCAAACTGTTTATAGTATCGAGTCTTTAGTCATTTTGTTATATCTTAACAGACGAAACGTTTATAAATGCACTGAACTTTTGCGAAGCATTAGGGGTTCAGGGGTCTGGCGTTAGAGACATTTGTTCAGCGTGCACACCGGACACTTCGTTGCAGTACGTCTATATATCATATCATCAGTCTTGGGTTTAGCTTTGGTCGCTGACAACGGTTACCACGGTACAAATAGTGGAGACAAACGGCAGGTAAGGTAACGTCGAGAAACTCCCGTACTTCCGCATGGCGCCGCAGCTACCGTTTTAGGCGTA
******************************************************************************************************..........(((.((((((((((............(((........)))..............(((.(((((.(((..((((((.((((((........(((((................((((........))))...(((.(((((....))))).))))))))...)))))).))))))...))).))))).)))....)))))))....))).)))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M053
female body
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
..................................CGTGATGCGGCAACTCCATTC................................................................................................................................................................................................................................................................................................................................ 21 0 1 3.00 3 3 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................CACGGTACTAATAGCGGAGAA........................................................................ 21 3 4 0.25 1 0 1 0 0 0 0
...................................................................................................................................................TTGCGAAGCAGTAGGGGTA................................................................................................................................................................................................................. 19 2 4 0.25 1 0 0 1 0 0 0
..............................................................................................................................................................TAGGTGTTCAGGGGACT........................................................................................................................................................................................................ 17 2 14 0.07 1 0 0 0 0 0 1
...........................................................................................................................................................................................................................................................................................................................................................TGGCGGCGCGGCTACCG........... 17 2 17 0.06 1 0 0 0 1 0 0
.................................................................................................................................................................................................................................................................................................................ATGGCAGGTACGGTAA...................................................... 16 2 20 0.05 1 0 0 0 0 1 0
.................................................................ACGCCAACTTGTTTATA..................................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0
...........................................................................................................................................................................................................................................................................GCTGCCAACAATTACCACG......................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0
......................................................................................................................................ATGCACTGAGCTTGTGCA............................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:12637094-12637468 + dsi_5608 AGAATCTAGTGATGCACCCCGCCGCCAAGGTCCTGCACTACGCCGTTGAGGTAAGC--CATCGTCCCTG-C---GGTTTG-A--------------------C-----------AAATAT-----------CATAGCTCAGAAATCAGTAAAACAATATA---------------------------------------------------------------------------------GAA-------TTGT----CTGCTT--T-----GCAAATATT----TACGTGACTTGAAAACGCTTCGTAAT-------------------------CCCCAAGTCCCCAG----------------------AC--------CGCAATCT--CTGTAAACAA------GTCGCACGTGTGGCCTG-TGA-AGCAACGTCATGC--AG---AT--ATATAGTATAG--------T--A------------------------GT---------------------CAGAACCCAA------------ATCGA------------AACCA-------GCGACTGTTGCCAATGGTGCCATGT------------------------TTATCACCTCT--GT---TTG-CCG----------TCCATTCC--ATTGCAGCTCTTTGAGGGCATGAAGGCGTACCGCGGCGTCGATGGCAAAATCCGCAT
droSec2 scaffold_21:1046224-1046585 + AGAATCTAGTGATGCACCCCGCCGCCAAGGTCCTGCACTACGCCGTTGAGGTAAGC--CATCGTCCCTG-C---GGTTGG-A--------------------C-----------CAATAT-----------CATAGCTCAGAAATCAGTAAAACAATATA---------------------------------------------------------------------------------GAA-------TTGT----CTGCTT--T-----GCAAATATT----TACGTGACTTGAAAACGCTTCGTAAT-------------------------CCCCAAGTCCCCAG----------------------AC--------CGCAATCT--CTGTAAACAA------GTCGCACGTGTGGCCTG-TGA-AGCAACGTCATGC--AG---AT--ATATAGTATAG--------T--A------------------------GT---------------------CAGAACCCAA------------ATCGA------------AATCA-------GCGACTGT-------------------------------------TGTCTTATCACCTCT--GT---TTG-TCG----------TCCATTCC--ATTGCAGCTCTTCGAGGGCATGAAGGCGTACCGCGGTGTCGATGGCAAGATCCGCAT
dm3 chrX:13292988-13293413 + AGAATCTAGTGATGCATCCCGCCGCCAAGGTCCTGCACTACGCCGTTGAGGTAAGC--CATCGGTCCTG-C---GTTTTC-ACACTAAGAACATA-----TCAGTAACAGCAACAAAAAG-----------CATAGCTTAGAAAAAAGTTGAACAATGTA-----------------------------------------------------------------------------ACTAGAA-------TTCCTTGTTGAG----T-----GCAAATATT----TACGTGACTTGAAAACGCTTCGTAAT-------------------------CCCCAAGTCCCCAG----------------------AC--------CGCAATCT--CTGTAAACAA------GTCGCACGTGTGACTTG-TGA-AGCAACGTCATGC--AG---AT--TTATAGTATA---------T------ATGTACATATAGTGTA-----GT---------------------CAGAACCCAA------------ATCGA------------AATCA-------GCGACTGTTGCCAATGGTGCGATGT--------------------TGTCTTATCACCTCT--GTAAT--G-CCA----------TCCATTCC--ATTGCAGCTCTTTGAGGGCATGAAGGCGTACCGCGGCGTCGATGGCAAGATCCGCAT
droEre2 scaffold_4690:13575214-13575708 - AGAATCTGGTGATGCACCCAGCCGCCAAGGTTCTGCACTACGCCGTTGAGGTAAGC--CATAGTCCT---------------------------------TCAGTAGCAGCAGCATAAAG-----------TATAACTCCCAAAAGAGCACAACAATATAGAACTAAAATGCGTGAATATCAAATAGCTCCAGATATTTCTTCAAATACCTCCATGTTTAACTTGTGAGTAGGAGCAACCAGCAGAAACGATTTGCTCTTGACTT--T-----GTAAA-GTT----GACGTGACTTGAAAACGCTTTGTAAT-------------------------CCC-AAGTTCCCAG----------------------ACCC------CTCAATCT--CTCTAAACAA------GTCGCACGTGTGGCCTG-GGA-GCCAACGTCATAC--AG---AT--ATATAGTATACGTAACATAT------ATGTACATATAGTGTA-----GT---------------------CAGAACCGAA------------ATCGA------------AATCA-------GCGACTGTTGCCAATGGTGCCATGT--------------------TGTCTTATCAACTTTT-----T--G-CCA----------TTCACGCC--ATTGCAGCTCTTTGAGGGCATGAAGGCGTACCGCGGTGTCGACGGCAAGATCCGCAT
droYak3 X:7573951-7574248 + TC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTT--T-----GCAAATATT----TACGTGACTTGAAAACGCTTTGTAAT-------------------------CCCCAAGTCACCAA------------GTC-ACCAAGTC--------CGTAATCT--CTGTAAACAA------GTCGCACGTGTGGCCTG-TGA-ACCAACGTCATGC--AG---AT--ATATAGTATA---------T--ACCTATGTACATATAGTATAGTGCAGT---------------------CTGAACCCAA------------ATCGAAATCGAAATCGAAATCA-------GCGACTGTTGCCAATG-TG-----C----------------------TGTTATCAACTCTA-----T--G-CCA----------TTCTTTCCATATTGCAGCTCTTTGAGGGCATGAAGGCGTACCGCGGCGTCGATGGCAAGATTCGCAT
droEug1 scf7180000408958:311572-311966 - AAAACCTGGTCATGCATCCTGCCGCCAAGGTCCTTCACTACGCTGTTGAGGTATGTAAAATCA--CCTG-TTAGGGTTTA-A--------------------T-----------CAGT----------AATCCTAG---AGA----------------------------------------------------------------------------------------------AACTAGAACAGACGATTCTTTCCCGAATTCCC--G--CCAACTATT----TACGTGACTTGGCAGCGATTTGTAAT-------------------------CCCGTAATCCCCAG----------------------TC--------CGTAATCT--CTGTAAACAA------GTCGCACGTGTGGCCCG-TGG-CCCAACGTCATCC--GA---ATGCATTTAGTATT---------T--A---ATATATATATAGTATA-----GT---------------------TTGAATCCGA------------ATCAA------------AAT-A-------GGGACTGTTGCCAATGGTGCCATGT--------------------TGTCTTATCAATTCTA-----T--G-CCG----------TTCGATCT--TTTGCAGCTTTTTGAGGGCATGAAGGCATACCGCGGCGTTGATGGCAAGATCCGCAT
droBia1 scf7180000298389:1278741-1279005 + G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGTATTTACATACGTGACTCGAGAGCGTCTTGTAAT-------------------------CCCGTAATCCCCGA----------------------TC--------CGTAATCT--CTGTAAACAA------GTCGCACGTGCGGCCCG-TGC-GCTGACGTCATCC--GA--------TCTG-----------------------GCACATATAGCTGG-----G-CATG------------AGAATCAGAATCCGA------------ATCGA------------AGGCA---------GGCTGTTGCCAATGGTGCCATGT--------------------TGTCTTATCAATCGCC-----C--G-CCT----------TTCGATCC--ATTGCAGCTCTTCGAGGGCATGAAGGCGTACCGGGGCGTCGACGGCAAGATCCGCAT
droTak1 scf7180000414375:382026-382354 - TC------------------------------------------------------------------------------------------------------------------------------------------------TGTAGAAC----------------------------------------------------------------------------------AACTAGAAGAAACGATTTGTTCTCGAATT--C-----GCAAATATT----TACGTGACTTGAGAGCGCTTTGTAAT-------------------------CCCGTCGTCCCCAG----------------------TC--------CGTAATCT--CTGTAAACAA------GTCGCACGTGTGGCCCG-TGC-CCCGACGTCATCC--GA---ATGCATT-----------------------CTGTGTATATAGTATA-----G-AATGAGAATCAGAATCAGAATCCGAATGCGAATCAGCATTCGAATCAA------------AATCA---------GGCTGTTGCCAATGGTGCCATGT--------------------TGTCTTATCAGTTC---GT-----T-TGA----------TTCGATTT--ATTGCAGCTCTTTGAGGGCATGAAGGCGTATCGCGGCGTCGACGGCAAGATCCGCAT
droEle1 scf7180000491272:1610715-1610980 - T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----TACGTGACTTGAGAGCGGTTTGTTGTCTTGCTTCCATCCCCCTTGTTCCAACCCGTAATCCGCAA----------------------GC--------CGTAATCT--CTGTAAACAA------GTCGCACGTGTGGCCCA-CGG-GCTGACGTCATCCCCGA---GTGCATTTAGTATA---------T--A------------------------GT---------------------AAGAAGGCGT------------ATTAA------------GAT------------------GCC-ATGTTGGCATGT----------TGT-------GGTCTTATCAATTCTA-----T--G-CCGTT--------TCCCATTC--ATTGCAGCTCTTCGAGGGCATGAAGGCGTACCGCGGCGTCGACGGCAAGATCCGAAT
droRho1 scf7180000778361:2127-2427 - AATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTAGAAGAATC-----------GATTT--C-----GCGAACTTT----TACGTGACTTGAGAGCATCTTGTTGTCGTGCTTCCATACCTCTTACTCCATCCCGTGATTCCCAG----------------------AC--------CGTAATCT--GTGTAAACAA------GTCGCACGTGTGGCCCGATGTGGCTAACGTCATCC--GA---GTGCATTTAGTACA---------T--A------------------------AT---------------------CAGAACGTGA------------ATCAA------------GATC---------CCACTGTTGTCAATGGTGCGATGT--------------------TCTCTTATCAATCCTA-----T--G-TCG----------TTCCATCT--ATTGCAGCTCTTTGAGGGCATGAAGGCGTACCGCGGCGTCGACGGCAAGATCCGTAT
droFic1 scf7180000454050:1293871-1294122 + TGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATG----TACGTGACTT----------T---------------------------------GTAGTCCCGAG----------------------TC--------TGTAATCT--CTGTAAACAA------GTCGCACGTGTGGTCCG-TGAAACTGACGTCATCC--GA---GTGCACTTACTATA---------TTTT---GTGTACACATAGTC-------------------------ACAATCCGAATCCGA------------ATCGG------------GATCG---------GGCTGTTGCCAATGGTGCCATGT--------------------TGTCTTATCAATCCCC-----T--G-CCT-----------TTGCCTT--TTTGCAGCTCTTCGAGGGAATGAAGGCGTATCGCGGCGTCGACGGGAAGATCCGCAT
droKik1 scf7180000302696:817742-818184 - AGAACCTGGTGATGCACCCGGCCGCCAAGGTGCTGCATTACGCTGTCGAGGTGAGC---ATTACTTCTGGT---GTATTCCCCACTATATTCACGACTGGTAC-----------CAATATCGAATGATGTT----------------------------------------------------------------------------------------------------------GTC--------------------GAGAACTCATGGAACGTGTGTTTACATACGTGACTCTCGAAC-----------------------CAGTCGCTTCTTCCCGTAAACCGTAA-------------TCCA-TAA-TC-CGTCGGCCATAATCTCGCTGTCAACAACAACGCGTCGCACGTGTGGCTTA-TGA-ACTGACGTCATGC--GGTTTAT--ATATAGTATA---------T--A---G----TATATTGTATG-----GG---------------------CAGAATCCGA------------ATCAA------------GATCACAGTCATCCGACTGTTGTCAATGGTGCCAAGT--------------------AGTCTTATCACTCATCCAA-AT--G-CCATTTCCAATCT--GATTCC--ATTGCAGCTCTTCGAGGGCATGAAGGCGTACCGCGGCGTCGACGGCAAGATTCGAAT
droAna3 scaffold_13335:841572-841874 - AGAATCTAGTCATGCATCCGGCCGCCAAAGTCCTTCACTACGCCGTAGAGGTAGGT--GT-----------------------------------------TCCAAG-------------CCAACA-------------------------------------------------------------------------------------------------------------------------------------------------------CTA-C----TAGGTTGCTAGG---CG-ATTGTAGT-------------------------CCAGTAATCC--------------------AGTAATCC--------GGTAATCT--CTGCCAGCAA------GCGGCACGTGTGGTCTG-G---GCTGACGTCA--------------------------------------------------------------------------------------GAAGGCGA-------------TCGT------A-----GT------------TGCCATCGGCAGTGGCTGGATGATAATCCTATCGGTGATCTGATCTCTAATCCGCAT--------CTC-CCA----------TCGTTCCA--ATTGCAGCTCTTCGAGGGCATGAAGGCGTACAGGGGCGTCGACGGCAAGATCCGCAT
droBip1 scf7180000396006:93543-93907 - AGAATCTAGTCATGCATCCGGCCGCCAAAGTCCTCCACTACGCCGTAGAGGTAGGT--TT------------------------------CCACGGTTGTTTCCAAG-------------CAATCGGTGTT----------------------------------------------------------------------------------------------------------GCTAGGGGAGGCAATGCCTT-----CCC--C-----GCGAAA--------TCGTGACTCTTGACT-----------------------CC--------GGCTCGTGCCTGCA--CTTCCAGCCGTAGTCCGGTAA-TC-C------GTCGATCT--TTACAAACAA------GTGGCACGTGTGGACTGCTGGGGCTGACGTCA--------------------------------------------------------------------------------------GAACC-AG------------ATCGT------------AGT-----------TGCCATCGGCAGTGGCCTGATGATAATCCAATCAGTGATCTGATCTCTAATCCGTAC--------CTC-CCA-------TCG--GCTTTA--ATTGCAGCTCTTCGAGGGCATGAAGGCATATAGGGGCGTCGATGGCAAGATCCGCAT
dp5 XL_group1a:5959431-5959537 - G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGTTGCCAAAGG-------G--------------------TGTCTTATCAGGCGACTGA---CTGATCG----------ATCGATTC--GTTGCAGCTCTTCGAGGGCATGAAGGCGTACCGGGGGGTCGATGGAAAGATCCGCAT
droPer2 scaffold_25:1414614-1414720 + G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGTTGCCAA-------ATGG--------------------TGTCTTATCAGGCGACTGA---CTGATCG----------ATCGATTC--GTTGCAGCTCTTCGAGGGCATGAAGGCGTACCGGGGGGTCGATGGAAAGATCCGCAT
droWil2 scf2_1100000004909:4920569-4920638 - TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC----------TCCGTTTT--CTTATAGCTATTCGAGGGCATGAAGGCTTATCGCGGTGTTGATGGTAAAATTCGGAT
droVir3 scaffold_12932:545277-545345 + T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-CCG----------TCTC-ATC--GTTGCAGCTCTTTGAGGGCATGAAGGCGTACCGCGGCATCGATGGCAAGATTCGCAT
droMoj3 scaffold_6473:992779-992836 - C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGCAGCTCTTTGAGGGCATGAAGGCCTACCGCGGCGTGGACGGCAAGATACGCAT
droGri2 scaffold_14853:299909-299978 + TT-----G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC--GTTGCAGCTCTTTGAAGGCATGAAAGCGTATCGTGGAGTCGATGGCAAAATTCGCAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGAATCTAGTGATGCACCCCGCCGCCAAGGTCCTGCACTACGCCGTTGAGGTAAGC--CATCGTCCCTG-C---GGTTTG-A--------------------C-----------AAATAT-----------CATAGCTCAGAAATCAGTAAAACAATATA---------------------------------------------------------------------------------GAA-------TTGT----CTGCTT--T-----GCAAATATT----TACGTGACTTGAAAACGCTTCGTAAT-------------------------CCCCAAGTCCCCAG----------------------AC--------CGCAATCT--CTGTAAACAA------GTCGCACGTGTGGCCTG-TGA-AGCAACGTCATGC--AG---AT--ATATAGTATAG--------T--A------------------------GT---------------------CAGAACCCAA------------ATCGA------------AACCA-------GCGACTGTTGCCAATGGTGCCATGT------------------------TTATCACCTCT--GT---TTG-CCG----------TCCATTCC--ATTGCAGCTCTTTGAGGGCATGAAGGCGTACCGCGGCGTCGATGGCAAAATCCGCATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCAA------------ATCGA------------AACCA-------GCGACTG................................................................................................................................................2412.00200200000000000000
...............................CCTGCACTACGCCGTTGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
..................................................GTAAGC--CATCGTCCCTG-C---.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.................................................................................................................................................................................................................................................................................GCAAATATT----TACGTGACTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................CAA------GTCGCACGTGTGGCCT..............................................................................................................................................................................................................................................................................................................1911.00100001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTTGAGGGCATGAAGGCGTACCG........................2711.00100100000000000000
droSec2
AGAATCTAGTGATGCACCCCGCCGCCAAGGTCCTGCACTACGCCGTTGAGGTAAGC--CATCGTCCCTG-C---GGTTGG-A--------------------C-----------CAATAT-----------CATAGCTCAGAAATCAGTAAAACAATATA---------------------------------------------------------------------------------GAA-------TTGT----CTGCTT--T-----GCAAATATT----TACGTGACTTGAAAACGCTTCGTAAT-------------------------CCCCAAGTCCCCAG----------------------AC--------CGCAATCT--CTGTAAACAA------GTCGCACGTGTGGCCTG-TGA-AGCAACGTCATGC--AG---AT--ATATAGTATAG--------T--A------------------------GT---------------------CAGAACCCAA------------ATCGA------------AATCA-------GCGACTGT-------------------------------------TGTCTTATCACCTCT--GT---TTG-TCG----------TCCATTCC--ATTGCAGCTCTTCGAGGGCATGAAGGCGTACCGCGGTGTCGATGGCAAGATCCGCATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............CACCCCGCCGCCAAGGTCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGATGGCAAGATCCGCAT2111.0011000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGGCGTACCGCGGTGTCGATGGC...........2711.0010010
.............GCACCCCGCCGCCAAGGTCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTCGAGGGCATGAAGGC..............................2011.0010010
dm3
AGAATCTAGTGATGCATCCCGCCGCCAAGGTCCTGCACTACGCCGTTGAGGTAAGC--CATCGGTCCTG-C---GTTTTC-ACACTAAGAACATA-----TCAGTAACAGCAACAAAAAG-----------CATAGCTTAGAAAAAAGTTGAACAATGTA-----------------------------------------------------------------------------ACTAGAA-------TTCCTTGTTGAG----T-----GCAAATATT----TACGTGACTTGAAAACGCTTCGTAAT-------------------------CCCCAAGTCCCCAG----------------------AC--------CGCAATCT--CTGTAAACAA------GTCGCACGTGTGACTTG-TGA-AGCAACGTCATGC--AG---AT--TTATAGTATA---------T------ATGTACATATAGTGTA-----GT---------------------CAGAACCCAA------------ATCGA------------AATCA-------GCGACTGTTGCCAATGGTGCGATGT--------------------TGTCTTATCACCTCT--GTAAT--G-CCA----------TCCATTCC--ATTGCAGCTCTTTGAGGGCATGAAGGCGTACCGCGGCGTCGATGGCAAGATCCGCATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGGCGTACCGCGGCGT..................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTACCGCGGCGTCGATGGC...........2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TCTAGTGATGCATCCCGCCGCCAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTG-TGA-AGCAACGTCATGC--A........................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................ATCT--CTGTAAACAA------GTCGCACGT.....................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGACTTG-TGA-AGCAACG.................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
....................GCCGCCAAGGTCCTGCACTACGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGGCATGAAGGCGTACCGCG......................2412.0020000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCGATGGCAAGATCCG...1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATGAAGGCGTACCGCGGCGT..................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA------------AATCA-------GCGACTGTTGCCAATGGTGCG..................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GCCAAGGTCCTGCACTACGCCGTTGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GCCAAGGTCCTGCACTAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCAATGGTGCGATGT--------------------TGTCT.....................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
..AATCTAGTGATGCATCCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCAATGGTGCGATGT--------------------TGTC......................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGAAGGCGTACCGCGGCGTCGA...............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................CGCCAAGGTCCTGCACTACGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCTCTTTGAGGGCATG...................................2011.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT--GTAAT--G-CCA----------TCCATTCC--ATTGC....................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGGCATGAAGGCGTACCGCGGC....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGCGGCGTCGATGGCA..........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGGCGTACCGCGGCGT..................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT--G-CCA----------TCCATTCC--ATTGCA...................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CCGCCAAGGTCCTGCACTACGCCGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................A------GTCGCACGTGTGACTTG-TGA-........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGTCGATGGCAAGAT......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTACCGCGGCGTCGATGGCAAGA.......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGGGCATGAAGGCGTACCGCG......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTTG-TGA-AGCAACGTCA..............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CAAGGTCCTGCACTACGCCGTTGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................ATT----TACGTGACTTGAAAACGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCGTCGATGGCAAGATCC....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATGAAGGCGTACCG........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTCGATGGCAAGATCC....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCAATGGTGCGATGT--------------------TGT.......................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CGCACGTGTGACTTG-TGA-AGC.....................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA----------TCCATTCC--ATTGCAG..................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGAGGGCATGAAGGCGTA...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCA-------GCGACTGTTGCCAATGGTG....................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................TA-----TCAGTAACAGCAACAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------TCCATTCC--ATTGCAGCTCTTTGAG.........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCA-------GCGACTGTTGCCAATGG......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCATGAAGGCGTACCGCGGCG...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------TGTCTTATCACCTCT--GTAAT--G-CCA----------TC.................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TTAGAAAAAAGTTGAACAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCACCTCT--GTAAT--G-CCA----------TC.................................................................2111.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCGCGGCGTCGATGGCC..........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................CGTAAT-------------------------CCCCAAGTCCCCAG----------------------A.................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AGAATCTAGTGATGCATCCCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGA------------AATCA-------GCGACTGTT..............................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTACCGCGGCGTCGATGG............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CCGCCGCCAAGGTCCTGCACTACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTACCGCGGCGTCGACC.............1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
droEre2
AGAATCTGGTGATGCACCCAGCCGCCAAGGTTCTGCACTACGCCGTTGAGGTAAGC--CATAGTCCT---------------------------------TCAGTAGCAGCAGCATAAAG-----------TATAACTCCCAAAAGAGCACAACAATATAGAACTAAAATGCGTGAATATCAAATAGCTCCAGATATTTCTTCAAATACCTCCATGTTTAACTTGTGAGTAGGAGCAACCAGCAGAAACGATTTGCTCTTGACTT--T-----GTAAA-GTT----GACGTGACTTGAAAACGCTTTGTAAT-------------------------CCC-AAGTTCCCAG----------------------ACCC------CTCAATCT--CTCTAAACAA------GTCGCACGTGTGGCCTG-GGA-GCCAACGTCATAC--AG---AT--ATATAGTATACGTAACATAT------ATGTACATATAGTGTA-----GT---------------------CAGAACCGAA------------ATCGA------------AATCA-------GCGACTGTTGCCAATGGTGCCATGT--------------------TGTCTTATCAACTTTT-----T--G-CCA----------TTCACGCC--ATTGCAGCTCTTTGAGGGCATGAAGGCGTACCGCGGTGTCGACGGCAAGATCCGCATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTT-----T--G-CCA----------TTCACGCC--ATTG.....................................................2411.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGGGCATGAAGGCGTACCG........................2311.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATGAAGGCGTACCGCG......................2011.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGGCGTACCGCGGTGTC.................2111.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTTGAGGGCATGAAGGCG.............................2211.0010000100
.............................................................................................................................................................ATAGAACTAAAATGCGTGAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTTGAGGGCATGAAGGCGTAC..........................2411.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA------------AATCA-------GCGACTGTTGCCAATGGT.....................................................................................................................................2511.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTTGAGGGCATGAAGGC..............................2111.0010100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATGAAGGCGTACCGCGGT....................2211.0010000010
...............................................................................................................................................................................................................................TGTGAGTAGGAGCAACCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
............................................GTTGAGGTAAGC--CATAGTCCT---------------------------------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
droYak3
TC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTT--T-----GCAAATATT----TACGTGACTTGAAAACGCTTTGTAAT-------------------------CCCCAAGTCACCAA------------GTC-ACCAAGTC--------CGTAATCT--CTGTAAACAA------GTCGCACGTGTGGCCTG-TGA-ACCAACGTCATGC--AG---AT--ATATAGTATA---------T--ACCTATGTACATATAGTATAGTGCAGT---------------------CTGAACCCAA------------ATCGAAATCGAAATCGAAATCA-------GCGACTGTTGCCAATG-TG-----C----------------------TGTTATCAACTCTA-----T--G-CCA----------TTCTTTCCATATTGCAGCTCTTTGAGGGCATGAAGGCGTACCGCGGCGTCGATGGCAAGATTCGCATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTTGAGGGCATGAAGGC..............................2112.00201100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTTGAGGGCATGAAGGCG.............................2211.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGGCGTACCGCGGCGTC.................2111.00100000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGAAGGCGTACCGCGG.....................2011.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATGGCAAGATTCGCAT2011.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTTGAGGGCATGAAGGC..............................2011.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAATCA-------GCGACTGTTGCCAATG-TG-----C----------------------........................................................................................................2911.00110000000000
droEug1
AAAACCTGGTCATGCATCCTGCCGCCAAGGTCCTTCACTACGCTGTTGAGGTATGTAAAATCA--CCTG-TTAGGGTTTA-A--------------------T-----------CAGT----------AATCCTAG---AGA----------------------------------------------------------------------------------------------AACTAGAACAGACGATTCTTTCCCGAATTCCC--G--CCAACTATT----TACGTGACTTGGCAGCGATTTGTAAT-------------------------CCCGTAATCCCCAG----------------------TC--------CGTAATCT--CTGTAAACAA------GTCGCACGTGTGGCCCG-TGG-CCCAACGTCATCC--GA---ATGCATTTAGTATT---------T--A---ATATATATATAGTATA-----GT---------------------TTGAATCCGA------------ATCAA------------AAT-A-------GGGACTGTTGCCAATGGTGCCATGT--------------------TGTCTTATCAATTCTA-----T--G-CCG----------TTCGATCT--TTTGCAGCTTTTTGAGGGCATGAAGGCATACCGCGGCGTTGATGGCAAGATCCGCATSizeHit CountTotal NormTotal
No Reads
droBia1
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGTATTTACATACGTGACTCGAGAGCGTCTTGTAAT-------------------------CCCGTAATCCCCGA----------------------TC--------CGTAATCT--CTGTAAACAA------GTCGCACGTGCGGCCCG-TGC-GCTGACGTCATCC--GA--------TCTG-----------------------GCACATATAGCTGG-----G-CATG------------AGAATCAGAATCCGA------------ATCGA------------AGGCA---------GGCTGTTGCCAATGGTGCCATGT--------------------TGTCTTATCAATCGCC-----C--G-CCT----------TTCGATCC--ATTGCAGCTCTTCGAGGGCATGAAGGCGTACCGGGGCGTCGACGGCAAGATCCGCATSizeHit CountTotal NormTotal
No Reads
droTak1
TC------------------------------------------------------------------------------------------------------------------------------------------------TGTAGAAC----------------------------------------------------------------------------------AACTAGAAGAAACGATTTGTTCTCGAATT--C-----GCAAATATT----TACGTGACTTGAGAGCGCTTTGTAAT-------------------------CCCGTCGTCCCCAG----------------------TC--------CGTAATCT--CTGTAAACAA------GTCGCACGTGTGGCCCG-TGC-CCCGACGTCATCC--GA---ATGCATT-----------------------CTGTGTATATAGTATA-----G-AATGAGAATCAGAATCAGAATCCGAATGCGAATCAGCATTCGAATCAA------------AATCA---------GGCTGTTGCCAATGGTGCCATGT--------------------TGTCTTATCAGTTC---GT-----T-TGA----------TTCGATTT--ATTGCAGCTCTTTGAGGGCATGAAGGCGTATCGCGGCGTCGACGGCAAGATCCGCATSizeHit CountTotal NormTotal
No Reads
droEle1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----TACGTGACTTGAGAGCGGTTTGTTGTCTTGCTTCCATCCCCCTTGTTCCAACCCGTAATCCGCAA----------------------GC--------CGTAATCT--CTGTAAACAA------GTCGCACGTGTGGCCCA-CGG-GCTGACGTCATCCCCGA---GTGCATTTAGTATA---------T--A------------------------GT---------------------AAGAAGGCGT------------ATTAA------------GAT------------------GCC-ATGTTGGCATGT----------TGT-------GGTCTTATCAATTCTA-----T--G-CCGTT--------TCCCATTC--ATTGCAGCTCTTCGAGGGCATGAAGGCGTACCGCGGCGTCGACGGCAAGATCCGAATSizeHit CountTotal NormTotal
No Reads
droRho1
AATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTAGAAGAATC-----------GATTT--C-----GCGAACTTT----TACGTGACTTGAGAGCATCTTGTTGTCGTGCTTCCATACCTCTTACTCCATCCCGTGATTCCCAG----------------------AC--------CGTAATCT--GTGTAAACAA------GTCGCACGTGTGGCCCGATGTGGCTAACGTCATCC--GA---GTGCATTTAGTACA---------T--A------------------------AT---------------------CAGAACGTGA------------ATCAA------------GATC---------CCACTGTTGTCAATGGTGCGATGT--------------------TCTCTTATCAATCCTA-----T--G-TCG----------TTCCATCT--ATTGCAGCTCTTTGAGGGCATGAAGGCGTACCGCGGCGTCGACGGCAAGATCCGTATSizeHit CountTotal NormTotal
No Reads
droFic1
TGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATG----TACGTGACTT----------T---------------------------------GTAGTCCCGAG----------------------TC--------TGTAATCT--CTGTAAACAA------GTCGCACGTGTGGTCCG-TGAAACTGACGTCATCC--GA---GTGCACTTACTATA---------TTTT---GTGTACACATAGTC-------------------------ACAATCCGAATCCGA------------ATCGG------------GATCG---------GGCTGTTGCCAATGGTGCCATGT--------------------TGTCTTATCAATCCCC-----T--G-CCT-----------TTGCCTT--TTTGCAGCTCTTCGAGGGAATGAAGGCGTATCGCGGCGTCGACGGGAAGATCCGCATSizeHit CountTotal NormTotal
No Reads
droKik1
AGAACCTGGTGATGCACCCGGCCGCCAAGGTGCTGCATTACGCTGTCGAGGTGAGC---ATTACTTCTGGT---GTATTCCCCACTATATTCACGACTGGTAC-----------CAATATCGAATGATGTT----------------------------------------------------------------------------------------------------------GTC--------------------GAGAACTCATGGAACGTGTGTTTACATACGTGACTCTCGAAC-----------------------CAGTCGCTTCTTCCCGTAAACCGTAA-------------TCCA-TAA-TC-CGTCGGCCATAATCTCGCTGTCAACAACAACGCGTCGCACGTGTGGCTTA-TGA-ACTGACGTCATGC--GGTTTAT--ATATAGTATA---------T--A---G----TATATTGTATG-----GG---------------------CAGAATCCGA------------ATCAA------------GATCACAGTCATCCGACTGTTGTCAATGGTGCCAAGT--------------------AGTCTTATCACTCATCCAA-AT--G-CCATTTCCAATCT--GATTCC--ATTGCAGCTCTTCGAGGGCATGAAGGCGTACCGCGGCGTCGACGGCAAGATTCGAATSizeHit CountTotal NormTotal
No Reads
droAna3
AGAATCTAGTCATGCATCCGGCCGCCAAAGTCCTTCACTACGCCGTAGAGGTAGGT--GT-----------------------------------------TCCAAG-------------CCAACA-------------------------------------------------------------------------------------------------------------------------------------------------------CTA-C----TAGGTTGCTAGG---CG-ATTGTAGT-------------------------CCAGTAATCC--------------------AGTAATCC--------GGTAATCT--CTGCCAGCAA------GCGGCACGTGTGGTCTG-G---GCTGACGTCA--------------------------------------------------------------------------------------GAAGGCGA-------------TCGT------A-----GT------------TGCCATCGGCAGTGGCTGGATGATAATCCTATCGGTGATCTGATCTCTAATCCGCAT--------CTC-CCA----------TCGTTCCA--ATTGCAGCTCTTCGAGGGCATGAAGGCGTACAGGGGCGTCGACGGCAAGATCCGCATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................CGCCAAAGTCCTTCACTACGCCGTAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-CCA----------TCGTTCCA--ATTGCAGCT................................................2111.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATGAAGGCGTACAGG.......................1911.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAGGGGCGTCGACGGCA..........2011.001100000
......TAGTCATGCATCCGGCCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------CTC-CCA----------TCGTTCCA--ATTGCAG..................................................2211.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCATGAAGGCGTACA.........................1811.001100000
droBip1
AGAATCTAGTCATGCATCCGGCCGCCAAAGTCCTCCACTACGCCGTAGAGGTAGGT--TT------------------------------CCACGGTTGTTTCCAAG-------------CAATCGGTGTT----------------------------------------------------------------------------------------------------------GCTAGGGGAGGCAATGCCTT-----CCC--C-----GCGAAA--------TCGTGACTCTTGACT-----------------------CC--------GGCTCGTGCCTGCA--CTTCCAGCCGTAGTCCGGTAA-TC-C------GTCGATCT--TTACAAACAA------GTGGCACGTGTGGACTGCTGGGGCTGACGTCA--------------------------------------------------------------------------------------GAACC-AG------------ATCGT------------AGT-----------TGCCATCGGCAGTGGCCTGATGATAATCCAATCAGTGATCTGATCTCTAATCCGTAC--------CTC-CCA-------TCG--GCTTTA--ATTGCAGCTCTTCGAGGGCATGAAGGCATATAGGGGCGTCGATGGCAAGATCCGCATSizeHit CountTotal NormTotal
No Reads
dp5
G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGTTGCCAAAGG-------G--------------------TGTCTTATCAGGCGACTGA---CTGATCG----------ATCGATTC--GTTGCAGCTCTTCGAGGGCATGAAGGCGTACCGGGGGGTCGATGGAAAGATCCGCATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGCGACTGA---CTGATCG----------...................................................................1912.0020200000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCG----------ATCGATTC--GTTGCAG..................................................1911.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTACCGGGGGGTCGATGGAAA.........2311.0010000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGGGCATGAAGGCGTACCGGGG.....................2511.0010000000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCATGAAGGCGTACCGGGGG....................2311.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---CTGATCG----------ATCGATTC--GTT......................................................1911.0010000001000
droPer2
G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGTTGCCAA-------ATGG--------------------TGTCTTATCAGGCGACTGA---CTGATCG----------ATCGATTC--GTTGCAGCTCTTCGAGGGCATGAAGGCGTACCGGGGGGTCGATGGAAAGATCCGCATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC----------TCCGTTTT--CTTATAGCTATTCGAGGGCATGAAGGCTTATCGCGGTGTTGATGGTAAAATTCGGATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCGGTGTTGATGGTAA.........1911.00100001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTATCGCGGTGTTGATGGTAAAAT......2711.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGAAGGCTTATCGCGGTGTTGAT..............2711.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCGGTGTTGATGGTAAAATTCGG..2711.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGGCTTATCGCGGTGTTGATG.............2511.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGAAGGCTTATCGCGGT....................2111.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGGCTTATCGCGGTGTT.................2111.00100010
droVir3
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-CCG----------TCTC-ATC--GTTGCAGCTCTTTGAGGGCATGAAGGCGTACCGCGGCATCGATGGCAAGATTCGCATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCGCGGCATCGATGGCAAG........2211.001000000000000000010000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTTGAGGGCATGAAGGC..............................2111.001000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGATGGCAAGATTCGC..1811.001000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCGCGGCATCGATGG............1811.001000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCGCGGCATCGATGGCAA.........2111.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGCAGCTCTTTGAGGGCATGAAGGCCTACCGCGGCGTGGACGGCAAGATACGCATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAGGCCTACCGCGGCGTG.................2211.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCGCGGCGTGGACGG............1811.001100000
droGri2
TT-----G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC--GTTGCAGCTCTTTGAAGGCATGAAAGCGTATCGTGGAGTCGATGGCAAAATTCGCATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGTATCGTGGAGTCGATG.............2111.00101
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTATCGTGGAGTCGATG.............2011.00101

Generated: 05/19/2015 at 04:59 PM