ID:

dsi_5571

 Coordinate:

3r:4766768-4766917 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.7 -42.7 -42.7 -42.7

Flybase annnotation

five_prime_UTR [3r_4766706_4766767_+]; exon [3r_4766706_4766767_+]; intron [3r_4766768_4767498_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGCGGAGAAAACTGGCCAGAACTAACGGTTCTTGCCGACGGCACATAACGGTAGCTAACAGTGTTGCGTGGGTGTAAGTGTAAGGAAGCGCTGTGTGGGTGTGTGCACTTGTGCGTGTGTGTGTGAGTTGCCGAAGCGCCGAGTGCGAGTGCTCGTGATCGCGAACAACAGCTGTTTAGCACCATTTTGCGAATTCAGTTCCTGTTGAGTCCTCGATCGAAGCATAAGGATGTTAGCCATACAATTGAAG
**************************************************..((.........((((..(((((...((((....(((((((((((..(((((.((((((((((.((.((((.((......))..)))))).)))))))))).))....)))..))).)))).)))).))))))))).))))......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
AGCGGAGAAAACTTGCCAGAAC.................................................................................................................................................................................................................................... 22 1 1 2.00 2 2 0 0 0 0
............................................................................................................................................................................................................TTGAGTCCTCGATCGAAGC........................... 19 0 1 1.00 1 0 0 1 0 0
...GGAGAAAACTGGCCAGAACTAACGG.............................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0
...........................................................................................................CTTGTGCGTGTGTGTGTGA............................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0
.GCGGAGAAAACTGGCCAGAACTA.................................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0
.........................CGGTTCTTGCCGACGGCA............................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0
....................................................................................................................................................................................................................................GATGTTAGCCATACAATT.... 18 0 1 1.00 1 0 1 0 0 0
........................ACGGTTCTTGCCGACGGC................................................................................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0
..........................................................................................................................................................................................................................TAAGCATAAGGACGGTAGC............. 19 3 9 0.22 2 0 0 2 0 0
...........................................................AGTGTTGCGTCGGTG................................................................................................................................................................................ 15 1 6 0.17 1 0 0 0 0 1
.....................CTAACGATTCTTGAAGACG.................................................................................................................................................................................................................. 19 3 9 0.11 1 0 0 0 0 1
........................................................................................................................TTGTGAGATGCCGAAGC................................................................................................................. 17 2 10 0.10 1 0 0 0 0 1
....................................................................................GAAGCGCTGGGCGGGT...................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1
.........................................................TCAGTCTTGCGTGGGT................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 1
...............................................................................................................TGCGTGTGTGTGTGAGT.......................................................................................................................... 17 0 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

TCGCCTCTTTTGACCGGTCTTGATTGCCAAGAACGGCTGCCGTGTATTGCCATCGATTGTCACAACGCACCCACATTCACATTCCTTCGCGACACACCCACACACGTGAACACGCACACACACACTCAACGGCTTCGCGGCTCACGCTCACGAGCACTAGCGCTTGTTGTCGACAAATCGTGGTAAAACGCTTAAGTCAAGGACAACTCAGGAGCTAGCTTCGTATTCCTACAATCGGTATGTTAACTTC
**************************************************..((.........((((..(((((...((((....(((((((((((..(((((.((((((((((.((.((((.((......))..)))))).)))))))))).))....)))..))).)))).)))).))))))))).))))......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M023
head
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
........................TACCATGAACGGCTGTCGTG.............................................................................................................................................................................................................. 20 3 3 7.67 23 20 0 0 0 3 0 0 0 0 0 0
.........................ACCATGAACGGCTGTCGTG.............................................................................................................................................................................................................. 19 3 9 5.11 46 46 0 0 0 0 0 0 0 0 0 0
..........................CCATGAACGGCTGTCGTG.............................................................................................................................................................................................................. 18 2 2 4.50 9 9 0 0 0 0 0 0 0 0 0 0
.................................................................................TTCCTTCGCGACACA.......................................................................................................................................................... 15 0 2 1.50 3 0 0 3 0 0 0 0 0 0 0 0
.........................GCCAAGAACGGCTGCCGTGTA............................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CAATTCAGGAGCTAG................................ 15 1 8 1.00 8 0 5 0 0 0 3 0 0 0 0 0
.........................GCCATGAACGGCTGTCGTG.............................................................................................................................................................................................................. 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GCTTCGTATAGCCACAATC.............. 19 3 9 0.78 7 0 0 0 0 0 0 3 1 3 0 0
...........................................................................................................................................................................................................CAATTCAGGAGCTAGAT.............................. 17 2 8 0.63 5 0 4 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................CAATTCAGGAGCTAGCTA............................. 18 2 5 0.60 3 0 1 0 0 0 1 0 0 0 1 0
..........................................................................................................................................................................................................CCAACTCAGGAGCTGGCTA............................. 19 3 15 0.47 7 0 0 0 0 0 0 4 3 0 0 0
..........................................................................................................................................................................................................CCAACTCAGGAGCTA................................. 15 1 11 0.36 4 0 2 0 0 0 2 0 0 0 0 0
...........................................................................................................................................................................................................CAATTCAGGAGCTAGCTAA............................ 19 3 17 0.24 4 0 0 0 0 0 0 0 3 0 1 0
........................................................................................................................................................................................................GCACAACTCAGGATCTA................................. 17 2 11 0.18 2 0 0 0 0 0 0 0 0 0 0 2
...........................................................................................................................................................................................ACGCATAAGTCCAGGACCAC........................................... 20 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................AGGAGCTGGCATCGTATTG...................... 19 3 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................CCAACTCAGGAGCTAGATA............................. 19 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CAATTCAGGAGCTAGCCA............................. 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................CAGACTCAAGGGCTTC.................................................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0

Generated: 04/24/2015 at 10:26 AM