ID:

dsi_5377

 Coordinate:

2l:9177619-9177768 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.6 -21.3 -21.0 -21.0

Flybase annnotation

CDS [2l_9177769_9178162_-]; exon [2l_9177769_9178475_-]; intron [2l_9176675_9177768_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGCCAAGGTGCCGGTGGACCAGAAGGAGGCCCTGGCATCCGATCTCATGGGTTCGTTAATAATGCTCTTTTAAGTACCGTTGCCTTTTTGCGTGGTGGTGCGCCCCCTACGAAAAATTGTGCAAATTACCAGCTGTGCTTGTGTGTGTGCGTGCATGTATGTATGTATTTTCGTACTCGACTGTTATCTGCTTCCCCTCTCTCGCCCGCACCGCTCTCTTTCTCTTCTCTTCTTTGTCTGCTTTTTCACT
**************************************************************************************.......((....(((.....(((((((...((((((...(((..(((((((........))))).))..)))))))))...)))))))......)))......))********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 O001
Testis
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 M024
male body		 SRR553488
RT_0-2 hours eggs
............GGTGGACCAGAAGGAGGCCCTGGCATC................................................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CGTACTCGACTGTTATCTGCT.......................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TGTTTTCGTCCTCGACTGTTGT............................................................... 22 3 3 1.33 4 0 0 0 0 4 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CGTACTCGACTGTTGTCTGCT.......................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............GTGGACCAGAAGGAGGCCCTGT....................................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........CGGTGGACCAGAAGGAGGCCC.......................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......GGTGCCGGTGGACCAGAAGGAGGCA........................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............GGTGGACCAGAAGGAGGCCC.......................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........TGCCGGTGGACCAGAAGGAGG............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........CCGGTGGACCAGAAGGAGGC............................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...CAAGGTGCCGGTGGACCAGAA.................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................TCGGTTTTTATCTGCTTCCCCT.................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
TGCCAAGGTGCCGGTGGACCAGA................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................TTTGCGTGGTGGTGCGCCCCC............................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.GCCAAGGTGCCGGTGGACCAGAAGG................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................AGGCCCTGGCATCCG................................................................................................................................................................................................................. 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........CGGTGGACCAGAAGGAGGC............................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................TATTTTAAGTATCGTTGCATT.................................................................................................................................................................... 21 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................TTTTTTTATCTTCTTTGTCTG.......... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ACGGTTCCACGGCCACCTGGTCTTCCTCCGGGACCGTAGGCTAGAGTACCCAAGCAATTATTACGAGAAAATTCATGGCAACGGAAAAACGCACCACCACGCGGGGGATGCTTTTTAACACGTTTAATGGTCGACACGAACACACACACGCACGTACATACATACATAAAAGCATGAGCTGACAATAGACGAAGGGGAGAGAGCGGGCGTGGCGAGAGAAAGAGAAGAGAAGAAACAGACGAAAAAGTGA
**********************************************************.......((....(((.....(((((((...((((((...(((..(((((((........))))).))..)))))))))...)))))))......)))......))************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR902009
testis
 O001
Testis
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
......................................................................................................GGGTGATGGTGTTTAACACGT............................................................................................................................... 21 3 4 5.00 20 5 15 0 0 0 0 0 0 0 0
...........................CCGGGACCGTAGGCTAGAGTACC........................................................................................................................................................................................................ 23 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
............................CGGGACCGTAGGCTAGAGTAC......................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................GGGTGATGGTTTTTAATACGT............................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................AACGCGGGGGATGCTTTTTAAC................................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......CCACGGCCACCTGGTCTTCCT............................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.........................CTCCGGGACCGTAGGCTAGAGTACCCA...................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................CTCCGGGACCGTAGGCTAG.............................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................CCTCCGGGACCGTAGGCTAGAGT........................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................GGTGATGGTGTTTAACACGT............................................................................................................................... 20 3 15 0.40 6 2 4 0 0 0 0 0 0 0 0
.............................................................................................................................................ACACACTCGTACGTACATATATAC..................................................................................... 24 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................AGAAAGAGATGATAAGAATC.............. 20 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................TTGCGAGAGGAAGAGAAGA...................... 19 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................AGAGGTAGAGAACAGAAGAA................ 20 3 20 0.15 3 0 0 0 0 0 0 3 0 0 0
......................................................................................................GGGAGATGCTTTTAAACACTT............................................................................................................................... 21 3 8 0.13 1 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................GTAGCGAGAGGAAGAGAAG....................... 19 2 8 0.13 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................AACATGTTTAATGGTC...................................................................................................................... 16 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0
..................................................CAAGAAAGTATTACAAGAAAA................................................................................................................................................................................... 21 3 12 0.08 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................AGAAGGAAAAGACGAAATAGT.. 21 3 13 0.08 1 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................CGAGCTGACAATAAACGAAC........................................................ 20 3 17 0.06 1 0 0 0 0 0 0 1 0 0 0
..................................................CAAGAAAGTATTACAAGAAA.................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.......................GCCCCCGGGACCGTAG................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:9177569-9177818 - dsi_5377 TGCCAAGGTGCCGGTGGACCAGAAGGAGGCCCTGGCATCCGATCTCATGGGTTCGTT--------------------------------------------------------------------AA---------TAATGCT---C---TTTTAAGTACCGTTGCC-------TTTTTGCGTG--------------------GT-----------------------------------------------------------GGTGCG--C--CCCCTACGAAAA-------------ATTGTGCAAATTA----------CCAGCTGTGCT--TGT-------------------------GTGTGTGCGTGCAT--GTATGTA-----TGTAT-TTT--CGTACTCGAC-----------------TGTTATCTGCTT-CCC----------CTC--TCTCGCCCGC-ACCGC----------------------------------------------------------TCTCTTTCTCTTCT------------------------------------------CTTCTTTGT--------CT--GCTT--TTTCACT
droSec2 scaffold_3:4940954-4941200 - TGCCAAGGTGCCGGTGGACCAGAAGGAGGCCCTGGCATCCGATCTCATGGGTTCGTT--------------------------------------------------------------------AA---------TAATGCT---C---TTTTAAGTACCGTTGCC-------TTTTTGCGTG--------------------GT-----------------------------------------------------------GGTGAG--C--CCCCCACGAAAA-------------ATTGTGCAAATTA----------CCAGCTGTGCT--TGT-------------------------GTGTGTGCGTGTAT--GTATGTA-----TGTAT-TTT--CGTACTCGAC-----------------TGTTATCTGCTT-CCC----------CTC--TCTCGCCCGC-TCCGC----------------------------------------------------------TCTCTTTCTCT---------------------------------------------TTTCTTTGT--------CT--GCTT--TTTCACT
dm3 chr2L:9494022-9494271 - AGCCAAGGTGCCGGTGGACCAAAAGGAGGCCCTGGCATCCGATCTCATGGGTTCGTT--------------------------------------------------------------------AA---------TAATGCT---C---TTTTAAGTCCCGTTGCC-------TTTTTGCTTG--------------------GC-----------------------------------------------------------GGTGAG--C--CCCCCACGAAAA-------------ATTGTGCAAATTA----------CCAGCTGTGCT--TGT-------------------------GTGTGTGCGTGGTT--GTATGTA-----TGTAT-TTT--CGTACTCGAC-----------------TGTTATCTGCTT-CCC----------CTC--TCTCGCCCGC-ACCAC----------------------------------------------------------TCTCTTTCTCTTCT------------------------------------------CTTCTTTGT--------CT--GCCT--TTTCACT
droEre2 scaffold_4929:10097258-10097527 - AGCCAAGGTGCCGGTGGACCAGAAGGAGGCCCTGGCATCCGATCTCATGGGTTCGTT--------------------------------------------------------------------AA---------TAATGCT---C---TTTTAAGTCCCGTTGCC-------TTTTTGCCTGGGTAGGAGTCACGGTGGGGGGT-----------------------------------------------------------GGGGGG--A--CCCCCTCGAAAA-------------ATTGTGCAAATTA----------CCAGCTGTGCT--TGT-------------------------GTGTGCGCG--TGT--GTATGTA-----TGTAT-TTT--CGTACTCGAC-----------------TGTTATCTGCTT-CCC----------CTC--ACTCGCCCGC-ACCGC----------------------------------------------------------TCTCTTTCTCTTCT------------------------------------------CTTCTTTGT--------CTCCGCTT--TTTCACT
droYak3 2L:12162192-12162417 - TGCCAAGGTGCCGGTGGACCAGAAGGAGGCCCTGGCATCCGATCTCATGGGTTCGTT--------------------------------------------------------------------AA---------TAATGCT---C---TTTTAAGTCCCGTTGCC-------T-----------------------------------------------------------------------------------------------------------CGAAAA-------------TTTGTGCAAATTA----------CCAGCTGTGCT--TGT-------------------------GTGTG--CGTGTGT--GTATGTA-----TGTAT-TTT--CGTACTCGAC-----------------TGTTATCTGCTC-ACC----------CTC--TCTCGCCCGC-ACCGT----------------------------------------------------------TCTCTTTCTCTTCT------------------------------------------CTTCTTTGT--------CTCTGCCT--TTTCACT
droEug1 scf7180000406904:538983-539231 - AGCCAAAGTGCCGGTGGACCAGAAGGAGGCCCTGGCATCCGATCTCATGGGTTAGTT--------------------------------------------------------------------CA---------AAAT--T---G---TTTTAA-------TGTC-------TTTTTT-----------------------------------------TC-----------------------------------------------------CCCAG-TTAAAA-------------ATTGTGCAAATTA----------CCAGCTGTGCG--TGT-------------------------GTGT------GTAT--GTATGTA-----TGTAT-TTT--C--ACTCGAC-----------------TGTTATCTGCAC-CCC----------CTC--TCTC--------------------------CGTCTCCCTC---------------------------------TTCCTTTTCCTTGCCCTAGCACTCTTTTTCCCTTTTTCT----------------CTTTTCTTTGT--------CTCGGCTT--TTTCACT
droBia1 scf7180000302408:3687302-3687528 + AGCCAAGGTGCCGGTGGACCAGAAGGAGGCCCTGGCATCCGATCTCATGGGTGAGTCTTGCCATTACAATTTCACTGGAAAATTCCCCC-T-TTTTTGCC--------------------------A-----C----------------------------------TCTCTTTT-----------------------------------------------------------------------------------------------------------CCAAAA-------------ATCGTGCAAATTA----------CCAGCTGTGCG--TGT-------------------------GTGT----------GT--GT-------------G-TATG--TACTCGAC-----------------TGTTATCTGCGC-CCC----------C-CTTTGCCGCCC------------------------------------------------------------------TCTCCTTCTCTTCT------------------------------------------CTTCTTTGT--------CTCGGCTT--TTTCACT
droTak1 scf7180000415207:59527-59743 + AGCCAAGGTGCCGGTGGACCAGAAGGAGGCCCTCGCATCCGATCTCATGGGTACGTTTT--------------------------------------TAC-------------------------AA-----TATTTAAT--TCCTCCT---------------CCT-------TTTT--------------------------------------------------------------------------------------------------TTCTTTCG-AAA-------------ATTGTGCAAATTA----------CCAGCTGTGCG--TGT-------------------------GTGT--------------GTGTA-----TGTA---CT--CGTATTCGAC-----------------TGTTATCTGCAC-CCC----------CTC--TC---CCTGT-CTCAC----------------------------------------------------------TCTCTTTCTCCTTT------------------------------------------CTTCTTTGT--------CTCGGCTT--TTTCACT
droEle1 scf7180000491186:2471841-2472068 - TGCCAAGGTGCCGGTGGACCAGAAGGAAGCCCTGGCATCTGATCTCATGGGTTCGTTTC----------------------------CCTTTTTTTTTAC------------------TTTAGT-AATAGTGTGA---TT--T---C---TTT------------------TTTT---------------------------------------------TTA-----------------------------------------------------CCTTC-CCAAAA-------------GTTGTGCAAATTA----------CCAGCTGTGCA--TGT-------------------------GTGTGTGT----GTGT--AT-------------G-TATG--TACTCGAC-----------------TCTTATCTGCC--CCC----------CTC--TCTCG----------C----------------------------------------------------------TCTCTTTCTCTGTT------------------------------------------CTTCTTTGT--------CTCGGCTT--TTTCACT
droRho1 scf7180000776897:23271-23475 + AGCCAAGGTGCCGGTGGACCAGAAGGAGGCCCTTGCATCCGATCTCATGGGTTCGTCTT---------------------------------TTTTCTAC--------------------------ATACTATGATTAATTTT---C---TTTTTA------------------------------------------------------------------------------------------------------------------------CCCTC-CCAAAA-------------ATTGTGCAAATTA----------CCAGCTGTGCG--TGT-------------------------GTGT----------GT--GT-------------G-TATG--TACTCGAC-----------------TGTTATCTGCCC-CCC----------GTC--TC------------------------------------------------------------------------TCTCTTTCTCT---------------------------------------------GTTCTTTGT--------CTCGGCTT--TTTCACT
droFic1 scf7180000454076:172144-172374 + TGCCAAGGTGCCGGTCGACCAAAAGGAGGCCCTGGCATCCGATCTCATGGGTTAGTTA-----------------------------------------CATATGTATATTTTTATGTAC-----CA---------TAAT--T---GCTCTTTTTA------------------------------------------------------------------------------------------------------------------------CCCCCAC-AAAA-------------ATTGTGCAAATTA----------CCAGCTGTGCG--TGT-------------------------GTG----------------T-------------G-TATG--TACTCGAC-----------------TGTTATCTGCGACCCC----------CTC--TCTCACTGTCTTCCTC---------------------------------------------------TCTCTTTTCGTTTTCTCTGCC------------------------------------------CTTCTTTGT--------CTCGGCTT--TTTCACT
droKik1 scf7180000302472:1812410-1812655 - TGCCAAGGTGCCGGTGGACCAGAAGGAGGCCCTGGCATCCGATCTCATGGGTTAGTTGTGC----------C---------------CCTT-TTTT-------------------TGT---------------------------------------TC-----GCCTTTCTTTT---------------------------------------------TCA-----------------------------------------------------CCCTG-CC-GAA-------------ATTGTGCAAATTA----------CCAGCTGTGTG--CGT------GTG-----------------T----------GTGT--GT-------------G-TATG--TACTCGAC-----------------TCTTATCTGAGC-CCTCTGCCTCCCCCTC--TTTCGCTCT------------------------------------------------------------------CTCATTCTCGCTT-------------------CCTCTCTTTCGCTCTCTACAACCTTTCTTTGT--------CTCGGCTT--TCACACT
droAna3 scaffold_12943:861732-861965 - AGCCAAGGTGCCGGTGGACCAGAAGGAGGCCCTGGCATCCGATCTCATGGGTTAGTATT-CCATTA-------------------ACCC-T-TATTCCCC--------------------------A---------------------T---------------ACTTTTCTTAT------------------------------------------------C-----------CAATCTAG------------------------------------------CAA-------------TTTGTGCAAATTG----------CCAGCTGTGCG--CCA-------------------------GTGTGTG----------------------------TGTG--TACTCGACTCGACTCGACTCGACTCTCTTATCTGAGC-CGC----CT-CGCCTC--TCCGG----------C----------------------------------------------------------TCTCTCTATCTGCC-----------------------------------------CTTTCTTTGT--------CTCCACTT--TTACACT
droBip1 scf7180000396728:2267776-2268016 + TGCCAAGGTGCCGGTGGACCAGAAGGAGGCCCTGGCATCCGATCTCATGGGTTCGTAACTCCATTA-------------------ACCC-T-TATTCTGC-------------------------AG-----TTTTTATT--TCCTCCT---------------TCA-------TAT----------------------------------------------------CCC---CAATCTAG------------------------------------------CAA-------------TTTGTGCAAATTG----------CCAGCTGTGTGCCAGT------GTG-----------------T----------GTGT--GT-------------G-TGTG--TACTCGAC---------------TCTCTTATCTGAGC-CGC----CT-CGCCTC--TCCC----GG-----C--------------------------------------------------------TCTCTCTCTATCTGCC-----------------------------------------CTTTCTTTGT--------CTCCACTT--TTATACT
dp5 4_group1:808577-808824 + dps_1353 TGCCAAAGTGCCGGTGGATCAGAAGGAGGCTCTGGCATCCGATCTCATGGGTAAGTG-----------------CG-------------------------------------------------AA---------TCGTGAT-CCGCTCTTTT-------------------------------------------------------------------TC-----------------------------------------------------CCCGTTTGAAAAAATGTTCGTATGTATTGTGCAAAAAATTGTACGTCTCCAGCTGTCTGTCTGTATGAGTATG-----------------T----------GTGT--GT-------------G-TATG--TACTCGAC-----------------TCTTATCTGGGC-TCC---------A--CTTTT--GCCTT-----GTTCTTTGTCTCTCTCCCTCTCTCTC----------------------------------TC--------------------------------------------------------TCTTTCT--------CT-GGCTT--TCACACT
droPer2 scaffold_5:4402383-4402632 - TGCCAAAGTGCCGGTGGATCAGAAGGAGGCTCTGGCATCCGATCTCATGGGTAAGTG-----------------CG-------------------------------------------------AA---------TAGTGAT-CCGCTCTTTT-------------------------------------------------------------------TC-----------------------------------------------------CCCGTTTGAAAAAATGTTCGTATGTATTGTGCAAAAAATTGTACGTCTCCAGCTGTCTGTCTGTATGAGTATG-----------------T----------GTGT--GC-------------G-TATG--TACTCGAC-----------------TCTTATCTGGGC-TCC---------A--CTTTT--GCCTT-----GTTCTTTGTCTCTCTCCC------------------------------------------TCTCTCTCTC----------------------------------------------TCTCTTTCT--------CT-GGCTT--TCACACT
droWil2 scf2_1100000004585:6987162-6987420 - TGCCAAAGTGCCGGTTGATCAAAAGGAGGCTCTGGCATCTGATCTCATGGGTAAATCTA----TT------TC-CT---------------------------------------------------------------------------AAAAAAT--------------------TCCATA--------------------GT-----------------------------------------------------------GTTGAA--------------------------------------AAAAA----ACTTCTTTTTTTCTTTTGCTGCATTTGTATG-----------------T----------ATGT--AT--------------TTGGT--TACTTATC-----------------TCCTTACTTAGC-CCAC---TC-C-G--CTTTT-TGCCCCC-ACAGA------------------------CACACAAACACACACACACACATCCATACATTTTGCGTTTTCTCCATA------------------------------------------TTTCTTTGTCTCTCTGTCTAACTCG--TTACACT
droVir3 scaffold_12723:2435312-2435565 + dvi_1359 TGCCAAAGTGCCGGTGGATCAAAAAGAGGCCCTGGCATCTGATCTCATGGGTGAGTAAT-C-------------CA----------------AAA---GA------------------AAAAAACAA---------TTATGAA---T---TTCTAACGAATGTGCCT-------T-CGAAT--------------------------------------------------------------------ATTAACTGTGAAAGCTTA--AGGTACA----TGCGA-AA-------------ATTGTA----------------------TGTACA--TAT-------------------------ATGAATACACATAT--GTATATACATAC-----G-TACA--TACTTCAC-----------------AATTATCTACGC-TCC----------C-CTTTTG------------------------------------------------------------------------CGTTTTCTCCATA------------------------------------------TTTCTTTGT--------CTCGGCTTACTTTCGGC
droMoj3 scaffold_6500:15610251-15610505 + TGCCAAAGTGCCGGTGGATCAAAAGGAGGCGCTGGCATCCGATCTCATGGGTAAGTG-----------------CA-------------------------------------------------AG---------TAGAACT---------------------------------------------------ACAACAAAAGAAAGGTGAATCCGGAG---CCGGAAGACCCCTATCCGATTGGACCTTTAACTGTGAAAGCAGA--AAGTACA----TGCGA-------------------------AAAATT-------------TATATGCATGT-------------------------ATGT--------AT--GTATGTG-----TGTA---TACA--TACTTCGC-----------------ATTTAGCTGCGC-GCT-------CCC--CTTTTCCG----------T--------------------------------------------------------TTTCTCTCTCTCCATG------------------------------------------TTTCTTTGT--------CTACG----------CT
droGri2 scaffold_15252:1880098-1880361 - TGCCAAAGTGCCTGTGGATCAAAAAGAGGCGCTCGCATCCGATCTCATGGGTGAGTTGA----TTA-------------------ATCT-C-CAT---GC------------------ACA------------AAATATA--CCCTAAT--------------------------------------------------------------------------CCAAATTAC---ATTCCAAGTAA---TTTATCTGTGAAAGCTGTGGAAAGGCA----TACAA----------------------------------------CAGACACACA--TGC---------ATACTTAACTGCGAAAAT----------TTGT--ATGTA-----CATA---CACA--TATTTCGC-----------------TCTCTTTTACA-----------------C--TCCTGCCCCC-TTTTT----------------------------------------------------------GCGTTTTCTCCATA------------------------------------------TTTCTTTGT--------CTCGGCTTACATTCATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGCCAAGGTGCCGGTGGACCAGAAGGAGGCCCTGGCATCCGATCTCATGGGTTCGTT--------------------------------------------------------------------AA---------TAATGCT---C---TTTTAAGTACCGTTGCC-------TTTTTGCGTG--------------------GT-----------------------------------------------------------GGTGCG--C--CCCCTACGAAAA-------------ATTGTGCAAATTA----------CCAGCTGTGCT--TGT-------------------------GTGTGTGCGTGCAT--GTATGTA-----TGTAT-TTT--CGTACTCGAC-----------------TGTTATCTGCTT-CCC----------CTC--TCTCGCCCGC-ACCGC----------------------------------------------------------TCTCTTTCTCTTCT------------------------------------------CTTCTTTGT--------CT--GCTT--TTTCACTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............GGTGGACCAGAAGGAGGCCCTGGCATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00220000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CGTACTCGAC-----------------TGTTATCTGCT........................................................................................................................................................................................2112.00220000000000000000
.............GTGGACCAGAAGGAGGCCCTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000001000
...........CGGTGGACCAGAAGGAGGCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
......GGTGCCGGTGGACCAGAAGGAGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
............GGTGGACCAGAAGGAGGCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
........TGCCGGTGGACCAGAAGGAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000010000
..........CCGGTGGACCAGAAGGAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
...CAAGGTGCCGGTGGACCAGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
TGCCAAGGTGCCGGTGGACCAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000000000
................................................................................................................................................................................TTTGCGTG--------------------GT-----------------------------------------------------------GGTGCG--C--CCCC..........................................................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
.GCCAAGGTGCCGGTGGACCAGAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
..........................AGGCCCTGGCATCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
...........CGGTGGACCAGAAGGAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
droSec2
TGCCAAGGTGCCGGTGGACCAGAAGGAGGCCCTGGCATCCGATCTCATGGGTTCGTT--------------------------------------------------------------------AA---------TAATGCT---C---TTTTAAGTACCGTTGCC-------TTTTTGCGTG--------------------GT-----------------------------------------------------------GGTGAG--C--CCCCCACGAAAA-------------ATTGTGCAAATTA----------CCAGCTGTGCT--TGT-------------------------GTGTGTGCGTGTAT--GTATGTA-----TGTAT-TTT--CGTACTCGAC-----------------TGTTATCTGCTT-CCC----------CTC--TCTCGCCCGC-TCCGC----------------------------------------------------------TCTCTTTCTCT---------------------------------------------TTTCTTTGT--------CT--GCTT--TTTCACTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.GCCAAGGTGCCGGTGGACCAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
.................................GGCATCCGATCTCATGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.........GCCGGTGGACCAGAAGGAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.........GCCGGTGGACCAGAAGGAGGCCCTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001
............GGTGGACCAGAAGGAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
dm3
AGCCAAGGTGCCGGTGGACCAAAAGGAGGCCCTGGCATCCGATCTCATGGGTTCGTT--------------------------------------------------------------------AA---------TAATGCT---C---TTTTAAGTCCCGTTGCC-------TTTTTGCTTG--------------------GC-----------------------------------------------------------GGTGAG--C--CCCCCACGAAAA-------------ATTGTGCAAATTA----------CCAGCTGTGCT--TGT-------------------------GTGTGTGCGTGGTT--GTATGTA-----TGTAT-TTT--CGTACTCGAC-----------------TGTTATCTGCTT-CCC----------CTC--TCTCGCCCGC-ACCAC----------------------------------------------------------TCTCTTTCTCTTCT------------------------------------------CTTCTTTGT--------CT--GCCT--TTTCACTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....AAGGTGCCGGTGGACCAAAAGGAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GACCAAAAGGAGGCCCTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AGCCAAGGTGCCGGTGGACCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GGACCAAAAGGAGGCCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TGCCGGTGGACCAAAAGGAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000000
.................ACCAAAAGGAGGCCCTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................GT-------------------------GTGTGTGCGTGGTT--GTATGTA-----TGTAT-...................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GACCAAAAGGAGGCCCTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................GGCATCCGATCTCATGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCGTGGTT--GTATGTA-----T........................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
..CCAAGGTGCCGGTGGACCAAAAGGAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.........................................................................................................................................AATGCT---C---TTTTAAGTCCCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
............GGTGGACCAAAAGGAGGCCCTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................GTAT-TTT--CGTACTCGAC-----------------TGTTATCT...........................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GGTGGACCAAAAGGAGGCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CGGTGGACCAAAAGGAGGCCCTGGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AGGTGCCGGTGGACCAAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................................................GT-------------------------GTGTGTGCGTGGTT--GTATG................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................GTGCT--TGT-------------------------GTGTGTGCGTG..........................................................................................................................................................................................................................................................1921.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CAAATTA----------CCAGCTGTGCT--TGT-------------------------.....................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................................................GCT--TGT-------------------------GTGTGTGCGTGG.........................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
..........................AGGCCCTGGCATCCGATCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AGGTGCCGGTGGACCAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GTGGACCAAAAGGAGGCCCTGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....AGGTGCCGGTGGACCAAAAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCTGCTT-CCC----------CTC--TCTCG...............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................GCTTG--------------------GC-----------------------------------------------------------GGTGAG--C--CCCCCACG......................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................TTTGCTTG--------------------GC-----------------------------------------------------------GGTGAG--C--CCCCACG.......................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GGTGGACCAAAAGGAGGCCCTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AAGGAGGCCCTGGCATCCGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GTGCCGGTGGACCAAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................CCAAAAGGAGGCCCTGGCATCCGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AGGCCCTGGCATCCGATCTCATGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AGCCAAGGTGCCGGTGGACCAAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTCTTCT------------------------------------------CTTCTTTGT--------CT--G............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
..........................................TCTCATGGGTTCGTT--------------------------------------------------------------------AA---------TAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CAAATTA----------CCAGCTGTGCT--TG...............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CAAGGTGCCGGTGGACCAAAAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CAAGGTGCCGGTGGACCAAAAGGAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..........................................................................................................................................................AAGTCCCGTTGCC-------TTTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CCAAGGTGCCGGTGGACCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................CGTGGTT--GTATGTA-----TGTAT-TTT--CG............................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.........GCCGGTGGACCAAAAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................................................GCTGTGCT--TGT-------------------------GTGTGTGC.............................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................A----------CCAGCTGTGCT--TGT-------------------------GTG..................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CAAGGTGCCGGTGGACCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....AAGGTGCCGGTGGACCAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............GGTGGACCAAAAGGAGGCCCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GGACCAAAAGGAGGCCCTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TGGACCAAAAGGAGGCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CTGGCATCCGATCTCATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.GCCAAGGTGCCGGTGGACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................T-------------------------GTGTGTGCGTGGTT--GTATG................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........CGGTGGACCAAAAGGAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........GCCGGTGGACCAAAAGGAGGCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................................................................................................TA----------CCAGCTGTGCT--TGT-------------------------GTGT.................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AAAAGGAGGCCCTGGCATCCGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GGTGGACCAAAAGGAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................GTGCT--TGT-------------------------GTGTGTGCGT...........................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................ATCCGATCTCATGGGTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TGCT---C---TTTTAAGTCCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGCCAAGGTGCCGGTGGACCAGAAGGAGGCCCTGGCATCCGATCTCATGGGTTCGTT--------------------------------------------------------------------AA---------TAATGCT---C---TTTTAAGTCCCGTTGCC-------TTTTTGCCTGGGTAGGAGTCACGGTGGGGGGT-----------------------------------------------------------GGGGGG--A--CCCCCTCGAAAA-------------ATTGTGCAAATTA----------CCAGCTGTGCT--TGT-------------------------GTGTGCGCG--TGT--GTATGTA-----TGTAT-TTT--CGTACTCGAC-----------------TGTTATCTGCTT-CCC----------CTC--ACTCGCCCGC-ACCGC----------------------------------------------------------TCTCTTTCTCTTCT------------------------------------------CTTCTTTGT--------CTCCGCTT--TTTCACTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
AGCCAAGGTGCCGGTGGACCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020001010
....AAGGTGCCGGTGGACCAGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------------CTTCTTTGT--------CTCCGCTT--TTTCACT2511.0011000000
......................................................................................................................................................................................................................................................................................................................................AGCTGTGCT--TGT-------------------------GTGTGCGCG--TGT--GT...................................................................................................................................................................................................................................................2611.0010000010
.....AGGTGCCGGTGGACCAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
........TGCCGGTGGACCAGAAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.GCCAAGGTGCCGGTGGACCAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.......................AGGAGGCCCTGGCATCCGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001
droYak3
TGCCAAGGTGCCGGTGGACCAGAAGGAGGCCCTGGCATCCGATCTCATGGGTTCGTT--------------------------------------------------------------------AA---------TAATGCT---C---TTTTAAGTCCCGTTGCC-------T-----------------------------------------------------------------------------------------------------------CGAAAA-------------TTTGTGCAAATTA----------CCAGCTGTGCT--TGT-------------------------GTGTG--CGTGTGT--GTATGTA-----TGTAT-TTT--CGTACTCGAC-----------------TGTTATCTGCTC-ACC----------CTC--TCTCGCCCGC-ACCGT----------------------------------------------------------TCTCTTTCTCTTCT------------------------------------------CTTCTTTGT--------CTCTGCCT--TTTCACTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.GCCAAGGTGCCGGTGGACCAGAAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
TGCCAAGGTGCCGGTGGACCAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.......................AGGAGGCCCTGGCATCCGATCTCATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
..................CCAGAAGGAGGCCCTGGCATCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
TGCCAAGGTGCCGGTGGACCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGAC-----------------TGTTATCTGCTC-ACC----------.........................................................................................................................................................................2211.00100100000000
.......................................................................................................................................................................................................................................................................................................................................GCTGTGCT--TGT-------------------------GTGTG--CGTGTGT--.....................................................................................................................................................................................................................................................2311.00101000000000
droEug1
AGCCAAAGTGCCGGTGGACCAGAAGGAGGCCCTGGCATCCGATCTCATGGGTTAGTT--------------------------------------------------------------------CA---------AAAT--T---G---TTTTAA-------TGTC-------TTTTTT-----------------------------------------TC-----------------------------------------------------CCCAG-TTAAAA-------------ATTGTGCAAATTA----------CCAGCTGTGCG--TGT-------------------------GTGT------GTAT--GTATGTA-----TGTAT-TTT--C--ACTCGAC-----------------TGTTATCTGCAC-CCC----------CTC--TCTC--------------------------CGTCTCCCTC---------------------------------TTCCTTTTCCTTGCCCTAGCACTCTTTTTCCCTTTTTCT----------------CTTTTCTTTGT--------CTCGGCTT--TTTCACTSizeHit CountTotal NormTotal
No Reads
droBia1
AGCCAAGGTGCCGGTGGACCAGAAGGAGGCCCTGGCATCCGATCTCATGGGTGAGTCTTGCCATTACAATTTCACTGGAAAATTCCCCC-T-TTTTTGCC--------------------------A-----C----------------------------------TCTCTTTT-----------------------------------------------------------------------------------------------------------CCAAAA-------------ATCGTGCAAATTA----------CCAGCTGTGCG--TGT-------------------------GTGT----------GT--GT-------------G-TATG--TACTCGAC-----------------TGTTATCTGCGC-CCC----------C-CTTTGCCGCCC------------------------------------------------------------------TCTCCTTCTCTTCT------------------------------------------CTTCTTTGT--------CTCGGCTT--TTTCACTSizeHit CountTotal NormTotal
No Reads
droTak1
AGCCAAGGTGCCGGTGGACCAGAAGGAGGCCCTCGCATCCGATCTCATGGGTACGTTTT--------------------------------------TAC-------------------------AA-----TATTTAAT--TCCTCCT---------------CCT-------TTTT--------------------------------------------------------------------------------------------------TTCTTTCG-AAA-------------ATTGTGCAAATTA----------CCAGCTGTGCG--TGT-------------------------GTGT--------------GTGTA-----TGTA---CT--CGTATTCGAC-----------------TGTTATCTGCAC-CCC----------CTC--TC---CCTGT-CTCAC----------------------------------------------------------TCTCTTTCTCCTTT------------------------------------------CTTCTTTGT--------CTCGGCTT--TTTCACTSizeHit CountTotal NormTotal
No Reads
droEle1
TGCCAAGGTGCCGGTGGACCAGAAGGAAGCCCTGGCATCTGATCTCATGGGTTCGTTTC----------------------------CCTTTTTTTTTAC------------------TTTAGT-AATAGTGTGA---TT--T---C---TTT------------------TTTT---------------------------------------------TTA-----------------------------------------------------CCTTC-CCAAAA-------------GTTGTGCAAATTA----------CCAGCTGTGCA--TGT-------------------------GTGTGTGT----GTGT--AT-------------G-TATG--TACTCGAC-----------------TCTTATCTGCC--CCC----------CTC--TCTCG----------C----------------------------------------------------------TCTCTTTCTCTGTT------------------------------------------CTTCTTTGT--------CTCGGCTT--TTTCACTSizeHit CountTotal NormTotal
No Reads
droRho1
AGCCAAGGTGCCGGTGGACCAGAAGGAGGCCCTTGCATCCGATCTCATGGGTTCGTCTT---------------------------------TTTTCTAC--------------------------ATACTATGATTAATTTT---C---TTTTTA------------------------------------------------------------------------------------------------------------------------CCCTC-CCAAAA-------------ATTGTGCAAATTA----------CCAGCTGTGCG--TGT-------------------------GTGT----------GT--GT-------------G-TATG--TACTCGAC-----------------TGTTATCTGCCC-CCC----------GTC--TC------------------------------------------------------------------------TCTCTTTCTCT---------------------------------------------GTTCTTTGT--------CTCGGCTT--TTTCACTSizeHit CountTotal NormTotal
No Reads
droFic1
TGCCAAGGTGCCGGTCGACCAAAAGGAGGCCCTGGCATCCGATCTCATGGGTTAGTTA-----------------------------------------CATATGTATATTTTTATGTAC-----CA---------TAAT--T---GCTCTTTTTA------------------------------------------------------------------------------------------------------------------------CCCCCAC-AAAA-------------ATTGTGCAAATTA----------CCAGCTGTGCG--TGT-------------------------GTG----------------T-------------G-TATG--TACTCGAC-----------------TGTTATCTGCGACCCC----------CTC--TCTCACTGTCTTCCTC---------------------------------------------------TCTCTTTTCGTTTTCTCTGCC------------------------------------------CTTCTTTGT--------CTCGGCTT--TTTCACTSizeHit CountTotal NormTotal
No Reads
droKik1
TGCCAAGGTGCCGGTGGACCAGAAGGAGGCCCTGGCATCCGATCTCATGGGTTAGTTGTGC----------C---------------CCTT-TTTT-------------------TGT---------------------------------------TC-----GCCTTTCTTTT---------------------------------------------TCA-----------------------------------------------------CCCTG-CC-GAA-------------ATTGTGCAAATTA----------CCAGCTGTGTG--CGT------GTG-----------------T----------GTGT--GT-------------G-TATG--TACTCGAC-----------------TCTTATCTGAGC-CCTCTGCCTCCCCCTC--TTTCGCTCT------------------------------------------------------------------CTCATTCTCGCTT-------------------CCTCTCTTTCGCTCTCTACAACCTTTCTTTGT--------CTCGGCTT--TCACACTSizeHit CountTotal NormTotal
No Reads
droAna3
AGCCAAGGTGCCGGTGGACCAGAAGGAGGCCCTGGCATCCGATCTCATGGGTTAGTATT-CCATTA-------------------ACCC-T-TATTCCCC--------------------------A---------------------T---------------ACTTTTCTTAT------------------------------------------------C-----------CAATCTAG------------------------------------------CAA-------------TTTGTGCAAATTG----------CCAGCTGTGCG--CCA-------------------------GTGTGTG----------------------------TGTG--TACTCGACTCGACTCGACTCGACTCTCTTATCTGAGC-CGC----CT-CGCCTC--TCCGG----------C----------------------------------------------------------TCTCTCTATCTGCC-----------------------------------------CTTTCTTTGT--------CTCCACTT--TTACACTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................GGCATCCGATCTCATGGGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
............GGTGGACCAGAAGGAGGCCCTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.......GTGCCGGTGGACCAGAAGGAGGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
......GGTGCCGGTGGACCAGAAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
................GACCAGAAGGAGGCCCTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
............GGTGGACCAGAAGGAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
....................AGAAGGAGGCCCTGGCATCCGATCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
....AAGGTGCCGGTGGACCAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
droBip1
TGCCAAGGTGCCGGTGGACCAGAAGGAGGCCCTGGCATCCGATCTCATGGGTTCGTAACTCCATTA-------------------ACCC-T-TATTCTGC-------------------------AG-----TTTTTATT--TCCTCCT---------------TCA-------TAT----------------------------------------------------CCC---CAATCTAG------------------------------------------CAA-------------TTTGTGCAAATTG----------CCAGCTGTGTGCCAGT------GTG-----------------T----------GTGT--GT-------------G-TGTG--TACTCGAC---------------TCTCTTATCTGAGC-CGC----CT-CGCCTC--TCCC----GG-----C--------------------------------------------------------TCTCTCTCTATCTGCC-----------------------------------------CTTTCTTTGT--------CTCCACTT--TTATACTSizeHit CountTotal NormTotal
No Reads
dp5
TGCCAAAGTGCCGGTGGATCAGAAGGAGGCTCTGGCATCCGATCTCATGGGTAAGTG-----------------CG-------------------------------------------------AA---------TCGTGAT-CCGCTCTTTT-------------------------------------------------------------------TC-----------------------------------------------------CCCGTTTGAAAAAATGTTCGTATGTATTGTGCAAAAAATTGTACGTCTCCAGCTGTCTGTCTGTATGAGTATG-----------------T----------GTGT--GT-------------G-TATG--TACTCGAC-----------------TCTTATCTGGGC-TCC---------A--CTTTT--GCCTT-----GTTCTTTGTCTCTCTCCCTCTCTCTC----------------------------------TC--------------------------------------------------------TCTTTCT--------CT-GGCTT--TCACACTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............TGGATCAGAAGGAGGCTCTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000200
...............................CTGGCATCCGATCTCATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020200000000
......AGTGCCGGTGGATCAGAAGGAGGCTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
....AAAGTGCCGGTGGATCAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..........CCGGTGGATCAGAAGGAGGCTCTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000001
...CAAAGTGCCGGTGGATCAGAAGGAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
...CAAAGTGCCGGTGGATCAGAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000001
...............GGATCAGAAGGAGGCTCTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...CAAAGTGCCGGTGGATCAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.....................GAAGGAGGCTCTGGCATCCGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
....AAAGTGCCGGTGGATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.......................AGGAGGCTCTGGCATCCGATCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...........CGGTGGATCAGAAGGAGGCTCTGGCATCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000001
............GGTGGATCAGAAGGAGGCTCTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000001
......AGTGCCGGTGGATCAGAAGGAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
TGCCAAAGTGCCGGTGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010000
.........GCCGGTGGATCAGAAGGAGGCTCTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTC----------------------------------TC--------------------------------------------------------TCTTTCT--------CT-GGC...........1960.1710100000000
.......................................................................................................................................................................................................................................................................................................................................................AGTATG-----------------T----------GTGT--GT-------------G-TATG--A...........................................................................................................................................................................................................................19140.0710000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTCCCTCTCTCTC----------------------------------TC--------------------------------------------------------TC..............................21200.0510100000000
droPer2
TGCCAAAGTGCCGGTGGATCAGAAGGAGGCTCTGGCATCCGATCTCATGGGTAAGTG-----------------CG-------------------------------------------------AA---------TAGTGAT-CCGCTCTTTT-------------------------------------------------------------------TC-----------------------------------------------------CCCGTTTGAAAAAATGTTCGTATGTATTGTGCAAAAAATTGTACGTCTCCAGCTGTCTGTCTGTATGAGTATG-----------------T----------GTGT--GC-------------G-TATG--TACTCGAC-----------------TCTTATCTGGGC-TCC---------A--CTTTT--GCCTT-----GTTCTTTGTCTCTCTCCC------------------------------------------TCTCTCTCTC----------------------------------------------TCTCTTTCT--------CT-GGCTT--TCACACTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................GATCAGAAGGAGGCTCTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.......GTGCCGGTGGATCAGAAGGAGGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
...............................CTGGCATCCGATCTCATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droWil2
TGCCAAAGTGCCGGTTGATCAAAAGGAGGCTCTGGCATCTGATCTCATGGGTAAATCTA----TT------TC-CT---------------------------------------------------------------------------AAAAAAT--------------------TCCATA--------------------GT-----------------------------------------------------------GTTGAA--------------------------------------AAAAA----ACTTCTTTTTTTCTTTTGCTGCATTTGTATG-----------------T----------ATGT--AT--------------TTGGT--TACTTATC-----------------TCCTTACTTAGC-CCAC---TC-C-G--CTTTT-TGCCCCC-ACAGA------------------------CACACAAACACACACACACACATCCATACATTTTGCGTTTTCTCCATA------------------------------------------TTTCTTTGTCTCTCTGTCTAACTCG--TTACACTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........CGGTTGATCAAAAGGAGGCTCTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200020
................GATCAAAAGGAGGCTCTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200110
.....AAGTGCCGGTTGATCAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.............GTTGATCAAAAGGAGGCTCTGGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000
.............GTTGATCAAAAGGAGGCTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
............GGTTGATCAAAAGGAGGCTCTGGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
....AAAGTGCCGGTTGATCAAAAGGAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
.................................GGCATCTGATCTCATGGGTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
TGCCAAAGTGCCGGTTGATCAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100001
.....................AAAGGAGGCTCTGGCATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
......AGTGCCGGTTGATCAAAAGGAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
......AGTGCCGGTTGATCAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
......................AAGGAGGCTCTGGCATCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
....................AAAAGGAGGCTCTGGCATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
.............................CTCTGGCATCTGATCTCATGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
................GATCAAAAGGAGGCTCTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
TGCCAAAGTGCCGGTTGATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
......AGTGCCGGTTGATCAAAAGGAGGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
.................ATCAAAAGGAGGCTCTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
...............................CTGGCATCTGATCTCATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
......AGTGCCGGTTGATCAAAAGGAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
.............GTTGATCAAAAGGAGGCTCTGGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000
droVir3
TGCCAAAGTGCCGGTGGATCAAAAAGAGGCCCTGGCATCTGATCTCATGGGTGAGTAAT-C-------------CA----------------AAA---GA------------------AAAAAACAA---------TTATGAA---T---TTCTAACGAATGTGCCT-------T-CGAAT--------------------------------------------------------------------ATTAACTGTGAAAGCTTA--AGGTACA----TGCGA-AA-------------ATTGTA----------------------TGTACA--TAT-------------------------ATGAATACACATAT--GTATATACATAC-----G-TACA--TACTTCAC-----------------AATTATCTACGC-TCC----------C-CTTTTG------------------------------------------------------------------------CGTTTTCTCCATA------------------------------------------TTTCTTTGT--------CTCGGCTTACTTTCGGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......AGTGCCGGTGGATCAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000000000000000000002000000000000000000000000000000000
............GGTGGATCAAAAAGAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000010000100000000000000000000000000000000000000000000000000
............GGTGGATCAAAAAGAGGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000010000000000000000000000000000000000000000000000000000010
TGCCAAAGTGCCGGTGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000000000000000000001000000000000000000000000000001000
.............GTGGATCAAAAAGAGGCCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000010000000000000000000000000000
TGCCAAAGTGCCGGTGGATCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
...........CGGTGGATCAAAAAGAGGCCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000010000000000000000000000000000000000000000000000000000000
..CCAAAGTGCCGGTGGATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...............GGATCAAAAAGAGGCCCTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.............................CCCTGGCATCTGATCTCATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
...........................GGCCCTGGCATCTGATCTCATGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
....AAAGTGCCGGTGGATCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
TGCCAAAGTGCCGGTGGATCAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000001000000000000000000000000000
droMoj3
TGCCAAAGTGCCGGTGGATCAAAAGGAGGCGCTGGCATCCGATCTCATGGGTAAGTG-----------------CA-------------------------------------------------AG---------TAGAACT---------------------------------------------------ACAACAAAAGAAAGGTGAATCCGGAG---CCGGAAGACCCCTATCCGATTGGACCTTTAACTGTGAAAGCAGA--AAGTACA----TGCGA-------------------------AAAATT-------------TATATGCATGT-------------------------ATGT--------AT--GTATGTG-----TGTA---TACA--TACTTCGC-----------------ATTTAGCTGCGC-GCT-------CCC--CTTTTCCG----------T--------------------------------------------------------TTTCTCTCTCTCCATG------------------------------------------TTTCTTTGT--------CTACG----------CTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................GATCAAAAGGAGGCGCTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.......................AGGAGGCGCTGGCATCCGATCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...CAAAGTGCCGGTGGATCAAAAGGAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
............................GCGCTGGCATCCGATCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
...........................................................................................................................................................................................................................................TATCCGATTGGACCTTTAACTG.................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
................GATCAAAAGGAGGCGCTGGCATCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..........CCGGTGGATCAAAAGGAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
............GGTGGATCAAAAGGAGGCGCTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.............................................................................................................................................................................................................................................................................................................................................................................ATGT--------AT--GTATGTG-----TGTA---TAC...............................................................................................................................................................................................................................20100.101100000
.............................................................................................................................................................................................................................................................................................................................................................................ATGT--------AT--GTATGTG-----TGTA---TA................................................................................................................................................................................................................................19200.051000100
droGri2
TGCCAAAGTGCCTGTGGATCAAAAAGAGGCGCTCGCATCCGATCTCATGGGTGAGTTGA----TTA-------------------ATCT-C-CAT---GC------------------ACA------------AAATATA--CCCTAAT--------------------------------------------------------------------------CCAAATTAC---ATTCCAAGTAA---TTTATCTGTGAAAGCTGTGGAAAGGCA----TACAA----------------------------------------CAGACACACA--TGC---------ATACTTAACTGCGAAAAT----------TTGT--ATGTA-----CATA---CACA--TATTTCGC-----------------TCTCTTTTACA-----------------C--TCCTGCCCCC-TTTTT----------------------------------------------------------GCGTTTTCTCCATA------------------------------------------TTTCTTTGT--------CTCGGCTTACATTCATTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....AAAGTGCCTGTGGATCAAAAAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101
..CCAAAGTGCCTGTGGATCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
.....................AAAAGAGGCGCTCGCATCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101
..................................GCATCCGATCTCATGGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50110
...................................CATCCGATCTCATGGGCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1980.13101

Generated: 05/19/2015 at 02:11 AM