ID:

dsi_5533

 Coordinate:

3l:8270281-8270430 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACGTCAGCGTATATGGCTCAAGAATCCAGAAACCAGAAAACCAAGCGACTCAAAGTTGCGCAACGCCTTGTCACGTTTTTATGTAAAAAGTTAGTAAGCCTTTTTTGATTTAACTCATCCGTAGGCCTGATATCATCTTGTTTAACATTTAATCTCAAAATTGTATCGTACTTAATCTAATATTGTATTTTGGTAAACAGGAATCAGCTGCGTTAATCGGGAGTGGTTCGTCGATTGTTCCGGCTGCACA
**************************************************((((((.(((...)))(((...((((....))))...))).......((((....(((......))).....)))).((((((.((.(((...............))).)).))))))..................))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M025
embryo
 O002
Head
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
..................................................................................................................................................................................................TAAAAAGAATCAGCTGCGTTAATCGGG............................. 27 3 1 2.00 2 2 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGGGAGTGGTTCGTCGATTGTTCC......... 24 0 1 2.00 2 0 0 2 0 0 0 0 0
.......................................................................................................................................................................................................GGAATCAGCTGCGTTAAT................................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0
................................................................................................................................................................TTGTGTCGTACTCGATCTAATATTGT................................................................ 26 3 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................GGGAGTGGTTCGTCGATTGTTCC......... 23 0 1 1.00 1 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................GAATCAGCTGCGTTAATCGGGA............................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................AAAGAATCAGCTGCGTTAATCGGGAG........................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AGTGGTTCATCGATTGTTCCG........ 21 1 1 1.00 1 0 0 0 0 0 0 1 0
.....AGCGTATATGGCTCAAGAATCCAGA............................................................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................AGTGGTTCGTCGATTGTTCCGGCTG.... 25 0 1 1.00 1 0 0 0 0 0 1 0 0
................................................................................................................................................................................CTGATATTGAATTTTGGTA....................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................GTTTGGTAAACAGGAA............................................... 16 1 8 0.38 3 3 0 0 0 0 0 0 0
...............................................................................................................................................................................TCTGATATTGAATTTTGGT........................................................ 19 2 4 0.25 1 1 0 0 0 0 0 0 0
...........................................................................TTTGTATGTAACTAGTTAGTA.......................................................................................................................................................... 21 3 12 0.08 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AATCGGAAGTGGTTC..................... 15 1 15 0.07 1 0 0 0 0 0 0 0 1
....................................AAAACCAAGCGACCCAAGAT.................................................................................................................................................................................................. 20 3 15 0.07 1 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................TTGGTAAACAGGAGT.............................................. 15 1 15 0.07 1 0 1 0 0 0 0 0 0
.................................................................................................................................ATACCGTCGTGTTTAACA....................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

TGCAGTCGCATATACCGAGTTCTTAGGTCTTTGGTCTTTTGGTTCGCTGAGTTTCAACGCGTTGCGGAACAGTGCAAAAATACATTTTTCAATCATTCGGAAAAAACTAAATTGAGTAGGCATCCGGACTATAGTAGAACAAATTGTAAATTAGAGTTTTAACATAGCATGAATTAGATTATAACATAAAACCATTTGTCCTTAGTCGACGCAATTAGCCCTCACCAAGCAGCTAACAAGGCCGACGTGT
**************************************************((((((.(((...)))(((...((((....))))...))).......((((....(((......))).....)))).((((((.((.(((...............))).)).))))))..................))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR618934
dsim w501 ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 M053
female body
............................................................................................................................................AACTTGTCAATGAGAGTTT........................................................................................... 19 3 20 0.40 8 4 0 3 0 1
..............................................CAGAGTTTCAACGCG............................................................................................................................................................................................. 15 1 10 0.10 1 0 0 0 1 0
.......................................TGGTTCGCGAAGTTTCAA................................................................................................................................................................................................. 18 2 10 0.10 1 0 1 0 0 0
.........................................................................................................................................................................................................TTAGTCGATGCAATTCG................................ 17 2 13 0.08 1 0 1 0 0 0
...........................................................................................................................................CAAAGTGGATATTAGAGTT............................................................................................ 19 3 20 0.05 1 1 0 0 0 0

Generated: 04/24/2015 at 10:48 AM