ID:

dsi_5521

 Coordinate:

3l:16198809-16198958 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-3.4 -2.9 -2.9

Flybase annnotation

CDS [3l_16198402_16198808_+]; CDS [3l_16198402_16198808_+]; exon [3l_16198402_16198808_+]; exon [3l_16198402_16198808_+]; intron [3l_16198809_16199342_+]; intron [3l_16198809_16199342_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTCTTCCCGTGCTGTTTGACTATCTAAGCCAGCTGGTAATGGAACTCAAGGTAGGTAATCATTGCGGACATCTTCGACCAACTTGGAATATGTGTATTTTACATTCTTGTTTATTTGTTTGTTTGTGCTGCTACTAAAGGCTGGCCATAACAGCAATGGGGCAAATCTCGATTCCGTTCCTGCCAAAGATTCCATAATGTACTTAGACATGATACAGATCAAACGAAGATCGGTCCTCGCCAAATATAGG
**************************************************.................((((.(((..........))).)))).......****************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR1275485
Male prepupae
..................................................................................TTGGAATATGTGTATTTT...................................................................................................................................................... 18 0 1 3.00 3 0 0 3 0 0 0 0 0 0
................TGACTATCTAAGCCAGCTGGTAATGGA............................................................................................................................................................................................................... 27 0 1 3.00 3 3 0 0 0 0 0 0 0 0
....TCCCGTGCTGTTTGACTATCTAAGCCAG.......................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................TGGTAATGGAACTCAAGATTGGTAC................................................................................................................................................................................................ 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0
......CCGTGCTGTTTGACT..................................................................................................................................................................................................................................... 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................GTAGGTAATCATTGCGGACATCTT................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..CTTCCCGTGCTGTTTGACTA.................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................TCTAAGCCAGCTGGTAATGGAACTCAAGA....................................................................................................................................................................................................... 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0
....................TATCTAAGCCAGCTGGTAATGGAACTC........................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...TTCCCGTGCTGTTTGACTATC.................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0
....TCCCGTGCTGTTTGACTATCTAAGC............................................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
TTCTTCCCGTGCTGTTTGACTATCTA................................................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............TTGACTATCTAAGCCAGCTGGTAATGGA............................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................TGGTAATGGAACTCAAG........................................................................................................................................................................................................ 17 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................TGGTAATGGAACTCAAGATTGGTA................................................................................................................................................................................................. 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................ATTGCGGACATCTTCG.............................................................................................................................................................................. 16 0 5 0.60 3 0 1 0 2 0 0 0 0 0
..................................................................................................................................................................AAATCTCGATTCCGTC........................................................................ 16 1 3 0.33 1 0 0 0 0 0 0 1 0 0
....................................................AGGTCATCATTTCGGACA.................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................AGTTCGGTCCTCGCCGA....... 17 2 6 0.17 1 0 0 0 0 0 0 0 1 0
...................................GTAATGGAAGTGAACGTAGG................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 0 1
....................................................................................................................................................................................................................................TTCGGTCCTCGCCAA....... 15 1 8 0.13 1 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................AACCTCGATTCCGTT........................................................................ 15 1 11 0.09 1 0 0 0 0 0 0 1 0 0
......................................................................................................................................TAAAGACTGGCCATA..................................................................................................... 15 1 12 0.08 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................AAATCGGTCGTCGCCAAAC..... 19 3 14 0.07 1 0 0 0 0 0 0 1 0 0
........................TAAGCGATCTGGTAATG................................................................................................................................................................................................................. 17 2 15 0.07 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................AAAGCGGTCCTCGCCAA....... 17 2 15 0.07 1 0 0 0 1 0 0 0 0 0
...........................................................CAAGGCGGACATCTTCGA............................................................................................................................................................................. 18 2 16 0.06 1 0 1 0 0 0 0 0 0 0
..........................................AACTCTAGGCAGATAATCAT............................................................................................................................................................................................ 20 3 19 0.05 1 0 0 0 0 1 0 0 0 0
......CCGTGCGGTTTGACCA.................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AAAGCGGTCCTCGCCA........ 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0
..CTTCCCGTGCTTTTT......................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

AAGAAGGGCACGACAAACTGATAGATTCGGTCGACCATTACCTTGAGTTCCATCCATTAGTAACGCCTGTAGAAGCTGGTTGAACCTTATACACATAAAATGTAAGAACAAATAAACAAACAAACACGACGATGATTTCCGACCGGTATTGTCGTTACCCCGTTTAGAGCTAAGGCAAGGACGGTTTCTAAGGTATTACATGAATCTGTACTATGTCTAGTTTGCTTCTAGCCAGGAGCGGTTTATATCC
******************************************************************************************************************************************************.................((((.(((..........))).)))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 M024
male body		 M053
female body
....AGTGCACGACAAACTGA..................................................................................................................................................................................................................................... 17 1 1 3.00 3 1 1 1 0 0 0 0 0 0
...AAGTGCACGACAAACTGA..................................................................................................................................................................................................................................... 18 1 1 2.00 2 2 0 0 0 0 0 0 0 0
....AGTGCACGACAAACTG...................................................................................................................................................................................................................................... 16 1 2 1.50 3 1 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................TATTACATGAATCTGTAC....................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...AAGTGCACGACAAACTG...................................................................................................................................................................................................................................... 17 1 2 1.00 2 1 1 0 0 0 0 0 0 0
.................................................................................................................AAAGAAACAAACACAAGGATGAT.................................................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0
....AGTGCACGACAAACTGAG.................................................................................................................................................................................................................................... 18 2 3 0.67 2 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GCTTCTGGCCAGGAG............ 15 1 2 0.50 1 0 1 0 0 0 0 0 0 0
...AAGTGCACGACAAACTGAGAGAA................................................................................................................................................................................................................................ 23 3 2 0.50 1 1 0 0 0 0 0 0 0 0
....AGTGCACGACAAACTGAGAGA................................................................................................................................................................................................................................. 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0
....AGTGCACGACAAACTGAGAGAA................................................................................................................................................................................................................................ 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0
...AAGTGCACGACAAACTGAGAGA................................................................................................................................................................................................................................. 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TCGCCAGGAGCGGCTTA..... 17 2 6 0.50 3 0 0 0 3 0 0 0 0 0
.........ACGACAAACTGAGAG.................................................................................................................................................................................................................................. 15 1 7 0.29 2 0 0 0 0 0 2 0 0 0
.....................................................................................................................................................................................................................................AGCCAGGAGCGGCTTTTA... 18 2 4 0.25 1 0 0 0 1 0 0 0 0 0
...AAGTGCACGACAAACT....................................................................................................................................................................................................................................... 16 1 4 0.25 1 0 1 0 0 0 0 0 0 0
....AGTGCACGACAAACT....................................................................................................................................................................................................................................... 15 1 12 0.17 2 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GAGTCTGTTCTATGTCTA............................... 18 2 7 0.14 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TCGCCAGGAGCGGCTTTTA... 19 3 20 0.10 2 0 0 0 2 0 0 0 0 0
................................................................GCCTGTAGGAGCTTGT.......................................................................................................................................................................... 16 2 20 0.10 2 0 0 0 2 0 0 0 0 0
...................................................................................................................................................................................................TCACATGAATCTGTA........................................ 15 1 12 0.08 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................CTGTACTATAACTAGTTAG.......................... 19 3 19 0.05 1 0 0 0 0 0 0 1 0 0
.........ACGACAAACTGAGAGAA................................................................................................................................................................................................................................ 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0
.......................................................................................................AAAAACAAATAAACAAACAA............................................................................................................................... 20 1 20 0.05 1 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................GTATTCCATGAAGATGTAC....................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0

Generated: 04/24/2015 at 02:51 AM