ID:

dsi_5563

 Coordinate:

3r:8923885-8924034 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.9 -15.9 -15.8

Flybase annnotation

CDS [3r_8924035_8924367_+]; exon [3r_8924035_8924367_+]; intron [3r_8923490_8924034_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATAAAGACAGTAATCGGTTGGTCTGATCAATCCGAAGCCAGCAAAAAACTACATATATATGTATATATTTTGAAAAGTTTATCGTGTATTGATTATTGCAAAATTTTCTTTGAAGAGAAAAGATTTTTAAAGCTATTTAACGGTCTCCGATTTTAATATTATTAACTACTTACTAAAGATGTGAATCTACTTTTTTTTAGTTGCTCGCGAGGATCACAGTCAAAACGACTGCTTTGTGTTGGCGGTAATG
**************************************************((((....)))).((((((((...((((.......(((((((..((((.....(((((((....)))))))((((.(((((....))))).))))..)))).)))))))........))))....)))))))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 M024
male body		 M025
embryo
 M053
female body
 GSM343915
embryo
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.................................................................................................................................................................................................................................CGACTGCTTTGTGTTGGC....... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................................................................................TTCTTTGAAGAGAAAAGATTTT........................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GGTTGCTCGCGAGGATCACAGTC............................. 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................GCTTTGTGTTGGCGGTAAT. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................TTCTTTGAAGAGAAAAGA............................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGTCAAAACGACTGCTTTGTGTTGGCGGT.... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................GATCACGACGATCACAGTCAA........................... 21 3 2 0.50 1 0 0 0 0 0 1 0 0 0
........................................................................................................TTTCTATGAAGAGAA................................................................................................................................... 15 1 19 0.05 1 0 0 0 0 0 0 1 0 0
................................................................................................................AAGAGAAAACACTTTTAAA....................................................................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 1 0
........................GATCAATCTGAAGCCC.................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TATTTCTGTCATTAGCCAACCAGACTAGTTAGGCTTCGGTCGTTTTTTGATGTATATATACATATATAAAACTTTTCAAATAGCACATAACTAATAACGTTTTAAAAGAAACTTCTCTTTTCTAAAAATTTCGATAAATTGCCAGAGGCTAAAATTATAATAATTGATGAATGATTTCTACACTTAGATGAAAAAAAATCAACGAGCGCTCCTAGTGTCAGTTTTGCTGACGAAACACAACCGCCATTAC
**************************************************((((....)))).((((((((...((((.......(((((((..((((.....(((((((....)))))))((((.(((((....))))).))))..)))).)))))))........))))....)))))))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M024
male body
..............................AGGCTTCGGTCGTTTCT........................................................................................................................................................................................................... 17 1 3 1.00 3 3 0 0 0 0
.....................................GGTCGTGTTTTGATGT..................................................................................................................................................................................................... 16 1 4 0.25 1 0 1 0 0 0
..................................................................................................................................................................ATTGATGAGTGATTTC........................................................................ 16 1 5 0.20 1 0 0 1 0 0
...........................................................................................TAAAAAAGTTTCAAAAGAAACT......................................................................................................................................... 22 3 19 0.05 1 0 0 0 1 0
..................................................................................................................................................................................................................CCTAGTGTCAGTTATTAT...................... 18 3 20 0.05 1 0 0 0 0 1
......................................................................................................................................................................................................................GTGTCCGTTCTGCTGTCGA................. 19 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:8923835-8924084 + dsi_5563 ATAAA-GACAGTAATCGGTT------G-----GTCTGATCAATCCGAA-GCCAG-C-AAAAAACTACATAT-------AT----------------------------------A---------------------------------TGTATATATTTTGAAAAGTTTATCGTGTATTGATTATTGC----------------------------------------------------------------------------AAA---------ATTTTCTTTGAAG-------AGAAAAGATTT-TTA---------------------------------------AAGCTATTTAAC--------------------GGTCTCCGATTTTAATATTATTA----ACTACT----------------------------------------------------------------------TACTAAAGATGTGA--ATCT-A---C--TTT--TTTTTAGTTGCTCGCGAGGATCACAGTCAAAACGACTGCTTTGTGTTGGCGGTAATG
droSec2 scaffold_12:1821494-1821739 + ATAAA-GACAGTAATCGGTT------G-----GTCTGATCAATCCGAA-GCCAG-C-AAAAAACTA--TAA-------AT----------------------------------A---------------------------------TGTATATA--TTGAAAAGTTTATCGTGCATTGATTATTGT----------------------------------------------------------------------------AAA---------ATTTTATTTGAAG-------AGAAGAGAGTT-TTT---------------------------------------AAGCTATTTCAA--------------------GGTCTCGGATTTTACTATTATTA----ACTACT----------------------------------------------------------------------TACTAAAGCTGCGA--ATCT-A---C--CTC--ATTTCAGTTGCTCGCGAGGATCACAGTCAAAACGACTGCTTTGTGTTGGCGGTGATG
dm3 chr3R:12325768-12326047 - ATAAA-GACAGTAATCTGTT------G-----GTCTGATCAATCCGAA-GGCAG-C-AAAAAAATA--T------------T-T-----------------------------TTTGTTTTGA----GA-AAATAACAA-C--CGT--TTTATATG--TTGAAAATTGTATAGTGCATTGATTATTGG---------------------------------------------AACGC----------------GTCTTTTTGTATA---------GTTTTCTTTGAAG-------AGAAAAGTGTT-TTG---------------------------------------AAGCAA---------------------------GTCTCGATTTTTATTATAATTATTTTTCTACT----------------------------------------------------------------------TACTAAAGATGTGA--ATCT-A---C--TTC--ATTTCAGTTGCTCGGGAGGATCACAGTCAAAACGACTGCTTTGTGTTGGCGGTGATG
droEre2 scaffold_4770:9312862-9313110 + AA-----TCAGTAATCGGAT-------------TTTGACCAATCTAAA-GGCAG-C-AAA-AACTA--CTC-------T----------------------------------TTTG-TTTGA----GC-GAATAACAA-A--CGT--TTCA--------GAAAGATGTATCGTGCAT----TATTGC---------------------------------------------ACCAC--------------------------ATA---------GTTTTCTTTGAAG-ATAGTGAGAAATGAGTT-TAT---------------------------------------AAGTCAGTTCAT--------------------GGTGTCGCTTTTTAATG--------------CT---------------------------------------------------------------------CTACTAAAGATA-----CTCC-----A--CTA--ATTTCAGTTGCTCGCGAGGATCACAGTGAAAACGACTGCTTTGTGCTGGCGGTGATG
droYak3 3R:12068380-12068601 + ATAAA-GACAGTAATCGGTT------------TTTTGATCAATCTAAA-GACAG-C-GAAAAACTA--T------------T-C-----------------------------TTTGTTTTGA----GG-AAATAACAA-A--TCTAATTC----------------------------------------------------------------AATT-----------------------------------ATCTATTTGTATA---------ATTTGCTTTAAAG-------AGAAAAGAGTT--GG---------------------------------------AAGCTAG----------------------------------------------TA----TCTACT---------------------------------------------------------------------CTACTAAATATGTGA--CTTT-A---A--TTC--ATTTCAGTTGCCCGCGAGGATCACAGCCAAAACGACTGCTTTGTGCTGGCGGTGATG
droEug1 scf7180000409557:215604-215915 + ATA-A-GACAGTAATCGGGT------T-----TTCCGATCAACGGGAAAGTCAT-C-CAAAAATGA--T------------TTC-----------------------------TTTATATTAA-A--GAAAATTAACAA-A--GGA------------------------------------------------------TAGGAAAGGAAT----------------------GTTCGATGACTGATAAATCGA-----TTAGATAAT-TTCCCTATTTAAATAAG-AAATA---AAT-ACAAGAATGTT---------------------------------------TAACTATGA-----------CATTAATTTAT----------------------------TAGACTT-TCTAAAAATATATTTCAGC---------TTTAAGATAAGCCCATGAATAATCACTTT----AATACTC-------AAT--ATT---TA-A---A--ACT--TTTTCAGTGGCTCGCGAGGATCACAGTAAAAACGATTGCTTTGTCTTGGCGGTGATG
droBia1 scf7180000299102:259275-259474 - ATAAA-GACAGTAATCGGGT------T-----TTCTGTTCGATCTGAATGTGAG-T-CAAAAAAG------TTGTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAATTTACAAAGAATGTATTATCTTTTGATAAATAATTTCCAGA-AACCCATT---------------------------------------------------T----------------------------------------------------------------------TACTTACAATGTGA--ATCA-ATTATATCTATTCTTGCAGTGGCTCGCGAGGATCACAGTCGGAACGACTGCTTTGTGTTGGCGGTGATG
droTak1 scf7180000415580:355082-355174 + ATATATT-------------------------------------TGACTACGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAACCTA---------------------------------------------------------------------------------------------------------------------ATC---TA-T---A--ATA--ATTCCAGTGGCTCGCGAGGATCACAGTCAGAACGATTGTTTTGTGTTGGCGGTGATG
droEle1 scf7180000490967:592156-592410 - ATAAA-GGCAGTAATCGGTT------A-----TTCTGATCGATCTGAA-GCCAG-G-CAAAAG-TA--CTC-------TAAAT------------------------------TGTA-TTCTAATG--AA-------AA-TAGTGT--TT----------TGGATATATATTTTATGT----T---------------------------------------------ATTTCTCTTCAATGATTGTTAAACGGA-----TAAGATTAAATTTCTTTT------------------------------TTC---------------------------------------CAGGCAATTTAAGGTGCTAACAA--------------------------------------------------------------------------------------------------------TGATTTTA-----------TGT--ATCATACTATTTCTA--TTTACAGTGGCACGCGAGGATCACAGTAAAAACGATTGTTTTGTGCTGGCTGTGATG
droRho1 scf7180000770607:412-714 - ATAAC-GACAGTAATCGGAT------T-----TTCTGATCGATCTT--------------------------------TATTT------------------------------TATA-TTCAAATG--AAAACTA---AACAGTGT--TCC------------A------------------------------------TATGTAATGAATATTCGTGTAGATAATAATTACCCTTCGATGAGTGTTAAACGGA-----TAAGATTATATTTTCTATTGACTTTGTAG-------AGAATGCGGAT-TTC---------------------------------------CAGCTGATTCAA--------------------GGTCT----------------------------AAATAAATCATCAATGCCAATACAAA-------------------------CTGAACTTGAATGATATTA-------TAT--TTTACGCT-G---A--CTA--ATTCCAGTTGCTCGCGAGGATCACAGTGAAAACGATTGCTTTGTGTTGGCGGTGATG
droFic1 scf7180000453796:269570-269915 + ATAAA-GACAGTAATCGGTT------T-----TCCTGATCGATCGGAAAAACAA-GCGAA-AAC-A--TTT-------TATTT------------------------------TTTAATTTAAATGGCA-AAATAACAA-C--AAA------------------------------------------------------TATGTTTGAAAT--------ACAAAATCCCAACGGTTCGTTGACTTTCAAACGGA-----TTAGATAACGTTTGATACTTTCTTAAA-A-------AGTAAGGGGAA-TTT---------------------------------------CAGGTGATT-----------CAGTGAATTCAAGGTCT----------------------------TTACTAAAAATAAAATCCAAGAAGTACCCTTTTTTTATAAGAGAACGAAGTATGTATTTAAATAATATTT-------AAT--TTTTCTCA-A---A--ATA--ATTTCAGTTGCTAAGGAGGATCACAGCCAGAATGATTGCTTTGTGTTGGCGGTGATG
droKik1 scf7180000302475:235292-235487 - ATAAA-GAAAGTAATCGTATTTTGTTGACCTATTCTGATCGATCCGGAATTCTTAC-CAAAAATGG--T------------A--GGACTTACAATGACATTTCTTACTTCTAA--------------CG-AAATTTCAA-A--TAAATATT----------------------------------------------------------------AATA-----------------------------------TAATATATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATAT--TTT--CCTTTAGTTGCCCGCGAGGATCACAGTCTGAACGATTGCTTTGTGCTGGCAGTGATG
droAna3 scaffold_13340:7556935-7557092 + GATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAAAATGATCCGATA---------------------------------------------------------------------------------GTGAAG-------GTAATCGATT--------------------------------------------------------------------------------TCCTATTTC-ACATTAAAA----ACAAAC---------------------------------------------TGCTGTACATTTGCGAATAAGCTTT-------AAC--CTT---TT-T---C--CCC--GTTCCAGTGGCTCTCGAGGATCACAGCCAGAACGATTGCTTCGTCCTGGTGGTCATG
droBip1 scf7180000396708:1291296-1291351 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCAGTGGCGCTCGAGGATCACAGCCAGAATGATTGCTTCGTCCTGGTGGTCATG
dp5 2:5407447-5407502 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAGTGGCACGCGAGGATCATAGCGATAATGATTGCTTCGTTCTCGTTGTCATG
droPer2 scaffold_19:1123638-1123693 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAGTGGCACGCGAGGATCATAGCGATAATGATTGCTTCGTTCTCGTTGTCATG
droWil2 scf2_1100000004902:5314323-5314415 + ATTTA-C-------------------------------------TGAAAATGAA-T-AACCAAAT------TTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-T---T--TCC--ATTTTAGTGGCTCGTGAGGATCACAGTCAAAATGATTCCTTTGTGCTGACGGTCATG
droVir3 scaffold_13047:13742899-13742977 - TGCTT-ATGAGAAATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT-A---T--TTG--GTTGCAGTGGCTCGCGAGGATCACAGCGAAAACGATTGCTTTGTGCTGGTTGTCATG
droMoj3 scaffold_6540:26353391-26353455 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-A---T--TCG--GTTGCAGTGGCACGCGAGGATCACAGTCAAAATGACTGTTTCGCTCTCGTCGTCATG
droGri2 scaffold_14830:6207891-6207970 + TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTAAATATATATA---TA-T---A--TTT--TTTACAGTGGCTCGCGAGGATCACAGTCAAAATGATTGCTTTGTGCTTGTTCTCATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATAAA-GACAGTAATCGGTT------G-----GTCTGATCAATCCGAA-GCCAG-C-AAAAAACTACATAT-------AT----------------------------------A---------------------------------TGTATATATTTTGAAAAGTTTATCGTGTATTGATTATTGC----------------------------------------------------------------------------AAA---------ATTTTCTTTGAAG-------AGAAAAGATTT-TTA---------------------------------------AAGCTATTTAAC--------------------GGTCTCCGATTTTAATATTATTA----ACTACT----------------------------------------------------------------------TACTAAAGATGTGA--ATCT-A---C--TTT--TTTTTAGTTGCTCGCGAGGATCACAGTCAAAACGACTGCTTTGTGTTGGCGGTAATGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTGCTTTGTGTTGGC.......1811.00100010000000000000
.......................................................................................................................................................................................................................................................................................TTCTTTGAAG-------AGAAAAGATTT-T..........................................................................................................................................................................................................................................................................2211.00100001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGTGTTGGCGGTAAT.1911.00101000000000000000
.......................................................................................................................................................................................................................................................................................TTCTTTGAAG-------AGAAAAGA...............................................................................................................................................................................................................................................................................1811.00100001000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAAAACGACTGCTTTGTGTTGGCGGT....2911.00100100000000000000
droSec2
ATAAA-GACAGTAATCGGTT------G-----GTCTGATCAATCCGAA-GCCAG-C-AAAAAACTA--TAA-------AT----------------------------------A---------------------------------TGTATATA--TTGAAAAGTTTATCGTGCATTGATTATTGT----------------------------------------------------------------------------AAA---------ATTTTATTTGAAG-------AGAAGAGAGTT-TTT---------------------------------------AAGCTATTTCAA--------------------GGTCTCGGATTTTACTATTATTA----ACTACT----------------------------------------------------------------------TACTAAAGCTGCGA--ATCT-A---C--CTC--ATTTCAGTTGCTCGCGAGGATCACAGTCAAAACGACTGCTTTGTGTTGGCGGTGATGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACGACTGCTTTGTGTTGGC.......2319.0090261
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGCTTTGTGTTGGCGGT....2017.0070151
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACGACTGCTTTGTGTTGGCGGT....2615.0050140
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACTGCTTTGTGTTGGC.......1913.0031200
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTGCTTTGTGTTGGCGGT....2113.0030120
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACTGCTTTGTGTTGGCGGT....2312.0020011
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACTGCTTTGTGTTGGC.......2012.0020110
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACTGCTTTGTGTTGGCGGT....2212.0020110
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTTTGTGTTGGCGGTGAT.2111.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACGACTGCTTTGTGTTGGC.......2211.0010100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACGACTGCTTTGTGTTGGCG......2311.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGACTGCTTTGTGTTGGCGGTGATG2811.0010100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTTTGTGTTGGCGGTG...1911.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACGACTGCTTTGTGTTGG........2211.0010100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTGCTTTGTGTTGGC.......1811.0010001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACTGCTTTGTGTTGGCG......2011.0010100
dm3
ATAAA-GACAGTAATCTGTT------G-----GTCTGATCAATCCGAA-GGCAG-C-AAAAAAATA--T------------T-T-----------------------------TTTGTTTTGA----GA-AAATAACAA-C--CGT--TTTATATG--TTGAAAATTGTATAGTGCATTGATTATTGG---------------------------------------------AACGC----------------GTCTTTTTGTATA---------GTTTTCTTTGAAG-------AGAAAAGTGTT-TTG---------------------------------------AAGCAA---------------------------GTCTCGATTTTTATTATAATTATTTTTCTACT----------------------------------------------------------------------TACTAAAGATGTGA--ATCT-A---C--TTC--ATTTCAGTTGCTCGGGAGGATCACAGTCAAAACGACTGCTTTGTGTTGGCGGTGATGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACGACTGCTTTGTGTTGGC.......2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000003000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACTGCTTTGTGTTGGC.......2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000
......................................................................................................................................AACAA-C--CGT--TTTATATG--TTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGCTTTGTGTTGGCGGT....2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTGTTGGCGGTGATG1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTTTGTGTTGGCGGT....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACTGCTTTGTGTTGGCGGTGATG2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACGACTGCTTTGTGTTGG........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TGTT-TTG---------------------------------------AAGCAA---------------------------GTCTCGGA........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACTGCTTTGTGTTGGC.......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACGACTGCTTTGTGTT..........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTTGTGTTGGCGGTGATG2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTGCTTTGTGTTGGC.......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.TAAA-GACAGTAATCTGTT------G-----GTCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACGACTGCTTTGTGTTGG........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAACGACTGCTTTGTGTTGGCGGT....2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTTGTGTTGGCGGTGA..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGTCAAAACGACTGCTTTGTGTTGG........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTTTGTGTTGGCGGTGAT.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GTCTGATCAATCCGAA-GG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGTTGGCGGTGATG1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCACAGTCAAAACGACTGCTTTG..............2611.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTCGGGAGGATCACAGTCAAAAC........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGCTTTGTGTTGGCGG.....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTGTTGGCGGTGAT.1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
droEre2
AA-----TCAGTAATCGGAT-------------TTTGACCAATCTAAA-GGCAG-C-AAA-AACTA--CTC-------T----------------------------------TTTG-TTTGA----GC-GAATAACAA-A--CGT--TTCA--------GAAAGATGTATCGTGCAT----TATTGC---------------------------------------------ACCAC--------------------------ATA---------GTTTTCTTTGAAG-ATAGTGAGAAATGAGTT-TAT---------------------------------------AAGTCAGTTCAT--------------------GGTGTCGCTTTTTAATG--------------CT---------------------------------------------------------------------CTACTAAAGATA-----CTCC-----A--CTA--ATTTCAGTTGCTCGCGAGGATCACAGTGAAAACGACTGCTTTGTGCTGGCGGTGATGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTTTGTGCTGGCGGTG...2011.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAACGACTGCTTTGTGCT..........2211.0011000000
.....................................ACCAATCTAAA-GGCAG-C-AAA-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACAGTGAAAACGACTGCTTTGT.............2611.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACAGTGAAAACGACTGCTTTGT.............2511.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACGACTGCTTTGTGC...........1811.0010100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACAGTGAAAACGACTGC..................2011.0010001000
..........GTAATCGGAT-------------TTTGACCAATCTAAA-GGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACAGTGAAAACGACTGCTT................2311.0010000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACTGCTTTGTGCTGGC.......2011.0010010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCACAGTGAAAACGACTGCTTT...............2511.0011000000
................................................................................................................................................GT--TTCA--------GAAAGATGTATCGTGC...............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
droYak3
ATAAA-GACAGTAATCGGTT------------TTTTGATCAATCTAAA-GACAG-C-GAAAAACTA--T------------T-C-----------------------------TTTGTTTTGA----GG-AAATAACAA-A--TCTAATTC----------------------------------------------------------------AATT-----------------------------------ATCTATTTGTATA---------ATTTGCTTTAAAG-------AGAAAAGAGTT--GG---------------------------------------AAGCTAG----------------------------------------------TA----TCTACT---------------------------------------------------------------------CTACTAAATATGTGA--CTTT-A---A--TTC--ATTTCAGTTGCCCGCGAGGATCACAGCCAAAACGACTGCTTTGTGCTGGCGGTGATGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGCTTTGTGCTGGCGGT....2014.00403000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTGCTTTGTGCTGGC.......1813.00302100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACTGCTTTGTGCTGGCGGT....2312.00200000020000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACTGCTTTGTGCTGG........1911.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGGATCACAGCCAAAACGACT....................2411.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCCAAAACGACTGCT.................1911.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACTGCTTTGTGCTGGCGGC....2311.00100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGATCACAGCCAAAAC........................1811.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCGCGAGGATCACAGC..............................1911.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACTGCTTTGTGCTGGC.......2011.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTGCTTTGTGCTGGCGGT....2111.00100010000000
........................................AATCTAAA-GACAG-C-GAAAAACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
droEug1
ATA-A-GACAGTAATCGGGT------T-----TTCCGATCAACGGGAAAGTCAT-C-CAAAAATGA--T------------TTC-----------------------------TTTATATTAA-A--GAAAATTAACAA-A--GGA------------------------------------------------------TAGGAAAGGAAT----------------------GTTCGATGACTGATAAATCGA-----TTAGATAAT-TTCCCTATTTAAATAAG-AAATA---AAT-ACAAGAATGTT---------------------------------------TAACTATGA-----------CATTAATTTAT----------------------------TAGACTT-TCTAAAAATATATTTCAGC---------TTTAAGATAAGCCCATGAATAATCACTTT----AATACTC-------AAT--ATT---TA-A---A--ACT--TTTTCAGTGGCTCGCGAGGATCACAGTAAAAACGATTGCTTTGTCTTGGCGGTGATGSizeHit CountTotal NormTotal
No Reads
droBia1
ATAAA-GACAGTAATCGGGT------T-----TTCTGTTCGATCTGAATGTGAG-T-CAAAAAAG------TTGTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAATTTACAAAGAATGTATTATCTTTTGATAAATAATTTCCAGA-AACCCATT---------------------------------------------------T----------------------------------------------------------------------TACTTACAATGTGA--ATCA-ATTATATCTATTCTTGCAGTGGCTCGCGAGGATCACAGTCGGAACGACTGCTTTGTGTTGGCGGTGATGSizeHit CountTotal NormTotal
No Reads
droTak1
ATATATT-------------------------------------TGACTACGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAACCTA---------------------------------------------------------------------------------------------------------------------ATC---TA-T---A--ATA--ATTCCAGTGGCTCGCGAGGATCACAGTCAGAACGATTGTTTTGTGTTGGCGGTGATGSizeHit CountTotal NormTotal
No Reads
droEle1
ATAAA-GGCAGTAATCGGTT------A-----TTCTGATCGATCTGAA-GCCAG-G-CAAAAG-TA--CTC-------TAAAT------------------------------TGTA-TTCTAATG--AA-------AA-TAGTGT--TT----------TGGATATATATTTTATGT----T---------------------------------------------ATTTCTCTTCAATGATTGTTAAACGGA-----TAAGATTAAATTTCTTTT------------------------------TTC---------------------------------------CAGGCAATTTAAGGTGCTAACAA--------------------------------------------------------------------------------------------------------TGATTTTA-----------TGT--ATCATACTATTTCTA--TTTACAGTGGCACGCGAGGATCACAGTAAAAACGATTGTTTTGTGCTGGCTGTGATGSizeHit CountTotal NormTotal
No Reads
droRho1
ATAAC-GACAGTAATCGGAT------T-----TTCTGATCGATCTT--------------------------------TATTT------------------------------TATA-TTCAAATG--AAAACTA---AACAGTGT--TCC------------A------------------------------------TATGTAATGAATATTCGTGTAGATAATAATTACCCTTCGATGAGTGTTAAACGGA-----TAAGATTATATTTTCTATTGACTTTGTAG-------AGAATGCGGAT-TTC---------------------------------------CAGCTGATTCAA--------------------GGTCT----------------------------AAATAAATCATCAATGCCAATACAAA-------------------------CTGAACTTGAATGATATTA-------TAT--TTTACGCT-G---A--CTA--ATTCCAGTTGCTCGCGAGGATCACAGTGAAAACGATTGCTTTGTGTTGGCGGTGATGSizeHit CountTotal NormTotal
No Reads
droFic1
ATAAA-GACAGTAATCGGTT------T-----TCCTGATCGATCGGAAAAACAA-GCGAA-AAC-A--TTT-------TATTT------------------------------TTTAATTTAAATGGCA-AAATAACAA-C--AAA------------------------------------------------------TATGTTTGAAAT--------ACAAAATCCCAACGGTTCGTTGACTTTCAAACGGA-----TTAGATAACGTTTGATACTTTCTTAAA-A-------AGTAAGGGGAA-TTT---------------------------------------CAGGTGATT-----------CAGTGAATTCAAGGTCT----------------------------TTACTAAAAATAAAATCCAAGAAGTACCCTTTTTTTATAAGAGAACGAAGTATGTATTTAAATAATATTT-------AAT--TTTTCTCA-A---A--ATA--ATTTCAGTTGCTAAGGAGGATCACAGCCAGAATGATTGCTTTGTGTTGGCGGTGATGSizeHit CountTotal NormTotal
No Reads
droKik1
ATAAA-GAAAGTAATCGTATTTTGTTGACCTATTCTGATCGATCCGGAATTCTTAC-CAAAAATGG--T------------A--GGACTTACAATGACATTTCTTACTTCTAA--------------CG-AAATTTCAA-A--TAAATATT----------------------------------------------------------------AATA-----------------------------------TAATATATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATAT--TTT--CCTTTAGTTGCCCGCGAGGATCACAGTCTGAACGATTGCTTTGTGCTGGCAGTGATGSizeHit CountTotal NormTotal
No Reads
droAna3
GATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAAAATGATCCGATA---------------------------------------------------------------------------------GTGAAG-------GTAATCGATT--------------------------------------------------------------------------------TCCTATTTC-ACATTAAAA----ACAAAC---------------------------------------------TGCTGTACATTTGCGAATAAGCTTT-------AAC--CTT---TT-T---C--CCC--GTTCCAGTGGCTCTCGAGGATCACAGCCAGAACGATTGCTTCGTCCTGGTGGTCATGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGATTGCTTCGTCCTGGTGGT....2311.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCAGAACGATTGCTTCGT.............2111.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTTCGTCCTGGTGGTC...1911.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATTGCTTCGTCCTGGTGGTC...2311.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGATCACAGCCAGAAC........................1911.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATTGCTTCGTCCTGGTGGTCAT.2511.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAGGATCACAGCCAGA..........................1911.001001000
droBip1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCAGTGGCGCTCGAGGATCACAGCCAGAATGATTGCTTCGTCCTGGTGGTCATGSizeHit CountTotal NormTotal
No Reads
dp5
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAGTGGCACGCGAGGATCATAGCGATAATGATTGCTTCGTTCTCGTTGTCATGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATGATTGCTTCGTTCTCGTTGTC...27112.001201100100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATGATTGCTTCGTTCT..........2018.0081510001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCGTTCTCGTTGTC...2013.0030300000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTTCGTTCTCGTTGTC...2113.0030300000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTTCGTTCTCGTTGTC...1912.0020200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATTGCTTCGTTCTCGTTGTC...2412.0020200000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGATTGCTTCGTTCTCGTTGTC...2512.0020200000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCGAGGATCATAGCGATAAT........................2211.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTGCTTCGTTCTCGTTGTC...2311.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGATTGCTTCGTTCTCGT.......2111.0010010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCACGCGAGGATCATAGC..............................2111.0010010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTTCGTTCTCGTTGTCA..2211.0010100000000
droPer2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAGTGGCACGCGAGGATCATAGCGATAATGATTGCTTCGTTCTCGTTGTCATGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATGATTGCTTCGTTCT..........2018.008800000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATGATTGCTTCGTTCTC.........2116.006600000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATGATTGCTTCGTTCTCGTTGTC...2713.003030000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTTCGTTCTCGTTGTC...2112.002020000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGATTGCTTCGTTCTCGTT......2212.002200000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGATTGCTTCGTTCTCGTT......2312.002110000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTGCTTCGTTCTCGTTGTC...2211.001001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCGATAATGATTGCTTCGTT............2311.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATGATTGCTTCGTTCTCGTTC.....2511.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGATTGCTTCGTTCT..........1811.001100000
droWil2
ATTTA-C-------------------------------------TGAAAATGAA-T-AACCAAAT------TTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-T---T--TCC--ATTTTAGTGGCTCGTGAGGATCACAGTCAAAATGATTCCTTTGTGCTGACGGTCATGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATTCCTTTGTGCTGACGGTC...2411.00101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTTTGTGCTGACGGTCATG2411.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGATTCCTTTGTGCTGACGGTC...2611.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTTTGTGCTGACGGTCATG2211.00101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGATCACAGTCAAAATG.......................1911.00100100
droVir3
TGCTT-ATGAGAAATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT-A---T--TTG--GTTGCAGTGGCTCGCGAGGATCACAGCGAAAACGATTGCTTTGTGCTGGTTGTCATGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTTTGTGCTGGTTGTC...1912.002000000000200000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACGATTGCTTTGTGCTGGTTGT....2611.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGATCACAGCGAAAACGAT.....................2111.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTTGTGCTGGTTGTC...2011.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTCGCGAGGATCACAGCGAAAA.........................2511.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCGCGAGGATCACAGC..............................1911.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGATTGCTTTGTGCTGGTTGG....2411.001010000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCGCGAGGATCACAGC..............................2111.001000000000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCGCGAGGATCACAGCGAA...........................2211.001000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTTTGTGCTGGTTGT....2011.001000000000100000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCGCGAGGATCAC.................................1811.001000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGGATCACAGCGAAAACGATTGCTT................2811.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTTTGTGCTGGTTGTC...2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAAAACGATTGCTTTGTGCTGGTT......2611.001000000000000000000000100000000000000000000000000000000000000000
droMoj3
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-A---T--TCG--GTTGCAGTGGCACGCGAGGATCACAGTCAAAATGACTGTTTCGCTCTCGTCGTCATGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAATGACTGTTTCGCTCTCGTCGT....2612.002200000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAATGACTGTTTCGCTCTC.........2111.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAATGACTGTTTCGCTCTCGTCGTC...2711.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGACTGTTTCGCTCTCGTC......2211.001100000
droGri2
TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTAAATATATATA---TA-T---A--TTT--TTTACAGTGGCTCGCGAGGATCACAGTCAAAATGATTGCTTTGTGCTTGTTCTCATGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 07:28 PM