ID:

dsi_5365

 Coordinate:

3l:16191985-16192232 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-1.7 -1.0 -0.8

Flybase annnotation

five_prime_UTR [3l_16192273_16192541_-]; CDS [3l_16192233_16192272_-]; exon [3l_16191620_16191984_-]; CDS [3l_16191620_16191984_-]; exon [3l_16192233_16192541_-]; intron [3l_16191985_16192232_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCATTTTCCGATGAAAATGGACGCCGACAGCAGTGGAACCGAGCATCGAGGTACCCACTATATAGTATAACCGATCTGATCAGATTCTGATCCAGTGCCATCTTTTTGTTGTTTTTTTTCTAGTGTCATATTGTGTGAAATGTGAAATGGATGAGAATGAACGCTGCACGACCAGACAGAGAAAGAGAAGCTAGGACAATAGGACTCTCAACTGCGCATTACGTGGATTCCGTCTCCGACGATGCGCCAAACACTGTGTGTTGGATGCATTGACTTACCCCACTCTTTTTCCACTTAGATTCCCGTGGCTCAAGGTCGCGATCCTGGCGAGAAAGAGAACACCATGGG
***********************************************************************************************************************************************************........(((......)))...............................********************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902008
ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 O001
Testis
 SRR553488
RT_0-2 hours eggs
.....................CGCCGACAGCAGTGGAAC..................................................................................................................................................................................................................................................................................................................... 18 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................ATCTGACGAGATTCTGAAC................................................................................................................................................................................................................................................................ 19 3 17 2.41 41 17 0 24 0 0 0 0 0 0 0 0 0 0
.......CCGATGAAAATGGACGCC................................................................................................................................................................................................................................................................................................................................... 18 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0
......................GCCGACAGCAGTGGAACC.................................................................................................................................................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
........................CGACAGCAGTGGAACCGAGCATCGA........................................................................................................................................................................................................................................................................................................... 25 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
....................ACGCCGACAGCAGTGGAACC.................................................................................................................................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.........................GACAGCAGTGGAACCGAGCATCGAGG......................................................................................................................................................................................................................................................................................................... 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.........GATGAAAATGGACGCCGA................................................................................................................................................................................................................................................................................................................................. 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................ATGGCTCAGATTGAACGCTG...................................................................................................................................................................................... 20 3 5 1.20 6 0 0 0 1 0 0 3 0 0 2 0 0 0
...............................AGTGGAACCGAGCATCGAG.......................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...................GACGCCGACAGCAGTGGAACC.................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AATGAACGCTGCACGACC............................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................GACGCCGACAGCAGTGGAACCGAGCA............................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........GATGAAAATGGACGCCGACAGCAGT.......................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAGCTAGGACAATAGGACT.............................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................CGATCTGATCAGATTCTGATCCAG............................................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................CGACAGCAGTGGAACCGAGCATC............................................................................................................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......CCGATGAAAATGGACGCCGAC................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................ATGGATGAGAATGAACGCTGCC.................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................ATGGACGCCGACAGCAGTG......................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................CACGACCAGACAGAGAAAGAGAAGCTA........................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................ACAATAGGACTCTCAACTG...................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GACAGAGAAAGAGAAGCTAGGACA...................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
........................CGACAGCAGTGGAACCGA.................................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................AAATGTGAAATGGATGAGAATG............................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........GATGAAAATGGACCCCGAC................................................................................................................................................................................................................................................................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................ACACTGTGTGTTGGATGCATTG............................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................GAGCATCGAGGTACCCACTAT............................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................AAAGAGAAGCTAGGACAATAGGAC............................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................CGACAGCAGTGGAACCGAGCATCGAGG......................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......TCCGATGAAAATGGACGC.................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................ATGGACGCCGACAGCAGTGGAACCGG.................................................................................................................................................................................................................................................................................................................. 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................GACAGAGAAAGAGAAGCTAGGACAA..................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................CGACAGCAGTGGAACCGAGCAT.............................................................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................TGGACGCCGACAGCAGTGGAACCGAGC................................................................................................................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................CCGACAGCAGTGGAACCGAGCATCGAG.......................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................CACGACCAGACAGAGAAAGAGAAGC............................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................CACTGTGTGTTGGATGCATTG............................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................CAGCAGTGGAACCGAGCATCGAG.......................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................GTGGCTCAAGGTCGCGATCCTGGC.................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TGAACGCTGCACGACCAGACAG......................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GAAGCTAGGACAATAGGACT.............................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................AACGCTGCACGACCAGA............................................................................................................................................................................ 17 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................CCGACAGCAGTGGAACCGAGCATCGT........................................................................................................................................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................TCCTGGCGAGAAAGAGAACACCAT... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................ACTTAGATTCCCGTGGCTCAAGGT................................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................TGGACGCCGACAGCAGTGGAACCGAGCAT.............................................................................................................................................................................................................................................................................................................. 29 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................CAGTGGAACCGAGCATCGAGG......................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......TCCGATGAAAATGGACGCC................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CGCATTACGTGGATTCCGTCTCCGA............................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AAGAGAAGCTAGGACAATAGGACTC............................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TGAAAGAGATGAGAATGAACTCT....................................................................................................................................................................................... 23 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................GTGGATTCCGTCACC............................................................................................................... 15 1 6 0.33 2 0 0 0 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................TTCCCGTGGCATTAGGTCGC............................. 20 3 8 0.25 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................GTGTTGGATGCAGTGA........................................................................... 16 1 13 0.23 3 0 0 0 3 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TGGCTCAGATTGAACGCTG...................................................................................................................................................................................... 19 3 20 0.20 4 0 0 0 0 0 0 1 0 0 0 0 0 3
........................................................................................................................................................TAGAATGAACGGTGCACAACC............................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................TCAGAATGAACGCTG...................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................................TCCGACGATCCGCCA................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................CTGCGCATTACCTGGAA........................................................................................................................ 17 2 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................GTGAATTGGATGAGA................................................................................................................................................................................................ 15 1 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................CTGGCTCAGAATGAACGCT....................................................................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................................................................................................................................................GGCTCAATGTCGGGACCC........................ 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................ATGGCTCAGAACGAACGCT....................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CGTAAAAGGCTACTTTTACCTGCGGCTGTCGTCACCTTGGCTCGTAGCTCCATGGGTGATATATCATATTGGCTAGACTAGTCTAAGACTAGGTCACGGTAGAAAAACAACAAAAAAAAGATCACAGTATAACACACTTTACACTTTACCTACTCTTACTTGCGACGTGCTGGTCTGTCTCTTTCTCTTCGATCCTGTTATCCTGAGAGTTGACGCGTAATGCACCTAAGGCAGAGGCTGCTACGCGGTTTGTGACACACAACCTACGTAACTGAATGGGGTGAGAAAAAGGTGAATCTAAGGGCACCGAGTTCCAGCGCTAGGACCGCTCTTTCTCTTGTGGTACCC
**********************************************************************************************************************************************........(((......)))...............................*********************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O002
Head
 M024
male body		 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
.....................................................................................................................................................................................................................................GGCAGAGGCTGCTACGCGGTT.................................................................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GCAGAGGCTGCTACGCGGTTT................................................................................................. 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................CAGGCTGCTACGCGGTTTGT............................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................AGAGGCTGCTACGCGGTTT................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................GTGACACACAACCTACGTAAC............................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GGCAGAGGCTGCTACGCGGTTT................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................TACTTGCGACGTGCTGGTCTG........................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................................AAAAAAAAGATCAGGGTATAG........................................................................................................................................................................................................................ 21 3 15 0.13 2 0 0 0 0 0 0 2 0 0
...........................................................TATATAATATTCGCTAGACTT............................................................................................................................................................................................................................................................................ 21 3 9 0.11 1 0 0 0 0 0 0 0 1 0
......AGGCTACTTCTGCCTGC..................................................................................................................................................................................................................................................................................................................................... 17 2 9 0.11 1 0 0 0 0 1 0 0 0 0
.......................GGCTGTCCTCAACTTGG.................................................................................................................................................................................................................................................................................................................... 17 2 11 0.09 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................TGGTTGAGAAAAAGGTGA..................................................... 18 2 14 0.07 1 0 0 0 0 1 0 0 0 0
..........................................AGTAGCTCGATGGGTGA................................................................................................................................................................................................................................................................................................. 17 2 18 0.06 1 0 0 0 0 1 0 0 0 0
............................................................................................................AAAAAAAAAAAGATCAGGGTAT.......................................................................................................................................................................................................................... 22 3 19 0.05 1 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................CTCTTCGAGTCTGTTATG.................................................................................................................................................. 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0
.......................GGCTGTCCTCAACTTG..................................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0
.......................GGCTGTCCGCAGCTTGGC................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1 0 0 0

Generated: 04/24/2015 at 02:50 AM