ID:

dsi_5598

 Coordinate:

2r:5880047-5880196 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-29.6 -29.2 -29.1

Flybase annnotation

exon [2r_5879893_5880046_-]; CDS [2r_5879893_5880046_-]; intron [2r_5880047_5882150_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCCTGGGCTTTTTGGTTTCGGAGTCAACAACTGATATACCCGTAGACGTACAGTTGCCTAGGTGAAGAGCAATGCACACAATATGACGCATTCGCCGGCCCTTTAGTGCCAGTATCCATAATCATAATCGTGCCAGCTCCAAGGCTGCAATGTCTAGACATGTTTATCATTGACGAGCGTGATTCCTTCTCCACTTTCAGTTAACGATGGCCGGACAGCTACGGTGCCGCAATACCGGGGACTGAGCAGC
**************************************************..........((.((((.(((((((............))))).)).(((........))).........((((((..((((..(((((....)))))(((((..((((....)))).)))))))))..)))))).)))).))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR618934
dsim w501 ovaries
 O002
Head
.........................................................................................................................................................................................................TAACGATGGCCGGACAGCTACGGTGC....................... 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CAGTTAACGATGGCCGGAC.................................. 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................CTGCAATGTCTAGACATG........................................................................................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................TCAACCGGTAGACGTACAGTT................................................................................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................ACAGTTGCCTAGGTGCAGA...................................................................................................................................................................................... 19 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................CGCAGTTAACGATGGCCGGAC.................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CGCAGTTAACGATGGCCGGA................................... 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................TTAACGATGGCCGGACAGCTACG........................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................GCTGCAATGTCTAGACATG........................................................................................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CCGGACAGCTACGGTGCCGCAATACCGG............ 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................TACGGTGCCGCAATACCGGGGACTGAGC... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................CGCAATGCCGGGGACTGAGC... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....GGGCTTTTTGGTTTCGGAGTC................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AACGATGGCCGGACAGCTACGGTGC....................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TTCGCAGTTAACGATGGCCGGACAGCTAC............................ 29 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CGCAATACCGGGGACTGAGC... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GATAACCAGGGCCGGACAGCT.............................. 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................ATAGGCCCGTAGACGTA........................................................................................................................................................................................................ 17 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................AGTTAAGGTGCCGGAATAC............... 19 3 17 0.29 5 0 0 0 0 0 0 0 0 0 4 0 1
.................................................................................................................................................................................................................................GCCGAAATAGCGGGGAC........ 17 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................CGAGCGTGATTGTTTTTCC.......................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TCTAGACATGACTATGATT............................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................ATACCGCGGACTGACC... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGGACCCGAAAAACCAAAGCCTCAGTTGTTGACTATATGGGCATCTGCATGTCAACGGATCCACTTCTCGTTACGTGTGTTATACTGCGTAAGCGGCCGGGAAATCACGGTCATAGGTATTAGTATTAGCACGGTCGAGGTTCCGACGTTACAGATCTGTACAAATAGTAACTGCTCGCACTAAGGAAGAGGTGAAAGTCAATTGCTACCGGCCTGTCGATGCCACGGCGTTATGGCCCCTGACTCGTCG
**************************************************..........((.((((.(((((((............))))).)).(((........))).........((((((..((((..(((((....)))))(((((..((((....)))).)))))))))..)))))).)))).))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR618934
dsim w501 ovaries
 M053
female body
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M023
head
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR902008
ovaries
 SRR1275483
Male prepupae		 SRR1275487
Male larvae		 SRR553488
RT_0-2 hours eggs
.........................................................................................................................................................................................GCAGAGGTGTAAGTCAAT............................................... 18 2 3 2.00 6 4 0 0 0 0 1 1 0 0 0 0 0 0
.........................................................GATCCAATTCTAGTTACGT.............................................................................................................................................................................. 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GGCAGAGGTGTAAGTCAAT............................................... 19 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GCAGAGGTGTAAGTCAATG.............................................. 19 3 20 0.90 18 6 0 0 6 0 4 2 0 0 0 0 0 0
...........................................................................................................................................................................................AGAGGTGAAAGTCAA................................................ 15 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................CCTCAGTTGTTGACCAAA..................................................................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AGAGGTGTAAGTCAAT............................................... 16 1 7 0.29 2 0 0 0 0 1 0 0 1 0 0 0 0 0
.......................................................AGGATCAACTTCTCGTTA................................................................................................................................................................................. 18 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGCAGAGGTGTAAGTCAAT............................................... 19 3 20 0.15 3 1 0 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GCAGAGGTGTAAGTCAA................................................ 17 2 20 0.15 3 0 0 0 0 1 0 0 0 0 0 1 1 0
...............................................................................................................................................................................................................ACCGTTCTGTCGATGCCACC....................... 20 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GGCAGAGGTGTAAGTCAA................................................ 18 2 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............................TGCACTATATCGGCATCTG........................................................................................................................................................................................................... 19 3 10 0.10 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................GTTATGGCCCCTGGCG..... 16 2 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TAAGGGCCAGGTGAAAGTCAA................................................ 21 3 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................GGGAAGAGGTGAATCTCAA................................................ 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................AGCTGCCGGGAAATCC............................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................................CTATGGGCCTGTCGAT............................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0

Generated: 04/24/2015 at 01:48 AM