dsi_5510

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+
DNAREP1_DM	RC	Helitron	-

TTATTCCCCAATTTCTATCGATATGTCAGAAAAATGATGAAAATTCCTTTTCCCTTCCACTGGCTGAATAACGGGTATCTGATAGTCTGTCAACTCCACTATAGCATTCTCTCTTGTTATTACTCATATTTCTTTTTTAACTCTCTTATTTCCTTATAAATATATATATTTTTTTAAACACTAAAACTTTTCATTTCTAGGTTGACCCCGATTGCTCTTATTTGACATGCTGTGCAAAAGCTATGGCAAC ************************************************..........((((.((.((.(((....))).)).)).))))........((((((........))))))................................................................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR618934 dsim w501 ovaries	M053 female body	O001 Testis	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR902009 testis	SRR902008 ovaries
................................................................TGAATAACGGGTATCTGATAGTCTGT................................................................................................................................................................	26	0	1	2.00	2	2	0	0	0	0	0	0	0	0
.......................................................................CGGGTATCTGATGGTCTGTCA..............................................................................................................................................................	21	1	1	1.00	1	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCTGTGCAAAAGCTATGGC...	20	0	1	1.00	1	0	0	0	0	1	0	0	0	0
....TCCCCAATTTCTATCGATATGTCAGA............................................................................................................................................................................................................................	26	0	1	1.00	1	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................TTGACCCCGATTGCTCTTA..............................	19	0	1	1.00	1	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................GATTGCTCTTATTTGACATGCT...................	22	0	1	1.00	1	0	1	0	0	0	0	0	0	0
................................................................TGAATAACGGGTATCTGATAGTC...................................................................................................................................................................	23	0	8	0.50	4	0	0	2	0	0	0	1	1	0
....................................................................................................................TCATTACTCGGATTTCTTTTTT................................................................................................................	22	3	5	0.40	2	0	0	0	0	0	2	0	0	0
................................................................TGAGTAACGGGTATCTGATAGTCTGTCT..............................................................................................................................................................	28	2	3	0.33	1	0	0	0	0	0	0	1	0	0
...........................................................................................AACTCCACTATAGCATT..............................................................................................................................................	17	0	4	0.25	1	0	0	1	0	0	0	0	0	0
.............................................................................................................................ATATTTCTTTTGTAACT............................................................................................................	17	1	5	0.20	1	0	0	0	0	0	1	0	0	0
................................................................TGAATAACGGGTATCTGATA......................................................................................................................................................................	20	0	9	0.11	1	0	0	1	0	0	0	0	0	0
................................................................TGAATAACGGGTATCTGATAGT....................................................................................................................................................................	22	0	9	0.11	1	0	0	0	0	0	0	0	0	1
......................................................................ACGGGTATCTGATAGTCTG.................................................................................................................................................................	19	0	10	0.10	1	0	0	1	0	0	0	0	0	0
................................................................TGAATAACGGGTATCT..........................................................................................................................................................................	16	0	11	0.09	1	0	0	1	0	0	0	0	0	0
........................GTCAGAAAATTGATGA..................................................................................................................................................................................................................	16	1	12	0.08	1	1	0	0	0	0	0	0	0	0
................................................................................................................TTTGTTATTACTCATTTTTGTTTT..................................................................................................................	24	3	13	0.08	1	0	0	0	0	0	1	0	0	0

AATAAGGGGTTAAAGATAGCTATACAGTCTTTTTACTACTTTTAAGGAAAAGGGAAGGTGACCGACTTATTGCCCATAGACTATCAGACAGTTGAGGTGATATCGTAAGAGAGAACAATAATGAGTATAAAGAAAAAATTGAGAGAATAAAGGAATATTTATATATATAAAAAAATTTGTGATTTTGAAAAGTAAAGATCCAACTGGGGCTAACGAGAATAAACTGTACGACACGTTTTCGATACCGTTG ************************************************..........((((.((.((.(((....))).)).)).))))........((((((........))))))................................................................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR902008 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
..................................................................................ATCAGACAGTTGAGGTGATATCGT................................................................................................................................................	24	0	1	2.00	2	2	0	0	0	0	0
.................................................................................TATCAGACAGTTGAGGTGATATCGT................................................................................................................................................	25	0	1	2.00	2	2	0	0	0	0	0
..................................................AGGGAAGGTGATCAACTTATTGCC................................................................................................................................................................................	24	2	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................TGAGAGTATAAAGGAAT..............................................................................................	17	1	2	1.00	2	2	0	0	0	0	0
.................................................................................................................................................................................TGTGATTTTGAAAAGTAAAGA....................................................	21	0	1	1.00	1	1	0	0	0	0	0
....AGGGGTTAAAGATAGCTATACAGTCTT...........................................................................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................AGAGAATAAAGGAATC.............................................................................................	16	1	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................TAGAGAGAATAAAGGAAT..............................................................................................	18	1	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................AGAATATTCTGTACGACACGTTTTCGA........	27	2	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................ATTGAGGGAATAAAGGAATCT............................................................................................	21	2	1	1.00	1	1	0	0	0	0	0
.............................................GGAAAAGGGAAGGTGACCGACTTATTGC.................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0
.....................................ACTTTTAAGGAAAAGGGAAGGTGATC...........................................................................................................................................................................................	26	1	1	1.00	1	0	0	0	1	0	0
.............AGATAGCTATACAGTCTTTTTACTACTT.................................................................................................................................................................................................................	28	0	1	1.00	1	0	1	0	0	0	0
................................................................................CTATCAGACAGTTGAGGTGATATCGTA...............................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0
........................................................GATGACCGACTTAGTTCCCA..............................................................................................................................................................................	20	3	2	0.50	1	0	1	0	0	0	0
................................................................................................................................................................................................TAAGGATCCAACTCGGG.........................................	17	2	4	0.50	2	0	0	0	0	0	2
.............AAATAGCTATATAGTCTTTTTACTTCT..................................................................................................................................................................................................................	27	3	8	0.50	4	0	1	1	0	0	2
..............................................................................................................................................GAGAATAAAGGAATC.............................................................................................	15	1	6	0.33	2	2	0	0	0	0	0
........................................ATTAAGGAATAGGGCAGGTG..............................................................................................................................................................................................	20	3	3	0.33	1	0	0	0	1	0	0
...........................................................................................................................................TGAGAGTATAAAGGAATC.............................................................................................	18	2	3	0.33	1	1	0	0	0	0	0
.............AGATAGCTATATAGTCTTTTCACTACT..................................................................................................................................................................................................................	27	2	3	0.33	1	0	0	1	0	0	0
........................................................................................................................................AAATGAGATAATAAAGGAATC.............................................................................................	21	3	7	0.14	1	1	0	0	0	0	0
...................................CTAGTTTGAAGGGAAAGGGAA..................................................................................................................................................................................................	21	3	7	0.14	1	0	1	0	0	0	0
................................................................................................................................AAAAAAAAAATTGAGAGA........................................................................................................	18	1	10	0.10	1	1	0	0	0	0	0
.............................................................................................................................................AGATAATAAAGGAAT..............................................................................................	15	1	20	0.10	2	2	0	0	0	0	0
...........................................................................................................................................TGAGAATATAAAGGAAT..............................................................................................	17	2	20	0.10	2	2	0	0	0	0	0
.............AAATAGCTATATAGTCTTTTTACT.....................................................................................................................................................................................................................	24	2	13	0.08	1	0	0	0	0	0	1
.................................................................................................................................................................................................AAGGATCCAACTCGGG.........................................	16	2	13	0.08	1	0	0	0	0	0	1
........................................................................................................................................................................AAAAAAATTTGTCATGTTGAT.............................................................	21	3	14	0.07	1	0	0	0	1	0	0
....................................TACTTGTTAGGAAGAGGGA...................................................................................................................................................................................................	19	3	18	0.06	1	1	0	0	0	0	0
.............................................................................................................................................TGAGAATAAAGGAAT..............................................................................................	15	1	18	0.06	1	1	0	0	0	0	0
............................................................................................................................................GATAGAATAAAGGAATC.............................................................................................	17	2	20	0.05	1	1	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:2405362-2405611 -	dsi_5510	TTATTC-CC---CAATTTCTATCGATATGTCA--------GAAAAATGAT------GAAAAT-TCC----------------------------------TTTTCCCTTCCACTGGCTGAATAACGGGTATCTGATAGTCTGTCA----ACTCCACTATAGCATTCTCTCTTGTTATTACTCATA------TTTCTTT----------------------------------TTTA-ACT----------CTCTTATTTCC-TTATAA-----ATATATATATT-----TTTTTAAACACT-----AAAACTTTTCATTTC---TAGGTTGACCCCGATT-------------------------------GCT--CTTATTTGACATGCTGTGCAAAAGC-----TATGGCAAC
droSec2	scaffold_26:35389-35611 -		TTATTC-CC---CAATTTCTACCGATATGTCA--------GAAAAATGAT------GAACAT-TCC----------------------------------TTTTCCCTTCCACTAGTTGAATAACGGGTATCTGATAGTCTGTCA----ACTTCACTATAGCATTCTCTCTTGTTATTTCTCATA------TTTCTTT----------------------------------TTTA-ATC----------CTTCAATTTCC-TT------------------------------------------AAAACTTTTCATTTC---TAGGTTGACCCCGATT-------------------------------GCT--CTTATTTGACATGCTGTGCAAAAGC-----TATGGCAAC
dm3	chr2R:1391099-1391360 -		TTATTC-TCTATCTAATTCTATCGATATGCCA--------GAAAAATTAT------GAAAAT-TCC--------------------------------CATTTTCCCTTCCACTAGCTGAATAACGGGTATCTGATAGTCCGGTA----ACTCGACTATAGCATTCTCTCTTGTAATTTCAAATA------TTTCGTT----------------------------------CCTT-ATC----------CTTATATTTCGTTATATAA----ATATAAATATT-----TTTATAAACACT-----AAAACTTTTCTCTTC---CAGGTTGACCCACATT-------------------------------GCT--CTTTTTTGACATGCTGTGCAAAAGCTCAGATATGGCAGA
droEre2	scaffold_4929:23799885-23800124 -		TTGCATTCG---CGATTTCTACCAATATTCCA--------GAAA-ATTAT------GAAATT-TCT--------------------------------CTTTCGCAATTCCACTAGC----TAACGGGTATCTGATAGTCGGGGA----CCTCGCCTATAGCATTCTATCTTGTTCTGTAAT---------CA----TATTCA-TTCAATTTTATTTTCCATCTTTGTAATT--------TCATATTGGC-------------------------------------------------------------CTTTTAATAA---TAGGTTGTCAAATATCTCACTTTTTTT--------------------GCT--CTTTA-TTCAATGCTTTATAAAAAG-------TGTTACA
droYak3	v2_chr2L_random_001:149792-150013 -		TTGTACTGG---CAATTATAGTAGGTATGCCA--------AAAGAATTTT------TAAAATGTCT--------------------------------CCCTCGCACTCCCACTATCTGAGAAACGGGTATTTGATAGTCAAGGA----ACTCGAATATAGTGTTCTTTCTTGTTTTTAATATAT------AA-AATA----------------------------------ATCA-T----------------AATTTAT-GTATAA-----AGTTATATATT-----TGCTT-------AT---ATAAGCTTGCTTTTCTTTGAGTTT------AATT-------------------------------TTTATTTTATTTTGCATGCT------------------------
droEug1	scf7180000408984:635900-636072 +		-----------------------------------------------------------------------------------------------------------------------AGTAACGGGTATCGTATAGTCGCGGC----ACTGGACTATAGCGTTTCCTCTTGTTTTTATTTGTT------GATATTG----------------------------------TTTA-A----------------GATTTCT-TCATGA-----ATGAAAACATC-----TTTTCCC-----GC---AAAAGAAGGCATTTT---TTTGTTCACCCCAACA---------------------------------T--CCACTTTAACACATTATATCGAGGT-----TCTTTCTAT
droBia1	scf7180000301495:673937-674229 +		TGTCTC-AT---CGATACCTATCGAAACGAAT--------AAAA-A-GCT-----TAAAACTGTCTGCCGCCCATCTGCTGCTTATTTATCTCCATTTCTATTTTGCTCCCTTAAGCTGAGTAACGGGTACCCGATAGTCAAGGC----ACTCGACTATAGTCTCCTTCCTTGTTTTTAAATAAA------TG----TTTTAA-TAAAATATTTTTCTTTATCTTTAA---------------------------------------------GCCTCAATAATTCATTAGT----G-CGTATTGTTAAAT-CTGATTTTA---CTAATTACCCCCTAAT-----GTCTTTAATTTAATGGCTTTGTTATT------------------------GAATAT-----AACATCACC
droTak1	scf7180000414645:7865-8093 -		TCA-------------------------------------AAAAAATGCT------ATACAT------------------------------CTATCTCCCTCGCACTCCTTATAGCCGAGTGCCGGGTATTAGATGGTCGGGACACCAACCCGACTATAGCGTTCTCTCTTGTTTATTCTCATTAAAAAAAAACAGCTTTAAACTAAGCATATTTTCTTAAA-------TG--------TAGACTTGGT------------------------------------------------------------------TCTTT---GAAATTAAAAAAGATG--------------------GCTATGATTTTGCT--TTCATTT--CAAACAGCCCAAAAAC-----CATTGACAC
droEle1	scf7180000488256:601-793 -		TAT-GC-CT---TAACTACAATTGTTTTGTAG--------GGTAAATACTAAGGTTGAAGTT-------------------------------------------TGTTTTGTTGGGAGAGTAATGGGTATCTATTAGTCGGGAA----ACTCGACTATAGCGTTATTTCTTGTTCTAACTCAAA------TG-----------------------------------------------TAAACTTAATGT----CTTTG-TGAT-----AACTATTTAATTT-----TTTCAAAACGCC-----GTCAA------------------------------CACCTTTTTT--------------------G---------------------------------------TTTA
droRho1	scf7180000776300:461-699 +		ATTTGT------------------------TAAAAAGTTAT--GAGTGAT------CAAAGT-TTC---------------------TATCTCCATCTCCCTCGCACTCCCTTTACCTGAGTAACGGGTATCTGATAGTCGGGGC----ACCCGACTATAGCGTTCTCTCTTGTTTTTTATTATA------TTTGGCG----------------------------------TTTTGTAA----------ATACTTTTTCT-TTTTGAA----TGGTTAATATTTCTTTTTA----GAAAT-----ATTTATTATTTTTTG---TAGTTTTGCACTTTTT-------------------------------GCG--ATTGTTTATTTTCCTGTATAA------------------
droAna3	scaffold_13078:1916-2009 -		TTTCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------T---TTCTTGTTTTTTATA------TGCGTTT----------------------------------TTTA-TTT----------TTATTGTTTTC-TTTTAAAGGAATTGTATGAATT-----TTACAAATAACT-----TTTACTTGGCGTTT-----------------------------------------------------------------------------------------------
droWil2	scf2_1100000004950:25863-25947 -		TTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTTGTTGTTACTTATA------ATTGTTG----------------------------------TTT-----------AGATTT----TTTCG-CAAA-----AATTTCTTGTGTT-----TTTCTTGTTGCT-----TTTACTTTTTATT------------------------------------------------------------------------------------------------
droMoj3	scaffold_6236:1173-1268 -		TATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTTATT-------------------------------------------------------------------------------------------------ATATATATA-----TTTATGCTCACT-----AAGACCTCTTA-------TT----TGCTCCTCCC-------------------------------AAT--ATTTTTTTTCATTCAATATAACGGC-----TGTGGTTTC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TTATTC-CC---CAATTTCTATCGATATGTCA--------GAAAAATGAT------GAAAAT-TCC----------------------------------TTTTCCCTTCCACTGGCTGAATAACGGGTATCTGATAGTCTGTCA----ACTCCACTATAGCATTCTCTCTTGTTATTACTCATA------TTTCTTT----------------------------------TTTA-ACT----------CTCTTATTTCC-TTATAA-----ATATATATATT-----TTTTTAAACACT-----AAAACTTTTCATTTC---TAGGTTGACCCCGATT-------------------------------GCT--CTTATTTGACATGCTGTGCAAAAGC-----TATGGCAAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................................................TGAATAACGGGTATCTGATAGTCTGT................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................TGCTGTGCAAAAGC-----TATGGC...	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
....TC-CC---CAATTTCTATCGATATGTCA--------GA.....................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................TTGACCCCGATT-------------------------------GCT--CTTA...................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GATT-------------------------------GCT--CTTATTTGACATGCT........................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TGAATAACGGGTATCTGATAGTC...................................................................................................................................................................................................................................................................................	23	8	0.50	4	0	0	0	0	0	0	1	0	0	0	2	0	0	1	0	0	0
................................................................................................................................................A----ACTCCACTATAGCATT..........................................................................................................................................................................................................................................................	17	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................TGAATAACGGGTATCTGATA......................................................................................................................................................................................................................................................................................	20	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................TGAATAACGGGTATCTGATAGT....................................................................................................................................................................................................................................................................................	22	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................ACGGGTATCTGATAGTCTG.................................................................................................................................................................................................................................................................................	19	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................TGAATAACGGGTATCT..........................................................................................................................................................................................................................................................................................	16	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TTATTC-CC---CAATTTCTACCGATATGTCA--------GAAAAATGAT------GAACAT-TCC----------------------------------TTTTCCCTTCCACTAGTTGAATAACGGGTATCTGATAGTCTGTCA----ACTTCACTATAGCATTCTCTCTTGTTATTTCTCATA------TTTCTTT----------------------------------TTTA-ATC----------CTTCAATTTCC-TT------------------------------------------AAAACTTTTCATTTC---TAGGTTGACCCCGATT-------------------------------GCT--CTTATTTGACATGCTGTGCAAAAGC-----TATGGCAAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

TTATTC-TCTATCTAATTCTATCGATATGCCA--------GAAAAATTAT------GAAAAT-TCC--------------------------------CATTTTCCCTTCCACTAGCTGAATAACGGGTATCTGATAGTCCGGTA----ACTCGACTATAGCATTCTCTCTTGTAATTTCAAATA------TTTCGTT----------------------------------CCTT-ATC----------CTTATATTTCGTTATATAA----ATATAAATATT-----TTTATAAACACT-----AAAACTTTTCTCTTC---CAGGTTGACCCACATT-------------------------------GCT--CTTTTTTGACATGCTGTGCAAAAGCTCAGATATGGCAGA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................TGCTGTGCAAAAGCTCAGAT........	20	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................TGCTGTGCAAAAGCTCAGA.........	19	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................TTTTTGACATGCTGTGCAAAA................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGCAAAAGCTCAGA.........	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGTGCAAAAGCTCAGATA.......	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAAAGCTCAGATATGGCA..	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GTTGACCCACATT-------------------------------GCT--CT.....................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TGACATGCTGTGCAAAAGCTCAGAT........	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................................................................................................................................................CTCGACTATAGCATTCTCTCT....................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TCGACTATAGCATTCTCTC.....................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................ACTCGACTATAGCATTCTC.......................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................AACGGGTATCTGATAGTC...................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TTGCATTCG---CGATTTCTACCAATATTCCA--------GAAA-ATTAT------GAAATT-TCT--------------------------------CTTTCGCAATTCCACTAGC----TAACGGGTATCTGATAGTCGGGGA----CCTCGCCTATAGCATTCTATCTTGTTCTGTAAT---------CA----TATTCA-TTCAATTTTATTTTCCATCTTTGTAATT--------TCATATTGGC-------------------------------------------------------------CTTTTAATAA---TAGGTTGTCAAATATCTCACTTTTTTT--------------------GCT--CTTTA-TTCAATGCTTTATAAAAAG-------TGTTACA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................................................................TCTGATAGTCGGGGA----CCTCGCCTAT................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.TGCATTCG---CGATTTCTACCAATATTC.................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................TTCTATCTTGTTCTGTAAT---------CA----TATTCA-T..................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
......TCG---CGATTTCTACCAATATTCC................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................TAGC----TAACGGGTATCTGATAGTCGGGGA----C.........................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................T--------------------GCT--CTTTA-TTCAATGCTTTAT....................	22	20	0.05	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TTTTT--------------------GCT--CTTTA-TTCAATGCTT.......................	23	20	0.05	1	1	0	0	0	0	0	0

droYak3

TTGTACTGG---CAATTATAGTAGGTATGCCA--------AAAGAATTTT------TAAAATGTCT--------------------------------CCCTCGCACTCCCACTATCTGAGAAACGGGTATTTGATAGTCAAGGA----ACTCGAATATAGTGTTCTTTCTTGTTTTTAATATAT------AA-AATA----------------------------------ATCA-T----------------AATTTAT-GTATAA-----AGTTATATATT-----TGCTT-------AT---ATAAGCTTGCTTTTCTTTGAGTTT------AATT-------------------------------TTTATTTTATTTTGCATGCT------------------------

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEug1

-----------------------------------------------------------------------------------------------------------------------AGTAACGGGTATCGTATAGTCGCGGC----ACTGGACTATAGCGTTTCCTCTTGTTTTTATTTGTT------GATATTG----------------------------------TTTA-A----------------GATTTCT-TCATGA-----ATGAAAACATC-----TTTTCCC-----GC---AAAAGAAGGCATTTT---TTTGTTCACCCCAACA---------------------------------T--CCACTTTAACACATTATATCGAGGT-----TCTTTCTAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGTCTC-AT---CGATACCTATCGAAACGAAT--------AAAA-A-GCT-----TAAAACTGTCTGCCGCCCATCTGCTGCTTATTTATCTCCATTTCTATTTTGCTCCCTTAAGCTGAGTAACGGGTACCCGATAGTCAAGGC----ACTCGACTATAGTCTCCTTCCTTGTTTTTAAATAAA------TG----TTTTAA-TAAAATATTTTTCTTTATCTTTAA---------------------------------------------GCCTCAATAATTCATTAGT----G-CGTATTGTTAAAT-CTGATTTTA---CTAATTACCCCCTAAT-----GTCTTTAATTTAATGGCTTTGTTATT------------------------GAATAT-----AACATCACC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCA-------------------------------------AAAAAATGCT------ATACAT------------------------------CTATCTCCCTCGCACTCCTTATAGCCGAGTGCCGGGTATTAGATGGTCGGGACACCAACCCGACTATAGCGTTCTCTCTTGTTTATTCTCATTAAAAAAAAACAGCTTTAAACTAAGCATATTTTCTTAAA-------TG--------TAGACTTGGT------------------------------------------------------------------TCTTT---GAAATTAAAAAAGATG--------------------GCTATGATTTTGCT--TTCATTT--CAAACAGCCCAAAAAC-----CATTGACAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TAT-GC-CT---TAACTACAATTGTTTTGTAG--------GGTAAATACTAAGGTTGAAGTT-------------------------------------------TGTTTTGTTGGGAGAGTAATGGGTATCTATTAGTCGGGAA----ACTCGACTATAGCGTTATTTCTTGTTCTAACTCAAA------TG-----------------------------------------------TAAACTTAATGT----CTTTG-TGAT-----AACTATTTAATTT-----TTTCAAAACGCC-----GTCAA------------------------------CACCTTTTTT--------------------G---------------------------------------TTTA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATTTGT------------------------TAAAAAGTTAT--GAGTGAT------CAAAGT-TTC---------------------TATCTCCATCTCCCTCGCACTCCCTTTACCTGAGTAACGGGTATCTGATAGTCGGGGC----ACCCGACTATAGCGTTCTCTCTTGTTTTTTATTATA------TTTGGCG----------------------------------TTTTGTAA----------ATACTTTTTCT-TTTTGAA----TGGTTAATATTTCTTTTTA----GAAAT-----ATTTATTATTTTTTG---TAGTTTTGCACTTTTT-------------------------------GCG--ATTGTTTATTTTCCTGTATAA------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TTTCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------T---TTCTTGTTTTTTATA------TGCGTTT----------------------------------TTTA-TTT----------TTATTGTTTTC-TTTTAAAGGAATTGTATGAATT-----TTACAAATAACT-----TTTACTTGGCGTTT-----------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................................................................................................................................................................................................................................................................................TT-----TTACAAATAACT-----TTTACTTGGCGC.................................................................................................	26	20	0.05	1	0	1	0	0	0	0

droWil2

TTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTTGTTGTTACTTATA------ATTGTTG----------------------------------TTT-----------AGATTT----TTTCG-CAAA-----AATTTCTTGTGTT-----TTTCTTGTTGCT-----TTTACTTTTTATT------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droMoj3

TATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTTATT-------------------------------------------------------------------------------------------------ATATATATA-----TTTATGCTCACT-----AAGACCTCTTA-------TT----TGCTCCTCCC-------------------------------AAT--ATTTTTTTTCATTCAATATAACGGC-----TGTGGTTTC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................TTTCATTCAATATAACGGC-----TGTGG....	24	6	7.67	46	38	0	0	0	8	0
..............................................................................................................................................................................................................................................................................................................................................................................................TTTCATTCAATATAACGGC-----TGTGGT...	25	6	7.33	44	31	0	0	0	12	1
..............................................................................................................................................................................................................................................................................................................................................................................................TTTCATTCAATATAACGGC-----TGTGGTT..	26	6	6.00	36	18	0	0	0	18	0
............................................................................................................................................................................................................................................................................................................................................................................................TTTTTCATTCAATATAACGGC-----TGTGG....	26	6	4.33	26	22	0	0	0	4	0
.....................................................................................................................................................................................................................................................................................................TGCTCACT-----AAGACCTCTTA-------TT----TGCTCC...............................................................................	27	6	3.00	18	11	0	0	0	7	0
................................................................................................................................................................................................................................................................................................................................................................................................TCATTCAATATAACGGC-----TGTGGTT..	24	6	2.67	16	9	0	0	0	7	0
............................................................................................................................................................................................................................................................................................................................................................................................TTTTTCATTCAATATAACGGC-----TGTGGT...	27	6	1.83	11	7	0	0	0	4	0
.....................................................................................................................................................................................................................................................................................................TGCTCACT-----AAGACCTCTTA-------TT----TGC..................................................................................	24	6	1.00	6	6	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TTTCATTCAATATAACGGC-----TGTGGTC..	26	6	0.83	5	0	0	0	0	5	0
...........................................................................................................................................................................................................................................................................................................................................................................................TTTTTTCATTCAATATAACGGC-----TGTGG....	27	6	0.67	4	4	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................TTCATTCAATATAACGGC-----TGTGG....	23	6	0.50	3	3	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TTTCATTCAATATAACGGC-----TGTG.....	23	6	0.50	3	3	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................TTTTTCATTCAATATAACGGC-----TGTGGTT..	28	6	0.50	3	2	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................TGCTCACT-----AAGACCTCTTA-------TT----TGCTCCT..............................................................................	28	6	0.50	3	3	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GCTCACT-----AAGACCTCTTA-------TT----TGC..................................................................................	23	6	0.33	2	2	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................TTTTTCATTCAATATAACGGC-----TGTG.....	25	6	0.33	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................TTCATTCAATATAACGGC-----TGTGGTT..	25	6	0.33	2	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................TCATTCAATATAACGGC-----TGTGGTTTC	26	6	0.33	2	2	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................T-----AAGACCTCTTA-------TT----TGCTCCTCCC-------------------------------............................................	24	6	0.33	2	0	0	0	0	2	0
...............................................................................................................................................................................................................................................................................................................................................................................................TTCATTCAATATAACGGC-----TGTGGT...	24	6	0.33	2	2	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCTTA-------TT----TGCTCCTCCC-------------------------------AAT--ATTTT..................................	25	6	0.33	2	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................TCACT-----AAGACCTCTTA-------TT----TGCTCC...............................................................................	24	6	0.33	2	0	0	0	0	2	0
........................................................................................................................................................................................................................................................................................................................TCTTA-------TT----TGCTCCTCCC-------------------------------AAT--ATTT...................................	24	6	0.33	2	2	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................TTTTTCATTCAATATAACGGC-----TG.......	23	6	0.33	2	2	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................TCATTCAATATAACGGC-----TGTGGTC..	24	6	0.33	2	0	0	0	0	2	0
.............................................................................................................................................................................................................................................................................................................................................................................................TTTTCATTCAATATAACGGC-----TGTGG....	25	6	0.33	2	2	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................TCATTCAATATAACGGC-----TGTGGTTT.	25	6	0.33	2	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................TTTCATTCAATATAACGGC-----TGTGGC...	25	6	0.33	2	0	0	0	0	2	0
................................................................................................................................................................................................................................................................................................................................................................................................TCATTCAATATAACGGC-----TGTGGT...	23	6	0.33	2	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................CATTCAATATAACGGC-----TGTGG....	21	6	0.33	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................TA-------TT----TGCTCCTCCC-------------------------------AAT--ATTTTTT................................	24	6	0.17	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TTTTCATTCAATATAACGGC-----TGTGGTT..	27	6	0.17	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TTTTCATTCAATATAACGGC-----TGTGGT...	26	6	0.17	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................CATTCAATATAACGGC-----TGTGGT...	22	6	0.17	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................T--ATTTTTTTTCATTCAATATAACGGC-----.........	26	6	0.17	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................TTTCATTCAATATAACGGC-----TGTGGTA..	26	6	0.17	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................ATTCAATATAACGGC-----TGTGGT...	21	6	0.17	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................TTTATGCTCACT-----AAGACCTCT....................................................................................................	21	6	0.17	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TTTCATTCAATATAACGGC-----TGT......	22	6	0.17	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTCATTCAATATAACGGC-----TG.......	25	6	0.17	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................ACCTCTTA-------TT----TGCTCCTCCC-------------------------------AAT--ATT....................................	26	6	0.17	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................TCACT-----AAGACCTCTTA-------TT----TGCTCCTCCA-------------------------------............................................	28	6	0.17	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TA-----TTTATGCTCACT-----AAGACCTCTTA-------TT----.....................................................................................	27	6	0.17	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................TCATTCAATATAACGGC-----TGT......	20	6	0.17	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................TTTTTTCATTCAATATAACGGC-----TGT......	25	6	0.17	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................GCTCACT-----AAGACCTCTTA-------TT----TGCTCC...............................................................................	26	6	0.17	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................TTCATTCAATATAACGGC-----TGTGGTC..	25	6	0.17	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................T-----AAGACCTCTTA-------TT----TGCTCCTCCC-------------------------------A...........................................	25	6	0.17	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................TCACT-----AAGACCTCTTA-------TT----TGCTCCT..............................................................................	25	6	0.17	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TTTCATTCAATATAACGGC-----TGTGGTTTC	28	6	0.17	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................TATATA-----TTTATGCTCACT-----AAGACCTC.....................................................................................................	26	6	0.17	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................TTCAATATAACGGC-----TGTGGC...	20	6	0.17	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................TTTTTCATTCAATATAACGGC-----TGT......	24	6	0.17	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................T-----AAGACCTCTTA-------TT----TGCTCCTCC............................................................................	23	6	0.17	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................TGCTCACT-----AAGACCTCTTA-------TT----TGCTC................................................................................	26	6	0.17	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TTTCATTCAATATAACGGC-----TGTGGTTT.	27	6	0.17	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................AAGACCTCTTA-------TT----TGCTCC...............................................................................	19	6	0.17	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................CAATATAACGGC-----TGTGGT...	18	6	0.17	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................TTCATTCAATATAACGGC-----TGTGGTTT.	26	6	0.17	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................TCATTCAATATAACGGC-----TGTGG....	22	6	0.17	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCTTA-------TT----TGCTCCTCCC-------------------------------AAT--ATTTTT.................................	26	6	0.17	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................T-----AAGACCTCTTA-------TT----TGCTCCTCCC-------------------------------AA..........................................	26	6	0.17	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................TTTTTCATTCAATATAACGGC-----TGTGGC...	27	6	0.17	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................TGCTCACT-----AAGACCTCTTA-------TT----TG...................................................................................	23	6	0.17	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TA-----TTTATGCTCACT-----AAGACCTCTTA-------...........................................................................................	25	6	0.17	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................TTTTTTCATTCAATATAACGGC-----TG.......	24	6	0.17	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................TTCAATATAACGGC-----TGTGGT...	20	6	0.17	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................GCTCACT-----AAGACCTCTTA-------TT----TGCTCCTC.............................................................................	28	6	0.17	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................TCACT-----AAGACCTCTTA-------TT----TGCTCCTC.............................................................................	26	6	0.17	1	1	0	0	0	0	0
..............................................................................................................................................................................TATT-------------------------------------------------------------------------------------------------ATATATATA-----TTTATGCTCAC...................................................................................................................	24	7	0.14	1	1	0	0	0	0	0
..............................................................................................................................................................................TATT-------------------------------------------------------------------------------------------------ATATATATA-----TTTATGCTCACT-----.............................................................................................................	25	7	0.14	1	0	0	0	0	1	0
..............................................................................................................................................................................TATT-------------------------------------------------------------------------------------------------ATATATATA-----TTTATGCTCACT-----A............................................................................................................	26	7	0.14	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................CTTA-------TT----TGCTCCTCCC-------------------------------AAT--ATTT...................................	23	7	0.14	1	1	0	0	0	0	0
..............................................................................................................................................................................TATT-------------------------------------------------------------------------------------------------ATATATATA-----TTTATGCTCACT-----AAG..........................................................................................................	28	7	0.14	1	1	0	0	0	0	0
...........................................................................................................................................................................TGTTATT-------------------------------------------------------------------------------------------------ATATATATA-----TTTATGCTCAC...................................................................................................................	27	7	0.14	1	1	0	0	0	0	0
................................................................................................................................................................................TT-------------------------------------------------------------------------------------------------ATATATATA-----TTTATGCTCACT-----AAGAC........................................................................................................	28	7	0.14	1	1	0	0	0	0	0
..............................................................................................................................................................................TATT-------------------------------------------------------------------------------------------------ATATATATA-----TTTATGCTCACT-----AA...........................................................................................................	27	7	0.14	1	1	0	0	0	0	0
................................................................................................................................................................................TT-------------------------------------------------------------------------------------------------ATATATATA-----TTTATGCTCACT-----AAGACC.......................................................................................................	29	7	0.14	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................TATATA-----TTTATGCTCACT-----AAGACC.......................................................................................................	24	7	0.14	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................TATATATA-----TTTATGCTCACT-----AAGACC.......................................................................................................	26	7	0.14	1	0	0	0	0	1	0
...........................................................................................................................................................................TGTTATT-------------------------------------------------------------------------------------------------ATATATATA-----TTTATGCTCACT-----A............................................................................................................	29	7	0.14	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................TTCAATATAACGGC-----TGTCC....	19	7	0.14	1	1	0	0	0	0	0
.................................................................................................................................................................................T-------------------------------------------------------------------------------------------------ATATATATA-----TTTATGCTCAC...................................................................................................................	21	7	0.14	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................ATATA-----TTTATGCTCACT-----A............................................................................................................	18	8	0.13	1	1	0	0	0	0	0

dsi_5510

2r:2405412-2405561 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-9.1	-8.5	-8.5