dsi_554

CDS [3r_5586629_5586788_+]; exon [3r_5586629_5586788_+]; intron [3r_5584452_5586628_+]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TGAGTAAATATTGAAAACTGCATTACTTACAAGAGCAACTTAATGGGTGTTTATACTTTGGAGGCTTCTTTAAACACCAAAGTGCCATCTGCCAATTATGTGCCAACATGGCTCGTTAGTCAGTCAGGATAAATATATACAGTACAACATGTCCGCGGGTGGAGTGCACCTGGTTGATATCTCAATGCCTTTGTTTCCAGATCACCTGGGCAGCAAGCTGAGCGAGGCGTGGGAGAAGGAGGTCGAGAAG ************************************************.......((((((((.........(((....)))....(((......(((.((((...)))).)))....)))...(((((..................))))).((((((.....))))))(((((....)))))......))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	O001 Testis	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs
...........................................................................................................................................................................................................................GAGCGAGGCGTGGGAGAAG............	19	0	1	1.00	1	1	0	0	0
.................................................................................................................................................................................................................................GGCGTGGGAGAAGGAGGT.......	18	0	1	1.00	1	1	0	0	0
................................................................................................................................................................................................................GGCAGCAAGCTGAGCGAGGC......................	20	0	1	1.00	1	1	0	0	0
.........................................................................................................................................................................................................................CTGAGCGAGGCGTGGGAGAAGGAGGT.......	26	0	1	1.00	1	1	0	0	0
...............................................................................................................................................................................................................................GAGGCGTGGGAGAAGGAGGTCG.....	22	0	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................CACCTGGGCAGCAAGCTGAGCGAGGC......................	26	0	1	1.00	1	1	0	0	0
........................................................................................................................................................................................................................GCTGAACGAGGCGTGGGAGAAGGAGGT.......	27	1	1	1.00	1	1	0	0	0
..................................................................................................................................................................................................GATCAGATCACCTGGGCAGC....................................	20	3	4	0.25	1	1	0	0	0
.............................................................................................................................................................................TTACTAGCTCAATGCCTTTG.........................................................	20	3	11	0.18	2	0	0	0	2
.........................................................................................................................AGTGAGGATAAATAT..................................................................................................................	15	1	14	0.14	2	0	0	2	0
........................................................................................................................................................................CATGGTTGATAGCTCAGTG...............................................................	19	3	13	0.08	1	0	0	1	0

ACTCATTTATAACTTTTGACGTAATGAATGTTCTCGTTGAATTACCCACAAATATGAAACCTCCGAAGAAATTTGTGGTTTCACGGTAGACGGTTAATACACGGTTGTACCGAGCAATCAGTCAGTCCTATTTATATATGTCATGTTGTACAGGCGCCCACCTCACGTGGACCAACTATAGAGTTACGGAAACAAAGGTCTAGTGGACCCGTCGTTCGACTCGCTCCGCACCCTCTTCCTCCAGCTCTTC ************************************************.......((((((((.........(((....)))....(((......(((.((((...)))).)))....)))...(((((..................))))).((((((.....))))))(((((....)))))......))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	M023 head	M024 male body
.................................................AAGTCTGAAAGCTCCGAAGAAAT..................................................................................................................................................................................	23	3	2	0.50	1	1	0	0	0	0	0
................................................................................................................................TATTTTTATATGTCAGGTGGT.....................................................................................................	21	3	4	0.25	1	0	1	0	0	0	0
............................................................................................................................GTCCTATTTTGATATGTCAAG.........................................................................................................	21	3	5	0.20	1	0	1	0	0	0	0
.................................................................AAGGAATTTGTGGTGTGACG.....................................................................................................................................................................	20	3	7	0.14	1	0	0	1	0	0	0
...............................................................................................................GAGCAATGAGGCAGTCC..........................................................................................................................	17	2	8	0.13	1	0	0	0	1	0	0
....................................................................................................................................................................GCCTGGACCATCTATAGA....................................................................	18	3	20	0.05	1	0	0	0	0	0	1
.......................................................................................................................................ATATGTCATGTTTTA....................................................................................................	15	1	20	0.05	1	1	0	0	0	0	0
.........................................................................................................GGTACCAAGCCATCAGTC...............................................................................................................................	18	3	20	0.05	1	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	3r:5586429-5586678 +	dsi_554	TGA-GTAAA-------------TATTG--------------------------------------------------------------------AA---AACTGCATTACTTACAAGAGCAAC-------------------------------------------------------------------------------------------------------------------TTAA----TGGGTGTTTATACTTTGGAGGCTTCTTTAAACAC-------CAAAGTGCCATC-----TGCCAATTATGTGCCAA-CATGGCTCGTTAGTCAGTC---A-GGATAAATATATACAGTACAACATGTCCGCGG------------------------GTGGAGTGCACCTGGTTGATATCTCAATGCC------------TTTG-TTTCCAGATCACCTGGGCAGCAAGCTGAGCGAGGCGTGGGAGAAGGAGGTCGAGAAG
droSec2	scaffold_25:79523-79772 +		TGA-GTAAA-------------TATTG--------------------------------------------------------------------AA---AACTGCATTACTTACAAGAGCAAC-------------------------------------------------------------------------------------------------------------------TTAA----TGGGTGTTTATACTTTGGAGGCTTCTTTAAACAG-------CAAAGTGCCATC-----TGCCAATTATATGCCAA-CATGGCTCGTTAGTCAGTC---A-GGATAAATATATACAGTACAACAAGTCCGCGG------------------------GTGGAGTGCACCTTGTTGATATCTCAATGCC------------TTTG-TTTCCAGATCACCTGGGCAGCAAGCTGAGCGAGGCGTGGGAGAAGGAGGTCGAGAAG
dm3	chr3R:15697674-15697923 -		TGA-GTAAA-------------TATTG--------------------------------------------------------------------AA---AACTGCATTACTTACAAGAGCAAC-------------------------------------------------------------------------------------------------------------------TTAA----TGGGTGTTTATACTTTGAAGGCTTCTTTAAACAC-------CAAAGTACCATC-----TGCCAATTATATGCCAA-CATGCCTCGTTAGTCAGTC---A-GGAGAAATATATACAGTACAACATGTCCACGG------------------------GTGGAGTGCACCTGGTTGATATCTCAATGCC------------TTTG-TTTCCAGATCACCTGGGCAGCAAGCTGAGCGCGGCGTGGGAGAAGGAGGTCGAAAAG
droEre2	scaffold_4770:5965084-5965339 +		TGT-GTAAA-------------TATTA--------------------------------------------------------------------AG---AAAT-TATTACTTACATAAGCAAATAGCATC------------------------------------------------------------------------------------------------------GAGGACTCAATTCTGGCGCGTTTAC--TTTGGAGGCTTCTTTAAACAC-------CGAAGCACCATC-----TGCCAATTACATGCCAA-CATGCCTTGTTATGCAGTC---A-GGAGA-ATGTAC-------AGCATGTCCGCGG------------------------GTGGAGTGCACCTGGTTGATATCTCAATACC------------TTTG-TTTCCAGATCACCTGGGCAGCAAGCTGAGCGAGGCGTGGGAGAAGGAGGTCGAGAAG
droYak3	3R:4468549-4468806 -		TGGAGTTAG-------------TATTA--------------------------------------------------------------------AG---AACTGCCTTACGAACATAAGCAACTAGCGTC------------------------------------------------------------------------------------------------------AGTGACTCAATTCTTGCGGGTTTAA--TGCGGAGGCTTCTTTAAACAC-------CGAAGCACCATC-----TGCCAATTACATGTCAA-CATGCCTCGTTATTCAGTC---A-GGAGA-ATGCAT-------AACATGTCCACGG------------------------GTTGAGTGCACCTGGTTTATATCTTAATACA------------TTTG-TTTCCAGATCACCTGGGCAGCAAGTTGAGCGAGGCGTGGGAGAAGGAGGTCGAGAAG
droEug1	scf7180000409804:2004218-2004539 -		AAA-GCAAA------CTTTATT-------------TCTATATCTACTTAA---------------TCAATTTTTG---------------------------------------------------GTGTCGAGAACTATGAAACTATAGGACCTTACAAACTATTCAGCTTGT---TAAATTAATTTTTAG---------------------------------------AAAATAACTCAATTCTTGGGTGTTTAT--TTTGGTCGCATCGTTAAACAC-------CGCTGTATCATC-----TGCCAATTACATGCCAA-CATGCTCTGTTGTCCCGTC---ACGGCGGAATTTAT-------TATCTGCACATGGACA---------------------CCTGGCTGCACCTGGTTGATATCTTAATTTC------------TGTTTATTTCAGATCACCTGGGCAGCAAGCTGAGCGAGGCGTGGGAGAAGGAGGTTGAGAAG
droBia1	scf7180000302402:1472304-1472609 -		TTA-GTCAG-------------TTTTG------------------------------------------------------------------------------TTTTAGAAACAAAAGAAAC---------------------TTTTGA-----------------CCTTGTAGGTAGTATACTTTGTACTTATAAAAATAATATAGGTTGT--ATAAGGC--------AAAGGAACTCAATTCCCTGGGGTTTAT--TTTGGTAGCCTCTTAAAACAC-------TGCGCTATAATC-----TGCCAGTTACATGCCAA-CATGCCTTGCTGTTCCGTC---A-GGAAATATTTAT-------CATCGGGACATGG------------------------CCCGGGTGCACCTGTTTGATATCTCAATCTG------------TCTCTTCTCCAGATCACCTGGGCAGCAAGCTGAGCGCGGCGTGGGAGAAGGAGGTGGAGCAG
droTak1	scf7180000415710:115355-115663 +		TAA-AAAAG------ATTTCAATAC----GAA---ACTATTAATACTTAGAATACTTTC----------------------------------------------------------------------------ACTTAGAAGCTTTTGGTTATTACGAGCTAAAATACTTGTAGGTAGGATAATTTATAGCTAGTAAAAT-----------------------------------------------CATGTTTAT--TTTGGTAGCCTCTTTAAACAC-------TGCAGTATCATC-----TGCCAATTACATGCCAA-CATGCCTTGTTGTTCCGTC---G-GGGTGAATTTAT-------TATCTGGACATGG------------------------ACTGGGTGCACCTGGTTGATATCTCAATTGC------------TTTACTTTCCAGATCACCTGGGCAGCAAGCTGAGCGAGGCGTGGGAGAAGGAGGTGGAGAAG
droEle1	scf7180000491008:1209839-1210181 +		TGA-ATTCG------AT--------TGTCGCATATTCAA-----------AACACATTCTCTAAATCAACTTTAA---------------------------------------------------------------------------GTTTCTAC---------------------------GTTTTAC-----AAAAAAGGATAGTTTCTTAATAATGCAAAAACAGAAA------TAACGCTCAGGTGTTTAT--TTTTGTAGCATCTTTAAACAC-------TGCAGTATCATC-----TGCCTATTACATGCCAA-CCAGCCTGGTTGTTCCGTC---A-GCCGCAATTTAT-------TATCTACACACGGGCTGGAACTGGAACTGGTGTTGGGGATGGGTGCCCCTTGTTGATATCTCAATCCCAATCTGAATCCCTATACTCTCCAGATCACCTGGGCACCAAGCTGAGCGAGGCGTGGGAGAAGGAGGTCGAGAAG
droRho1	scf7180000780274:133531-133835 +		TAG-CTACATATATGTA--------TGTGACCTATTTAT-----------ATC----TATCTATATCTATTTTATTTTAGTTTAAAACTAAACTTCC---AGCTGTTGTGGGAACA---------------------------------------------------------------------------G---------------------------------------AAAATAACTTAAGTCATGGATGTTTAT--TTCTATAGCATCTTTAAACAC-------TGCGGTATGAAC-----GGTCAATTACATGCCAT-CGTGCCTTGTTGTTCCGTC---A-GGCGTAATTTAT-------TATCTGCACATGG------------------------GCTGGGTGCACCTTGTTGATATCTCAATCTC------------TATACTTTCCAGATCACCTGGGCAGCAAGCTGAGCGAGGCGTGGGAGAAGGAGGTCGAGAAG
droFic1	scf7180000454126:721167-721396 -		GGA-ACAAG------AGGTTAATGT-A--------------------------------------------------------------------CG---ATAT-TTTCGCTAACATAAA-----------------------------------------------------------------------------------------------------------------------------CACGGGTGTTTAT--TTTGTTAGCATCTTTAAACAC-------CGCAGTATCGTC-----TGCCAATTGCATGCCAA-CGTGCCTTGTTGTTCTGTC---A-GGAGGAATTTAT-------T-----------G------------------------CTTGGCTGCACCTGGATGATATCTCAATCTC------------TGCACTTTCCAGATCACCTGGGCAGCCAGTTGAGCGAGGCGTGGGAGAAGGAGGTGGAGAAG
droKik1	scf7180000297926:119473-119741 +		TAC-ATTAA-------------AATTA---------------------------------------------------------------AACG-AAAATTAACGAATTTCTTT--AGAGCGTT------------------------------------------------------TGCAC------------------------------------------------------AATTTATTCATGGTTGTTTGT--TTTGGAACCATCTTCAAACGCATTGAATCTCGGCATCGCCAACTCGGGCAATCT-----CAACCAGACCATATTTTCCCGTCTTCA-GAAATAATTTAT-------TGCCTTCACTGGG------------------------GCTGGGTGCACTTTGTTGATATCTCAATCTC------------CACGCTTTCCAGATCACCTGGGCAGCAAGCTGAGCGCGGCGTGGGAGAAGGAGGTGGAGAAG
droAna3	scaffold_13340:2279541-2279638 -		----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCGCAGTTTGTTGATATCTCAATCTGGA---CGATCTGTGTA-CTTTCAGATACCCTCGGCGCCCAGCTCAGCGAAGCCTGGGACAAGGAGGTGGAGAAA
droBip1	scf7180000396712:2063037-2063150 +		TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGCACATGA------------------------AATGGGTGCAGTTTGTTGATATCTCAATCTGGA---CGATCTGTGTA-CTTTCAGATACCCTCGGCGCCCAGCTCAGTGCTGCGTGGGACAAGGAGGTGGAGAAG
dp5	2:26316638-26316730 +		TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTCTTTTTTTCTGATATCTTAATCTT-----------GTATGCCCCACAGACACATTGGGCGCCCAGTTGAGCGAAGCCTGGGAGCGGGAGGTGGAGAAG
droPer2	scaffold_6:1646476-1646568 +		TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTCTATTTTTCTGATATCTTAATCTT-----------GTATGCCCCACAGACACATTGGGCGCCCAGTTGAGCGAAGCCTGGGAGCGGGAGGTGGAGAAG
droWil2	scf2_1100000004921:4118594-4118649 -		T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGACTATCTTGGCGCTAAGCTGAGTGCCGCCTGGGAGAAGGAGGTTGAGAAA
droVir3	scaffold_12855:7398659-7398714 -		T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAGATAAACTTGGCAAGAAGCTCAGCGATGCCTGGGAGAAGGAGGTGGAGGAG
droMoj3	scaffold_6500:9013007-9013080 -		A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTTATTTTT------------GTTG-TTGTCAGAAACCCTTGGCAATGAGTTGTGTGATGCCTGGGAGCGGGAGCTGCAGAAG
droGri2	scaffold_15074:5461673-5461761 +		TTA-ACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTAATGAAATGATGCTGTT-----------GTCTT-CTTGCAGATAAACTTGGCAAGAAGCTGAGCGATGCCTGGGAAAAGGAGGTAGAGGAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TGA-GTAAA-------------TATTG--------------------------------------------------------------------AA---AACTGCATTACTTACAAGAGCAAC-------------------------------------------------------------------------------------------------------------------TTAA----TGGGTGTTTATACTTTGGAGGCTTCTTTAAACAC-------CAAAGTGCCATC-----TGCCAATTATGTGCCAA-CATGGCTCGTTAGTCAGTC---A-GGATAAATATATACAGTACAACATGTCCGCGG------------------------GTGGAGTGCACCTGGTTGATATCTCAATGCC------------TTTG-TTTCCAGATCACCTGGGCAGCAAGCTGAGCGAGGCGTGGGAGAAGGAGGTCGAGAAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGAGGCGTGGGAGAAG............	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTGGGAGAAGGAGGT.......	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCAAGCTGAGCGAGGC......................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCGAGGCGTGGGAGAAGGAGGT.......	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCGTGGGAGAAGGAGGTCG.....	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTGGGCAGCAAGCTGAGCGAGGC......................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TGA-GTAAA-------------TATTG--------------------------------------------------------------------AA---AACTGCATTACTTACAAGAGCAAC-------------------------------------------------------------------------------------------------------------------TTAA----TGGGTGTTTATACTTTGGAGGCTTCTTTAAACAG-------CAAAGTGCCATC-----TGCCAATTATATGCCAA-CATGGCTCGTTAGTCAGTC---A-GGATAAATATATACAGTACAACAAGTCCGCGG------------------------GTGGAGTGCACCTTGTTGATATCTCAATGCC------------TTTG-TTTCCAGATCACCTGGGCAGCAAGCTGAGCGAGGCGTGGGAGAAGGAGGTCGAGAAG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCGAGGCGTGGGAGAAGGAGGT.......	26	1	2.00	2	0	1	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACCTGGGCAGCAAGCT...............................	19	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGCTGAGCGAGGCGTGGG.................	22	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTGGGAGAAGGAGGT.......	18	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTGGGAGAAGGAGGTCGAGAAG	25	1	1.00	1	0	0	1	0

dm3

TGA-GTAAA-------------TATTG--------------------------------------------------------------------AA---AACTGCATTACTTACAAGAGCAAC-------------------------------------------------------------------------------------------------------------------TTAA----TGGGTGTTTATACTTTGAAGGCTTCTTTAAACAC-------CAAAGTACCATC-----TGCCAATTATATGCCAA-CATGCCTCGTTAGTCAGTC---A-GGAGAAATATATACAGTACAACATGTCCACGG------------------------GTGGAGTGCACCTGGTTGATATCTCAATGCC------------TTTG-TTTCCAGATCACCTGGGCAGCAAGCTGAGCGCGGCGTGGGAGAAGGAGGTCGAAAAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTGGGCAGCAAGCTGAGCGC.........................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................TG--------------------------------------------------------------------AA---AACTGCATTACTTACA........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCGCGGCGTGGGAGAAGGAGGTC......	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTGGGAGAAGGAGGTC......	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TGCCTCGTTAGTCAGTC---A-GGAGAA...........................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACCTGGGCAGCAAGCTGA.............................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCTCAATGCC------------TTTG-.........................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................TACAAGAGCAAC-------------------------------------------------------------------------------------------------------------------TTAA----TGGG.................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................CTCGTTAGTCAGTC---A-GGAGAA...........................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGCGCGGCGTGGGAGAA.............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGCGCGGCGTGGGAGA..............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................GCCAATTATATGCCAA-CA.......................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGAGCGCGGCGTGGGA................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGAAGGAGGTCGAAAA.	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTGGGAGAAGGAGGT.......	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CACCTGGTTGATATCTCTT..............................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................A---AACTGCATTACTTACAAGAGCAAC-------------------------------------------------------------------------------------------------------------------TT...........................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCTGGGCAGCAAGCTGAGCGCGGC......................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

droEre2

TGT-GTAAA-------------TATTA--------------------------------------------------------------------AG---AAAT-TATTACTTACATAAGCAAATAGCATC------------------------------------------------------------------------------------------------------GAGGACTCAATTCTGGCGCGTTTAC--TTTGGAGGCTTCTTTAAACAC-------CGAAGCACCATC-----TGCCAATTACATGCCAA-CATGCCTTGTTATGCAGTC---A-GGAGA-ATGTAC-------AGCATGTCCGCGG------------------------GTGGAGTGCACCTGGTTGATATCTCAATACC------------TTTG-TTTCCAGATCACCTGGGCAGCAAGCTGAGCGAGGCGTGGGAGAAGGAGGTCGAGAAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGCGAGGCGTGGGAGAAGGA..........	24	1	2.00	2	0	0	0	0	1	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTGGGCAGCAAGCTGA.............................	19	1	2.00	2	0	0	0	1	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGGCGTGGGAGAAGGA..........	19	1	2.00	2	0	0	0	0	2	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGGCGTGGGAGAAGGAGGT.......	22	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACCTGGGCAGCAAG.................................	18	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGCTGAGCGAGGCGTGGGA................	23	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGAGCGAGGCGTGGGAGAAGGA..........	26	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCGAGGCGTGGGAGAAGG...........	22	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTCAATACC------------TTTG-TTTCCAG..................................................	24	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTGGGCAGCAAGCTG..............................	18	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCAGCAAGCTGAGCGAGGCGTGGGA................	27	1	1.00	1	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAAGCTGAGCGAGGCGTG...................	22	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGCGAGGCGTGGGAGAAGGAGGT.......	27	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCGAGGCGTGGGAGAAGGA..........	22	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGCAGCAAGCTGAGCGAGGC......................	23	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................C-------CGAAGCACCATC-----TGCCAATTACAT...............................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACCTGGGCAGCAAGCT...............................	20	1	1.00	1	0	0	0	1	0	0	0

droYak3

TGGAGTTAG-------------TATTA--------------------------------------------------------------------AG---AACTGCCTTACGAACATAAGCAACTAGCGTC------------------------------------------------------------------------------------------------------AGTGACTCAATTCTTGCGGGTTTAA--TGCGGAGGCTTCTTTAAACAC-------CGAAGCACCATC-----TGCCAATTACATGTCAA-CATGCCTCGTTATTCAGTC---A-GGAGA-ATGCAT-------AACATGTCCACGG------------------------GTTGAGTGCACCTGGTTTATATCTTAATACA------------TTTG-TTTCCAGATCACCTGGGCAGCAAGTTGAGCGAGGCGTGGGAGAAGGAGGTCGAGAAG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTGGGCAGCAAGTTGA.............................	19	1	6.00	6	0	2	0	0	0	1	3	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCGAGGCGTGGGAGAAGGAGGT.......	26	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACCTGGGCAGCAAGTTGAGC...........................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCGAGGCGTGGGAGAAGGAG.........	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGAAGGAGGTCGAGAA.	21	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCGAGGCGTGGGAGAAGGA..........	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTGGGAGAAGGAGGTC......	19	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGAGCGAGGCGTGGGA................	19	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTGAGCGAGGCGTGGGA................	20	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCGTGGGAGAAGGAGGT.......	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGGAGAAGGAGGTCGAG...	20	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCGAGGCGTGGGAGAAGGAGGT.......	27	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCGAGGCGTGGGA................	18	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCTGGGCAGCAAGTTGAGCG..........................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACCTGGGCAGCAAGTTG..............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCTGGGCAGCAAGTTGAG............................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGGCGTGGGAGAAGGAGGTCG.....	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CGTTATTCAGTC---A-GGAGA-ATGC.......................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGGCGTGGGAGAAGGAGGTCGAGA..	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGGCGTGGGAGAAGGA..........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTTGAGCGAGGCGTGGGA................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCAAGTTGAGCGAGGCGTG...................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGTTGAGCGAGGCGTG...................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTGGGCAGCAAGTTGAGCGAGGC......................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................ACTAGCGTC------------------------------------------------------------------------------------------------------AGTGACTCAATTCT.....................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................CCACGG------------------------GTTGAGTGCACCTGGTTT.......................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCGTGGGAGAAGGAGGTCGAGAA.	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTGGGCAGCAAGTTGAGCGAGG.......................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAAGTTGAGCGAGGCGTGG..................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTTGAGCGAGGCGTGGG.................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGGGCAGCAAGTTGAGCG..........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTTGAGCGAGGCGTGG..................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGGCGTGGGAGAAGGAG.........	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAGTTGAGCGAGGCGTGGGA................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACCTGGGCAGCAAGTT...............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCGAGGCGTGGGAGAAGGAG.........	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGCAGCAAGTTGAGCG..........................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTGGGCAGCAAGTTGAG............................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTTGAGCGAGGCGTGGGAGAAGGA..........	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCACCTGGGCAGCAAG.................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGGCGTGGGAGAAGGAGGTCGAG...	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGAGGCGTGGGAGAAGG...........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGCGTGGGAGAAGGA..........	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGAGGCGTGGGAGAAG............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGTTGAGCGAGGCGTGG..................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCGAGGCGTGGGAGAAGGA..........	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGAAGGAGGTCGA....	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTGGGAGAAGGAGGT.......	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGAAGGAGGTCGAGA..	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTGGGCAGCAAGTTGAGCGA.........................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGAGGCGTGGGAGAAGGA..........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCGAGGCGTGGGAGAAGGA..........	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTTGAGCGAGGCGTGGGA................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACCTGGGCAGCAAGTTGA.............................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGGCGTGGGAGAAGGAGGT.......	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGCGTGGGAGAAGGAGGTCGAGA..	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGTTGAGCGAGGCGTGGGAGA..............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCAGCAAGTTGAGCGAGGC......................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTTGAGCGAGGCGTGG..................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAAGTTGAGCGAGGCGTGGG.................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGGGCAGCAAGTTGAGCGAGGCGTG...................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGGCGTGGGAGAAGGA..........	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

AAA-GCAAA------CTTTATT-------------TCTATATCTACTTAA---------------TCAATTTTTG---------------------------------------------------GTGTCGAGAACTATGAAACTATAGGACCTTACAAACTATTCAGCTTGT---TAAATTAATTTTTAG---------------------------------------AAAATAACTCAATTCTTGGGTGTTTAT--TTTGGTCGCATCGTTAAACAC-------CGCTGTATCATC-----TGCCAATTACATGCCAA-CATGCTCTGTTGTCCCGTC---ACGGCGGAATTTAT-------TATCTGCACATGGACA---------------------CCTGGCTGCACCTGGTTGATATCTTAATTTC------------TGTTTATTTCAGATCACCTGGGCAGCAAGCTGAGCGAGGCGTGGGAGAAGGAGGTTGAGAAG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTA-GTCAG-------------TTTTG------------------------------------------------------------------------------TTTTAGAAACAAAAGAAAC---------------------TTTTGA-----------------CCTTGTAGGTAGTATACTTTGTACTTATAAAAATAATATAGGTTGT--ATAAGGC--------AAAGGAACTCAATTCCCTGGGGTTTAT--TTTGGTAGCCTCTTAAAACAC-------TGCGCTATAATC-----TGCCAGTTACATGCCAA-CATGCCTTGCTGTTCCGTC---A-GGAAATATTTAT-------CATCGGGACATGG------------------------CCCGGGTGCACCTGTTTGATATCTCAATCTG------------TCTCTTCTCCAGATCACCTGGGCAGCAAGCTGAGCGCGGCGTGGGAGAAGGAGGTGGAGCAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TAA-AAAAG------ATTTCAATAC----GAA---ACTATTAATACTTAGAATACTTTC----------------------------------------------------------------------------ACTTAGAAGCTTTTGGTTATTACGAGCTAAAATACTTGTAGGTAGGATAATTTATAGCTAGTAAAAT-----------------------------------------------CATGTTTAT--TTTGGTAGCCTCTTTAAACAC-------TGCAGTATCATC-----TGCCAATTACATGCCAA-CATGCCTTGTTGTTCCGTC---G-GGGTGAATTTAT-------TATCTGGACATGG------------------------ACTGGGTGCACCTGGTTGATATCTCAATTGC------------TTTACTTTCCAGATCACCTGGGCAGCAAGCTGAGCGAGGCGTGGGAGAAGGAGGTGGAGAAG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGA-ATTCG------AT--------TGTCGCATATTCAA-----------AACACATTCTCTAAATCAACTTTAA---------------------------------------------------------------------------GTTTCTAC---------------------------GTTTTAC-----AAAAAAGGATAGTTTCTTAATAATGCAAAAACAGAAA------TAACGCTCAGGTGTTTAT--TTTTGTAGCATCTTTAAACAC-------TGCAGTATCATC-----TGCCTATTACATGCCAA-CCAGCCTGGTTGTTCCGTC---A-GCCGCAATTTAT-------TATCTACACACGGGCTGGAACTGGAACTGGTGTTGGGGATGGGTGCCCCTTGTTGATATCTCAATCCCAATCTGAATCCCTATACTCTCCAGATCACCTGGGCACCAAGCTGAGCGAGGCGTGGGAGAAGGAGGTCGAGAAG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TAG-CTACATATATGTA--------TGTGACCTATTTAT-----------ATC----TATCTATATCTATTTTATTTTAGTTTAAAACTAAACTTCC---AGCTGTTGTGGGAACA---------------------------------------------------------------------------G---------------------------------------AAAATAACTTAAGTCATGGATGTTTAT--TTCTATAGCATCTTTAAACAC-------TGCGGTATGAAC-----GGTCAATTACATGCCAT-CGTGCCTTGTTGTTCCGTC---A-GGCGTAATTTAT-------TATCTGCACATGG------------------------GCTGGGTGCACCTTGTTGATATCTCAATCTC------------TATACTTTCCAGATCACCTGGGCAGCAAGCTGAGCGAGGCGTGGGAGAAGGAGGTCGAGAAG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGA-ACAAG------AGGTTAATGT-A--------------------------------------------------------------------CG---ATAT-TTTCGCTAACATAAA-----------------------------------------------------------------------------------------------------------------------------CACGGGTGTTTAT--TTTGTTAGCATCTTTAAACAC-------CGCAGTATCGTC-----TGCCAATTGCATGCCAA-CGTGCCTTGTTGTTCTGTC---A-GGAGGAATTTAT-------T-----------G------------------------CTTGGCTGCACCTGGATGATATCTCAATCTC------------TGCACTTTCCAGATCACCTGGGCAGCCAGTTGAGCGAGGCGTGGGAGAAGGAGGTGGAGAAG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TAC-ATTAA-------------AATTA---------------------------------------------------------------AACG-AAAATTAACGAATTTCTTT--AGAGCGTT------------------------------------------------------TGCAC------------------------------------------------------AATTTATTCATGGTTGTTTGT--TTTGGAACCATCTTCAAACGCATTGAATCTCGGCATCGCCAACTCGGGCAATCT-----CAACCAGACCATATTTTCCCGTCTTCA-GAAATAATTTAT-------TGCCTTCACTGGG------------------------GCTGGGTGCACTTTGTTGATATCTCAATCTC------------CACGCTTTCCAGATCACCTGGGCAGCAAGCTGAGCGCGGCGTGGGAGAAGGAGGTGGAGAAG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCGCAGTTTGTTGATATCTCAATCTGGA---CGATCTGTGTA-CTTTCAGATACCCTCGGCGCCCAGCTCAGCGAAGCCTGGGACAAGGAGGTGGAGAAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTGGGACAAGGAGGT.......	18	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCCTGGGACAAGGAGGTG......	21	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTGGGACAAGGAGGTGGAGA..	23	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCCTGGGACAAGGAGGTGGAG...	24	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATACCCTCGGCGCCC...................................	18	1	1.00	1	1	0	0	0	0	0

droBip1

TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGCACATGA------------------------AATGGGTGCAGTTTGTTGATATCTCAATCTGGA---CGATCTGTGTA-CTTTCAGATACCCTCGGCGCCCAGCTCAGTGCTGCGTGGGACAAGGAGGTGGAGAAG	Size	Hit Count	Total Norm	Total
No Reads

dp5

TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTCTTTTTTTCTGATATCTTAATCTT-----------GTATGCCCCACAGACACATTGGGCGCCCAGTTGAGCGAAGCCTGGGAGCGGGAGGTGGAGAAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCGAAGCCTGGGAGCGGGAGGT.......	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGCGCCCAGTTGAGCGAAGCCTGG..................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGAAGCCTGGGAGCGGGAG.........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGAAGCCTGGGAGCGGGAGGT.......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGCGCCCAGTTGAGCGAAGCCT....................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGGGAGCGGGAGGTGGA....	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTCTATTTTTCTGATATCTTAATCTT-----------GTATGCCCCACAGACACATTGGGCGCCCAGTTGAGCGAAGCCTGGGAGCGGGAGGTGGAGAAG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCGAAGCCTGGGAGCGGGA..........	22	1	3.00	3	3	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACATTGGGCGCCCAGTTGAGC...........................	24	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTGAGCGAAGCCTGGGA................	20	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCCCAGTTGAGCGAAGCCTGG..................	23	1	1.00	1	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCGAAGCCTGGGAGCGGGAGGT.......	25	1	1.00	1	0	0	1	0	0	0

droWil2

T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGACTATCTTGGCGCTAAGCTGAGTGCCGCCTGGGAGAAGGAGGTTGAGAAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCCGCCTGGGAGAAGGA..........	20	1	4.00	4	0	1	1	2	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGAGTGCCGCCTGGGAGAAGGA..........	26	1	2.00	2	0	0	1	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCGCCTGGGAGAAGGA..........	19	1	2.00	2	0	0	2	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCGCCTGGGAGAAGGAG.........	20	1	2.00	2	0	0	2	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCCGCCTGGGAGAAGGA..........	21	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGCCTGGGAGAAGGAGGT.......	21	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCCGCCTGGGAGAAGGAGG........	22	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTGCCGCCTGGGAGAAGGAGGT.......	25	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGCTGAGTGCCGCCTGG..................	20	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCCGCCTGGGAGAAGGAGGT.......	24	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCCGCCTGGGAGAAGGAG.........	22	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCCGCCTGGGAGAAGGAGGTT......	25	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTGCCGCCTGGGAGAAGGAGGT.......	27	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTGCCGCCTGGGAGAAGGA..........	24	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGAGTGCCGCCTGGGAGAAGGAGG........	28	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATCTTGGCGCTAAGCTGA.............................	22	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGAGTGCCGCCTGGGAGAAGG...........	25	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGAGTGCCGCCTGGGAGAA.............	23	1	1.00	1	0	0	0	1	0

droVir3

T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAGATAAACTTGGCAAGAAGCTCAGCGATGCCTGGGAGAAGGAGGTGGAGGAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCTCAGCGATGCCTGGGA................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATGCCTGGGAGAAGGA..........	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCAGCGATGCCTGGGA................	19	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAACTTGGCAAGAAGCTC..............................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAAGAAGCTCAGCGATGCCTGGGA................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAAGCTCAGCGATGCC.....................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGAAGCTCAGCGATGCCTGGGA................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGGAGAAGGAGGTGGAGGA.	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGAGAAGGAGGTGGA....	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAAGCTCAGCGATGCCTG...................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGGGAGAAGGAGGTGGA....	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCAGCGATGCCTGGGAGAAGGAG.........	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGCTCAGCGATGCCTGGGAGAA.............	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGATGCCTGGGAGAAGGAGGT.......	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTCAGCGATGCCTGG..................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCTGGGAGAAGGAGGTGGAGG..	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGCGATGCCTGGGAGAAGGAGGT.......	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATGCCTGGGAGAAGGAGGC.......	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATGCCTGGGAGAAGGAGGT.......	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCTGGGAGAAGGAGGTGGAGG..	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droMoj3

A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTTATTTTT------------GTTG-TTGTCAGAAACCCTTGGCAATGAGTTGTGTGATGCCTGGGAGCGGGAGCTGCAGAAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGTTGTGTGATGCCTGGGAGCGG............	26	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTTGTGTGATGCCTGGGAGCGGGA..........	27	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCCTGGGAGCGGGAGCT.......	22	1	1.00	1	1	0	0	0	0	0

droGri2

TTA-ACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTAATGAAATGATGCTGTT-----------GTCTT-CTTGCAGATAAACTTGGCAAGAAGCTGAGCGATGCCTGGGAAAAGGAGGTAGAGGAG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGCTGTT-----------GTCTT-CTTGCAG..................................................	25	1	1.00	1	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGAAGCTGAGCGATGCCTGGGA................	26	1	1.00	1	1	0

dsi_554

3r:5586479-5586628 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads