ID:

dsi_5443

Coordinate:

3l:7537455-7537604 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-16.5	-16.5	-16.4	-16.4

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

ATACTTTCCGTGAATCGCAGTAACTTTTCGGTTGGATGTCAGACTGTGGGGTAAAAAGAACAAAATATATATAATTTGCTTTTAATCGCGGCATGAGAAATGTATTCCACTGTGTCGTATCTATACCATCACTATTATCGTATCCATGTATAATGCTCCTATATAATGGTCATGCTAGCTTTATATCACCCTTATATTATATTATATTTATTCTACCGATTACCAAGTAAAGCATGTAAAACTAACGAAA ************************************************((................((((((...(((.........(((((((..........(((.(((((.((((.(((((.....................)))))))))....))))).))))))))))))).))))))............))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	SRR902009 testis
...................................ATGTCAGACTTTGGGGTAA....................................................................................................................................................................................................	19	1	1	2.00	2	0	2
.......................................................................................................................................TATCGTATCCATGTATAATGC..............................................................................................	21	0	1	2.00	2	2	0
....................................................................................................................................................................................................................CTACCGATTACCAAGTAAAGC.................	21	0	1	1.00	1	1	0

Anti-sense strand reads

TATGAAAGGCACTTAGCGTCATTGAAAAGCCAACCTACAGTCTGACACCCCATTTTTCTTGTTTTATATATATTAAACGAAAATTAGCGCCGTACTCTTTACATAAGGTGACACAGCATAGATATGGTAGTGATAATAGCATAGGTACATATTACGAGGATATATTACCAGTACGATCGAAATATAGTGGGAATATAATATAATATAAATAAGATGGCTAATGGTTCATTTCGTACATTTTGATTGCTTT ************************************************((................((((((...(((.........(((((((..........(((.(((((.((((.(((((.....................)))))))))....))))).))))))))))))).))))))............))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	O001 Testis	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M023 head
.........................................................................................................................................AGCATAGGTAGATAT..................................................................................................	15	1	10	2.60	26	0	23	0	0	0	3	0	0	0
.....................................................................................................................ATAGATATGGTAGTGATA...................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0
.....................................................................................................CATAAGGTGACACAGCATAGA................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0
......................................................................................................................AAGATATGGTAGTGATAATAG...............................................................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0
..................................................................................................................AGCATAGATATGGTAGTGATA...................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...................................................................................................TACATAAGGTGACACAGCATA..................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0
....................................................................................................................AATAGATATGGTAGTGATA...................................................................................................................	19	1	1	1.00	1	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................ATTACCCTTCCGATCGAAATA..................................................................	21	3	2	0.50	1	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................AAAAAAAAAGATGGCTAATGGTT........................	23	3	3	0.33	1	1	0	0	0	0	0	0	0	0
....................................................................................................................................AGAATCGCATCGGTACATAT..................................................................................................	20	3	4	0.25	1	0	0	0	0	0	0	1	0	0
........................................................................................................................................AAGCATAGGTAGATAT..................................................................................................	16	2	20	0.25	5	0	5	0	0	0	0	0	0	0
...............................................................................AAAATTGGCGCCATACT..........................................................................................................................................................	17	2	6	0.17	1	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................AAAATATAGTGGGGATAT......................................................	18	2	6	0.17	1	0	0	0	0	0	0	0	1	0
........................................................................................................AAGGTGACGCAGCAT...................................................................................................................................	15	1	8	0.13	1	0	0	0	1	0	0	0	0	0
......................................................................................................................TAGATAGGGTAGTGCTA...................................................................................................................	17	2	12	0.08	1	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................ATGGCTCATTGAGTACATT...........	19	3	16	0.06	1	0	0	0	1	0	0	0	0	0
................................................................................AAATTGGCGCCATACT..........................................................................................................................................................	16	2	18	0.06	1	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................ATATAAATAAGATGT.................................	15	1	20	0.05	1	0	0	0	1	0	0	0	0	0
....................................ACAGTCTGAGACCCCCTA....................................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	1	0	0	0	0	0
..........................................................................................................................................GCATAGGTAGATATAACCA.............................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	1
..................................................................................................................................................................TAGGACCAGTACGATC........................................................................	16	2	20	0.05	1	0	0	0	0	0	0	1	0	0

Generated: 04/24/2015 at 10:22 AM