ID:

dsi_5413

Coordinate:

3l:11747593-11747752 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-18.5	-18.1	-18.0	-17.8

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

AAATTAATGTTTTGCTTTAAAAGCTTAAAACATTATTCAACAGGTGTAAATGTGACAAATCCAATTAGTAAACAAGTAATTCTCTTTGCACAAAAACCCAGAAAACGAAACAAAAACCTACACAAACTCATTGGTCGTAAAGTGTGAAGAAATTAAAAATTATAAATTTAAATAAGTGTGGTTTTTCTCGTTTTGTAAAGCGCTCTTTAGATGTATTTCGAAAACGAATTTAACGAAAAGGTGTAAAGGAAAAATCCACA **********************************************************************..............(((............(((((((...(((((((.((((....................................................))))))))))).))))))).....)))********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	SRR553485 Chicharo_3 day-old ovaries	O001 Testis	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	M024 male body
........................................................................................................................................................................................TTCTCGTTTTGTAAAGCG..........................................................	18	0	1	1.00	1	0	0	1	0	0	0
.................TAAAAGCTTAAAACATTATTCAACAGG........................................................................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0
........................................................................CAAGTAATTCTCTTTGCACAAAAACCCA................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0
...............................ATTATTCAACAGGTGTAAATGTGACAA..........................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................TCATTGGGCGTAAAGGGT...................................................................................................................	18	2	4	0.25	1	0	0	0	1	0	0
.........................................................................................................................................TAGAGTCTGAAGAAATTAAAT......................................................................................................	21	3	8	0.13	1	0	1	0	0	0	0
..............................................................................................................................ATCATTGGGCGTAAAGGGT...................................................................................................................	19	3	20	0.10	2	0	0	0	2	0	0
.............................................................................................................................AATCACTGGTCGTAAAGCG....................................................................................................................	19	3	16	0.06	1	0	0	0	0	1	0
......................................................................................................................................................................................TTTTGTCGTTTTATAAAG............................................................	18	2	20	0.05	1	0	0	0	0	0	1

Anti-sense strand reads

TTTAATTACAAAACGAAATTTTCGAATTTTGTAATAAGTTGTCCACATTTACACTGTTTAGGTTAATCATTTGTTCATTAAGAGAAACGTGTTTTTGGGTCTTTTGCTTTGTTTTTGGATGTGTTTGAGTAACCAGCATTTCACACTTCTTTAATTTTTAATATTTAAATTTATTCACACCAAAAAGAGCAAAACATTTCGCGAGAAATCTACATAAAGCTTTTGCTTAAATTGCTTTTCCACATTTCCTTTTTAGGTGT ********************************************************..............(((............(((((((...(((((((.((((....................................................))))))))))).))))))).....)))**********************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total

Generated: 04/24/2015 at 10:37 AM