ID:

dsi_5418

 Coordinate:

2r:14245649-14245864 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [2r_14245900_14245992_+]; five_prime_UTR [2r_14245865_14245899_+]; exon [2r_14245865_14245992_+]; five_prime_UTR [2r_14245510_14245648_+]; exon [2r_14245510_14245648_+]; intron [2r_14245649_14245864_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCTTTTTGATGTCTTGTGCATTCGACATCGTTTAGTTTTGCTGTAAAATAGTAAGTTTATTGTGAAATATCAAACGCCAACTGGTAGTAAACACTAAAAAGGCAAGGCAGTGAACCGATTTCTGCCAAGGCTTCGAATGAAACAACCAAATGTCAAGCGGAAATATTTGGCATACATTTTTGCAAAACGCCATGTTGGCCGCTCAAACATAACCTCAACAAAAGCAAAATCTTATGTGGCCCGAAACTAATAAATTGTGATTCCAGGCGCAGACAAACGGCCGCGTAGAAAGTCAACGAAGATGTCGCGTTTCTTT
**************************************************...((((((((((((....)))...(((((((((((((....))))...((((..(((((.((.....)).)))))...)))).(((((......((((((((.........))))))))....)))))..........))).)))))).(((...((((((...................))))))))).......)))))))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M053
female body
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
............................................................................................................................................................................................................................................................................................GTAGAAAGTCAACGAAGATGT........... 21 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................CAGACAAACGGCCGCGTAGAAAGT....................... 24 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................TAGCGCAGACAAACGGCCGCGTA............................. 23 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................AACTAATAAATTGTGATTCCAGGC................................................ 24 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................AGACAAACGGCCGCGTAGAAAGT....................... 23 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................TAGAAAGTCAACGAAGATGTCGCGTT..... 26 0 1 2.00 2 0 0 0 0 0 1 0 0 0 1 0
..........................................................................................................................................................................................................................................................................................GCGTAGAAAGTCAACGAAGATGTCGCG....... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.........................CATCGTTTAGTTTTGC................................................................................................................................................................................................................................................................................... 16 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................ACGGCCGCGTAGAAAGTCAAC................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...............................TTAGTTTTGCTGTAAAATA.......................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................GCGTAGAAAGTCAACG.................. 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................ACAAACGGCCGCGTAGAAAGTCAACGAA................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................GCAGACAAACGGCCGCGTAGAA.......................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................ACAAACGGCCGCGTAGAAAGTCAAC................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................GTAGAAAGTCAACGAAGAT............. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................GCAGACAAACGGCCGCGTAGAAAGTCAA.................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.................................................AGTAAGTTTATTGTGAAA......................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................CGCGTAGAAAGTCAACGAAGATGTCGCG....... 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................AACGGCCGCGTAGAAAGT....................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................CGACATCGTTTAGTTTTGC................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................AAACGGCCGCGTAGAAAGTCAACGAAG............... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................TTAGTTTTGCTGTAAAATAGC........................................................................................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...TTTTGATGTCTTGTGCATTCGACATC............................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................ACGGCCGCGTAGAAAGTCAACGAAGAT............. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................GCGCAGACAAACGGCCGC................................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................AAACGGCCGCGTAGAAAGTC...................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................AAACGGCCGCGTAGAAAG........................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..........................ATCGTTTAGTTTTGCTGTAAAAT........................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................TCGACATCGTTTAGTTTTGCT.................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................AAACGGCCGCGTAGAAAGTCAACGA................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................AGCGCAGACAAACGGCCGCGTAGAAAGTC...................... 29 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................TTTAGTTTTGCTGTAAAATAG......................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................TAGAAAGTCAACGAAAATGTCGCGTTTCT.. 29 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................GTAGAACGCCAACGAAGATGTCGCGTT..... 27 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................CAGACAAACGGCCGCGTAGAAAGTCAAC................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................ACGGCCGCGTAGAAAGTC...................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................GACAAACGGCCGCGTAGA........................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................CGGCCGCGTAGAAAGTCAACGAAGAT............. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................CGCGTAGAAAGTCAACGAAG............... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................AAACGGCCGCGTAGAAAGTCAACGAAGA.............. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................GACATCGTTTAGTTTTGCTGTAAA............................................................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CAAACGGCCGCGTAGAAAGTCAAC................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................GTAGAAAGTCAACGAAGATGTCGC........ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................AAACGGCCGCGTAGA........................... 15 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
....................................TTTGCTGTAAAATAG......................................................................................................................................................................................................................................................................... 15 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................AACGGCCGCGTAGAA.......................... 15 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................ATTTCTGCCCAGGCTCTGAAT.................................................................................................................................................................................. 21 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................ATGTCAAGCGGAAGGATTTT................................................................................................................................................... 20 3 10 0.20 2 0 0 0 0 0 0 0 0 2 0 0
.............................................................................................................................................................................................................................................................ATTGTGATTCCAGGT................................................ 15 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................................................................................GAACAAACGGCCTCGTAGA........................... 19 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AGAAAAACTACAGAACACGTAAGCTGTAGCAAATCAAAACGACATTTTATCATTCAAATAACACTTTATAGTTTGCGGTTGACCATCATTTGTGATTTTTCCGTTCCGTCACTTGGCTAAAGACGGTTCCGAAGCTTACTTTGTTGGTTTACAGTTCGCCTTTATAAACCGTATGTAAAAACGTTTTGCGGTACAACCGGCGAGTTTGTATTGGAGTTGTTTTCGTTTTAGAATACACCGGGCTTTGATTATTTAACACTAAGGTCCGCGTCTGTTTGCCGGCGCATCTTTCAGTTGCTTCTACAGCGCAAAGAAA
**************************************************...((((((((((((....)))...(((((((((((((....))))...((((..(((((.((.....)).)))))...)))).(((((......((((((((.........))))))))....)))))..........))).)))))).(((...((((((...................))))))))).......)))))))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
..........................................................................................................TGTCACTTGGCTAAAGACGGT............................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0
................................................................................................................................................................................................................................GTTTTAGAATACACCGGGCTT....................................................................... 21 0 1 1.00 1 0 1 0 0
.........................................................................................................TGGTCACTTGGCTAAAGACGGTT............................................................................................................................................................................................ 23 2 1 1.00 1 1 0 0 0
..........................................................................................................TGTCACTTGGCTAAAGACGGTT............................................................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0
..........................................................................................................................ACGGTTCCGATGCTTACT................................................................................................................................................................................ 18 1 2 0.50 1 0 0 1 0
..................................................................................................................................................................................................TTTCGGCGAGTTTGTATTGGA..................................................................................................... 21 3 4 0.50 2 2 0 0 0
..................................................................................................................................................................................................................................................................................................TCAGTTGCTTGTACAG.......... 16 1 7 0.29 2 0 0 2 0
..................................................................................................................................GAAGCTTAATTTGTTG.......................................................................................................................................................................... 16 1 6 0.17 1 0 0 1 0
.....................................................................................................................................................................................................CGGCGAGGCTGTATTGG...................................................................................................... 17 2 10 0.10 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:14245599-14245914 + dsi_5418 TCTTTT----TGATGTCTTGTGCATTCGACATCGTTTAG-TTTTGCTG--TA-AAATAGTAAGT-----------TTATTGTG-AAATATC--A-------------------------------AACGCCAACT-GGTAGTAAACACTAA-------------AAAG--GCAAGG-CAGTGAAC---CGATTTCT------------GCCAA-GGC----------------TTCGAATGAAAC-AACC--AA--ATGTCAAGCG--------------------------GAAATAT-TTGGCA-TAC-AT-TTTTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACAA-AAG-CAAAA------TCTTATGTGGC--CC---------GA--------A-------ACTAAT----------------------------------A----AAT-------TGTG-ATTC--------CAGG-CGCA-----GACAAACGG---C-CGCGTAGAAAGTCAACGAA-GATGTCGCGTTTCTTT
droSec2 scaffold_1:11052536-11052851 + TCTTTT----TGATGTCTTGTGCATTCGACATCGTTTAG-TTTTGCTG--TA-AAATAGTAAGT-----------TTATTGTG-AAATATC--A-------------------------------AACGCCAAGT-GGTAGTAAACACTGA-------------AAAG--TCAAGG-CAGTGAAC---CGATTTCT------------GCCAA-GGC----------------TTCGAATGAAAC-AACC--AA--ATGTCAAACG--------------------------GAAATAT-TTGGCA-TAC-AT-TTTTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACAA-AAG-CAAAA------TCTTATGTGGC--CC---------GA--------A-------ACTAAT----------------------------------A----AAT-------TGTG-ATTC--------CAGG-CGCA-----GACAAACGG---C-CGCGTAGAAAGTCAACGAA-GATGTCGCGTTTCTTT
dm3 chr2R:13553272-13553586 + TCTTTT----TGATGTCTTGTGCATTCGACATCGTTTAG-TTTTGCTG--TA-AAATAGTAAGT-----------TTATTGTG-AAATATC--A-------------------------------AACGCCAGGT-GGTAGTAAACACTTA-------------AAAA--GCAAGG-CAGTGAAC---CGATTTCT------------GCCAG-GGC----------------TTCGAATGAAAC-AACC--AA--ATGTCATGCG--------------------------GAAATAT-TTGGCA-TAC-GT-TTTTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACAA--AG-CAAAA------TCTTATGTGGC--CC---------GA--------A-------ACTAAT----------------------------------A----AAT-------TGTG-ATTC--------CAGG-CGCA-----GACAAACGG---C-CGCGTAGAAAGTCAACAAA-GATGTCGCGTTTCTTT
droEre2 scaffold_4845:7782763-7783078 + TCTTTT----TGATGTCTTGTGCATTCGACATCGTTTAG-TTTTGCTG--TA-AAATAGTAAGT-----------TTATTGTG-AAATATT--A-------------------------------AGAGCCAGGT-GGTGATAAACACTCA-------------AAAG--GCAAGA-CAGTGAAC---CGATTTCT------------GGCAA-GGC----------------TTCGAATGAAGC-AACC--AT--AAGTCCAGCG--------------------------AAAACAT-TTGGCA-TGC-AT-TTCTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACAA-TAG-CAAAA------ACTTATGTGGC--CA---------GA--------A-------ACTAAT----------------------------------A----AAT-------TGTG-ATTC--------CAGG-CGCA-----GACAAACGG---C-CGCGTAGAAAGTCAACGAA-GATGTCGCGTTTCTTT
droYak3 2R:15630132-15630447 - TCTTTT----TGATGTCTTGTGCATTCGACATCGTTTAG-TTTTGCTG--TA-AAATAGTAAGT-----------TTATTGTG-AAATATT--A-------------------------------AGCGCCAGGT-GGTGATAAACACTTA-------------AAAG--GCAAGA-CAGTGAAC---CGATTTCT------------GGCAA-GGC----------------TTCGAATGAAGC-AACT--AT--AAGTCCAGCG--------------------------GAAACAT-TTGGCA-TGC-AT-TTTCGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACAA-AAG-CAAAA------ACTTATGTGGC--CA---------GA--------A-------ACTAAT----------------------------------A----AAT-------TGTG-ATTC--------CAGG-CGCA-----GACAAACGA---C-CGCGTAGAAAGTCAACGAA-GATGTCGCGTTTCTTT
droEug1 scf7180000409672:1553681-1553997 - TCTTTT----TGATGTCTTGTGCATTCGACATCGTTTAG-TTTTGCTG--TAAAAATAGTAAGT-----------TTATTGTG-AAATACT--A-------------------------------AGCGCTAAGT-GGTGGTAAACAATAA-------------AAAG--ACAAGA-CAACGAAG---CGATTTCT------------ATAAA-CGC----------------TTTGAATTAAAC-GATC--AA--AAATCATGCG--------------------------AAAAACA-CTGCCA-GAA-TT-TTTTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACAA-AAG-CAAAA------ACTTATGTGGC--CC---------GA--------A-------ACTAAT----------------------------------A----AAT-------TGTG-ATTC--------CAGG-CGCA-----GACAAACGG---C-CGCGTAGAAAGTCAACGAA-GATGTCGCGTTTCTTT
droBia1 scf7180000301754:3027046-3027373 - TCTTTT----TGATGTCTTGTGCATTCGACATCGTTTAG-TTTTGCTG--TAAAAATAGTAAGT-----------TTATTGTG-AAATATT--G-------------------------------AGCGCCCGGT-GGTGGTAAACACACA-------------AAAT--AAAAGG-CAGTGAAC---TGCTCTAT------------CAAAG-GCC----------------TTTGAACAAAGC-AAAC--CA--AAAGCATGAT--------------------------GATATCT-TTGGGC-GAA-AT-TTTTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACCA-AAG-CAAAA------ACTTATGTGGC--CC---------GA-ATAA---A-------ACGAAT----------------------------------T----AATTGTGATTTGTA-ATTC--------CAGG-CGCA-----GACAAACGG---C-CGCGTAGAAAGTCAACGAA-CATGTCGCGTTTCTTT
droTak1 scf7180000415138:164950-165277 - TCTTTT----TGATGTCTTGTGCATTCGACATCGTTTAG-TTTTGCTG--TAAAAATAGTAAGT-----------TTATTGTG-AAATATT--G-------------------------------AGCGCCCGGC-GGTGGTAAACACACA-------------AAAG--AAAAGC-CAGTGAAT---CAATTTCT------------CGAGA-GCC----------------ATCAAGCGAAAC-CAGC--CA--TAAACAGGCG--------------------------GAAACGT-TTGGCA-GAA-AT-TTTTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACCA-AAG-CAAAA------ACTTTTGTGGC--CC---------GA-ATAA---A-------TTTAAT----------------------------------A----AATGTGAATCTTCA-ATTC--------CAGG-CGCA-----GACAAACGG---C-CGCGTAGAAAGTCAACGAA-GATGTCGCGTTTCTTT
droEle1 scf7180000491214:708057-708375 - TCTTTT----TGATGTCTTGTGCATTCGACATCGTTTAG-TTTTGCTG--TAAAAATAGTAAGT-----------TTATTGTG-AAATATC--C-------------------------------AGCACAAAGT-TGTGATAAACACTAA-------------GAAG--AGAAGG-CGGTGTAC---CGATTTCT------------ATAAA-GGT----------------TATAAATGAGAC-GACC--GA--TAATCCGGCG--------------------------AAAACCT-TTGGCA-GAA-AT-TTTTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACAA-AAG-CAGCA------ACTTATGTGGC--CC-------C-AA--------A-------ACTAAT----------------------------------A----CAT-------TTTAAATTG--------CAGG-CACA-----GACAAACGG---C-CGCGTAGTAAGTCAACGAA-CATGTCGCGTTTCTTT
droRho1 scf7180000777956:244109-244426 - TCTTTT----TGATGTCTTGTGCATTCGACATCGTTTAG-TTTTGCTG--TAAAAATAGTAAGT-----------TTATTGTG-AAATATT--G-------------------------------AGCACAACGT-GGCGGTAAACAGTCA-------------AAGA--AGAAGG-CGGTGAAC---CTATTTCT------------ATAAA-GGC----------------TCTGCATGGAAC-GACC--AT--TATGCTGCCG--------------------------GAAACCT-TTGGCA-GAA-AT-TTTTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACAA-AAG-CAGCA------ACTTATGTGGC--CC---------GA--------A-------ACTAAT----------------------------------A----AAT-------TGTAAATTC--------CAGG-CGCA-----GACAAACGG---C-CGTCTAGAAAGTCAACGAA-CATGTCGCGTTTCTTT
droFic1 scf7180000453948:1896813-1897134 - TCTTTT----TGATGTCTTGTGCATTCGACATCGTTTAG-TTTTGCTG--TAAAAATAGTAAGT-----------TTATTGTG-AAATACT--G-------------------------------AGAGCCGAGT-GGTAG-AAGCACTAA-------------AATG--ACAAGG-CGGAAAAC---CGATTTTC------------CTAAA-GGC----------------CTTCCATTAAAC-AATC--TG--CAATCATGCA--------------------------GAAACCT-TTGGCA-GAA-TTTTTTTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACCG-AAG-CAAAA------ACTTATGTGGC--CC---------CA--------A-------ACTAATAAACT-----------------------------A----AAT-------TGTG-ATTC--------CAGG-CGCA-----GACAAACGC---C-CTCGTAGAAAGTTAACGAA-GATGTCGCGTTTCTTT
droKik1 scf7180000302385:301721-302028 + TCTTTT----TGATGTCTTGTGCATTCGACAGCGTTTAG-TTTTGCTG--TAAAAATAGTAAGT-----------TT-TCGTG-AAAATCC--A-------------------------------AGCCCCACCCAGGTG-AAAACG-TGC-------------CCAG--CCGAGACCGGCGAGC---GGATTTTC------------CGAAA-GGT----------------CATGG---------------------------G----------------GGAACCGGCGAGAAAC--TTGCGAATTC-AT-TTTCGCA-AACGCCATGTTGGCCGAGCGGCCAAACATAACCTCAACCA-GGGGCGAGA------AATTATGTGGC--CC---------GA--------A-------ACTAAT----------------------------------A----GAT------TTGT--ATTC--------CAGG-TGCA-----GACAAACGG---C-CGCGTGGAAAGTCAACGAA-CATGTCGCGCTTCTTT
droAna3 scaffold_13266:10628823-10629132 - TCTTTT----TGA-----------TTCGACATCGTT---------------AAAAAAAGTAAGTAAAAATGACAGTTATTGTG-AAATATT--G-------------------------------TGCCCTGCGA-ATAGGGAAATAGTTA-------------AAAG--CATCGA-CCCAGGGC---GTGTTTGA------------CTAAA-GGT----------------TTTGT-T-AAAA-ATCC--AA--TGATTGAGTG-CA-----------------------AAAAACA-ATGCGAAAA--CA-TTTTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACCG-CCG-GAGA-------AATTATGTGGC--CA---------GA--------A-------AT-ATTTAAT------------------------------T---AC-----AATTTGTT-ATTC--------CAGG-TGCA-----GACTAACAG---C-CGTGTAGATAGTCCACGAA-CATGTCGCGTTTCTTT
droBip1 scf7180000396428:1056044-1056353 - TCTTTT----TGA-----------TTCGACATCGTT---------------AAAAAAAGTAAGTAAAAAAGACAGTTATTGTG-AAATATT--G-------------------------------TGCCCTGGAA-ATAGGTAAACAGTTG-------------AAAGTATCCACC-CAG--GGT---GTG--TTT------------GACTAAGG-----------------TTTGGTTAAAAA-AATC--AA--TGATTGAGCG-TA-----------------------AAAAACA-ATGCAAAAA--CA-TTTTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACCG-CCG-GAGA-------AATTATGTGGC--CT---------GA--------A-------AT-ATTTAAT------------------------------T---AG-----AATTTGTT-ATTC--------CAGG-TGCA-----GACAAACAG---C-CGTGTAGATAGTCCACGAA-CATGTCGCGTTTCTTT
dp5 3:10656450-10656778 - TCTTTT----AGATGTCTTGTGCATTCGACATCGTTT---TTTTGCTG--TAAAAATAGTAAGT-----------TTATT-TG-ATTTAAC--GTGTG------------TTCTGAC--------AATGCCAAGT-GGTTGC-----------GCGACGAGCGAAAAGCGTGCCGG-CAGTGAAT---TAAATTGTAGTTTTACACAG------------------------------------GG--TT--GTACGTCTCATTGG--------------------------CAAATTT-GTGGCA-TGCATT-TTTTGCAAAACGCCATGTTGGCCGC----TTATACATAACCTCAACAC--CG-TTCCA------AATTATGTGGC--TG-------TGGA--------T-------ATTAAA----------------------------------A----CAT-------TGTC-ATTC--------CAGG-TGCAGTGTAGACAAACGC---T-TGCGTAGAAACTAAAC-AA-CATGTCACGTTTCTTT
droPer2 scaffold_4:5985643-5985972 - TCTTTT----AGATGTCTTGTGCATTCGACATCGTTT---TTTTGCTG--TAAAAATAGTAAGT-----------TTATT-TG-ATTTAAC--GTGTG------------TTCTGAC--------AATGCCAAGT-GGTTGC-----------GCGACGAGCGAAAAGCGTGCCGG-CAGTGAAT---TAAATTGTAGTTTTACACAG------------------------------------GG--TT--GTACGTCTCATTGG--------------------------CAAATTT-GTGGCA-TGCATT-TTTTGCAAAACGCCATGTTGGCCGC----TTATACATAACCTCAACAC--CG-TTCCA------AATTATGTGGC--TG-------TGGA--------T-------ATTAAA----------------------------------A----CAT-------TGTC-ATTC--------CAGG-TGCAGTGTAGACAAACGG---CTTGCGTAGAAACTAAAC-AA-CATGTCACGTTTCTTT
droWil2 scf2_1100000004514:2798810-2799165 - TCTTTTCAGATGTTGCCTTGCATATAAAACATCGTTCCTTTTTTGCAGTTTAATAATAGTAAGTA----------TTATT-TGCAAACATT--T---GAAAGTGAAAC-----------------------------------AACACTAG-------------TAAA--GTAACA-C------ATGC--------------------------GGC----------------T-TGGAAGCTAA-ATTC--AA--TGTATTAACGC-AGTAGCGATTTAAGGAAATTGAG-TTAAAGT-TTGTG---AA-AT-TTTT------CGCCATGTTGGCCGC--TTTCAAACATAACCTCAAACGAAAT-CAAAAAAAAAAAATTGAATA----CC---------CA--------A-------ACGAAT--------GTGAACATGTCATCATATATATA---ATAC-TGT-------TACA-ATTT--------CAGTTTGCA-----AACAAACCGGAAA-CTCTAACAACAATAACAAACAATGTCTCGTTTCTTT
droVir3 scaffold_12875:11290608-11290932 + TCTT------TGATGTCTTGCGAAT--GACATCGTT------TTGCTG--TAATAATTGTAAGT------------TATTTTG-AAATACC--GTGAC----CGGAGCGGCT--------CTAAC----CAA---------------GTTGAGGACG-------A-------AAGC-CCAACAAGCGC--------------------------GGCATGTATTGCAACTCGCGCTG-ACAAAGA-TAACTTCG--TAATTGTG-G-CA-----------------------GAAAGTAGTTGTCA-----AT-ATTTGGCAAACGCCATGTTGGCCGC----CTGCACATAACCTCAACCG-C-----------------TCTGTGACACACAAGTCAA--GCAGCTAA-AATTGT------ATGT---------------------------------AATTT-----GTGTT--TT-ATTT--------ATTT-TGCA-----GA-AAACGG---CATAAGCAGAA--CTAAGTAC-CATGTCACGTTTCTTT
droMoj3 scaffold_6496:15632213-15632552 - TTTCTT----TGATGTCTTGCGAA--CGACATCGTT------TTGCTG--TAATAAATGTAAGT-----------TT-TTATG-AAATACAACGTATA------------TTGTTGC-A-TTAAG----CAA---------------GTTGAGGATT----------A--TCAAGC-CGATGGAT---T-------------------GTAAA--GT----ATTGCAATTCGCGTTC-ATTAAAT-TATATTTG--TAATTGTGTG-CA-----------------------AAAAGTGACTGTCA-----AT-GTTTGGCAAACGCCATGTTGGCCGC----TCAAACCTAACCTCAACCG-CTC-----------------TATGACACCTAAGTCAATGGCAGTTAAAAATTGTACTAATATT----------------------------------A----ATT-------TGTG-TTTTTTGTTTGTTTGT-TGCA-----GA-ACACGG---CATAAGCAGA--ATTAAACAA-CATGTCACGTTTCTTT
droGri2 scaffold_15245:13437577-13437916 - TTTCTT----TGATGTCTTGTGAAT--GACATCGTT-------TGCTG--TAATAATTGTAAGT-----------TT-TATTA-AAATACC--GTGAC------------TAGTGCGTATCTAAA----CAAGTT-GGCGCTACAAGTGCA-------------ACAT--GCAATG-C-GTGCAT---AG-----------------------------------CAAC---------AAGAAGA-AATC--AT--TGTTTTTGCGCCA-----------------------AATGCTGGCTGTCAATG--TT-TTTTGGCAAACGCCATGTTGGCCGC----TTGCACATAACCTCAACAC--CG-AACGA----ACAGT----TGACACCC---------CA-GTTA---------------AA-AATTAATGTGCATTTATCAT---ATGTATATATATATT-----GGCTT--TT-ATT---------TTGT-TGCA-----G-CAAACGG---CATAAGCAGA-AGTAAAC-AC-CATGTCGCGTTTCTTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCTTTT----TGATGTCTTGTGCATTCGACATCGTTTAG-TTTTGCTG--TA-AAATAGTAAGT-----------TTATTGTG-AAATATC--A-------------------------------AACGCCAACT-GGTAGTAAACACTAA-------------AAAG--GCAAGG-CAGTGAAC---CGATTTCT------------GCCAA-GGC----------------TTCGAATGAAAC-AACC--AA--ATGTCAAGCG--------------------------GAAATAT-TTGGCA-TAC-AT-TTTTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACAA-AAG-CAAAA------TCTTATGTGGC--CC---------GA--------A-------ACTAAT----------------------------------A----AAT-------TGTG-ATTC--------CAGG-CGCA-----GACAAACGG---C-CGCGTAGAAAGTCAACGAA-GATGTCGCGTTTCTTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAAGTCAACGAA-GATGT...........2112.00200110000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-----GACAAACGG---C-CGCGTAGAAAGT........................2412.00200110000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................A-------ACTAAT----------------------------------A----AAT-------TGTG-ATTC--------CAGG-C..........................................................2412.00220000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----GACAAACGG---C-CGCGTAGAAAGT........................2312.00202000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAAAGTCAACGAA-GATGTCGCGTT.....2612.00200000010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTAGAAAGTCAACGAA-GATGTCGCG.......2711.00100000000000010000
.............................CATCGTTTAG-TTTTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGG---C-CGCGTAGAAAGTCAAC....................2111.00100000010000000000
...................................TTAG-TTTTGCTG--TA-AAATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTAGAAAGTCAACG...................1611.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACGG---C-CGCGTAGAAAGTCAACGAA-................2811.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-----GACAAACGG---C-CGCGTAGAA...........................2211.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACGG---C-CGCGTAGAAAGTCAAC....................2511.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAAGTCAACGAA-GAT.............1911.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-----GACAAACGG---C-CGCGTAGAAAGTCAA.....................2811.00100000000000001000
.........................................................AGTAAGT-----------TTATTGTG-AAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTAGAAAGTCAACGAA-GATGTCGCG.......2811.00100000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGG---C-CGCGTAGAAAGT........................1811.00100000001000000000
..........................CGACATCGTTTAG-TTTTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGG---C-CGCGTAGAAAGTCAACGAA-G...............2711.00100000001000000000
...................................TTAG-TTTTGCTG--TA-AAATAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
...TTT----TGATGTCTTGTGCATTCGACATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGG---C-CGCGTAGAAAGTCAACGAA-GAT.............2711.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-CGCA-----GACAAACGG---C-CGC.................................1811.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGG---C-CGCGTAGAAAGTC.......................2011.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGG---C-CGCGTAGAAAG.........................1811.00100000010000000000
..............................ATCGTTTAG-TTTTGCTG--TA-AAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000001000000000
.........................TCGACATCGTTTAG-TTTTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGG---C-CGCGTAGAAAGTCAACGA..................2511.00101000000000000000
..................................TTTAG-TTTTGCTG--TA-AAATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-----GACAAACGG---C-CGCGTAGAAAGTCAAC....................2811.00110000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGG---C-CGCGTAGAAAGTC.......................1811.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAACGG---C-CGCGTAGA............................1811.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGG---C-CGCGTAGAAAGTCAACGAA-GAT.............2611.00100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTAGAAAGTCAACGAA-G...............2011.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGG---C-CGCGTAGAAAGTCAACGAA-GA..............2811.00101000000000000000
...........................GACATCGTTTAG-TTTTGCTG--TA-AA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGG---C-CGCGTAGAAAGTCAAC....................2411.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAAGTCAACGAA-GATGTCGC........2411.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGG---C-CGCGTAGA............................1520.50100000010000000000
.........................................TTTGCTG--TA-AAATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.50100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGG---C-CGCGTAGAA...........................1530.33100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-------TGTG-ATTC--------CAGG-T..........................................................1570.14100000000010000000
droSec2
TCTTTT----TGATGTCTTGTGCATTCGACATCGTTTAG-TTTTGCTG--TA-AAATAGTAAGT-----------TTATTGTG-AAATATC--A-------------------------------AACGCCAAGT-GGTAGTAAACACTGA-------------AAAG--TCAAGG-CAGTGAAC---CGATTTCT------------GCCAA-GGC----------------TTCGAATGAAAC-AACC--AA--ATGTCAAACG--------------------------GAAATAT-TTGGCA-TAC-AT-TTTTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACAA-AAG-CAAAA------TCTTATGTGGC--CC---------GA--------A-------ACTAAT----------------------------------A----AAT-------TGTG-ATTC--------CAGG-CGCA-----GACAAACGG---C-CGCGTAGAAAGTCAACGAA-GATGTCGCGTTTCTTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-----GACAAACGG---C-CGCGTAGAAAGT........................2513.0030120
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-----GACAAACGG---C-CGCGT...............................1812.0020020
.........................TCGACATCGTTTAG-TTTTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0021010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAAGTCAACGAA-GATGTCGC........2412.0020020
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAACGAA-GATGTCGCGTTTCTT.2411.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-----GACAAACGG---C-CGCGTAGAAA..........................2311.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGG---C-CGCGTAGAAAGT........................2011.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGTCAACGAA-GATGTC..........2011.0010010
.....................GCATTCGACATCGTTTAG-TTTTGCTG--T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGG---C-CGCGTAGAAAGTCAACGA..................2411.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAACGG---C-CGCGTAGAAAGTC.......................2311.0010100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAACGAA-GATGTCGC........1811.0010010
........................................TTTTGCTG--TA-AAATAGTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG---C-CGCGTAGAAAGTCAACGAA-GAT.............2511.0010010
......................CATTCGACATCGTTTAG-TTTTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
............................ACATCGTTTAG-TTTTGCTG--TA-AAATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTCAACGAA-GATGTCGCGTTT....2511.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGG---C-CGCGTAGAAAGTCAACGAA-G...............2611.0010100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-----GACAAACGG---C-CGCGTAGAA...........................2211.0010100
...................GTGCATTCGACATCGTTTAG-T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.........................TCGACATCGTTTAG-TTTTGCTG--T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCA-----GACAAACGG---C-CGCGTAGA............................2211.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAAGTCAACGAA-GATGT...........2111.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAAAGTCAACGAA-GATGTCGCGTTT....2711.0010010
dm3
TCTTTT----TGATGTCTTGTGCATTCGACATCGTTTAG-TTTTGCTG--TA-AAATAGTAAGT-----------TTATTGTG-AAATATC--A-------------------------------AACGCCAGGT-GGTAGTAAACACTTA-------------AAAA--GCAAGG-CAGTGAAC---CGATTTCT------------GCCAG-GGC----------------TTCGAATGAAAC-AACC--AA--ATGTCATGCG--------------------------GAAATAT-TTGGCA-TAC-GT-TTTTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACAA--AG-CAAAA------TCTTATGTGGC--CC---------GA--------A-------ACTAAT----------------------------------A----AAT-------TGTG-ATTC--------CAGG-CGCA-----GACAAACGG---C-CGCGTAGAAAGTCAACAAA-GATGTCGCGTTTCTTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGG---C-CGCGTAGAAAGTC.......................20116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000062003000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGG---C-CGCGTAGAAAGTCAAC....................23113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000010000041501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATTCGACATCGTTTAG-TTTTGCTG--T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021601000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----GACAAACGG---C-CGCGTAGAAAGTC.......................24110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-----GACAAACGG---C-CGCGTAGAA...........................2217.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGG---C-CGCGTAGAAAGTCAAC....................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000100000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGG---C-CGCGTAGAAAGTCAACAAA-GA..............2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GATGTCTTGTGCATTCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
..........................CGACATCGTTTAG-TTTTGCTG--T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATTCGACATCGTTTAG-TTTTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGG-CGCA-----GACAAACGG---C-CGCGT...............................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGG---C-CGCGTAGAAAGTCAACA...................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000002000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-----GACAAACGG---C-CGCGTAGAAA..........................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CATCGTTTAG-TTTTGCTG--TA-AAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG---C-CGCGTAGAAAGTCAAC....................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAAGTCAACAAA-GATGTCGC........2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-----GACAAACGG---C-CGCGTA..............................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGG---C-CGCGTAGAAAGTCAACAAA-GAT.............2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CTTGTGCATTCGACATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-CGCA-----GACAAACGG---C-CGCGTAGAA...........................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGG---C-CGCGTAGAAAGTCAACAAA-................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCAACAAA-GATGTCGC........1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----GACAAACGG---C-CGCGTAGA............................1912.0020000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAAT----------------------------------A----AAT-------TGTG-ATTC--------CA..............................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGG---C-CGCGTAGAAAGT........................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGG---C-CGCGTAGAAAGTCAA.....................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000
..............GTCTTGTGCATTCGACATCGTTTAG-T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGG---C-CGCGTAGAAA..........................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.................TTGTGCATTCGACATCGTTTAG-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000000000000
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..............................................................................................................................................................................................................................................ATGAAAC-AACC--AA--ATGTCATGCG--------------------------GA......................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGTCAACAAA-GATGTCGCGTT.....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CATCGTTTAG-TTTTGCTG--TA-AA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................TCT------------GCCAG-GGC----------------TTCGAATGAAAC-AACC--AA--A...........................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GCATTCGACATCGTTTAG-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGTCAACAAA-GATGTCG.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
......................CATTCGACATCGTTTAG-TTTTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGG---C-CGCGTAGAAAGTCAACA...................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................TTTCT------------GCCAG-GGC----------------TTCGAATGAAAC-AAC...................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACGG---C-CGCGTAGAAAGTCAAC....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TCTTTT----TGATGTCTTGTGCATTCGACATCGTTTAG-TTTTGCTG--TA-AAATAGTAAGT-----------TTATTGTG-AAATATT--A-------------------------------AGAGCCAGGT-GGTGATAAACACTCA-------------AAAG--GCAAGA-CAGTGAAC---CGATTTCT------------GGCAA-GGC----------------TTCGAATGAAGC-AACC--AT--AAGTCCAGCG--------------------------AAAACAT-TTGGCA-TGC-AT-TTCTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACAA-TAG-CAAAA------ACTTATGTGGC--CA---------GA--------A-------ACTAAT----------------------------------A----AAT-------TGTG-ATTC--------CAGG-CGCA-----GACAAACGG---C-CGCGTAGAAAGTCAACGAA-GATGTCGCGTTTCTTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGTCAACGAA-GATGTCGC........2212.0020000200
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-----GACAAACGG---C-CGCGTAGAAAGT........................2512.0020001100
.................................GTTTAG-TTTTGCTG--TA-AAATAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
...TTT----TGATGTCTTGTGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGG---C-CGCGTAGAAAGG........................2011.0010001000
......................CATTCGACATCGTTTAG-TTTTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGG---C-CGCGTAGAAAGTCAACG...................2311.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGG---C-CGCGTAGAAAGT........................1911.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTCAACGAA-GATGTCGCGTTT....2511.0011000000
............................................................................TATTGTG-AAATATT--A-------------------------------AGAGCCAGGT-GGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAAGTCAACGAA-GA..............1811.0010000010
...................................TTAG-TTTTGCTG--TA-AAATAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGG---C-CGCGTAGAAAGT........................1811.0010001000
...................................TTAG-TTTTGCTG--TA-AAATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCA-----GACAAACGG---C-CGCGTAGAA...........................2311.0010100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-----GACAAACGG---C-CGCGTAGAAA..........................2311.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGG---C-CGCGTAGAAAG.........................1811.0010000100
.......................ATTCGACATCGTTTAG-TTTTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
................CTTGTGCATTCGACATCGTTTAG-T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAAGTCAACGAA-GATGTCGC........2411.0010100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAACGAA-GATGTCGCGTTT....2111.0010000100
droYak3
TCTTTT----TGATGTCTTGTGCATTCGACATCGTTTAG-TTTTGCTG--TA-AAATAGTAAGT-----------TTATTGTG-AAATATT--A-------------------------------AGCGCCAGGT-GGTGATAAACACTTA-------------AAAG--GCAAGA-CAGTGAAC---CGATTTCT------------GGCAA-GGC----------------TTCGAATGAAGC-AACT--AT--AAGTCCAGCG--------------------------GAAACAT-TTGGCA-TGC-AT-TTTCGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACAA-AAG-CAAAA------ACTTATGTGGC--CA---------GA--------A-------ACTAAT----------------------------------A----AAT-------TGTG-ATTC--------CAGG-CGCA-----GACAAACGA---C-CGCGTAGAAAGTCAACGAA-GATGTCGCGTTTCTTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................TTCGACATCGTTTAG-TTTTGCTG--TA-AAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2815.00500000000005
..............GTCTTGTGCATTCGACATCGTTTAG-T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.00303000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-----GACAAACGA---C-CGCGTA..............................1912.00200100010000
..........................CGACATCGTTTAG-TTTTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00210100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCA-----GACAAACGA---C-CGCGT...............................1911.00101000000000
....................TGCATTCGACATCGTTTAG-T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACGA---C-CGCGTAGAAAGT........................2111.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCAACGAA-GATGTCGCGT......2111.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAAGTCAACGAA-GATGTCGCGT......2611.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCA-----GACAAACGA---C-CGCGTAG.............................2111.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTCAACGAA-GATGTCGCGTTTCT..2611.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGA---C-CGCGTAGAAAGT........................1911.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGA---C-CGCGTAGAAAGTCA......................2011.00100000010000
.....................................................................................................................................................................................GAAC---CGATTTCT------------GGCAA-GGC----------------T..................................................................................................................................................................................................................................................................................................................................2111.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAAGTCAACGAA-GATGT...........2111.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----GACAAACGA---C-CGCGTAGAAAGT........................2311.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTCAACGAA-GATGTCGC........2111.00100000010000
................CTTGTGCATTCGACATCGTTTAG-TTTTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---C-CGCGTAGAAAGTCAAC....................1911.00101000000000
...........................GACATCGTTTAG-TTTTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
.....................GCATTCGACATCGTTTAG-T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAAGTCAACGAA-GATGTCGCGTTT....2811.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAACGAA-GATGTCGCGTTT....2211.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-CGCA-----GACAAACGA---C-CGCGT...............................2011.00101000000000
................CTTGTGCATTCGACATCGTTTAG-T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
................CTTGTGCATTCGACATCGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-----GACAAACGA---C-CGCGTAGAAAGT........................2511.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACGA---C-CGCGTAGAAAGTC.......................2211.00110000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTCAACGAA-GATGTCGCGTTT....2511.00100000010000
...............TCTTGTGCATTCGACATCGTTTAG-T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
...................................TTAG-TTTTGCTG--TA-AAATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGTCAACGAA-GATGT...........1911.00100001000000
................................................................................................................................................ACACTTA-------------AAAG--GCAAGA-CAGTGAAC---................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
..............GTCTTGTGCATTCGACATCGTTTAG-TT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTCAACGAA-GATGTCGC........2011.00100000010000
droEug1
TCTTTT----TGATGTCTTGTGCATTCGACATCGTTTAG-TTTTGCTG--TAAAAATAGTAAGT-----------TTATTGTG-AAATACT--A-------------------------------AGCGCTAAGT-GGTGGTAAACAATAA-------------AAAG--ACAAGA-CAACGAAG---CGATTTCT------------ATAAA-CGC----------------TTTGAATTAAAC-GATC--AA--AAATCATGCG--------------------------AAAAACA-CTGCCA-GAA-TT-TTTTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACAA-AAG-CAAAA------ACTTATGTGGC--CC---------GA--------A-------ACTAAT----------------------------------A----AAT-------TGTG-ATTC--------CAGG-CGCA-----GACAAACGG---C-CGCGTAGAAAGTCAACGAA-GATGTCGCGTTTCTTTSizeHit CountTotal NormTotal
No Reads
droBia1
TCTTTT----TGATGTCTTGTGCATTCGACATCGTTTAG-TTTTGCTG--TAAAAATAGTAAGT-----------TTATTGTG-AAATATT--G-------------------------------AGCGCCCGGT-GGTGGTAAACACACA-------------AAAT--AAAAGG-CAGTGAAC---TGCTCTAT------------CAAAG-GCC----------------TTTGAACAAAGC-AAAC--CA--AAAGCATGAT--------------------------GATATCT-TTGGGC-GAA-AT-TTTTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACCA-AAG-CAAAA------ACTTATGTGGC--CC---------GA-ATAA---A-------ACGAAT----------------------------------T----AATTGTGATTTGTA-ATTC--------CAGG-CGCA-----GACAAACGG---C-CGCGTAGAAAGTCAACGAA-CATGTCGCGTTTCTTTSizeHit CountTotal NormTotal
No Reads
droTak1
TCTTTT----TGATGTCTTGTGCATTCGACATCGTTTAG-TTTTGCTG--TAAAAATAGTAAGT-----------TTATTGTG-AAATATT--G-------------------------------AGCGCCCGGC-GGTGGTAAACACACA-------------AAAG--AAAAGC-CAGTGAAT---CAATTTCT------------CGAGA-GCC----------------ATCAAGCGAAAC-CAGC--CA--TAAACAGGCG--------------------------GAAACGT-TTGGCA-GAA-AT-TTTTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACCA-AAG-CAAAA------ACTTTTGTGGC--CC---------GA-ATAA---A-------TTTAAT----------------------------------A----AATGTGAATCTTCA-ATTC--------CAGG-CGCA-----GACAAACGG---C-CGCGTAGAAAGTCAACGAA-GATGTCGCGTTTCTTTSizeHit CountTotal NormTotal
No Reads
droEle1
TCTTTT----TGATGTCTTGTGCATTCGACATCGTTTAG-TTTTGCTG--TAAAAATAGTAAGT-----------TTATTGTG-AAATATC--C-------------------------------AGCACAAAGT-TGTGATAAACACTAA-------------GAAG--AGAAGG-CGGTGTAC---CGATTTCT------------ATAAA-GGT----------------TATAAATGAGAC-GACC--GA--TAATCCGGCG--------------------------AAAACCT-TTGGCA-GAA-AT-TTTTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACAA-AAG-CAGCA------ACTTATGTGGC--CC-------C-AA--------A-------ACTAAT----------------------------------A----CAT-------TTTAAATTG--------CAGG-CACA-----GACAAACGG---C-CGCGTAGTAAGTCAACGAA-CATGTCGCGTTTCTTTSizeHit CountTotal NormTotal
No Reads
droRho1
TCTTTT----TGATGTCTTGTGCATTCGACATCGTTTAG-TTTTGCTG--TAAAAATAGTAAGT-----------TTATTGTG-AAATATT--G-------------------------------AGCACAACGT-GGCGGTAAACAGTCA-------------AAGA--AGAAGG-CGGTGAAC---CTATTTCT------------ATAAA-GGC----------------TCTGCATGGAAC-GACC--AT--TATGCTGCCG--------------------------GAAACCT-TTGGCA-GAA-AT-TTTTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACAA-AAG-CAGCA------ACTTATGTGGC--CC---------GA--------A-------ACTAAT----------------------------------A----AAT-------TGTAAATTC--------CAGG-CGCA-----GACAAACGG---C-CGTCTAGAAAGTCAACGAA-CATGTCGCGTTTCTTTSizeHit CountTotal NormTotal
No Reads
droFic1
TCTTTT----TGATGTCTTGTGCATTCGACATCGTTTAG-TTTTGCTG--TAAAAATAGTAAGT-----------TTATTGTG-AAATACT--G-------------------------------AGAGCCGAGT-GGTAG-AAGCACTAA-------------AATG--ACAAGG-CGGAAAAC---CGATTTTC------------CTAAA-GGC----------------CTTCCATTAAAC-AATC--TG--CAATCATGCA--------------------------GAAACCT-TTGGCA-GAA-TTTTTTTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACCG-AAG-CAAAA------ACTTATGTGGC--CC---------CA--------A-------ACTAATAAACT-----------------------------A----AAT-------TGTG-ATTC--------CAGG-CGCA-----GACAAACGC---C-CTCGTAGAAAGTTAACGAA-GATGTCGCGTTTCTTTSizeHit CountTotal NormTotal
No Reads
droKik1
TCTTTT----TGATGTCTTGTGCATTCGACAGCGTTTAG-TTTTGCTG--TAAAAATAGTAAGT-----------TT-TCGTG-AAAATCC--A-------------------------------AGCCCCACCCAGGTG-AAAACG-TGC-------------CCAG--CCGAGACCGGCGAGC---GGATTTTC------------CGAAA-GGT----------------CATGG---------------------------G----------------GGAACCGGCGAGAAAC--TTGCGAATTC-AT-TTTCGCA-AACGCCATGTTGGCCGAGCGGCCAAACATAACCTCAACCA-GGGGCGAGA------AATTATGTGGC--CC---------GA--------A-------ACTAAT----------------------------------A----GAT------TTGT--ATTC--------CAGG-TGCA-----GACAAACGG---C-CGCGTGGAAAGTCAACGAA-CATGTCGCGCTTCTTTSizeHit CountTotal NormTotal
No Reads
droAna3
TCTTTT----TGA-----------TTCGACATCGTT---------------AAAAAAAGTAAGTAAAAATGACAGTTATTGTG-AAATATT--G-------------------------------TGCCCTGCGA-ATAGGGAAATAGTTA-------------AAAG--CATCGA-CCCAGGGC---GTGTTTGA------------CTAAA-GGT----------------TTTGT-T-AAAA-ATCC--AA--TGATTGAGTG-CA-----------------------AAAAACA-ATGCGAAAA--CA-TTTTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACCG-CCG-GAGA-------AATTATGTGGC--CA---------GA--------A-------AT-ATTTAAT------------------------------T---AC-----AATTTGTT-ATTC--------CAGG-TGCA-----GACTAACAG---C-CGTGTAGATAGTCCACGAA-CATGTCGCGTTTCTTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----GACTAACAG---C-CGTGTAGAT...........................2012.002000011
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAACAG---C-CGTGTAGATAGT........................2212.002011000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG---C-CGTGTAGATAGTCCACGAA-................2511.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCACGAA-CATGTCGCGTTTCT..2311.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAG---C-CGTGTAGATAGTCCAC....................2311.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAGATAGTCCACGAA-CATGTCGC........2611.001010000
....................................................................................................................................................................................................................................................................................................................................CGCCATGTTGGCCGC----TCAAAC...............................................................................................................................................................................................................2111.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG---C-CGTGTAGATAGTCCACGA..................2411.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-----GACTAACAG---C-CGTGTAGATA..........................2311.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---C-CGTGTAGATAGTCCACGAA-CAT.............2411.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACAG---C-CGTGTAGATAGT........................2011.001010000
.....T----TGA-----------TTCGACATCGTT---------------AAAAAAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCCACGAA-CATGT...........1811.001000001
..........TGA-----------TTCGACATCGTT---------------AAAAAAAGTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TGCA-----GACTAACAG---C-CGTGTAGATAGTCC......................2911.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---C-CGTGTAGATAGTCCACGAA-CATG............2711.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACAG---C-CGTGTAGATAGTCC......................2211.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TGCA-----GACTAACAG---C-CGTGTAGAT...........................2411.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAACAG---C-CGTGTAGATA..........................2011.001001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATAGTCCACGAA-CATGTCGCGT......2611.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATAGTCCACGAA-CATGT...........2111.001001000
....TT----TGA-----------TTCGACATCGTT---------------AAAAAAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATAGTCCACGAA-CATGTCG.........2311.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCCACGAA-CATGTCGCGTTT....2511.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG---C-CGTGTAGATAGTCCC.....................2111.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATAGTCCACGAA-CATGTCGC........2411.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-----GACTAACAG---C-CGTGTAGAT...........................2111.001000010
.................................................................................................................................................................................................................................................AAAA-ATCC--AA--TGATTGAGTG-C................................................................................................................................................................................................................................................................................................2111.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCACGAA-CATGTCGCGTTT....2111.001000010
droBip1
TCTTTT----TGA-----------TTCGACATCGTT---------------AAAAAAAGTAAGTAAAAAAGACAGTTATTGTG-AAATATT--G-------------------------------TGCCCTGGAA-ATAGGTAAACAGTTG-------------AAAGTATCCACC-CAG--GGT---GTG--TTT------------GACTAAGG-----------------TTTGGTTAAAAA-AATC--AA--TGATTGAGCG-TA-----------------------AAAAACA-ATGCAAAAA--CA-TTTTGCAAAACGCCATGTTGGCCGC----TCAAACATAACCTCAACCG-CCG-GAGA-------AATTATGTGGC--CT---------GA--------A-------AT-ATTTAAT------------------------------T---AG-----AATTTGTT-ATTC--------CAGG-TGCA-----GACAAACAG---C-CGTGTAGATAGTCCACGAA-CATGTCGCGTTTCTTTSizeHit CountTotal NormTotal
No Reads
dp5
TCTTTT----AGATGTCTTGTGCATTCGACATCGTTT---TTTTGCTG--TAAAAATAGTAAGT-----------TTATT-TG-ATTTAAC--GTGTG------------TTCTGAC--------AATGCCAAGT-GGTTGC-----------GCGACGAGCGAAAAGCGTGCCGG-CAGTGAAT---TAAATTGTAGTTTTACACAG------------------------------------GG--TT--GTACGTCTCATTGG--------------------------CAAATTT-GTGGCA-TGCATT-TTTTGCAAAACGCCATGTTGGCCGC----TTATACATAACCTCAACAC--CG-TTCCA------AATTATGTGGC--TG-------TGGA--------T-------ATTAAA----------------------------------A----CAT-------TGTC-ATTC--------CAGG-TGCAGTGTAGACAAACGC---T-TGCGTAGAAACTAAAC-AA-CATGTCACGTTTCTTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTAAAC-AA-CATGTCACGT......2211.0010000100000
....................................................................................................................................................................................................................................................................CATTGG--------------------------CAAATTT-GTGGCA-TGC......................................................................................................................................................................................................................................................2211.0010010000000
...TTT----AGATGTCTTGTGCATTCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
...................................................................................................................AC--------AATGCCAAGT-GGTTGC-----------G..................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTAAAC-AA-CATGTCAC........2011.0010000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGTAGACAAACGC---T-TGCGTAGA............................2611.0010000100000
..............................ATCGTTT---TTTTGCTG--TAAAAATAGTGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAACTAAAC-AA-CATGTCACGT......2511.0010010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAACTAAAC-AA-CATGTCACGTTT....2511.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TGCGTAGAAACTAAAC-AA-CA..............2111.0010100000000
.......................ATTCGACATCGTTT---TTTTGCTG--T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100000
....................................T---TTTTGCTG--TAAAAATAGTGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22100.1010010000000
droPer2
TCTTTT----AGATGTCTTGTGCATTCGACATCGTTT---TTTTGCTG--TAAAAATAGTAAGT-----------TTATT-TG-ATTTAAC--GTGTG------------TTCTGAC--------AATGCCAAGT-GGTTGC-----------GCGACGAGCGAAAAGCGTGCCGG-CAGTGAAT---TAAATTGTAGTTTTACACAG------------------------------------GG--TT--GTACGTCTCATTGG--------------------------CAAATTT-GTGGCA-TGCATT-TTTTGCAAAACGCCATGTTGGCCGC----TTATACATAACCTCAACAC--CG-TTCCA------AATTATGTGGC--TG-------TGGA--------T-------ATTAAA----------------------------------A----CAT-------TGTC-ATTC--------CAGG-TGCAGTGTAGACAAACGG---CTTGCGTAGAAACTAAAC-AA-CATGTCACGTTTCTTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAACTAAAC-AA-CATGTCACGT......2518.008800000
.......................ATTCGACATCGTTT---TTTTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2115.005401000
...........................................................................TTATT-TG-ATTTAAC--GTGTG------------TTCTGAC--------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................2713.003300000
.......................ATTCGACATCGTTT---TTTTGCTG--G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002200000
..........................CGACATCGTTT---TTTTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTAGAAACTAAAC-AA-CATGTCACGT......2812.002200000
.......................ATTCGACATCGTTT---TTTTGCTG--TAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAACTAAAC-AA-CATGTCACGG......2512.002200000
........................TTCGACATCGTTT---TTTTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..............GTCTTGTGCATTCGACATCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
..........................................................................................................................................................................................................ACACAG------------------------------------GG--TT--GTACGTCTCATTGG--------------------------CA......................................................................................................................................................................................................................................................................2611.001100000
.......................ATTCGACATCGTTT---TTTTGCTG--T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------TGTC-ATTC--------CAGG-TGCAGTGTAG.................................................2311.001000010
........................TTCGACATCGTTT---TTTTGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTAGACAAACGG---CTTGCGT...............................2211.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAACTAAAC-AA-CATGTCACGC......2511.001100000
...................GTGCATTCGACATCGTTT---TTTTGCTG--T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAACTAAAC-AA-CATGTCACG.......2411.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCGTAGAAACTAAAC-AA-C...............2111.001100000
.............................................................................................................................................................................................................................................................................................................................................................................G-TTCCA------AATTATGTGGC--TG-------TGGA--------T-------........................................................................................................................................2411.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAACTAAAC-AA-CATGTCACGTTT....2711.001100000
..............GTCTTGTGCATTCGACATCGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
.............................CATCGTTT---TTTTGCTG--TAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.......................ATTCGACATCGTTT---TTTTGCTG--C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAGAAACTAAAC-AA-CATGTCAC........2411.001100000
......................CATTCGACATCGTTT---TTTTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTAAAC-AA-CATGTCACGT......2211.001001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAACGG---CTTGCGTAG.............................1911.001001000
droWil2
TCTTTTCAGATGTTGCCTTGCATATAAAACATCGTTCCTTTTTTGCAGTTTAATAATAGTAAGTA----------TTATT-TGCAAACATT--T---GAAAGTGAAAC-----------------------------------AACACTAG-------------TAAA--GTAACA-C------ATGC--------------------------GGC----------------T-TGGAAGCTAA-ATTC--AA--TGTATTAACGC-AGTAGCGATTTAAGGAAATTGAG-TTAAAGT-TTGTG---AA-AT-TTTT------CGCCATGTTGGCCGC--TTTCAAACATAACCTCAAACGAAAT-CAAAAAAAAAAAATTGAATA----CC---------CA--------A-------ACGAAT--------GTGAACATGTCATCATATATATA---ATAC-TGT-------TACA-ATTT--------CAGTTTGCA-----AACAAACCGGAAA-CTCTAACAACAATAACAAACAATGTCTCGTTTCTTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGGAAA-CTCTAACAACAAT.......................2212.00220000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGGAAA-CTCTAACAACAATAAC....................2512.00220000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGAAA-CTCTAACAACAATAACAA..................2612.00220000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGAAA-CTCTAACAACAATAACAAAC................2812.00220000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGAAA-CTCTAACAACA.........................1812.00220000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGGAAA-CTCTAACAACAATAACA...................2612.00220000
..................TGCATATAAAACATCGTTCCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200020
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACCGGAAA-CTCTAACAACAATAACA...................2912.00220000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAACAATAACAAACAATGTCTCGTT.....2811.00101000
.........ATGTTGCCTTGCATATAAAACATCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGAAA-CTCTAACAACAAT.......................2111.00110000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAACCGGAAA-CTCTAACA............................2111.00110000
.......................ATAAAACATCGTTCCTTTTTTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
..........................AAACATCGTTCCTTTTTTGCAGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
..........TGTTGCCTTGCATATAAAACATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-----AACAAACCGGAAA-CTCTAACAACA.........................2711.00110000
.........................................................................................................................................................................................................................................................................GC-AGTAGCGATTTAAGGAA...............................................................................................................................................................................................................................................................................1911.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----AACAAACCGGAAA-CTCTAACAAC..........................2411.00100010
.......................ATAAAACATCGTTCCTTTTTTGCAGTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010
...........GTTGCCTTGCATATAAAACATCGTTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
...........GTTGCCTTGCATATAAAACATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAATAACAAACAATGTCTC........2411.00100010
.............................CATCGTTCCTTTTTTGCAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-CTCTAACAACAATAACAAACAATGT...........2711.00100010
..........................AAACATCGTTCCTTTTTTGCAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGGAAA-CTCTAACAACA.........................2011.00110000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAACCGGAAA-CTCTAAC.............................2011.00100100
............................ACATCGTTCCTTTTTTGCAGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
......................TATAAAACATCGTTCCTTTTTTGCAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
droVir3
TCTT------TGATGTCTTGCGAAT--GACATCGTT------TTGCTG--TAATAATTGTAAGT------------TATTTTG-AAATACC--GTGAC----CGGAGCGGCT--------CTAAC----CAA---------------GTTGAGGACG-------A-------AAGC-CCAACAAGCGC--------------------------GGCATGTATTGCAACTCGCGCTG-ACAAAGA-TAACTTCG--TAATTGTG-G-CA-----------------------GAAAGTAGTTGTCA-----AT-ATTTGGCAAACGCCATGTTGGCCGC----CTGCACATAACCTCAACCG-C-----------------TCTGTGACACACAAGTCAA--GCAGCTAA-AATTGT------ATGT---------------------------------AATTT-----GTGTT--TT-ATTT--------ATTT-TGCA-----GA-AAACGG---CATAAGCAGAA--CTAAGTAC-CATGTCACGTTTCTTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGG---CATAAGCAGAA--CTA......................2012.002001000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGG---CATAAGCAGAA--CT.......................1912.002010000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGTAC-CATGTCACGTTTC...2112.002000000000000010000000000000000000000010000000000000000000000000
.......................AT--GACATCGTT------TTGCTG--T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000100000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGG---CATAAGCAGAA--CTAA.....................2111.001000000000000000001000000000000000000000000000000000000000000000
..............GTCTTGCGAAT--GACATCGTT------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGG---CATAAGCAGAA--CTAAGTAC-CATGTC..........2911.001000000000000000000000000000000000000000000000000000001000000000
.................TTGCGAAT--GACATCGTT------T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................ACC--GTGAC----CGGAGCGGCT--------CTAAC----...........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000000000000000000000000000000000000000000000000000000000000
TCTT------TGATGTCTTGCGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000100000000000000000000000000000000000000
..............GTCTTGCGAAT--GACATCGTT------TTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000010000000000000000000000000000000000
...........................GACATCGTT------TTGCTG--TAATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCAGAA--CTAAGTAC-CAT.............2111.001001000000000000000000000000000000000000000000000000000000000000
...........................GACATCGTT------TTGCTG--TAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCAGAA--CTAAGTAC-CATGTCACGT......2711.001000010000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGG---CATAAGCAGAA--CT.......................1811.001010000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA--CTAAGTAC-CATGTCACGTTTCT..2511.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................G-AAATACC--GTGAC----CGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000100
................CTTGCGAAT--GACATCGTT------TTGCTG--T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000010000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAA--CTAAGTAC-CATGTCA.........2011.001001000000000000000000000000000000000000000000000000000000000000
.....................GAAT--GACATCGTT------TTGCTG--C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................GA-TAACTTCG--TAATTGTG-G-CA-----------------------GAAAGT..................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000001000
TCTT------TGATGTCTTGCGAAT--GAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000001
..................TGCGAAT--GACATCGTT------TTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGG---CATAAGCAGAA--CTAAG....................1911.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
TTTCTT----TGATGTCTTGCGAA--CGACATCGTT------TTGCTG--TAATAAATGTAAGT-----------TT-TTATG-AAATACAACGTATA------------TTGTTGC-A-TTAAG----CAA---------------GTTGAGGATT----------A--TCAAGC-CGATGGAT---T-------------------GTAAA--GT----ATTGCAATTCGCGTTC-ATTAAAT-TATATTTG--TAATTGTGTG-CA-----------------------AAAAGTGACTGTCA-----AT-GTTTGGCAAACGCCATGTTGGCCGC----TCAAACCTAACCTCAACCG-CTC-----------------TATGACACCTAAGTCAATGGCAGTTAAAAATTGTACTAATATT----------------------------------A----ATT-------TGTG-TTTTTTGTTTGTTTGT-TGCA-----GA-ACACGG---CATAAGCAGA--ATTAAACAA-CATGTCACGTTTCTTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................TATT----------------------------------A----ATT-------TGTG-TTTTTTGTTTG.................................................................2311.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA--ATTAAACAA-CATGTCACGTTTC...2411.001100000
..................................................................................................................TGC-A-TTAAG----CAA---------------GTTGAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
TTTCTT----TGATGTCTTGTGAAT--GACATCGTT-------TGCTG--TAATAATTGTAAGT-----------TT-TATTA-AAATACC--GTGAC------------TAGTGCGTATCTAAA----CAAGTT-GGCGCTACAAGTGCA-------------ACAT--GCAATG-C-GTGCAT---AG-----------------------------------CAAC---------AAGAAGA-AATC--AT--TGTTTTTGCGCCA-----------------------AATGCTGGCTGTCAATG--TT-TTTTGGCAAACGCCATGTTGGCCGC----TTGCACATAACCTCAACAC--CG-AACGA----ACAGT----TGACACCC---------CA-GTTA---------------AA-AATTAATGTGCATTTATCAT---ATGTATATATATATT-----GGCTT--TT-ATT---------TTGT-TGCA-----G-CAAACGG---CATAAGCAGA-AGTAAAC-AC-CATGTCGCGTTTCTTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA-AGTAAAC-AC-CATGTCGCGTT.....2311.00101
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CATAAGCAGA-AGTAAAC-A..................1911.00110
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGG---CATAAGCAGA-AGTAAAC-...................2411.00110
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-AC-CATGTCGCGTTTCTTT2011.00110

Generated: 05/18/2015 at 07:51 PM