dsi_5567

Name	Class	Family	Strand
(CTG)n	Simple_repeat	Simple_repeat	+
TART_DV	LINE	Jockey	-
(CTG)n	Simple_repeat	Simple_repeat	+

AGACCGCCCCGGCAGCAACAGCAGCAGCACCAGCAACAACAAGCATTCGCGTCGCAGCAGCGCCGGCAGCAACAACAACAAATAGCAAAAACTAAGCAGCGTTCGGCAAAGCGCAGCAACAGCAACAAAGGCAACACTAAAACTAACAGCAGCAACACCACTTGCAACTGCAGCACCAGCAGCAGCAGCAGCAGCATCGACAACAACAACAGCCAAGCGGCGG ************************************************((.((.((.(((((((..((............................))..)))))...)))).)).))..........................(((..((((......))))..)))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	M025 embryo	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
...........................................................................................................AAAGCGCAGCAACAGCAACAAAGGC...........................................................................................	25	0	1	1.00	1	1	0	0	0	0
.......................................................................................AAAATTAAGCAGCGTCCGGC....................................................................................................................	20	2	4	0.25	1	0	1	0	0	0
........................................................................................................GGCAATGCGCAGGAACAGTAA..................................................................................................	21	3	5	0.20	1	0	0	1	0	0
..ACCGCCCCGGTAGCAA.............................................................................................................................................................................................................	16	1	6	0.17	1	0	0	0	1	0
......CCCCGGTAGCAACGGCA........................................................................................................................................................................................................	17	2	14	0.07	1	0	0	0	0	1

TCTGGCGGGGCCGTCGTTGTCGTCGTCGTGGTCGTTGTTGTTCGTAAGCGCAGCGTCGTCGCGGCCGTCGTTGTTGTTGTTTATCGTTTTTGATTCGTCGCAAGCCGTTTCGCGTCGTTGTCGTTGTTTCCGTTGTGATTTTGATTGTCGTCGTTGTGGTGAACGTTGACGTCGTGGTCGTCGTCGTCGTCGTCGTAGCTGTTGTTGTTGTCGGTTCGCCGCC ************************************************((.((.((.(((((((..((............................))..)))))...)))).)).))..........................(((..((((......))))..)))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	GSM343915 embryo	SRR902009 testis	SRR553487 NRT_0-2 hours eggs
....................................................................................................................................................................................................AGATGTCGATGTTGTCGGTTCG.....	22	3	4	0.25	1	0	1	0	0
........................................................................................................CCGTTACGCGTCCTTGTCATT..................................................................................................	21	3	5	0.20	1	0	0	1	0
......................................................................................................................................................................................GTCCTCGTCGTCGTAGCT.......................	18	1	20	0.10	2	2	0	0	0
................................................................CCGTCGTTGTTGTTGT...............................................................................................................................................	16	0	20	0.10	2	2	0	0	0
.......................CGTCGTGGTCGTTGTTGTT.....................................................................................................................................................................................	19	0	10	0.10	1	1	0	0	0
.......................................................................................................................................................................................TCGTTGTCTTCGTAGCTGATGT..................	22	3	12	0.08	1	0	0	0	1
.......................................TTTCGTGAGCGCAGCGT.......................................................................................................................................................................	17	2	20	0.05	1	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	x:9977526-9977748 -	dsi_5567	AGACCG------------CCCCGGCAGCAACAGCAGCAGCACCAGCAA--CAA---CAA--GCATTCGCG----TCGCAGCAGCGCCGGCAGC------AACAACAACAAA---TAGCAAAA------------A-------CTAAGCAGCGTTCGGCAAAGCGCAGCAACAG---CAA---CAAAGGCAACACTAAAACTAACA---------------------GCAGCA------------ACACCAC----TTGCAACT---------GCAGCACCAGCAGCAG------CAGCAGCAGCA------TCGACAACAACAACAGC-------------------------------C-AAGCGGCGG
droSec2	scaffold_15:1216974-1217196 -		AGACCG------------CCCCGGCAGCAACAGCAGCAGCACCAGCAA--CAA---CAA--GCATTCGCG----TCGCAGCAGCGCCGGCAGC------AACAACAACAAA---TAGCAAAA------------A-------CTAAGCAGCGTTCGGCAAAGCGCAGCAACAG---CAA---CAAAGGCAACACTAAAACTAACA---------------------GCAGCA------------ACACCAA----TTGCAACT---------GCAGCACCAGCAGCAG------CAGCAGC---A---TCAACAACAACAACAACAGC-------------------------------C-AAGCGGCGG
dm3	chrX:10512605-10512815 -		AGACCG------------CCCCGGCAGCAACAGCAGCAGCACCAGCAA--CAA---CAA--GCATTCGCG----TCGCAGCAGCGCCGGCAGC------AACAACAACAAA---TAGCAAAA------------A-------CTTAGCAGCGTTCGGCAAAGCGCAGCAAAAG---CAA---CAAAGGCAACACTAAAACTAACA---------------------GCAGCA------------ACACCAA----TTGCAACT---------GCAGCACCA---------------GCAGC---A------TCAACAACAACAACAAC-------------------------------C-AAGCGGCGG
droEre2	scaffold_4690:4615194-4615410 +	der_373	AGACCG------------CCCCGGCAGCAACAGCAGCAGCACCAACAA--CAA---CAA--GCATTCGCG----TCGCAGCAGCGCCGGCAGC------AACAACAACAAA---TAGCAAAA------------A-------CTTAGCAGCGTTCGGCAAAGCGCAGCAACAG---CAACAACAAAGGCAACACTAAAACTAACA---------------------GCAGCA---ACA---GCAACAGCAA----GTGCAACT---------GCAACACCAGCAG---------------------------CAGCAGCAGCAACAAC-------------------------------C-AAGCGGCGG
droYak3	X:19081683-19081884 -		AGACCG------------CCCCGGCAGCAACAGCAGCAGCACCAACAA--CAA---CAA--GCATTCGCG----TCGCAGCAGCGCCGGCAGC------AACAATAACAAA---TAGCAAAA------------A-------CTGAGCAGCGTTCGGCAAAGCGCAGCAACAG---CAA---CAAAGGCAACACTAAAACTAACA---------------------GCAGCG------------ACACCAA----TTGCTACT---------GCAACACCA---------------------------------GCAGCAGAAACAAC-------------------------------C-AAGCGGCGG
droEug1	scf7180000409538:185103-185298 +		AGATCG------------CCCCGGCAGCA---------------ACAA--CAA---CAA--CCATTCGCG----TCGCAGCAGCGCT---AGC------AACAACAATAAA---TAGCAAAA------------A-------CTGAGCAGCGTTCGGCAAAGCGCAGCAACAG---CAA---CAAAAGCAACACTAAAACTAACA---------------------GCAGCA---------GCAAAACCAA----TTGCAACT---------GCAGCAGTA---------------ACAAC---A------ACAACAACAGCAACATC-------------------------------C-AAACGGCGA
droBia1	scf7180000302126:3414352-3414585 -		AGACCG------------CCCCGCCAGCAACAGC------------AG--CAA---CAA--CCATTCGCG----TCGCAGCAGCGCC---AGC------AACAACAACAAA---TAGCAAAA------------A-------CTGAGCAGCGTTCGGCAAAGCGCAGCAACAG---CAA---CAAAGGCAACACTGAAAATAACAACGGCAGCAGCAGCAGCAGCAGCAACA------------ACACAAA----TTGCAACT---------GCAACGGCA---------------------------------------GCAACAACCAAGCGGCGACAGGCGGTAAACAGCAGCAGCAGCAGCGGCAG
droTak1	scf7180000415394:331968-332145 -		AGACCG------------CCCCGGCAGCA---------------ACAA--CAA---CAA--CCACTCGCG----TCGCAGCAGCGCC---AGC------AACAACAACAAA---TAGCAAAA------------A-------CTGAGCAGCGTTCGGCAAAGCGCAGCAACAG---CAA---CAAAGGCAACACTGAAACTAACA---------------------GCAGCA---------GCAACACCAA----TTGCAATT---------GCA------------------------------------------ACAGCAACAAC-------------------------------C-AAGCGGCGA
droEle1	scf7180000491087:107172-107364 +		AGACCG------------CCCCGGCAGCAAC------------AACAA--CAA---CAA--CCATTCGCG----TCGCAGCAGCGCC---AGC------AACAACAACAAA---TAGCAAAA------------A-------CTGAGCAGCGTTCGGCAAAGCGCAGCAACAG---CAA---CAAAGGCAACACTAAAAATAACA---------------------CCAGCA---GCA-------------------GCAACA---------GCA---------GCAG------CAGCAGCAACA------GCAGCAGCAACAACAAC-------------------------------C-AAGCGGCGA
droRho1	scf7180000780277:36887-37076 -		AGACCG------------CCCCGGCAGCA---------------ACAA--CAA---CAA--CCATTCGCG----TCGCAGCAGCGCC---AGC------AACAACAATAAA---TAGCAAAA------------A-------CTGAGCAGCGTTCGGCAAAGCGCAGCAACAG---CAA---CAAAGGCAACACTTAAAATAACA---------------------GCAACA---------GAAACGCCAA----TTGTCACA---GCAACTGCAA------------------------------------CAGCAGCAACAACAAC-------------------------------C-AAGAGGCGA
droFic1	scf7180000454050:472781-472997 -		TGACCG------------CCCCGCCAGCA---------------ACAA--CAA---AAA--GCATTCGCG----TCGCAGCAGCGCC---AGC------AACAACAACAAA---TAGCAAAA------------A-------CTGAGCAGCGTTCGGCAAAGCGCAGCAACAG---CCA---CAAAGGCAACACTGAAGATAACA---------------------GCAGCA---------GCGATACCGA----TTGCAACT---------GCAACAGCAACAGCAGCAGCAGCAACAAC---AGCAGCAGCGGTAGCAACAGCAAG-------------------------------C-AAGCGGCGA
droKik1	scf7180000302698:592264-592461 +		AGCCCA--CTAG------CGGCGGCAGCA---------ACAGCAGCAA--CAA---TAA--GCATTCCCG----TCGCAGCAGTGCC---AGC------AACAATAACA-A---TAGCAAAA------------A-------CTGAGCAGCGTTCGGCAAAGCGCAGCAAC------AA---CCAAGGCAACACTAAAAACAACA---------------------ATAACA---ACAGC---AGCA----------GCAACG---------GCAATAGCA---------------GCAGC---A-------CAACAACAACAACAAC-------------------------------G-TTGCAGTCG
droAna3	scaffold_13337:7363301-7363500 +		CAACAA------------CAACAGCAGCA---------GCAGCAGCCACCCAA---CAT--GCATCATCA----TC--------ATC---AGC------AGCAGCAGCA----TCAACAACATCAACAGCAGCAG-------C--AGCAGCAT-----------CAGCAACAT---------CAACAGCAGCAGCAACAACAGCA---------------------GCAGCA---GC------AGCAACAT----ATGCAACA---------GCAGCAGCA---G---------CAACAAC---AACAGCAGCAGCAGCAGCAACATC-------------------------------C-CAGCATTGG
droBip1	scf7180000396360:488634-488845 -		AAGT-AGAAATGCGACGGCTGCAGCAGCA---------------GCAG--CAACAGCAG--------TAT----CAGCAGCTGCAGCAGCATCAACAACTGCAGC---A-GCATCAACAACAGCAA---------------------CAGC----ATCAA-CAACAGCAGCAGCATCAA---CAACAGCAGCATCAACAACAGCA---------------------ACAGCA---TCAGCA---ACT---G----CAGCAGC---------------ATCAGCAACAG------CAACAGC---A---TCAACATCAGCAGCAT----------------------------------CAACAACAGCAG
dp5	3:11444785-11445008 -		AGGCGA------------T-CCAGCAGCATCACCAGCATCTCCAGCAG--CAA---CATCATCATCAGCAGCAGCATCAGGCGCAGCAGCAGGCACAGCAACAGCAGCA----------GCA------------ACAGCAGGCTCAGCAGC--------AGGCTCAGCAACAG---CAA---CAACAACAGCAGCAACAACAGCA---------------------ACAACAACAGCAACA---ACA---G----CAGCAACA---------GCAGCA------GCAG------CAGCAGC---A---ACAACAACAGCAGCAA----------------------------------CAGAAGCTAAAG
droPer2	scaffold_33:723643-723837 +		CAGCAG------------CAACAGCAGCA---------GCAGCAGCAA--CAG---CA--------GCAG-CAGCAACAGCAGCAGCAGCAGCAACAGAAGCAG----------CAGCAGCA------------ACAGCAGCAACAGCAG-------CAG-TAACAGCAGCAG---CAG---CAACAGCAGCAGCAGCAACAGCA---------------------GCAGCA---AC------AGCAACAG----AAGCAGCA---------GCAGCAGCA---G---------CA---------------ACAGCAACAGCAACAG----------------------------------CAGCAGCAG
droWil2	scf2_1100000004515:3772057-3772252 -		AGAGC--------------------AG------CAACAACAACAACAA--CAA---CAG--CAATTCGCG----TCGCCACAGCGCCAGCAAT------AACAACAATAAA---TAGCAAAA------------A-------CTGAGCAGCGTTCGGCAAAGCGCACCAACAA---CAG---TAACAGCAACAGTAACAACAACA---------------------ACAACA------------ACGCGAAATAAACGTAGCCGCAGCCGCTG---------------------CAG---------------CAGCGTTGGCAG----------------------------------CGACGCCAGCAG
droVir3	scaffold_12970:4854285-4854499 +		AGC-AG------------CAGCAGCAACAAGAGCAGCAGCAGCAGCAA--CAA---GAGCAGCAGCAGCA------GCAACAAGAGCAGCAGC------AGCAGC---A-ACAACAAGAGCAGCAG------------------CAGCAGCAA----C-AAGAGCGGCAGCAG---CAA---CAATGACAGCAGCAGCAAAAGCA---------------------ACAGCAATAGCAAT---GGCG----------GCAAGA---------GCAGCAGCA---GCAG------CAGCAAT---A---GCAGCAAGAGCAGCAG----------------------------------CAGCAGTGGCAG
droMoj3	scaffold_6500:16033452-16033675 -		AAC-AACAG---------CAGCAGCAGCA---GTAGCAGCAGCAGCAG--CAG---CAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGC------AACAACAGCA-G---CAGCAGCA------------ACAG----C--AGCAGCAG-CAGCAA-CAGCAGCAGCAG---CAG---CAACAGCAGCAGCAGCAGCAACA---------------------GCAGTAGCAGCAGCA---GCA-------------ACA---------GCAGCAGCAGCAACAG------CGGCAGC---A---GCAGCAACAGCAACAG----------------------------------CAGCAGCAGCAG
droGri2	scaffold_15500:1080-1297 -		AGC-AG------------CAGCAGCAGCAGCAGCAGCAGCGGCAGCAG--CAG---CAG--CAGCAGGAG----CGGCAGCAGCAGCAGCAGC------AGCAGCAGCA-G---CAGCAGCAGCAG------------------TAGCAGCAT-CAGCAGC-GGCAGCAGCAG---CAG---CAGCGGCAGCAGCAGCAGCAGCA---------------------GCGGCAGCAGCAGCA---GCA-------------GCA---------GCGGCAGCAGCAGCAG------CAGCAGC---A---GCAGCAGCGGCAGCAG----------------------------------CAGCAGCGGCAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AGACCG------------CCCCGGCAGCAACAGCAGCAGCACCAGCAA--CAA---CAA--GCATTCGCG----TCGCAGCAGCGCCGGCAGC------AACAACAACAAA---TAGCAAAA------------A-------CTAAGCAGCGTTCGGCAAAGCGCAGCAACAG---CAA---CAAAGGCAACACTAAAACTAACA---------------------GCAGCA------------ACACCAC----TTGCAACT---------GCAGCACCAGCAGCAG------CAGCAGCAGCA------TCGACAACAACAACAGC-------------------------------C-AAGCGGCGG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................................AAAGCGCAGCAACAG---CAA---CAAAGGC.....................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

AGACCG------------CCCCGGCAGCAACAGCAGCAGCACCAGCAA--CAA---CAA--GCATTCGCG----TCGCAGCAGCGCCGGCAGC------AACAACAACAAA---TAGCAAAA------------A-------CTAAGCAGCGTTCGGCAAAGCGCAGCAACAG---CAA---CAAAGGCAACACTAAAACTAACA---------------------GCAGCA------------ACACCAA----TTGCAACT---------GCAGCACCAGCAGCAG------CAGCAGC---A---TCAACAACAACAACAACAGC-------------------------------C-AAGCGGCGG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................CAGCAGCAGCACCAGCAA--C...............................................................................................................................................................................................................................................................................................................................	19	16	0.06	1	0	0	1	0
..................................................................................................................................................................................................................................................................................AGCACCAGCAGCAG------CAGC........................................................................	18	20	0.05	1	1	0	0	0
............................AACAGCAGCAGCACCAGC....................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0

dm3

AGACCG------------CCCCGGCAGCAACAGCAGCAGCACCAGCAA--CAA---CAA--GCATTCGCG----TCGCAGCAGCGCCGGCAGC------AACAACAACAAA---TAGCAAAA------------A-------CTTAGCAGCGTTCGGCAAAGCGCAGCAAAAG---CAA---CAAAGGCAACACTAAAACTAACA---------------------GCAGCA------------ACACCAA----TTGCAACT---------GCAGCACCA---------------GCAGC---A------TCAACAACAACAACAAC-------------------------------C-AAGCGGCGG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................................................................................................................................................................................................................CA------------ACACCAA----TTGCAACT---------GCA...............................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AGCGCAGCAAAAG---CAA---CA..........................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TAGCAGCGTTCGGCAAAGGT..............................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TAGCAGCGTTCGGCAAAGCGCAG...........................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................GCAGC---A------TCAACAACAACA...............................................	18	7	0.71	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................AACAACAACAACAAC-------------------------------C-AAGCG....	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................A---------------GCAGC---A------TCAACAACAACAACAAC-------------------------------...........	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................CAACAACAACAACAAC-------------------------------C-AAGCG....	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................ACAACAACAACAAC-------------------------------C-AAGC.....	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................CAACAACAACAACAAC-------------------------------C-AAG......	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CAGCAGCACCAGCAA--CAA---C.........................................................................................................................................................................................................................................................................................................................	19	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................CA---------------GCAGC---A------TCAACAACAAC................................................	19	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................ACAGCAGCAGCACCAGCA...................................................................................................................................................................................................................................................................................................................................	18	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CAGCAACAGCAGCAGCACC.......................................................................................................................................................................................................................................................................................................................................	19	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CAACAGCAGCAGCACCAGC....................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AGACCG------------CCCCGGCAGCAACAGCAGCAGCACCAACAA--CAA---CAA--GCATTCGCG----TCGCAGCAGCGCCGGCAGC------AACAACAACAAA---TAGCAAAA------------A-------CTTAGCAGCGTTCGGCAAAGCGCAGCAACAG---CAACAACAAAGGCAACACTAAAACTAACA---------------------GCAGCA---ACA---GCAACAGCAA----GTGCAACT---------GCAACACCAGCAG---------------------------CAGCAGCAGCAACAAC-------------------------------C-AAGCGGCGG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................................................................................................................................................................................................................ACACCAGCAG---------------------------CAGCAGCAGC................................................	20	20	0.05	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................AACA---------------------GCAGCA---ACA---GCAACA...........................................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................ACA---------------------GCAGCA---ACA---GCAACAGC.........................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................CACCAGCAG---------------------------CAGCAGCAGCA...............................................	20	20	0.05	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................AACACCAGCAG---------------------------CAGCAGCA..................................................	19	20	0.05	1	1	0	0	0	0	0	0

droYak3

AGACCG------------CCCCGGCAGCAACAGCAGCAGCACCAACAA--CAA---CAA--GCATTCGCG----TCGCAGCAGCGCCGGCAGC------AACAATAACAAA---TAGCAAAA------------A-------CTGAGCAGCGTTCGGCAAAGCGCAGCAACAG---CAA---CAAAGGCAACACTAAAACTAACA---------------------GCAGCG------------ACACCAA----TTGCTACT---------GCAACACCA---------------------------------GCAGCAGAAACAAC-------------------------------C-AAGCGGCGG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................AGCAGCGCCGGCAGC------AACAA..........................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	1	0	0	0	0	0

droEug1

AGATCG------------CCCCGGCAGCA---------------ACAA--CAA---CAA--CCATTCGCG----TCGCAGCAGCGCT---AGC------AACAACAATAAA---TAGCAAAA------------A-------CTGAGCAGCGTTCGGCAAAGCGCAGCAACAG---CAA---CAAAAGCAACACTAAAACTAACA---------------------GCAGCA---------GCAAAACCAA----TTGCAACT---------GCAGCAGTA---------------ACAAC---A------ACAACAACAGCAACATC-------------------------------C-AAACGGCGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGACCG------------CCCCGCCAGCAACAGC------------AG--CAA---CAA--CCATTCGCG----TCGCAGCAGCGCC---AGC------AACAACAACAAA---TAGCAAAA------------A-------CTGAGCAGCGTTCGGCAAAGCGCAGCAACAG---CAA---CAAAGGCAACACTGAAAATAACAACGGCAGCAGCAGCAGCAGCAGCAACA------------ACACAAA----TTGCAACT---------GCAACGGCA---------------------------------------GCAACAACCAAGCGGCGACAGGCGGTAAACAGCAGCAGCAGCAGCGGCAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGACCG------------CCCCGGCAGCA---------------ACAA--CAA---CAA--CCACTCGCG----TCGCAGCAGCGCC---AGC------AACAACAACAAA---TAGCAAAA------------A-------CTGAGCAGCGTTCGGCAAAGCGCAGCAACAG---CAA---CAAAGGCAACACTGAAACTAACA---------------------GCAGCA---------GCAACACCAA----TTGCAATT---------GCA------------------------------------------ACAGCAACAAC-------------------------------C-AAGCGGCGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGACCG------------CCCCGGCAGCAAC------------AACAA--CAA---CAA--CCATTCGCG----TCGCAGCAGCGCC---AGC------AACAACAACAAA---TAGCAAAA------------A-------CTGAGCAGCGTTCGGCAAAGCGCAGCAACAG---CAA---CAAAGGCAACACTAAAAATAACA---------------------CCAGCA---GCA-------------------GCAACA---------GCA---------GCAG------CAGCAGCAACA------GCAGCAGCAACAACAAC-------------------------------C-AAGCGGCGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGACCG------------CCCCGGCAGCA---------------ACAA--CAA---CAA--CCATTCGCG----TCGCAGCAGCGCC---AGC------AACAACAATAAA---TAGCAAAA------------A-------CTGAGCAGCGTTCGGCAAAGCGCAGCAACAG---CAA---CAAAGGCAACACTTAAAATAACA---------------------GCAACA---------GAAACGCCAA----TTGTCACA---GCAACTGCAA------------------------------------CAGCAGCAACAACAAC-------------------------------C-AAGAGGCGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGACCG------------CCCCGCCAGCA---------------ACAA--CAA---AAA--GCATTCGCG----TCGCAGCAGCGCC---AGC------AACAACAACAAA---TAGCAAAA------------A-------CTGAGCAGCGTTCGGCAAAGCGCAGCAACAG---CCA---CAAAGGCAACACTGAAGATAACA---------------------GCAGCA---------GCGATACCGA----TTGCAACT---------GCAACAGCAACAGCAGCAGCAGCAACAAC---AGCAGCAGCGGTAGCAACAGCAAG-------------------------------C-AAGCGGCGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGCCCA--CTAG------CGGCGGCAGCA---------ACAGCAGCAA--CAA---TAA--GCATTCCCG----TCGCAGCAGTGCC---AGC------AACAATAACA-A---TAGCAAAA------------A-------CTGAGCAGCGTTCGGCAAAGCGCAGCAAC------AA---CCAAGGCAACACTAAAAACAACA---------------------ATAACA---ACAGC---AGCA----------GCAACG---------GCAATAGCA---------------GCAGC---A-------CAACAACAACAACAAC-------------------------------G-TTGCAGTCG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CAACAA------------CAACAGCAGCA---------GCAGCAGCCACCCAA---CAT--GCATCATCA----TC--------ATC---AGC------AGCAGCAGCA----TCAACAACATCAACAGCAGCAG-------C--AGCAGCAT-----------CAGCAACAT---------CAACAGCAGCAGCAACAACAGCA---------------------GCAGCA---GC------AGCAACAT----ATGCAACA---------GCAGCAGCA---G---------CAACAAC---AACAGCAGCAGCAGCAGCAACATC-------------------------------C-CAGCATTGG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................................................................AACA---------GCAGCAGCA---G---------CAACAAC---A.................................................................	22	20	1.05	21	11	0	0	0	0	10
...........................................................................................................................................................................AT---------CAACAGCAGCAGCAACAACAGC......................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
....................ACAGCAGCA---------GCAGCAGCCACCCA..............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................GCAACAT---------CAACAGCAGCAGCAACAACAGC......................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
..................................................................................................................CAACAACATCAACAGCAGCAG-------C--AGCAGC...........................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................CAT-----------CAGCAACAT---------CAACAGCAGCAGC...............................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................CAT-----------CAGCAACAT---------CAACAGCAGCAGCAACA...........................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAACATC-------------------------------C-CAGC.....	25	1	1.00	1	0	1	0	0	0	0
......................................................................................................AGCAGCA----TCAACAACATCAACAGCA...............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
...................................................................................................................AACAACATCAACAGCAGCAG-------C--AGC..............................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................AT-----------CAGCAACAT---------CAACAGCA....................................................................................................................................................................................	19	2	0.50	1	0	0	1	0	0	0
.............................................................GCATCATCA----TC--------ATC---AGC------AGC............................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0
................................................................................................................................................................................................AGCAACAACAGCA---------------------GCAGC...........................................................................................................................................	18	20	0.25	5	0	5	0	0	0	0
..............................................................................................................................................................................................GCAGCAACAACAGCA---------------------GCAGC...........................................................................................................................................	20	20	0.25	5	0	5	0	0	0	0
...........................................................................................................................CAACAGCAGCAG-------C--AGCAGCAT-----------CAGC..........................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0
..............................................................................................................................................................................................GCAGCAACAACAGCA---------------------GCAGCA---GC------...............................................................................................................................	23	20	0.20	4	0	4	0	0	0	0
..............................................................CATCATCA----TC--------ATC---AGC------AGCAGCAGC......................................................................................................................................................................................................................................................................	25	6	0.17	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................A---G---------CAACAAC---AACAGCAGCA........................................................	19	20	0.15	3	0	3	0	0	0	0
................................................................................................................................................................................................AGCAACAACAGCA---------------------GCAGCA---GC------...............................................................................................................................	21	20	0.15	3	0	3	0	0	0	0
.....................................................................................................................................................................................................CAACAGCA---------------------GCAGCA---GC------AGC............................................................................................................................	19	20	0.15	3	0	3	0	0	0	0
..........................................................................................................................TCAACAGCAGCAG-------C--AGCAGCA..........................................................................................................................................................................................................................	21	14	0.14	2	0	0	0	0	0	2
............................................................................................................................................................................................................................................................................................G---------CAACAAC---AACAGCAGCAGCA.....................................................	21	20	0.10	2	0	2	0	0	0	0
....................................................................................................................................................................................................ACAACAGCA---------------------GCAGCA---GC------AGC............................................................................................................................	20	20	0.10	2	0	2	0	0	0	0
.................................................................................................................................................................................................GCAACAACAGCA---------------------GCAGCA---GC------AGC............................................................................................................................	23	20	0.10	2	0	2	0	0	0	0
....AA------------CAACAGCAGCA---------GCAGCAGC....................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0
.............................................................................................................................ACAGCAGCAG-------C--AGCAGCAT-----------CA............................................................................................................................................................................................................	21	10	0.10	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................AAC---AACAGCAGCAGCAGCAGC................................................	21	20	0.10	2	0	2	0	0	0	0
...................................................................TCA----TC--------ATC---AGC------AGCAGCAGCA----.................................................................................................................................................................................................................................................................	21	10	0.10	1	1	0	0	0	0	0
.........................................................................................................................ATCAACAGCAGCAG-------C--AGCAGCA..........................................................................................................................................................................................................................	22	12	0.08	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................GCAGCA---G---------CAACAAC---AACAGCAGCAGCAGC...................................................	29	17	0.06	1	0	1	0	0	0	0
..........................................................................................................................TCAACAGCAGCAG-------C--AGCAGC...........................................................................................................................................................................................................................	20	17	0.06	1	0	1	0	0	0	0
........................................................................................................................CATCAACAGCAGCAG-------C--AGCA.............................................................................................................................................................................................................................	20	17	0.06	1	0	0	0	0	1	0
...........................................................................................................................................................................AT---------CAACAGCAGCAGCAACA...........................................................................................................................................................................	19	19	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................ACA---------GCAGCAGCA---G---------CAACAAC---AACA..............................................................	24	19	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................CAACAAC---AACAGCAGCAGCAGC...................................................	22	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................AC---AACAGCAGCAGCAGCAGCAACA............................................	24	20	0.05	1	0	0	0	0	0	1
.AACAA------------CAACAGCAGCA---------GCAGCA......................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1
................................................................................................................................................................................................AGCAACAACAGCA---------------------GCAGCA---GC------AGCA...........................................................................................................................	25	20	0.05	1	0	0	1	0	0	0
................................................................................................................................................................................................AGCAACAACAGCA---------------------GCAGCA---GC------AGC............................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
........................................................................................................................................................................................ACAGCAGCAGCAACAACAGCA---------------------................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................AACA---------GCAGCAGCA---G---------CAACA.......................................................................	19	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................CAACAGCAGCAGCAACAACAGCA---------------------GCA.............................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................GCAACA---------GCAGCAGCA---G---------CAACAAC---..................................................................	23	20	0.05	1	0	0	0	0	0	1
................................................................................................................................GCAGCAG-------C--AGCAGCAT-----------CAGCA.........................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................GCAGCAACAACAGCA---------------------GCAGCA---.......................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................ACA---------GCAGCAGCA---G---------CAACAA......................................................................	19	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................GCAACAACAGCA---------------------GCAGCA---GC------...............................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAACATC-------------------------------...........	20	20	0.05	1	0	0	0	0	0	1
..ACAA------------CAACAGCAGCA---------GCAG........................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................A---------GCAGCAGCA---G---------CAACAAC---AACAG.............................................................	23	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................AGCAGCA---G---------CAACAAC---AACAGCAGCAGC......................................................	27	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................ACAACAGCA---------------------GCAGCA---GC------AG.............................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................AACAAC---AACAGCAGCAGCAGCAGC................................................	24	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................................................AGCAGCAACAACAGCA---------------------GCAGC...........................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
....................................................................CA----TC--------ATC---AGC------AGCAGCAGCA----.................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................AGCAGCAGCAACAACAGCA---------------------GCAGC...........................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................AACAAC---AACAGCAGCAGCAGCA..................................................	22	20	0.05	1	0	0	0	0	0	1
...............................................................................................................................................................................................CAGCAACAACAGCA---------------------GCAGCA---GC------AGCA...........................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................GCAGCA---G---------CAACAAC---AACAGCAGC.........................................................	23	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................AC---AACAGCAGCAGCAGCAGCA...............................................	21	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................AACA---------GCAGCAGCA---G---------CAACAAC---AA................................................................	23	20	0.05	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................G---------CAACAAC---AACAGCAGCAGCAGC...................................................	23	20	0.05	1	0	1	0	0	0	0
.AACAA------------CAACAGCAGCA---------GCAGCAGC....................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................ACAACAGCA---------------------GCAGCA---GC------AGCAACA........................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
..................................................................................................................................AGCAG-------C--AGCAGCAT-----------CAGCA.........................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................CA---G---------CAACAAC---AACAGCAGCAGC......................................................	22	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................GCAGCAGCA---G---------CAACAAC---AACAGCA...........................................................	24	20	0.05	1	0	1	0	0	0	0
.....................................................................A----TC--------ATC---AGC------AGCAGCAGC......................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
..ACAA------------CAACAGCAGCA---------GCA.........................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................AGCAGCA---G---------CAACAAC---AACAGC............................................................	21	20	0.05	1	0	0	0	0	0	1
.........................................................................................................................ATCAACAGCAGCAG-------C--AGC..............................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................AGCAGCAGCAACAACAGCA---------------------GCAGCA---.......................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................ACAAC---AACAGCAGCAGCAGC...................................................	20	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................AGCAGCA---G---------CAACAAC---AACA..............................................................	19	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................CAACAACAGCA---------------------GCAGCA---GC------AGC............................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................CAACAGCAGCAGCAACAACAGCA---------------------................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................C---AACAGCAGCAGCAGCAGCAACA............................................	23	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................CAACAGCA---------------------GCAGCA---GC------AGCAACA........................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
............................................................................................................................AACAGCAGCAG-------C--AGCAGCA..........................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0

droBip1

AAGT-AGAAATGCGACGGCTGCAGCAGCA---------------GCAG--CAACAGCAG--------TAT----CAGCAGCTGCAGCAGCATCAACAACTGCAGC---A-GCATCAACAACAGCAA---------------------CAGC----ATCAA-CAACAGCAGCAGCATCAA---CAACAGCAGCATCAACAACAGCA---------------------ACAGCA---TCAGCA---ACT---G----CAGCAGC---------------ATCAGCAACAG------CAACAGC---A---TCAACATCAGCAGCAT----------------------------------CAACAACAGCAG	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGGCGA------------T-CCAGCAGCATCACCAGCATCTCCAGCAG--CAA---CATCATCATCAGCAGCAGCATCAGGCGCAGCAGCAGGCACAGCAACAGCAGCA----------GCA------------ACAGCAGGCTCAGCAGC--------AGGCTCAGCAACAG---CAA---CAACAACAGCAGCAACAACAGCA---------------------ACAACAACAGCAACA---ACA---G----CAGCAACA---------GCAGCA------GCAG------CAGCAGC---A---ACAACAACAGCAGCAA----------------------------------CAGAAGCTAAAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................................................................................................................................................................................................GCAGC---A---ACAACAACAGCAGCAA----------------------------------CAGAAG......	28	1	2.00	2	0	0	0	0	0	0	0	2	0	0
....................................................................................................................................................AGC--------AGGCTCAGCAACAG---CAA---C...........................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................AGGCTCAGCAACAG---CAA---CAA.........................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................GC--------AGGCTCAGCAACAG---CAA---CAACA.......................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................GC--------AGGCTCAGCAACAG---CAA---CAACAAC.....................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................GC--------AGGCTCAGCAACAG---CAA---CA..........................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................CAGCAGGCTCAGCAGC--------AGGCTCAGCAAC.......................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................GC--------AGGCTCAGCAACAG---CAA---CAAC........................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................A----------GCA------------ACAGCAGGCTCAGCAG............................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................AGCATCTCCAGCAG--CAA---CA........................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................CA------------ACAGCAGGCTCAGCAGC--------AGG................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................AGCAACAGCAGCA----------GCA------------ACAGCAGGC...................................................................................................................................................................................................................................	25	2	0.50	1	0	0	1	0	0	0	0	0	0	0
.................................................................CAGCAGCAGCATCAGGCGCAG............................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................CAGGCACAGCAACAGCAGCA----------G..........................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................CAACAGCAACA---ACA---G----CAGCAACA---------GCAG..............................................................................................	27	6	0.50	3	0	0	0	0	0	0	0	3	0	0
........................................................................................................................CA------------ACAGCAGGCTCAGCAGC--------A..................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................CAACAACAGCA---------------------ACAACAACA.......................................................................................................................................	20	20	0.35	7	0	7	0	0	0	0	0	0	0	0
..........................................CAGCAG--CAA---CATCATCATCAGCA............................................................................................................................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...........................................AGCAG--CAA---CATCATCATCAGC.............................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................CACAGCAACAGCAGCA----------GCA------------ACA.........................................................................................................................................................................................................................................	22	9	0.11	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................CAACAG---CAA---CAACAACAGCAGCAAC............................................................................................................................................................................	25	10	0.10	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................AACAACAGCAACA---ACA---G----CAGCAAC............................................................................................................	24	11	0.09	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................ACA---ACA---G----CAGCAACA---------GCAGCA------GCAG------............................................................................	25	11	0.09	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................CAG------CAGCAGC---A---ACAACAACAGCAGCAA----------------------------------C...........	28	11	0.09	1	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................G------CAGCAGC---A---ACAACAACAGCAGCAA----------------------------------C...........	26	12	0.08	1	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................GCA---------------------ACAACAACAGCAACA---ACA---G----CAGC...............................................................................................................	26	13	0.08	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CAGC---A---ACAACAACAGCAGCAA----------------------------------CAG.........	24	13	0.08	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................G---CAA---CAACAACAGCAGCAACAAC.........................................................................................................................................................................	23	16	0.06	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................A---------------------ACAACAACAGCAACA---ACA---G----CAGCA..............................................................................................................	25	16	0.06	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................G----CAGCAACA---------GCAGCA------GCAG------CAGCAGC---A---AC............................................................	29	19	0.05	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................CAACAGCAACA---ACA---G----CAGC...............................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CAACAACAGCAGCAACAACA........................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................ACA---G----CAGCAACA---------GCAGCA------......................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................CAG---CAA---CAACAACAGCAGCAACAAA.........................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.................................................................................................GCAACAGCAGCA----------GCA------------ACAGCA......................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................AGCAACAGCAGCA----------GCA------------ACAGCA......................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................................................................AACAACAGCAGCAACAACAGC......................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................CAACAACAGCAGCAACAACAGCA---------------------................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................GCAGC---A---ACAACAACAGCAGC................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................AACA---ACA---G----CAGCAACA---------GCAGCA------......................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................A---CAACAACAGCAGCAACAACA........................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CAACAACAGCAACA---ACA---G----CAGC...............................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0

droPer2

CAGCAG------------CAACAGCAGCA---------GCAGCAGCAA--CAG---CA--------GCAG-CAGCAACAGCAGCAGCAGCAGCAACAGAAGCAG----------CAGCAGCA------------ACAGCAGCAACAGCAG-------CAG-TAACAGCAGCAG---CAG---CAACAGCAGCAGCAGCAACAGCA---------------------GCAGCA---AC------AGCAACAG----AAGCAGCA---------GCAGCAGCA---G---------CA---------------ACAGCAACAGCAACAG----------------------------------CAGCAGCAG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................................AGCAGCAGCAGCAGCAACAGAA..............................................................................................................................................................................................................................................................................	22	17	0.06	1	0	0	1	0	0	0
....................................................................................................................GCAGCA------------ACAGCAGCAACAGCAG-------C....................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
............................................................................ACAGCAGCAGCAGCAGCAACAG................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
...................................................................................................AGCAG----------CAGCAGCA------------ACAGCAGCA...................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0
...................................................................................................................................................................................................AGCAACAGCA---------------------GCAGCA---AC------...............................................................................................................................	18	20	0.05	1	0	0	1	0	0	0
.........................................................................................................................................................................GCAG---CAG---CAACAGCAGCAGCAGC............................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................CAGCA---------GCAGCAGCA---G---------CA---------------ACAGCAAC...................................................	25	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................................CAGCAGCAGCAACAGCA---------------------GC..............................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
....................ACAGCAGCA---------GCAGCAGCAA--CAG---..........................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
..............................................AA--CAG---CA--------GCAG-CAGCAACA...................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
...............................................A--CAG---CA--------GCAG-CAGCAACAGCAGC..............................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................ACAGCAGCAG---CAG---CAACAGCAGC..................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................CAG---CAACAGCAGCAGCAGCAACA........................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
................................................................................CAGCAGCAGCAGCAACAGA...............................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
.........................................GCAGCAA--CAG---CA--------GCAG-CAGC.......................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................ACAGCAGCAGCAGCAACAGCA---------------------GC..............................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................AACAGCAGCAG---CAG---CAACAGCA....................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0
.......................................................................................................G----------CAGCAGCA------------ACAGCAGCA...................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0
...........................................AGCAA--CAG---CA--------GCAG-CAGCAA.....................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0
.......................................................................................................................................................................................AACAGCAGCAGCAGCAACAGCA---------------------................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0
..............................................AA--CAG---CA--------GCAG-CAGCAACAGCA................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0
......................................GCAGCAGCAA--CAG---CA--------GCAG-CAGC.......................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................CAGCAG---CAG---CAACAGCAGC..................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
........................................................CA--------GCAG-CAGCAACAGCAGC..............................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
.................................................................................................................................................................................AG---CAACAGCAGCAGCAGCAACAGCA---------------------................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0
...........................................AGCAA--CAG---CA--------GCAG-CAGCAACAGCA................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0

droWil2

AGAGC--------------------AG------CAACAACAACAACAA--CAA---CAG--CAATTCGCG----TCGCCACAGCGCCAGCAAT------AACAACAATAAA---TAGCAAAA------------A-------CTGAGCAGCGTTCGGCAAAGCGCACCAACAA---CAG---TAACAGCAACAGTAACAACAACA---------------------ACAACA------------ACGCGAAATAAACGTAGCCGCAGCCGCTG---------------------CAG---------------CAGCGTTGGCAG----------------------------------CGACGCCAGCAG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

AGC-AG------------CAGCAGCAACAAGAGCAGCAGCAGCAGCAA--CAA---GAGCAGCAGCAGCA------GCAACAAGAGCAGCAGC------AGCAGC---A-ACAACAAGAGCAGCAG------------------CAGCAGCAA----C-AAGAGCGGCAGCAG---CAA---CAATGACAGCAGCAGCAAAAGCA---------------------ACAGCAATAGCAAT---GGCG----------GCAAGA---------GCAGCAGCA---GCAG------CAGCAAT---A---GCAGCAAGAGCAGCAG----------------------------------CAGCAGTGGCAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................................................................................................................................................................................................CAAT---A---GCAGCAAGAGCAGCAG----------------------------------CA..........	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................GCAG------CAGCAAT---A---GCAGCAAGA.....................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................GC---A-ACAACAAGAGCAGCAG------------------CAGC..............................................................................................................................................................................................................................	23	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................AGC---A-ACAACAAGAGCAGCAG------------------CAGCA.............................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................AGC---A-ACAACAAGAGCAGCAG------------------C.................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................AGC---A-ACAACAAGAGCAGCAG------------------CA................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................AG---CAA---CAATGACAGCAGCAGCA...........................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................GCAG---CAA---CAATGACAGCAGC...............................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GCAGCAACAAGAGCAGCAGCAGCAGCA...................................................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................GCA------GCAACAAGAGCAGCAGC------AGCAGC---A-....................................................................................................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................GCAGCAA--CAA---GAGCAGCAGCAGCA------GCA...................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................GCAGC---A-ACAACAAGAGCAG.......................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................AGCAGCAGCAAAAGCA---------------------ACAGCA..........................................................................................................................................	22	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................ACAACAAGAGCAGCAG------------------CAGCAGCA..........................................................................................................................................................................................................................	24	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................AGCAA--CAA---GAGCAGCAGCAGCA------......................................................................................................................................................................................................................................................................................................	22	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AGCAACAAGAGCAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................	22	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................GCAGCAGCA---GCAG------CAGCAAT---A---GCAG..........................................................	25	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................ACAGCAGCAGCAAAAGCA---------------------ACA.............................................................................................................................................	21	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................A------GCAACAAGAGCAGCAGC------AGCA...........................................................................................................................................................................................................................................................................	22	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................ACAACAAGAGCAGCAG------------------CAGC..............................................................................................................................................................................................................................	20	13	0.15	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................AGAGCAGCAGC------AGCAGC---A-ACA.................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................A---GAGCAGCAGCAGCA------GCAACA................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................AGAGCAGCAG------------------CAGCAGCAA----C-A..................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AGAGCAGCAGCAGCAGCAA--CA..............................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GCAACAAGAGCAGCAGCAGCAGC....................................................................................................................................................................................................................................................................................................................................	23	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................G----------GCAAGA---------GCAGCAGCA---GC....................................................................................	18	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GCAACAAGAGCAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................	21	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................GCAA--CAA---GAGCAGCAGCAGCA------......................................................................................................................................................................................................................................................................................................	21	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................GCAACAAGAGCAGCAGC------AGCAGC---......................................................................................................................................................................................................................................................................	23	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................A---------GCAGCAGCA---GCAG------CAGCAAT---A---GCA...........................................................	25	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................GCAA--CAA---GAGCAGCAGCAGCA------GC....................................................................................................................................................................................................................................................................................................	23	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................GCAACAAGAGCAGCAGC------AGCA...........................................................................................................................................................................................................................................................................	21	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................C------AGCAGC---A-ACAACAAGAGCA........................................................................................................................................................................................................................................................	20	9	0.11	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................GAGCAGCAGC------AGCAGC---A-ACA.................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................AAGAGCAGCAGCAGCAGC....................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GAGCAGCAGCAGCAGCAA--CA..............................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................ACAAGAGCAGCAGC------AGCAGC---......................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................ACAAGAGCAGCAG------------------CAGCAGC...........................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................AAGAGCAGCAG------------------CAGCAGC...........................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................GAGCAGCAG------------------CAGCAGCAA----C-A..................................................................................................................................................................................................................	20	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................A--CAA---GAGCAGCAGCAGCA------GC....................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................GAGCAGCAGCAGCA------GCAACA................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................ACAAGAGCAGCAGCAGCAGC....................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................CAGCAGCA---GCAG------CAGCAAT---A---GC............................................................	22	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................A---GCAGCAAGAGCAGCAG----------------------------------C...........	18	15	0.07	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................CAA--CAA---GAGCAGCAGCAGCA------GC....................................................................................................................................................................................................................................................................................................	22	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................CAACAAGAGCAGCAG------------------CAGCAGC...........................................................................................................................................................................................................................	22	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................CAACAAGAGCAGCAGC------AGCAGC---......................................................................................................................................................................................................................................................................	22	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CAACAAGAGCAGCAGCAGCAGC....................................................................................................................................................................................................................................................................................................................................	22	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CAA---GAGCAGCAGCAGCA------GCA...................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................ACAACAAGAGCAGCAG------------------CA................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................CAAGA---------GCAGCAGCA---GCAG------CA..........................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AGAGCAGCAGCAGCAGCAA--................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................AAGAGCAGCAGCAGCAGCA...................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................AGA---------GCAGCAGCA---GCAG------CAGC........................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................CAACAAGAGCAGCAGC------AG.............................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................C---A-ACAACAAGAGCAGCAG------------------C.................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................GCAGCAG------------------CAGCAGCAA----C-AAG................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................AAGAGCAGCAG------------------CAGCAGCA..........................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CAGCAGCAGCAAAAGCA---------------------ACA.............................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................AA---GAGCAGCAGCAGCA------GCA...................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................CAA--CAA---GAGCAGCAGCAG..............................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CAAGAGCAGCAGCAGCAGCA...................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CAACAAGAGCAGCAGCAG........................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................A---GAGCAGCAGCAGCA------GCAA..................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................CAAGAGCAGCAGC------AGCAGC---A-....................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................AGAGCAGCAG------------------CAGCAGCAA----.....................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GCAGCAGCAGCAGCAA--CAA---G.........................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................GC------AGCAGC---A-ACAACAAGAGCT........................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................AGAGCAGCAGC------AGCAGC---A-A...................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................CAAGAGCAGCAG------------------CAGCAGCA..........................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................AGCAGCAGCAAAAGCA---------------------AC..............................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................CAACAAGAGCAGCAG------------------CAG...............................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AAC-AACAG---------CAGCAGCAGCA---GTAGCAGCAGCAGCAG--CAG---CAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGC------AACAACAGCA-G---CAGCAGCA------------ACAG----C--AGCAGCAG-CAGCAA-CAGCAGCAGCAG---CAG---CAACAGCAGCAGCAGCAGCAACA---------------------GCAGTAGCAGCAGCA---GCA-------------ACA---------GCAGCAGCAGCAACAG------CGGCAGC---A---GCAGCAACAGCAACAG----------------------------------CAGCAGCAGCAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................................................................GCAGCAG-CAGCAA-CAGCAGCAGC.......................................................................................................................................................................................................	23	20	0.10	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................................................................CAGCAGCAACAG------CGGCAGC---A---GC............................................................	22	13	0.08	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................AGCAACAG------CGGCAGC---A---GCAGCA........................................................	22	14	0.07	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................CAGCAACAG------CGGCAGC---A---GCAGC.........................................................	22	18	0.06	1	0	0	0	0	1	0
......................................................................................CAGCAGC------AACAACAGCA-G---CAGCAGC.........................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
.................................................................................................................................................................................AG---CAACAGCAGCAGCAGCAGCAACA---------------------GC..............................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................AACAGCAACAG----------------------------------CAGCAGCAGCA.	22	20	0.05	1	0	0	0	0	1	0
.............................................................................CAGCAGCAGCAGCAGC------AACA...........................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................CAGCA------------ACAG----C--AGCAGCAG-CA......................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................AGCAACAG------CGGCAGC---A---GCAGC.........................................................	21	20	0.05	1	0	0	1	0	0	0
......................................................................................................AACAGCA-G---CAGCAGCA------------ACAG----C--AGCAGCA..........................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
..................................................................................GCAGCAGCAGC------AACAACAGCA-G---CA..............................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................GCA-------------ACA---------GCAGCAGCAGCAACA...................................................................................	21	20	0.05	1	1	0	0	0	0	0
......................................................................................................................AGCA------------ACAG----C--AGCAGCAG-CAGCAA-CAGC.............................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................AGCAA-CAGCAGCAGCAG---CAG---CAACAGC.....................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
............................................................................................................A-G---CAGCAGCA------------ACAG----C--AGCAGCA..........................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.......................................................................................AGCAGC------AACAACAGCA-G---CAGCAGCA------------ACA.........................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	1	0
...................................GCAGCAGCAGCAG--CAG---CAGCAGCAGT................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.........................................GCAGCAG--CAG---CAGCAGCAGTAGCAGCAGC.......................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	1	0

droGri2

AGC-AG------------CAGCAGCAGCAGCAGCAGCAGCGGCAGCAG--CAG---CAG--CAGCAGGAG----CGGCAGCAGCAGCAGCAGC------AGCAGCAGCA-G---CAGCAGCAGCAG------------------TAGCAGCAT-CAGCAGC-GGCAGCAGCAG---CAG---CAGCGGCAGCAGCAGCAGCAGCA---------------------GCGGCAGCAGCAGCA---GCA-------------GCA---------GCGGCAGCAGCAGCAG------CAGCAGC---A---GCAGCAGCGGCAGCAG----------------------------------CAGCAGCGGCAG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..........................................................................................AGC------AGCAGCAGCA-G---CAGCAGCAGCA.....................................................................................................................................................................................................................................................	25	20	0.10	2	2	0
....................................................................................................................................................................CAGCAGCAG---CAG---CAGCGGCA....................................................................................................................................................................................	20	20	0.05	1	0	1

dsi_5567

x:9977576-9977698 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-18.5	-18.4	-18.3