ID:

dsi_5593

Coordinate:

2r:5280736-5280828 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AAGGAGAAGTGCCTGCAGGCGGGCGAGAAGTGTCAGGCCATCTCGTTCGGGTGAGTCGTCTTCCACCTGTCACCCCTTGATTGCCCAATTTCCATCTTATGTATATATGTGTTTTCCTTCTCTTTTTTTTCGGAATTTTGCAGTGTTCATCGACGCGGAAACGGCACTTGTCAGTTGTCATCGGAGCAGTACG ************************************************................(((....................((((......................................)))).....)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M023 head	SRR553488 RT_0-2 hours eggs	M024 male body
AAGGAGAAGTGCCTGCAGGCGGGC.........................................................................................................................................................................	24	0	1	1.00	1	0	1	0	0
.............................GTGTCAGGCCATCTCGTTC.................................................................................................................................................	19	0	1	1.00	1	1	0	0	0
...GAGAAGTGCCTGAAGG..............................................................................................................................................................................	16	1	8	0.13	1	0	0	1	0
.............................................................................................................................................................GCAACGGCACGTGTCAGTC.................	19	3	13	0.08	1	1	0	0	0
.................................................................................................................................ACGGAATTTTGAAGGGTTC.............................................	19	3	20	0.05	1	0	0	0	1
............................................GTTCTGGTGAGTCGTCC....................................................................................................................................	17	2	20	0.05	1	0	0	1	0

Anti-sense strand reads

TTCCTCTTCACGGACGTCCGCCCGCTCTTCACAGTCCGGTAGAGCAAGCCCACTCAGCAGAAGGTGGACAGTGGGGAACTAACGGGTTAAAGGTAGAATACATATATACACAAAAGGAAGAGAAAAAAAAGCCTTAAAACGTCACAAGTAGCTGCGCCTTTGCCGTGAACAGTCAACAGTAGCCTCGTCATGC ************************************************................(((....................((((......................................)))).....)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis
....................................................CTCAGCAGAAGGTGG..............................................................................................................................	15	0	1	1.00	1	1	0	0	0	0
..................................................................................................................AGGAAGAGAAAAAAAA...............................................................	16	0	6	0.33	2	0	0	1	1	0
......................................................................................TTAAAGGTAGAATACAT..........................................................................................	17	0	4	0.25	1	1	0	0	0	0
..........................................................................................................................AAAAAAAAGCTTTTAAACGTC..................................................	21	2	5	0.20	1	0	1	0	0	0
...........................................................................................................................AAAAAAAGCTTTTAAACGTC..................................................	20	2	7	0.14	1	0	1	0	0	0
...............................................................................................................AAAAGGAAGAGAAAAAA.................................................................	17	0	7	0.14	1	0	1	0	0	0
...............................................................................................................AAAAGGAAGAGAAAAA..................................................................	16	0	13	0.08	1	1	0	0	0	0
..............................................................................................................................AAAAGCCTTAGAACGTGC.................................................	18	3	20	0.05	1	1	0	0	0	0
....................................................................................................................AAAGAAAAAAAAAAGCCTTA.........................................................	20	2	20	0.05	1	0	0	0	0	1

Generated: 04/23/2015 at 12:04 PM