ID:

dsi_5536

 Coordinate:

3l:11747924-11748181 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-6.8 -6.8 -6.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTCCTGGATACGGTTTCAAATCGCAAAACGTGCCAAGTTCCTTGAAAAGTGTGCGAAAATTGCAAATATTTTGAGTTTCCATGTGACGTATGCGTAATGTGACCACAGTGCGGATTACAGTAATATATTTACCTTTATATAAATACGACTATATAAATGTGTGTGTGTGTGTGTCATTGTCTAGGAATTTTGTTTCGTCTGCAAAATGTGCAAAGTTTTTTAATGTTTACATGCCGAAATTCCAAGAGTCCCAGTTGACTCACGACTAAGACAAAAAGAGATTAGATAAAGAATGACCAACTATCTATACATTGGTGTTTACTTTAGTTTCGCAAATTTATGAAAACGTTTTGCTTTG
**********************************************************************..........((((.((((((.((((.(((....))).)))).)).)).)).))))**************************************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR618934
dsim w501 ovaries
 M024
male body		 M025
embryo
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
........................................................................................................ACAGTGCGGATTACAGTAATAT........................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0
......................................................................TTGAGTTTCCATGTGACGTATGCGTAA..................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................GATTAGATAAAGAATGAC............................................................. 18 0 1 1.00 1 0 0 0 0 1 0
..................................AAGTTCCTTGAAAAGTGTGC................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0
CTCCCGGATACGGTTTCAAATCGCAAAA.......................................................................................................................................................................................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0
............................................................................TTCCATGTGACGTATGCGTAATGTGAC............................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................................................................................TGTGTTTGTGTGAGTCATTGT.................................................................................................................................................................................. 21 2 5 0.20 1 0 1 0 0 0 0
........................................................................................................................................................................................................................TTTTTGATGGTTACATGCGGA......................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 1
.....................................................................................................................................................................................................................................................................................GATATTAGATAAAGAA................................................................. 16 1 11 0.09 1 0 1 0 0 0 0
...............................................................................................................................................................TGTGTTTGTGTGAGTCATTG................................................................................................................................................................................... 20 2 12 0.08 1 0 1 0 0 0 0

Anti-sense strand reads

GAGGACCTATGCCAAAGTTTAGCGTTTTGCACGGTTCAAGGAACTTTTCACACGCTTTTAACGTTTATAAAACTCAAAGGTACACTGCATACGCATTACACTGGTGTCACGCCTAATGTCATTATATAAATGGAAATATATTTATGCTGATATATTTACACACACACACACACAGTAACAGATCCTTAAAACAAAGCAGACGTTTTACACGTTTCAAAAAATTACAAATGTACGGCTTTAAGGTTCTCAGGGTCAACTGAGTGCTGATTCTGTTTTTCTCTAATCTATTTCTTACTGGTTGATAGATATGTAACCACAAATGAAATCAAAGCGTTTAAATACTTTTGCAAAACGAAAC
****************************************************************************************************************************************************************************************************************************************..........((((.((((((.((((.(((....))).)))).)).)).)).))))********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 O002
Head
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR618934
dsim w501 ovaries
...........................................................................................................................................................................................................................................CTTTAAGGTGCTCAGGG.......................................................................................................... 17 1 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................ACACACACACACAGTAAC................................................................................................................................................................................... 18 0 2 1.00 2 0 0 0 2 0 0 0 0
...........................................................................................................................................................................................................................................CTTTAAGGTGCTCAGGGT......................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................GCTTTAAGGTGCTCAGGGT......................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................AACTGAGTGCTGATTGT....................................................................................... 17 1 1 1.00 1 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................GCGCTTTAAGGTGCTCAGGGT......................................................................................................... 21 3 3 0.67 2 1 1 0 0 0 0 0 0
..............................................................................................ATTACACGGGTGTTACGCCT.................................................................................................................................................................................................................................................... 20 2 3 0.33 1 0 0 0 0 1 0 0 0
...............................................................................................................................................................ACACAAACACACTCAGTAAC................................................................................................................................................................................... 20 2 12 0.25 3 0 0 0 0 0 3 0 0
..............................ACGGTTCAAGGAAGTT........................................................................................................................................................................................................................................................................................................................ 16 1 7 0.14 1 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................................TAGGCTACTTCTTACTGGTT.......................................................... 20 3 9 0.11 1 0 0 0 0 0 0 1 0
..............................ACGGTTCAAGGAAGT......................................................................................................................................................................................................................................................................................................................... 15 1 14 0.07 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................TTCTGTCTTGCTCTAAT.......................................................................... 17 2 15 0.07 1 0 0 0 0 0 0 0 1
..............................ACGGTTGTAGGAACTTTTAA.................................................................................................................................................................................................................................................................................................................... 20 3 18 0.06 1 0 0 0 0 1 0 0 0

Generated: 04/24/2015 at 10:36 AM