ID:

dsi_5460

 Coordinate:

3l:16196819-16196968 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-7.8 -6.8

Flybase annnotation

exon [3l_16196642_16196818_+]; exon [3l_16196633_16196818_+]; CDS [3l_16196753_16196818_+]; CDS [3l_16196753_16196818_+]; intron [3l_16196819_16197392_+]; intron [3l_16196819_16197392_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGGATATAATCAACGGGATCCTGGCCATGGACACGGAACGAATCCGTGAGGTGAGCAAAGCGGGCCGAATTTTCCCTCCGGCAATGAGAAAGGAGGTTATCCTGGTCTCCATTGGCTGTCTTTCATGTATACATTCCTCTTTCTGACTGCTCCATGTTGGTCTGACCGCGTGGCTGGATCGCATTGCCTATATACATGCGTATATATGTAAGCCACATGAACACAGTGCCTTATAATTCGGCATGGGCAC
****************************************************......................(((((............)))))...******************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 O001
Testis
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 M023
head
....................................................GAGCAAAGCGGGCCGAATTTT................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...........AACGGGATCCTGGCCATGGAC.......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................................................................TCCGGCAATGAGAAAGGAG........................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................TCCTGGCCATGGACACGGAACG.................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
..GATATAATCAACGGGATCCTG................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................GTCTGACCGCGTGCCTG.......................................................................... 17 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......TAATCAACGGGATCCTGGCCATGGACA......................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..................TCCTGGCCATGGACACGGAACGAATC.............................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................CCGGCAATGAGAAAGGAGGTTA....................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................CGAATTTTCCCTCCGGCAA...................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................CATGGTGGTCTAACCGCG................................................................................ 18 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................TCCCTCCGGCAATGAGAAAGG............................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................GGCCGAATTTTCCCTCCG.......................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................AATTCGGCATGGGCA. 15 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................................TAGTCATATGAACACAGTGCC.................... 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................TTCCTATTTCTGACTG..................................................................................................... 16 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0
...............................................................GCCGAAGTTTCCCTC............................................................................................................................................................................ 15 1 10 0.20 2 0 1 0 0 0 0 0 0 1 0
..........................................................AGCGGGCCGGATTATCTC.............................................................................................................................................................................. 18 3 20 0.15 3 0 0 0 0 0 0 0 0 0 3
...............................................................................................................................................................GTCTGACCGCGTGCC............................................................................ 15 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................TCCGACCGCGTGCGTGGAT....................................................................... 19 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................TCTGACCGCGTGCCT........................................................................... 15 1 9 0.11 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................GCTCTTTCTGAAGGCTCCA................................................................................................ 19 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0
....................................................................................TGTGAAAGTAGGTTATC..................................................................................................................................................... 17 2 12 0.08 1 0 1 0 0 0 0 0 0 0 0
.............................................................AGGCCGAAGTTTCCCTC............................................................................................................................................................................ 17 2 14 0.07 1 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................TATTCATCTTTCTGACTGCC................................................................................................... 20 3 16 0.06 1 0 0 1 0 0 0 0 0 0 0
.................................................................................CAGTGTGAAAGTAGGTTAT...................................................................................................................................................... 19 3 17 0.06 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TGTAGGACACATGAACA........................... 17 2 18 0.06 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................GTCTCCATTGGCTCTG.................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................GCTCTCTCTGAATGCTCCA................................................................................................ 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

ACCTATATTAGTTGCCCTAGGACCGGTACCTGTGCCTTGCTTAGGCACTCCACTCGTTTCGCCCGGCTTAAAAGGGAGGCCGTTACTCTTTCCTCCAATAGGACCAGAGGTAACCGACAGAAAGTACATATGTAAGGAGAAAGACTGACGAGGTACAACCAGACTGGCGCACCGACCTAGCGTAACGGATATATGTACGCATATATACATTCGGTGTACTTGTGTCACGGAATATTAAGCCGTACCCGTG
*******************************************************************************************************************************************************......................(((((............)))))...**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR902009
testis
 SRR618934
dsim w501 ovaries
 M053
female body
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
......................................................................................TCTTTCCTCCACTAGGTC.................................................................................................................................................. 18 2 12 7.17 86 50 0 6 12 0 6 8 0 1 3
......................................................................................TCTTTCCTCCACTAG..................................................................................................................................................... 15 1 11 5.27 58 51 1 3 0 0 2 0 0 1 0
......................................................................................TCTTTCCTCCACTAGG.................................................................................................................................................... 16 1 3 3.00 9 9 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AGTATACTTGTGTCACGGAAAA................ 22 3 1 2.00 2 0 2 0 0 0 0 0 0 0 0
......................................................................................................................AAAAAGTACATATGTAAGGAGAAA............................................................................................................ 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................ATGTAAGGAGGAAGACTGACG.................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......................................................................................TCTTTCCTCCACTAGGT................................................................................................................................................... 17 2 20 0.75 15 11 3 0 0 0 1 0 0 0 0
......................................................................................TCTTTCCTCCATTAGGTC.................................................................................................................................................. 18 2 4 0.50 2 2 0 0 0 0 0 0 0 0 0
...........................................GGTACTCCACTTGGTTCGCC........................................................................................................................................................................................... 20 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0
............................................GCACTCCAAACGTTTCCCC........................................................................................................................................................................................... 19 3 20 0.35 7 2 1 1 0 0 1 2 0 0 0
......................................................................................TCTTTCCTCCATTAGG.................................................................................................................................................... 16 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................ATCTTTCCTCCACTAGG.................................................................................................................................................... 17 2 9 0.33 3 3 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AAAAATTAAGCCGTACCCGTA 21 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0
.....................................................................................ATCTTTCCTCCACTAGGTC.................................................................................................................................................. 19 3 20 0.20 4 3 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGGGCGCACCGTCCTAGC..................................................................... 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 1
..............TCCTAGGACCGGTACCTA.......................................................................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................CTTTCCTCCACTAGG.................................................................................................................................................... 15 1 11 0.09 1 1 0 0 0 0 0 0 0 0 0
......................................................................................TCTTTCCTCCATTAG..................................................................................................................................................... 15 1 13 0.08 1 1 0 0 0 0 0 0 0 0 0
..................AGGACCGCTAGCTGTGC....................................................................................................................................................................................................................... 17 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0
................................................TCCACGCGTTTCGCCCGACA...................................................................................................................................................................................... 20 3 16 0.06 1 0 0 0 0 0 0 0 1 0 0
.....................................................................................ATCTTTCCTCCATTAGGTC.................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......................................................................................TCTTTCCTCCATTAGGT................................................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......................................................................................TCTTTCCTCCATTAGGTCG................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Generated: 04/24/2015 at 02:51 AM