ID:

dsi_5416

Coordinate:

3r:10716575-10716724 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-17.3	-17.3	-17.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTTAACTTTTGGTGTTGGTTTAATGTTTGCCTTGCTGTTTGTATGTCTACTTTCCTAAAAGCTATGTTTTAGTAACTCTAGCACTGGTGTTTGGTTAATGCACGTTTTTGATTTGGTATGTTACACAACTGAACTTTAAATGCTTTGTTCGCTGAACTTCATTTCATCATATTAATCCCTATACTTGATTGTCCTTGCAGCTTAAAATCCTCTGGTGGAAGCAAACCCATCACAACGCGAACCAATCAAA ************************************************...((.....((((.(((.....)))..))))...))(((..((.((((.((.((.......((((((((.........(((((............))))).((((......)))).)))))))).......)).)))))).))..))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	M024 male body	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M053 female body
..................................................................................................................................................................TTCATCATATTAATCCCTATATTTGA..............................................................	26	1	1	1.00	1	1	0	0	0	0
.............................................................................................................................................................................AATCCCTATACTTGATTGTCCTTGC....................................................	25	0	1	1.00	1	0	1	0	0	0
....................................................................................................................................ACTTTTAATGCGTTGGTCGC..................................................................................................	20	3	5	0.20	1	0	0	0	1	0
..................................................................................ACAGGTGTTTGGTTAGTG......................................................................................................................................................	18	2	5	0.20	1	0	0	1	0	0
...........................................................................................TTGTCAATGCACGTTTTT.............................................................................................................................................	18	2	19	0.05	1	0	0	0	0	1
................................................................................................................................................................................................................................ACCTGTCACAACGCGA..........	16	2	20	0.05	1	1	0	0	0	0
................................................................................................................................................................................................................................AACCATCACAAGGCGACCC.......	19	3	20	0.05	1	0	0	1	0	0

Anti-sense strand reads

AAATTGAAAACCACAACCAAATTACAAACGGAACGACAAACATACAGATGAAAGGATTTTCGATACAAAATCATTGAGATCGTGACCACAAACCAATTACGTGCAAAAACTAAACCATACAATGTGTTGACTTGAAATTTACGAAACAAGCGACTTGAAGTAAAGTAGTATAATTAGGGATATGAACTAACAGGAACGTCGAATTTTAGGAGACCACCTTCGTTTGGGTAGTGTTGCGCTTGGTTAGTTT ************************************************...((.....((((.(((.....)))..))))...))(((..((.((((.((.((.......((((((((.........(((((............))))).((((......)))).)))))))).......)).)))))).))..))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR902008 ovaries	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	M024 male body
..................................................................................................................................................................................................................................GGTAGGGTTGCGCTT.........	15	1	6	0.17	1	1	0	0	0	0
...............ACCAAATGACAAACGGCATGA......................................................................................................................................................................................................................	21	3	6	0.17	1	0	1	0	0	0
..........................................................................................................................................................................................................ATGTTGGGAGACCACCGTC.............................	19	3	12	0.08	1	0	0	1	0	0
................................................................................................................................................................................................GCAACGTCGAATGTTAGGC.......................................	19	3	14	0.07	1	0	0	0	0	1
...............................................................................................................................................................................................................................TTGGGTCGTCTGGCGCTTG........	19	3	19	0.05	1	0	0	0	1	0
.........................................ATACAGAGGAATGGAT.................................................................................................................................................................................................	16	2	20	0.05	1	0	0	1	0	0
.........................................................................................................................................................................................................AATTTCAGGAGACCCGCTT..............................	19	3	20	0.05	1	0	0	0	1	0
......................................................................TCGTTGCGATCGGGACCA..................................................................................................................................................................	18	3	20	0.05	1	1	0	0	0	0

Generated: 04/24/2015 at 10:47 AM