ID:

dsi_5588

 Coordinate:

3l:23531137-23531286 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.3 -11.3 -11.3

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron+
mature
  1. 2l:17520398-17520421 +
  2. 2l:18632605-18632628 +
  3. 2l:21339945-21339968 +
  4. 2l:21345722-21345745 +
  5. 2r:2262120-2262143 +
  6. 2r:2504773-2504796 +
  7. dsi_2901  2r:3183736-3183759 +
  8. 3l:12690530-12690553 +
  9. 3l:19199422-19199445 +
  10. 3l:21573589-21573612 +
  11. 3l:22234633-22234656 +
  12. 3l:22484292-22484315 +
  13. dsi_5588  3l:23531180-23531203 +
  14. 3l:23711929-23711952 +
  15. 3r:167405-167428 +
  16. 3r:938173-938196 +
  17. 4:978886-978909 +
  18. x:17406895-17406918 +
  19. dsi_27652  x:19732939-19732962 +
  20. x:20545086-20545109 +
  21. 2l:16135723-16135746 +
  22. dsi_6722  2r:1194648-1194671 +
  23. 2r:1351513-1351536 +
  24. 2r:2586197-2586220 +
  25. 3l:14803438-14803461 +
  26. 3l:17623570-17623593 +
  27. dsi_31346  3l:17823407-17823430 +
  28. dsi_22826  3l:22501218-22501241 +
  29. 3l:22782929-22782952 +
  30. 3r:7716-7739 +
  31. 3r:1681092-1681115 +
  32. dsi_31968  x:16629409-16629432 +
  33. x:19129773-19129796 +
  34. x:19183095-19183118 +
  35. x:19886314-19886337 +
  36. node_22823:2747-2770 +
  37. node_62956:1126-1149 +
  38. node_52566:7390-7413 +
  39. node_7842:3218-3241 +
  40. 2l:6993622-6993645 +
  41. 2l:21418754-21418777 +
  42. 2r:816577-816600 +
  43. 2r:832352-832375 +
  44. 2r:2561866-2561889 +
  45. 2r:5073094-5073117 +
  46. 3l:22414394-22414417 +
  47. 3l:22448725-22448748 +
  48. 3l:22665675-22665698 +
  49. 3l:22730929-22730952 +
  50. 3l:22869428-22869451 +
  51. 3l:22885203-22885226 +
  52. 3l:22926265-22926288 +
  53. 3l:22942040-22942063 +
  54. 3l:22986293-22986316 +
  55. 3l:23002068-23002091 +
  56. 3r:592177-592200 +
  57. 4:805176-805199 +
  58. x:20788573-20788596 +
  59. node_52501:162-185 +
  60. 2l:22612868-22612891 +
  61. 2l:22733796-22733819 +
  62. 3l:23152308-23152331 +
  63. x:18875669-18875692 +
  64. x:19888186-19888209 +
  65. node_9712:2415-2438 +
  66. 2l:18580204-18580227 -
  67. 2l:22605125-22605148 -
  68. 2l:22729572-22729595 -
  69. dsi_27449  2l:23528740-23528763 -
  70. 2r:240710-240733 -
  71. 2r:323370-323393 -
  72. 2r:1558259-1558282 -
  73. 3l:19646551-19646574 -
  74. 3l:22135090-22135113 -
  75. 3l:23557581-23557604 -
  76. 3r:79972-79995 -
  77. 3r:293465-293488 -
  78. 3r:17699259-17699282 -
  79. 4:30595-30618 -
  80. 4:302727-302750 -
  81. 4:651189-651212 -
  82. x:18645967-18645990 -
  83. x:19481455-19481478 -
  84. node_22030:7652-7675 -
  85. node_39799:9498-9521 -
star
  1. dsi_5588  3l:23531211-23531235 +
  2. 3l:23557549-23557573 -

Sense Strand Reads

AACAACGGTCACACCCACACTTCTAAACAATATTTATTTATTTTTTCATTCTATTTCATTAAAAATATTGAAATTTCGCGTTCGCATTTCCAGTAGCTGAGTAACGGGTATCTGATAGTCTGGAAACTCGACTATAGTATTCCCACTTGTTTTAATATGCTTCCATAAAAAACATAACCATTGATAATTTTTTTTTCAAGGTGGTCCCCATTGGTTGGAAAATTAAAATACTTGGCGGAAGTTAACCTAA
*********************************************************************************************.....((((...(((.(((((.(((((.((...)).)))))))).)).))))))).***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 M053
female body
 GSM343915
embryo
.............................................................................................TAGCTGAGTAACGGGTATCTGATA..................................................................................................................................... 24 0 20 8.10 162 0 160 0 0 0 1 0 0 0 1
..................................................................................................................................................................................................................TTGGTTGGAAAATTAAAATACTTGGC.............. 26 0 2 3.00 6 4 0 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................TTGGAAAATTAAAATACTTGGCGGA........... 25 0 2 2.50 5 3 0 0 1 0 1 0 0 0 0
.......................................................................................................................................................................................................................TGGAAAATTAAAATACTTGGCGGAAGT........ 27 0 2 2.00 4 0 0 2 0 0 0 1 1 0 0
.................................................................................................TGAGTAACGGGTATCTGATAGTCT................................................................................................................................. 24 0 8 1.75 14 4 0 0 2 2 3 1 2 0 0
...................................................................................................................................................................................................................TGGTTGGAAAATTAAAATACTTGGCGGA........... 28 0 2 1.50 3 2 0 1 0 0 0 0 0 0 0
............................................................................................................................AACTCGACTATAGTATTCCCACTTG..................................................................................................... 25 0 2 1.50 3 0 0 1 0 0 2 0 0 0 0
.................................................................................................TGAGTAACGGGTATCTGATAGTC.................................................................................................................................. 23 0 20 1.45 29 0 0 0 29 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGGAAAATTAAAATACTTGGCGGA........... 24 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TTTTCAAGGTGGTCCCCATTGGTTGGA............................... 27 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGGTTGGAAAATTAAAATACTTGGC.............. 25 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................TGAGTAACGGGTATCTGATAGTCTGGA.............................................................................................................................. 27 0 2 1.00 2 0 0 0 1 0 1 0 0 0 0
............................................................................................................................AACTCGACTATAGTATTCCCACTTGT.................................................................................................... 26 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGTCCCCATTGGTTGGAAAATTAAAA...................... 27 0 2 1.00 2 1 0 1 0 0 0 0 0 0 0
.................................................................................................TGAGTAACGGGTATCTGATAGT................................................................................................................................... 22 0 20 0.75 15 0 0 0 15 0 0 0 0 0 0
.................................................................................................TGAGTAACGGGTATCT......................................................................................................................................... 16 0 20 0.70 14 0 0 0 0 14 0 0 0 0 0
.......................................................................................................ACGGGTATCTGATAGTCTGGA.............................................................................................................................. 21 0 3 0.67 2 0 0 0 0 2 0 0 0 0 0
.............................................................................................TAGCTGAGTAACGGGTATCTGATAGT................................................................................................................................... 26 0 20 0.65 13 0 0 0 13 0 0 0 0 0 0
.............................................................................................................................ACTCGACTATAGTATTCCCACTTGT.................................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTTTTCAAGGTGGTCCCCATTGGTTGGA............................... 28 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................TGAGTAACTGGTATCTGATAGTCTGGA.............................................................................................................................. 27 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................AGCGAGGTGGTCCCCATTGGTTGGAA.............................. 26 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0
....................................................................TGAAATTTCGCGTTCGCATTTCCAG............................................................................................................................................................. 25 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TAAAATACTTGGCGGAAGTTAACCTAA 27 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ATTGGTTGGAAAATTAAAAT..................... 20 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TTAAAATACTTGGCGGAAGTTAACCTAA 28 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TAAAATACTTGGCGGAAGTTAACCTA. 26 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TTGGAAAATTAAAATACTT................. 19 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0
..................................................................................CGCATTTCCAGTAGCTGAGTAACGGGT............................................................................................................................................. 27 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................TTGGTTGGAAAATTAAAATACTTGGCGGAA.......... 30 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................TTTTTTTCAAGGTGGTCCCCATTGGT................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................CTAATTTTTTATTCAATGTGG.............................................. 21 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0
...................................................................................GCATTTCCAGTAGCTGAGTAACGGT.............................................................................................................................................. 25 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................TGAGTAACGGGTATCTGATAATCTGGA.............................................................................................................................. 27 1 3 0.33 1 0 0 0 0 0 0 0 0 1 0
.....................................................................................................TAACGGGTATCTGATAGTCTGGAAACT.......................................................................................................................... 27 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0
...................................................................................GCATTTCCAGTAGCTGAGTAACGG............................................................................................................................................... 24 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................AGTAACGGGTATCTGATAGTCTGGAA............................................................................................................................. 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................TGAGTAACGGGTATCTGATAGTCTG................................................................................................................................ 25 0 7 0.29 2 0 0 0 2 0 0 0 0 0 0
.................................................................................................TGAGTAACGGGTATCTGATAGTCTGG............................................................................................................................... 26 0 7 0.29 2 0 0 0 0 1 1 0 0 0 0
................................................TTCTATTTCGTTAAAAA......................................................................................................................................................................................... 17 1 8 0.25 2 0 0 1 0 0 0 0 1 0 0
.....................................................................................................................GTCTGGAAACTCGACTAT................................................................................................................... 18 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0
....................................................................TGAAATTTCGCGTTCGC..................................................................................................................................................................... 17 0 20 0.25 5 0 0 0 0 5 0 0 0 0 0
............................................................................................GTAGCTGAGTAACGGGTATCTGATA..................................................................................................................................... 25 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................CAGTAGCTGAGTAACGGGTATCTGAT...................................................................................................................................... 26 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................TGAGTAACGGGTATCTGATAGTCTC................................................................................................................................ 25 1 15 0.20 3 0 0 1 2 0 0 0 0 0 0
.................................................................................................................GATAGTCTGGAAACTC......................................................................................................................... 16 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................TGAGTAACGGGTATCTGATAGACT................................................................................................................................. 24 1 11 0.18 2 2 0 0 0 0 0 0 0 0 0
.......................................................................................................ACGGGTATCTGATAGTCTG................................................................................................................................ 19 0 10 0.10 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................TGAGTAACGGGTATCTGATAGTCTT................................................................................................................................ 25 1 20 0.10 2 0 0 0 2 0 0 0 0 0 0
..............................................................................................AGCTGAGTAACGGGTATCTGATAGTC.................................................................................................................................. 26 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0
.............................................................................................TAGCTGAGTAACGGGTATCTGATAG.................................................................................................................................... 25 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
.................................................................................................TGAGTAACGGGTATCTGATAATAT................................................................................................................................. 24 2 20 0.10 2 0 0 0 2 0 0 0 0 0 0
....................................................................TGAAATTTCGCGTTCGCATT.................................................................................................................................................................. 20 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0
..............................................................................................AGCTGAGTAACGGGTATCTGATAGT................................................................................................................................... 25 0 20 0.10 2 0 0 0 0 0 2 0 0 0 0
.................................................................................................TGAGTAACGGGTATCTGATAGTCTGGT.............................................................................................................................. 27 1 12 0.08 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................TGAGTAACGGGTATCTGTTAGTCT................................................................................................................................. 24 1 12 0.08 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................TGAGTAACGGGTATCTGATAGCCT................................................................................................................................. 24 1 16 0.06 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................TGAGTAACGGGTATCTGATAGTAT................................................................................................................................. 24 1 16 0.06 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................TGAGTAACGGGTATCTGATAATCT................................................................................................................................. 24 1 17 0.06 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................TGAGTAACGGGTATCTGATAGTTT................................................................................................................................. 24 1 17 0.06 1 0 0 0 1 0 0 0 0 0 0
.....................................................................GAAATTTCGCGTTCGC..................................................................................................................................................................... 16 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................TAACGGGTATCTGATA..................................................................................................................................... 16 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................TGAGTAACGGGTATCTGATAGTATT................................................................................................................................ 25 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................TGAGTAACGGGTATCTGATAGTATC................................................................................................................................ 25 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................TAGCTGAGTAACGGGTATCTGATAGTC.................................................................................................................................. 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................TGAGCAACGGGTATCTGATAGTTT................................................................................................................................. 24 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...................................................................................GCATTTCCAATAGCTGAGTAACGG............................................................................................................................................... 24 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................TTAACGGGTATGTGATAGTCTG................................................................................................................................ 22 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TTGTTGCCAGTGTGGGTGTGAAGATTTGTTATAAATAAATAAAAAAGTAAGATAAAGTAATTTTTATAACTTTAAAGCGCAAGCGTAAAGGTCATCGACTCATTGCCCATAGACTATCAGACCTTTGAGCTGATATCATAAGGGTGAACAAAATTATACGAAGGTATTTTTTGTATTGGTAACTATTAAAAAAAAAGTTCCACCAGGGGTAACCAACCTTTTAATTTTATGAACCGCCTTCAATTGGATT
*****************************************************************************************************.....((((...(((.(((((.(((((.((...)).)))))))).)).))))))).********************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 O001
Testis
 M053
female body
 SRR902009
testis
.............................................................................CGCAAGCGTAAAGGTCATCGACTCAT................................................................................................................................................... 26 0 2 3.00 6 5 1 0 0 0 0 0 0 0
..............................................................................GCAAGCGTAAAGGTCATCGACTCAT................................................................................................................................................... 25 0 2 2.00 4 3 1 0 0 0 0 0 0 0
................................................AAGATAAAGTAATTTTTACAACTTT................................................................................................................................................................................. 25 1 2 1.50 3 0 2 0 1 0 0 0 0 0
.......................................................................TTAAAGCGCAAGCGTAAAGGTCAT........................................................................................................................................................... 24 0 2 1.50 3 1 0 1 1 0 0 0 0 0
.............................................................................................................................................................................................AAAAAAAGTTCCACCAGGGGTAACCAAC................................. 28 0 2 1.00 2 0 2 0 0 0 0 0 0 0
...............................................................................CAAGCGTAAAGGTCATCGACTCAT................................................................................................................................................... 24 0 2 1.00 2 1 0 0 0 0 0 1 0 0
......................................................................TTTAAAGCGCAAGCGTAAAGGTCAT........................................................................................................................................................... 25 0 2 1.00 2 2 0 0 0 0 0 0 0 0
................................................................................................................................................................AAGGTATTTTTTGTATTGGTAACT.................................................................. 24 0 2 0.50 1 0 0 0 1 0 0 0 0 0
.....................................................AAAGTAATTTTTACAACTTTAAAGCGC.......................................................................................................................................................................... 27 1 2 0.50 1 0 0 1 0 0 0 0 0 0
........AGTGTGGGTGTGAAGATTTGTTAT.......................................................................................................................................................................................................................... 24 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.............GGGTGTGAAGATTTGTTATAAATAAAT.................................................................................................................................................................................................................. 27 0 2 0.50 1 0 1 0 0 0 0 0 0 0
...........................................................................AGCGCAAGCGTAAAGGTCATCGACTCAT................................................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................AGGTATTTTTTGTATTGGTAACATTT............................................................... 26 2 2 0.50 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................TGAGCTGATATCATAAGGGTGAACAA................................................................................................... 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0
.................................................................................AGCGTAAAGGTCATCGACTCATTGCC............................................................................................................................................... 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................AGCTGATATCATAAGGGTGAACAAAACT............................................................................................... 28 1 2 0.50 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................AGGGTGAACAAAATTATACGAAGGTA.................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................................AAGCGCAAGCGTAAAGGTCATCGACTCAT................................................................................................................................................... 29 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................AAGGGTGAACAAAACTTTACGAAGGTAT................................................................................... 28 2 2 0.50 1 1 0 0 0 0 0 0 0 0
............................................................................GCGCAAGCGTAAAGGTCATCGACTCAT................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...................................................................AACTTTAAAGCGCAAGCGT.................................................................................................................................................................... 19 0 3 0.33 1 0 0 0 0 1 0 0 0 0
.......................................................................................AAGGTCATCGACTCATTGCCCATAGACT....................................................................................................................................... 28 0 3 0.33 1 1 0 0 0 0 0 0 0 0
........................................................................................AGGTCATCGACTCATTGCCCATAGACT....................................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0 0 0 0 0
..................................................................................................CTCATTGCCCATAGACTATCAGACCT.............................................................................................................................. 26 0 3 0.33 1 0 0 0 0 0 1 0 0 0
.......................................................................TTAAAGCGCAAGCATAAAGGTCATCGAC....................................................................................................................................................... 28 1 3 0.33 1 1 0 0 0 0 0 0 0 0
....................................................................................GTAAAGGTCATCGACTCATTGCC............................................................................................................................................... 23 0 3 0.33 1 0 0 0 0 0 1 0 0 0
...................................................................AACTTTAAAGCGCAAGCG..................................................................................................................................................................... 18 0 4 0.25 1 0 0 0 0 1 0 0 0 0
........................................................................................AGGTCATCGACTCATAGCCCATAGACT....................................................................................................................................... 27 1 4 0.25 1 1 0 0 0 0 0 0 0 0
..................................................................................GCGTGAAGGTCATCGACTCATTGCC............................................................................................................................................... 25 1 5 0.20 1 0 0 0 0 1 0 0 0 0
.................................................................................AGCATAAAGGTCATCGACTCA.................................................................................................................................................... 21 1 6 0.17 1 0 0 0 0 1 0 0 0 0
..............................................................................................TCGACTCATTGCCCATAGACTAT..................................................................................................................................... 23 0 20 0.15 3 0 0 3 0 0 0 0 0 0
.............................................................................................................................................................................................AAAAAAAGTTCCATC.............................................. 15 1 12 0.08 1 0 0 1 0 0 0 0 0 0
.........................................AAAAAGTAGGATAAAGCAAGT............................................................................................................................................................................................ 21 3 12 0.08 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CCAGCGGTAACCACCCT............................... 17 2 17 0.06 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................GTTTTTTGTATTGGTGCCTA................................................................. 20 3 18 0.06 1 0 0 0 0 0 0 0 1 0
....................................AAAAAAAAAGGTAAGATAAGGTA............................................................................................................................................................................................... 23 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:23531087-23531336 + dsi_5588 AACAACGGTCACACCCACACTTCTAAACAATATTTATTTATTTTTTCATTCTA----TTTCATT---------------------------------------------------------------------------------------------------------------------------AAAAATATTG----------AAATTTCGCGTTCGCATTTCCA---------GTAGCTGAGTAACGGGTATCTGATAGTCTGGAA----ACTCGACTATAGTATTC-CCAC----------------------------------------------------------TTGTTTTAATA----------TGCTTCCATAAAAA------------ACA--------------------------------TAACCATTGA------TAATTT-TT------TT--------------------------------TTCAAGGTGGTCCCCATTGG-TTG-----------GAA-AATTAAAATACTT---GGC--GGA-------------AGTTAACCTAA
droSec2 scaffold_5:109246-109502 - AGCAACGGTCACACCCACACTTCTAAACAATATTTATATATTTTTTCAGTCTA----TTTCATT---------------------------------------------------------------------------------------------------------------------------AAAAATGTTG----------AAATTTCGCGTTCGTATTTCCA---------GTAGTTGAGTAACGGGTATCCGATAGTCTGGAA----ACTCGACTATAGTATTC-CCAC----------------------------------------------------------TTGTTTTGAAA----------TGCTTCCATAAAAA------------ACA--------------------------------TAACCATTGAACAGAATAATTTTTT------TT--------------------------------TTCAAGGTGGTCCCCATTGG-TTG-----------GAA-AATTAAAATACTT---GGC--GGA-------------AGTTAACCTAA
dm3 chr3L:24393724-24394004 + AAA-ACAGTCACA----CAGTTTTGAACAATATTTATTTATTTTCTCATTTTA----TTTCCCA---------------ATATCTATCGATATCCCAG-----------------------------------------------------------------------------------------AAAAATTTCG----------AAATTTAGCGTCTGCATTTCTA---------GTAGCTGAGTAACGGGTATCTGATAGTCTGGGA----AGTCGACTATAGTATTT-CCAC----------------------------------------------------------TTGTTTTAAATGTGAATTAAGTGCTTCCATACAAA------------ACA--------------------------------TAACTATTAAACGGAATAATTTTTT------TT--------------------------------TTCAAGGTGGTCCCCATTTA-CCG-----------GAA-AATTAAAATACTT---GGC--GGA-------------AGTAAACCTAA
droEre2 scaffold_4929:16396802-16397010 - CACGCCCACAAACC----------AAACATTTT-TTCCCAATTT---------------------------------------CTACAGATATTCCA------------------------------------------------------------------------------------------AAAAATGTTG----------AAATTTCTCGTTTGCACTTAAA---------CTAGCTGAGTAACGGGTATCTGATAGTCGGGGA----GCTCGACTATAGCATTC-TATC----------------------------------------------------------TTGTTTTAATTGTA---------ATTTCA-ACGT---------------------------------------AACG-------------------------------------------------------------------------AAGGTGGTT------GGATTGG----------AAA-AACTAATATATTT---GAAAGGGA-------------AG-C--AACAA
droYak3 2R:1195383-1195679 - CAAAACTACCACTTCCAAACTTTTAAAACAT----------TTAAACAA----TTTATTTATTTAAGGTTGTTAATCCCTGTTTTATCAATATGCCTG-----------------------------------------------------------------------------------------GAAATTTTTA----------AAATTTCCCATTCGCACTTCCA---------TTAGCTGAGTAACGGGTACT---GAGTCGGGGA----ACTCGACTTTAGCATTC-TCTCTTATTTCCAATATAATTGCTGAAAGGTTTTTCAGGCATGCCCAAGCTTGCGTCCTTTTTTGTTAAA--------------------------TA------TTGAGT----------------------TATAACAAATGATATTAAT-----------------------------------------------------------------------------A-TTA-----------AGA-AATCAAAAGACTT---AGA--GAA-------------ATTCTACTTAA
droEug1 scf7180000409230:321279-321470 + TTCCACTAGCAAAATTAATATTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------AAAT--------T-------GT---------GTAAAACAGTAACGGGTATCTTATAGTCGCGGC----ACTCGACTATAGCGTTT-CCTC----------------------------------------------------------TTGTTTTATTACTA---------ATTTCGAA--AA-ATCAAA-----CCTTAACACTTACAAAATAAATCTTTT-----------------T------CAG--G-GA------GT--------------------------------TT----AT-------------TAA-----------AAT-TCTTAATCTAAAT---ATT--AAA-------------AATTGACATAA
droBia1 scf7180000301407:3463-3690 - TAACACTGTCTGCCG--CCC------------------------------------------------------------------------------AAAATATCCAGTAGGTGGCACTTTAGAATATTTCTTTGCTGTTTATATATTTCCATT-----------------------------------------T----------TTATTT--------TTCTCCCT---------CAAGCTAAGTAACGGGTATCTGATAGTCGAGGT----ACTCGACTATAACGTTC-TTCC----------------------------------------------------------TTGTTGTTTTTTAA-----ATTGCT-----AA--TT------TTGAAT----------------------TTTTTCG-------------------------------------------------------------------------AAGACG--------TAA-ATA-----------AAA-AATTCAATTTCTTGGTAAA--AAA-------------AATC-GGCTAA
droTak1 scf7180000412299:7072-7276 - AAAAA--GTTATACGCAATC----AAAATTTATATATCTATCTC--------------------------------------------------CCTCGCACTAT-------------------------------------------------------------------------------------------C----------CAGTACAGCGTTCGCACTCCCT---------TTAGCTGAGTGACGGGTATTAGATAGTCGGGAGACCAACCCGACTATAGCGTTC-TCTC----------------------------------------------------------TTGTTTTTAAC----------TCGTTTTAAACAA---TAAAA-----C------------------GATCTC----------TC-------A------CAGCTG-CA------GT--------------------------------TT----GTGATAGCCATGGA-AAG-----------GAA-AA--------------------------------------------TT
droEle1 scf7180000490403:1187-1338 - ATTTT--------------------------------------------------------AAG---------------------------------------------------------------------------------------------------------------------------GGGAATACTT----------AGA--------TTGCACTT-TG---------TTGGCCGAGTAACGGGTATCTTATAGTCGGGAA----TCTCGACTATAGCTTTC-TCTC----------------------------------------------------------TTGTTTTATATTAC---GAGCTGCTGCCAT-------------------------------------------------------------------------------------------------------------------------------------------TAGAAAATATAAAGATGTTTTTTCAAATTC---CAT--------------------TC--GGTTG
droRho1 scf7180000772946:11362-11582 + TATTACCGTTACTCGTGTTG-----------------------------------------------------------------------------------------------------------------------------TGCAAACATTTAGACTTACATATATAATTCTATTTAATACTT---------AATCTTATATTAAG---------------TTGT---------TTAGCTGAGTAACGGGTATCTAATAGTCGAGGC----ACTCGACTATAGCGTTC-TCTC----------------------------------------------------------TTGTTTTGTTTTTC----------ATTGTCTAAAT------------ATA--------------------------------TAGTGGTTTA------TAGT---TT------CC--------------------------------CTGAAGACGGTTGCC----------------------------------------------GAAGTTAAAAATAAACAATAAAATAT
droFic1 scf7180000453830:339359-339450 - T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGGGTATATGGTAGTCATGAA----ACTTGCCTGTAGTGCAC-TGCC----------------------------------------------------------TTGTTTTTTCTATG----------GTAGAAATAAA------------ATT--------------------------------CAGTTGTTTG------A------------------------------------------------------------------------------------------------------TTA-------------------------TTAAG
droKik1 scf7180000302810:190980-191071 + GG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATTTCAACTTCG-GCT----AGCCGAAGTTAGCTTCC-TTTC----------------------------------------------------------TTGTTTTTAAA----------TAATTTAATACAAA------------ATT--------------------------------CAATTATTTT------AAATGT-TT------T-------------------------------------------------------------------------------------------------------------------TTCCA
droAna3 scaffold_12947:221268-221398 + A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTACCTGGTATCACATAGTCGGGAA----ACTCTACTATAGCCGTC-CTTT----------------------------------------------------------CATTTTTAAGTTAG--------------A-A--AG-ACTGAA-----CC---------------------TT----------CC-------A------TGGTTT-CT------AC--------------------------------TTCTGCAC---AACTTTTAT-AAG-----------GAAAATTTATTATATTT---GAT--------------------------TTA
droBip1 scf7180000396730:3001729-3001885 - ATTTTTCCATACTGTTAATG-----------------------------------------------------------------------------------------------------------------------------TTTAAACTTT-----------------------------------------C----------AAGTTTAGTT-------AAACTGTGGTTAGAAGAGATGAGCACCGGGTATAATATAGTCAAGAA----TCTCGACTATAGCCGTCCTTTC----------------------------------------------------------TTGTATTATTTAA----------ATTTAATAA--GT-----------CCA--------------------------------TATACATTGA------TAAA---------------------------------------------------------------------------------TT---------------------------------------------TATT
dp5 2:25153628-25153709 + G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAGTAGCGGGTATTTTGTAGTCGGAAC----CCTCGACTAAGGCATTT-TTTC----------------------------------------------------------TCGTTTGAAAA----------AAATGTTAAAAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACAA
droPer2 scaffold_3:6266852-6266991 - AATGG---TTATACCCGCTG------AGAGGATTTAACCATATACTCGAG---TTTATTTAATT---------------------------------------------------------------------------------------------------------------------------AAAATTCTAA----------AAGTATCACTTTGATATTTTCA---------AAAGCTATGAAACATAAATATTATAGTGG--CA----AGTCC---ACTGCGTAC-TCGC----------------------------------------------------------TTTGTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004909:2543848-2543915 - AAACACGAACATTTTGACATTTCTAAACATTTTTTACTTTTCCTTAAATTGTA----TCCCTCA---------------------------------------------------------------------------------------------------------------------------AAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT
droVir3 scaffold_12855:6642008-6642067 + AGCAT---TCACACACACACACACACATTATATTTATCTTCTTTTTCGTTTTA----CATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAA
droMoj3 scaffold_6496:2475611-2475793 + AAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTG----------AAATATCTA--TTG---CTCC--------------AAGGGTTCAGGGGATCTCGTAGTCGAGCA---GTCTCGACTAGAGCTTTC-TTAC----------------------------------------------------------TTGTTTCTATA----------TCTTTTCATTGAGTA------ACATTTCG--------------------------------TAGCAATTAGATAAGATTTTTTTTT-------------------------------------------------GTATTCTTTGG-ACA-----------GTA-GATTAATGTATTT---TTT--GAG-------------GGCAATCGTGA
droGri2 scaffold_15203:767668-767854 - TTTGT--------------------------------TCGTTTTATTGTCATA----TTTATTG---------------------------------------------------------------------------------------------------------------------------ATAAAAATCG----------AAATTTCGGATTCGTCTATATA---------GAATT-----------------ACACTCTGCG-------------------------------------------------------------------------------------------------------------------------------AAATTCGA--------------------------------TTAAAGTCACTTGAATTTTTTTAATATAATATGTAGAAATGACATGAAAATAATAAATTAATAATGTGCCCATCCTCCAGATTTG-TTG-----------ATA-ACTAAAAAA-----------------------------------AATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AACAACGGTCACACCCACACTTCTAAACAATATTTATTTATTTTTTCATTCTA----TTTCATT---------------------------------------------------------------------------------------------------------------------------AAAAATATTG----------AAATTTCGCGTTCGCATTTCCA---------GTAGCTGAGTAACGGGTATCTGATAGTCTGGAA----ACTCGACTATAGTATTC-CCAC----------------------------------------------------------TTGTTTTAATA----------TGCTTCCATAAAAA------------ACA--------------------------------TAACCATTGA------TAATTT-TT------TT--------------------------------TTCAAGGTGGTCCCCATTGG-TTG-----------GAA-AATTAAAATACTT---GGC--GGA-------------AGTTAACCTAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................TAGCTGAGTAACGGGTATCTGATA......................................................................................................................................................................................................................................................................................................................................24208.101620000160000100100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGG-TTG-----------GAA-AATTAAAATACTT---GGC--...........................2623.00600000041000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-----------GAA-AATTAAAATACTT---GGC--GGA-------------...........2522.50500000030100010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-----------GAA-AATTAAAATACTT---GGC--GGA-------------AGT........2722.00400000002010001000
...................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTCT..................................................................................................................................................................................................................................................................................................................................2481.751400000040322021000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG-TTG-----------GAA-AATTAAAATACTT---GGC--GGA-------------...........2821.50300000021000000000
..............................................................................................................................................................................................................................................................................A----ACTCGACTATAGTATTC-CCAC----------------------------------------------------------TTG.......................................................................................................................................................................................................................................2521.50300000001200000000
...................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTC...................................................................................................................................................................................................................................................................................................................................23201.4529000000000000290000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-----------GAA-AATTAAAATACTT---GGC--GGA-------------...........2421.00200000020000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--------------------------------TTCAAGGTGGTCCCCATTGG-TTG-----------GA..................................................2721.00200000020000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG-TTG-----------GAA-AATTAAAATACTT---GGC--...........................2521.00200000020000000000
...................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTCTGGA...............................................................................................................................................................................................................................................................................................................................2721.00200000000100010000
..............................................................................................................................................................................................................................................................................A----ACTCGACTATAGTATTC-CCAC----------------------------------------------------------TTGT......................................................................................................................................................................................................................................2621.00200000020000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCCCCATTGG-TTG-----------GAA-AATTAAAA........................................2721.00200000011000000000
...................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGT....................................................................................................................................................................................................................................................................................................................................22200.7515000000000000150000
...................................................................................................................................................................................................................................................TGAGTAACGGGTATCT..........................................................................................................................................................................................................................................................................................................................................16200.7014000000000014000000
.........................................................................................................................................................................................................................................................ACGGGTATCTGATAGTCTGGA...............................................................................................................................................................................................................................................................................................................................2130.67200000000002000000
...............................................................................................................................................................................................................................................TAGCTGAGTAACGGGTATCTGATAGT....................................................................................................................................................................................................................................................................................................................................26200.6513000000000000130000
...................................................................................................................................................................................................................................................................................ACTCGACTATAGTATTC-CCAC----------------------------------------------------------TTGT......................................................................................................................................................................................................................................2520.50100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------TT--------------------------------TTCAAGGTGGTCCCCATTGG-TTG-----------GA..................................................2820.50100000001000000000
...................................................................................................................................................................................................TG----------AAATTTCGCGTTCGCATTTCCA---------G..............................................................................................................................................................................................................................................................................................................................................................2520.50100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAATACTT---GGC--GGA-------------AGTTAACCTAA2720.50100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGG-TTG-----------GAA-AATTAAAAT.......................................2020.50100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATACTT---GGC--GGA-------------AGTTAACCTAA2820.50100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAATACTT---GGC--GGA-------------AGTTAACCTA.2620.50100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-----------GAA-AATTAAAATACTT---................................1920.50100000000001000000
...........................................................................................................................................................................................................................CGCATTTCCA---------GTAGCTGAGTAACGGGT..............................................................................................................................................................................................................................................................................................................................................2720.50100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGG-TTG-----------GAA-AATTAAAATACTT---GGC--GGA-------------A..........3020.50100000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TT------TT--------------------------------TTCAAGGTGGTCCCCATTGG-T.................................................................2620.50100000010000000000
............................................................................................................................................................................................................................GCATTTCCA---------GTAGCTGAGTAACGGT...............................................................................................................................................................................................................................................................................................................................................2530.33100000000001000000
.......................................................................................................................................................................................................................................................TAACGGGTATCTGATAGTCTGGAA----ACT.......................................................................................................................................................................................................................................................................................................................2730.33100000000001000000
............................................................................................................................................................................................................................GCATTTCCA---------GTAGCTGAGTAACGG................................................................................................................................................................................................................................................................................................................................................2430.33100000010000000000
.....................................................................................................................................................................................................................................................AGTAACGGGTATCTGATAGTCTGGAA----..........................................................................................................................................................................................................................................................................................................................2630.33100000010000000000
...................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTCTG.................................................................................................................................................................................................................................................................................................................................2570.29200000000000020000
...................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTCTGG................................................................................................................................................................................................................................................................................................................................2670.29200000000101000000
.......................................................................................................................................................................................................................................................................GTCTGGAA----ACTCGACTAT................................................................................................................................................................................................................................................................................................................1840.25100000000001000000
...................................................................................................................................................................................................TG----------AAATTTCGCGTTCGC...............................................................................................................................................................................................................................................................................................................................................................................17200.25500000000005000000
..............................................................................................................................................................................................................................................GTAGCTGAGTAACGGGTATCTGATA......................................................................................................................................................................................................................................................................................................................................2550.20100000000001000000
...................................................................................................................................................................................................................................CA---------GTAGCTGAGTAACGGGTATCTGAT.......................................................................................................................................................................................................................................................................................................................................2650.20100000000001000000
...................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTCTC.................................................................................................................................................................................................................................................................................................................................25150.20300000001000020000
...................................................................................................................................................................................................................................................................GATAGTCTGGAA----ACTC......................................................................................................................................................................................................................................................................................................................1650.20100000000001000000
.........................................................................................................................................................................................................................................................ACGGGTATCTGATAGTCTG.................................................................................................................................................................................................................................................................................................................................19100.10100000000001000000
...................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTCTT.................................................................................................................................................................................................................................................................................................................................25200.10200000000000020000
................................................................................................................................................................................................................................................AGCTGAGTAACGGGTATCTGATAGTC...................................................................................................................................................................................................................................................................................................................................26200.10200000000002000000
...............................................................................................................................................................................................................................................TAGCTGAGTAACGGGTATCTGATAG.....................................................................................................................................................................................................................................................................................................................................25200.10200000002000000000
...................................................................................................................................................................................................TG----------AAATTTCGCGTTCGCATT............................................................................................................................................................................................................................................................................................................................................................................20200.10200000000002000000
................................................................................................................................................................................................................................................AGCTGAGTAACGGGTATCTGATAGT....................................................................................................................................................................................................................................................................................................................................25200.10200000000200000000
...................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTCTGGT...............................................................................................................................................................................................................................................................................................................................27120.08100000000000010000
....................................................................................................................................................................................................G----------AAATTTCGCGTTCGC...............................................................................................................................................................................................................................................................................................................................................................................16200.05100000010000000000
.......................................................................................................................................................................................................................................................TAACGGGTATCTGATA......................................................................................................................................................................................................................................................................................................................................16200.05100000001000000000
...............................................................................................................................................................................................................................................TAGCTGAGTAACGGGTATCTGATAGTC...................................................................................................................................................................................................................................................................................................................................27200.05100000000000010000
droSec2
AGCAACGGTCACACCCACACTTCTAAACAATATTTATATATTTTTTCAGTCTA----TTTCATT---------------------------------------------------------------------------------------------------------------------------AAAAATGTTG----------AAATTTCGCGTTCGTATTTCCA---------GTAGTTGAGTAACGGGTATCCGATAGTCTGGAA----ACTCGACTATAGTATTC-CCAC----------------------------------------------------------TTGTTTTGAAA----------TGCTTCCATAAAAA------------ACA--------------------------------TAACCATTGAACAGAATAATTTTTT------TT--------------------------------TTCAAGGTGGTCCCCATTGG-TTG-----------GAA-AATTAAAATACTT---GGC--GGA-------------AGTTAACCTAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTT---GGC--GGA-------------AGTTAACCTAA2211.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCCATTGG-TTG-----------GAA-................................................1811.0011000
dm3
AAA-ACAGTCACA----CAGTTTTGAACAATATTTATTTATTTTCTCATTTTA----TTTCCCA---------------ATATCTATCGATATCCCAG-----------------------------------------------------------------------------------------AAAAATTTCG----------AAATTTAGCGTCTGCATTTCTA---------GTAGCTGAGTAACGGGTATCTGATAGTCTGGGA----AGTCGACTATAGTATTT-CCAC----------------------------------------------------------TTGTTTTAAATGTGAATTAAGTGCTTCCATACAAA------------ACA--------------------------------TAACTATTAAACGGAATAATTTTTT------TT--------------------------------TTCAAGGTGGTCCCCATTTA-CCG-----------GAA-AATTAAAATACTT---GGC--GGA-------------AGTAAACCTAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTCTGG................................................................................................................................................................................................................................................................................................................................26221.50430000000000000000000000000000000000000000000010001000010000000000000000000000000000110000000000000000000000000000000000000000000000100020000500000310100000000000000000000000000000000000000000000000000000001000000000000050001170000000000000000000000000000000000000000000000000000000000003000000100000000320000000000000000100000000
...........................................................................................................................................................................................................................TGCATTTCTA---------GTAGCTGAGTAACGGG...............................................................................................................................................................................................................................................................................................................................................26114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000100000002000000000008000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTC...................................................................................................................................................................................................................................................................................................................................23207.9515900000000000000000000000000000000000000000000000000000300000000000000000000000000001300000000000000000000000000002000000000000000000000000000000000000090026000000000000000000001000000000000000000000000000000000000000002000000000000000000000300000000200000000000000000000000000000000000000000003000260000000068000000000001000000000000
.............................................................................................CCCAG-----------------------------------------------------------------------------------------AAAAATTTCG----------AAATTTAGCGTCT.................................................................................................................................................................................................................................................................................................................................................................................2816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTCT..................................................................................................................................................................................................................................................................................................................................2454.40220000000000000000000000000000000000000000000000000000000000000000000000000000000000020010000000100000000000000000000100000000000000000000000000000100000000000000000000000000000000000000000000000001000000001000000000100410000020000000000000000000000000000000000000000000000000000000000000000002001000000100000000000000000011000000
.........................................................................................................................................................................................................................TCTGCATTTCTA---------GTAGCTGAGTAACGGG...............................................................................................................................................................................................................................................................................................................................................2814.0040000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-CCG-----------GAA-AATTAAAATACTT---GGC--GG.........................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................GA----AGTCGACTATAGTATT..........................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTCTGGG...............................................................................................................................................................................................................................................................................................................................2723.5070000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000
...............................................................................................................................................................................................................................................TAGCTGAGTAACGGGTATCTGATAG.....................................................................................................................................................................................................................................................................................................................................25203.4569000000000000000000000000000000000000000000000000000000000010000000000000000000000100000000000000000000000000000000010000000000000000100000010013000000000800000000000000000000000000000000000000000000000000000000000001000000020000000000000000000000000000000000000000000000000000000000000000000000000000000330000000000000007000000000
...................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTCTG.................................................................................................................................................................................................................................................................................................................................2543.25130000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001000000000000100000000000000000000000000000000000000000000000003000000000000100000020000000000000000000000000000000000000000000000000000000000002000000000000000010000000000000000000000000
..............................................................................................................................................................................................................................................................................A----AGTCGACTATAGTATTT-CCAC----------------------------------------------------------TTG.......................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TCTA---------GTAGCTGAGTAACGGGTATCTGA........................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................TTTCCCA---------------ATATCTATCGATATCCCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25202.8557000000000000000000000100000000000000000000000000000000000310000000000000000000000020001000000000000000000000000010000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000010000010001205066140000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
...............................................................................................................................................................................................................................................TAGCTGAGTAACGGGTATCTGA........................................................................................................................................................................................................................................................................................................................................22202.4549000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000230000000017100000000000000003000400000
...............................................................................................................................................................................................................................................TAGCTGAGTAACGGGTATCTGAT.......................................................................................................................................................................................................................................................................................................................................23202.2044000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000100000000017000000000000000000000000000000000000000000000000000000000000000000000000000000000000000703000000000000000000000002030000000
...............................................................................................................................................................................................................................TTTCTA---------GTAGCTGAGTAACGGGTATC...........................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCG-----------GAA-AATTAAAATACTT---GGC--...........................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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CACGCCCACAAACC----------AAACATTTT-TTCCCAATTT---------------------------------------CTACAGATATTCCA------------------------------------------------------------------------------------------AAAAATGTTG----------AAATTTCTCGTTTGCACTTAAA---------CTAGCTGAGTAACGGGTATCTGATAGTCGGGGA----GCTCGACTATAGCATTC-TATC----------------------------------------------------------TTGTTTTAATTGTA---------ATTTCA-ACGT---------------------------------------AACG-------------------------------------------------------------------------AAGGTGGTT------GGATTGG----------AAA-AACTAATATATTT---GAAAGGGA-------------AG-C--AACAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................GGTATCTGATAGTCGGGGA----GC........................................................................................................................................................................................................................................................................................................................21200.0510000100
droYak3
CAAAACTACCACTTCCAAACTTTTAAAACAT----------TTAAACAA----TTTATTTATTTAAGGTTGTTAATCCCTGTTTTATCAATATGCCTG-----------------------------------------------------------------------------------------GAAATTTTTA----------AAATTTCCCATTCGCACTTCCA---------TTAGCTGAGTAACGGGTACT---GAGTCGGGGA----ACTCGACTTTAGCATTC-TCTCTTATTTCCAATATAATTGCTGAAAGGTTTTTCAGGCATGCCCAAGCTTGCGTCCTTTTTTGTTAAA--------------------------TA------TTGAGT----------------------TATAACAAATGATATTAAT-----------------------------------------------------------------------------A-TTA-----------AGA-AATCAAAAGACTT---AGA--GAA-------------ATTCTACTTAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................TATAATTGCTGAAAGGTTTTTCAGGCA...............................................................................................................................................................................................................................................................2711.00101000000000
droEug1
TTCCACTAGCAAAATTAATATTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------AAAT--------T-------GT---------GTAAAACAGTAACGGGTATCTTATAGTCGCGGC----ACTCGACTATAGCGTTT-CCTC----------------------------------------------------------TTGTTTTATTACTA---------ATTTCGAA--AA-ATCAAA-----CCTTAACACTTACAAAATAAATCTTTT-----------------T------CAG--G-GA------GT--------------------------------TT----AT-------------TAA-----------AAT-TCTTAATCTAAAT---ATT--AAA-------------AATTGACATAASizeHit CountTotal NormTotal
No Reads
droBia1
TAACACTGTCTGCCG--CCC------------------------------------------------------------------------------AAAATATCCAGTAGGTGGCACTTTAGAATATTTCTTTGCTGTTTATATATTTCCATT-----------------------------------------T----------TTATTT--------TTCTCCCT---------CAAGCTAAGTAACGGGTATCTGATAGTCGAGGT----ACTCGACTATAACGTTC-TTCC----------------------------------------------------------TTGTTGTTTTTTAA-----ATTGCT-----AA--TT------TTGAAT----------------------TTTTTCG-------------------------------------------------------------------------AAGACG--------TAA-ATA-----------AAA-AATTCAATTTCTTGGTAAA--AAA-------------AATC-GGCTAASizeHit CountTotal NormTotal
No Reads
droTak1
AAAAA--GTTATACGCAATC----AAAATTTATATATCTATCTC--------------------------------------------------CCTCGCACTAT-------------------------------------------------------------------------------------------C----------CAGTACAGCGTTCGCACTCCCT---------TTAGCTGAGTGACGGGTATTAGATAGTCGGGAGACCAACCCGACTATAGCGTTC-TCTC----------------------------------------------------------TTGTTTTTAAC----------TCGTTTTAAACAA---TAAAA-----C------------------GATCTC----------TC-------A------CAGCTG-CA------GT--------------------------------TT----GTGATAGCCATGGA-AAG-----------GAA-AA--------------------------------------------TTSizeHit CountTotal NormTotal
No Reads
droEle1
ATTTT--------------------------------------------------------AAG---------------------------------------------------------------------------------------------------------------------------GGGAATACTT----------AGA--------TTGCACTT-TG---------TTGGCCGAGTAACGGGTATCTTATAGTCGGGAA----TCTCGACTATAGCTTTC-TCTC----------------------------------------------------------TTGTTTTATATTAC---GAGCTGCTGCCAT-------------------------------------------------------------------------------------------------------------------------------------------TAGAAAATATAAAGATGTTTTTTCAAATTC---CAT--------------------TC--GGTTGSizeHit CountTotal NormTotal
No Reads
droRho1
TATTACCGTTACTCGTGTTG-----------------------------------------------------------------------------------------------------------------------------TGCAAACATTTAGACTTACATATATAATTCTATTTAATACTT---------AATCTTATATTAAG---------------TTGT---------TTAGCTGAGTAACGGGTATCTAATAGTCGAGGC----ACTCGACTATAGCGTTC-TCTC----------------------------------------------------------TTGTTTTGTTTTTC----------ATTGTCTAAAT------------ATA--------------------------------TAGTGGTTTA------TAGT---TT------CC--------------------------------CTGAAGACGGTTGCC----------------------------------------------GAAGTTAAAAATAAACAATAAAATATSizeHit CountTotal NormTotal
No Reads
droFic1
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGGGTATATGGTAGTCATGAA----ACTTGCCTGTAGTGCAC-TGCC----------------------------------------------------------TTGTTTTTTCTATG----------GTAGAAATAAA------------ATT--------------------------------CAGTTGTTTG------A------------------------------------------------------------------------------------------------------TTA-------------------------TTAAGSizeHit CountTotal NormTotal
No Reads
droKik1
GG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATTTCAACTTCG-GCT----AGCCGAAGTTAGCTTCC-TTTC----------------------------------------------------------TTGTTTTTAAA----------TAATTTAATACAAA------------ATT--------------------------------CAATTATTTT------AAATGT-TT------T-------------------------------------------------------------------------------------------------------------------TTCCASizeHit CountTotal NormTotal
No Reads
droAna3
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTACCTGGTATCACATAGTCGGGAA----ACTCTACTATAGCCGTC-CTTT----------------------------------------------------------CATTTTTAAGTTAG--------------A-A--AG-ACTGAA-----CC---------------------TT----------CC-------A------TGGTTT-CT------AC--------------------------------TTCTGCAC---AACTTTTAT-AAG-----------GAAAATTTATTATATTT---GAT--------------------------TTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ATTTTTCCATACTGTTAATG-----------------------------------------------------------------------------------------------------------------------------TTTAAACTTT-----------------------------------------C----------AAGTTTAGTT-------AAACTGTGGTTAGAAGAGATGAGCACCGGGTATAATATAGTCAAGAA----TCTCGACTATAGCCGTCCTTTC----------------------------------------------------------TTGTATTATTTAA----------ATTTAATAA--GT-----------CCA--------------------------------TATACATTGA------TAAA---------------------------------------------------------------------------------TT---------------------------------------------TATTSizeHit CountTotal NormTotal
No Reads
dp5
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAGTAGCGGGTATTTTGTAGTCGGAAC----CCTCGACTAAGGCATTT-TTTC----------------------------------------------------------TCGTTTGAAAA----------AAATGTTAAAAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................GTATTTTGTAGTCGGAAC----C.........................................................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
AATGG---TTATACCCGCTG------AGAGGATTTAACCATATACTCGAG---TTTATTTAATT---------------------------------------------------------------------------------------------------------------------------AAAATTCTAA----------AAGTATCACTTTGATATTTTCA---------AAAGCTATGAAACATAAATATTATAGTGG--CA----AGTCC---ACTGCGTAC-TCGC----------------------------------------------------------TTTGTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AAACACGAACATTTTGACATTTCTAAACATTTTTTACTTTTCCTTAAATTGTA----TCCCTCA---------------------------------------------------------------------------------------------------------------------------AAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AGCAT---TCACACACACACACACACATTATATTTATCTTCTTTTTCGTTTTA----CATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
AAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTG----------AAATATCTA--TTG---CTCC--------------AAGGGTTCAGGGGATCTCGTAGTCGAGCA---GTCTCGACTAGAGCTTTC-TTAC----------------------------------------------------------TTGTTTCTATA----------TCTTTTCATTGAGTA------ACATTTCG--------------------------------TAGCAATTAGATAAGATTTTTTTTT-------------------------------------------------GTATTCTTTGG-ACA-----------GTA-GATTAATGTATTT---TTT--GAG-------------GGCAATCGTGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................CTA--TTG---CTCC--------------AAGGGTTCAGG................................................................................................................................................................................................................................................................................................................................................21201.75353500000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTT-------------------------------------------------GTATTCTTTGG-ACA-----------GT..................................................2011.001100000
....................................................................................................................................................................................................................................................................................CTCGACTAGAGCTTTC-TTAC----------------------------------------------------------TTGTTTC...................................................................................................................................................................................................................................27200.153300000
..........................................................................................................................................................................................................................TTG---CTCC--------------AAGGGTTCAGGGGA.............................................................................................................................................................................................................................................................................................................................................21200.102000002
..................................................................................................................................................................................................................................................................TCGTAGTCGAGCA---GTCTCGACTAGAGC.............................................................................................................................................................................................................................................................................................................27200.102200000
.....................................................................................................................................................................................................................................................................................TCGACTAGAGCTTTC-TTAC----------------------------------------------------------T.........................................................................................................................................................................................................................................20200.102200000
..........................................................................................................................................................................................................................TTG---CTCC--------------AAGGGTTCAGGGG..............................................................................................................................................................................................................................................................................................................................................20200.051000001
......................................................................................................................................................................................................................TA--TTG---CTCC--------------AAGGGTTCAGGGGAT............................................................................................................................................................................................................................................................................................................................................24200.051000010
.................................................................................................................................................................................................ATTG----------AAATATCTA--TTG---CTC..........................................................................................................................................................................................................................................................................................................................................................................19200.051100000
....................................................................................................................................................................................................................................................................................CTCGACTAGAGCTTTC-TTAC----------------------------------------------------------TTGTTTCT..................................................................................................................................................................................................................................28200.051000100
...................................................................................................................................................................................................................................................................................TCTCGACTAGAGCTTTC-TTAC----------------------------------------------------------TTG.......................................................................................................................................................................................................................................24200.051000001
...............................................................................................................................................................................................................................................................ATCTCGTAGTCGAGCA---GTCTCGACT..................................................................................................................................................................................................................................................................................................................25200.051100000
droGri2
TTTGT--------------------------------TCGTTTTATTGTCATA----TTTATTG---------------------------------------------------------------------------------------------------------------------------ATAAAAATCG----------AAATTTCGGATTCGTCTATATA---------GAATT-----------------ACACTCTGCG-------------------------------------------------------------------------------------------------------------------------------AAATTCGA--------------------------------TTAAAGTCACTTGAATTTTTTTAATATAATATGTAGAAATGACATGAAAATAATAAATTAATAATGTGCCCATCCTCCAGATTTG-TTG-----------ATA-ACTAAAAAA-----------------------------------AATTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:47 AM