dsi_5338

Name	Class	Family	Strand
(CTG)n	Simple_repeat	Simple_repeat	+
CT-rich	Low_complexity	Low_complexity	+
TART_DV	LINE	Jockey	-

CAACAATAACGGTAACACCAAGTCACGTGATCGCGCCGATCATCATCTGCAGTCGCAGCAGCAGGAGCACGACGATGATGAGGATGACGACGAGGAGGATGGCGAGGAGGAAGAGGATGAGGATGACGAGGAGCAGCACCAGGAGCAGCAGCAGCAGCAGCAGCAGCATCAGGGCAATGGGCATGATCTCACGCCCACGGACCTGCGACATCTGATGCCGGCGAGCAACAATATGCAGCAACAGCATACG ***********************************************************************.....................................................**************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M025 embryo	SRR553488 RT_0-2 hours eggs	M053 female body	SRR553485 Chicharo_3 day-old ovaries	M024 male body	GSM343915 embryo	M023 head
............................................................GCTGGAGCGCGACGATGATG..........................................................................................................................................................................	20	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................................GAGGAGGAAGAGGATGAGGATGA............................................................................................................................	23	0	2	0.50	1	0	1	0	0	0	0	0	0
.........................................................................GATGATGAGGATGACGACGA.............................................................................................................................................................	20	0	3	0.33	1	0	0	0	0	1	0	0	0
............................................................GCTGGAGCGCGACGATGAT...........................................................................................................................................................................	19	2	3	0.33	1	1	0	0	0	0	0	0	0
........................................................................................GACGAGTAGGCTGGCGTGGAG.............................................................................................................................................	21	3	3	0.33	1	0	0	0	1	0	0	0	0
..................CAAGTCCCGTGATCGCCCCA....................................................................................................................................................................................................................	20	3	3	0.33	1	0	0	1	0	0	0	0	0
.......................................................................................CGACGAGTAGGATGGCGCGGCG.............................................................................................................................................	22	3	4	0.25	1	0	0	1	0	0	0	0	0
........................................................................................................AAGAGGAAGAGGATGAGGATG.............................................................................................................................	21	1	4	0.25	1	0	1	0	0	0	0	0	0
............................................................GCTGGAGCGCGACGATGATGATGA......................................................................................................................................................................	24	3	5	0.20	1	1	0	0	0	0	0	0	0
.............................................................CTGGAGCGCGACGATGAT...........................................................................................................................................................................	18	2	6	0.17	1	1	0	0	0	0	0	0	0
............................................................GCTGGAGCGCGACGATGATGATG.......................................................................................................................................................................	23	3	6	0.17	1	1	0	0	0	0	0	0	0
....................................................................ACGACGATGATGAGGATT....................................................................................................................................................................	18	1	12	0.17	2	0	0	0	0	0	2	0	0
...............................................................................................................AGAGGATGAGGATGACGATA.......................................................................................................................	20	2	9	0.11	1	0	0	0	0	0	1	0	0
.........................................................................................ACGAGTAGGCAGGCGAGGAGG............................................................................................................................................	21	3	11	0.09	1	0	0	0	0	0	0	1	0
..............................................................TGGAGCGCGACGATGAT...........................................................................................................................................................................	17	2	18	0.06	1	1	0	0	0	0	0	0	0
......................................................................GACGATGATATGGATGACG.................................................................................................................................................................	19	2	20	0.05	1	0	0	0	0	0	1	0	0
......................................................................GATGATGATGAGGATGACGAC...............................................................................................................................................................	21	1	20	0.05	1	0	0	0	0	0	0	0	1

GTTGTTATTGCCATTGTGGTTCAGTGCACTAGCGCGGCTAGTAGTAGACGTCAGCGTCGTCGTCCTCGTGCTGCTACTACTCCTACTGCTGCTCCTCCTACCGCTCCTCCTTCTCCTACTCCTACTGCTCCTCGTCGTGGTCCTCGTCGTCGTCGTCGTCGTCGTCGTAGTCCCGTTACCCGTACTAGAGTGCGGGTGCCTGGACGCTGTAGACTACGGCCGCTCGTTGTTATACGTCGTTGTCGTATGC **************************************************************************************************************************.....................................................***********************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
.........................GCACTAGCGCGGCTAGTAGTAGACGT.......................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0
...............................GCGCGGCTAGTAGTA............................................................................................................................................................................................................	15	0	1	1.00	1	1	0	0	0	0
.............................................................................................................................................................................................................................GGTCGTTGTTGTACATCGTTGTCGT....	25	3	3	0.33	1	0	1	0	0	0
............................................................CGACCTCGCGCTGCTACTA...........................................................................................................................................................................	19	2	3	0.33	1	1	0	0	0	0
............................CTACCGCGGGTAGTAGTA............................................................................................................................................................................................................	18	2	13	0.23	3	3	0	0	0	0
........................................................................................................................................................................................CTTGGGTGCGGATGCCTGGA..............................................	20	3	5	0.20	1	1	0	0	0	0
................................................................................................................................................................................................................GTAGACTACGTCCGTTCGTC......................	20	3	5	0.20	1	0	0	1	0	0
............................................................CGACCTCGCGCTGCTACTACTA........................................................................................................................................................................	22	3	7	0.14	1	1	0	0	0	0
.................................................................................................................TCCTACTCCTGCTGTTCGTCGT...................................................................................................................	22	3	17	0.12	2	0	0	2	0	0
........................................................................................................................................................................AGTCTCGTTACCCGT...................................................................	15	1	20	0.05	1	0	0	0	1	0
............................CGAGCGCGGCTAGTTG..............................................................................................................................................................................................................	16	2	20	0.05	1	1	0	0	0	0
..........................................................................................................................................................................................AGAATGCGGGTGCCTC................................................	16	2	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	x:9976572-9976821 -	dsi_5338	CAACAATAAC---------GGTAACACCAAG-----------------TCACGTGA---------TCGCGCCGATCATCATCTGCAG-----------------------------------------T------------CGCAGCAGC------------------------------AGGA---GC---------------ACGACG---ATGATGAGGATGA---CGACGAGGAGGATGGCGAGGAG---GAAGAGGATGAGGATGACGAGGAG---------C---AGCA------------------------------------------CCAG------G---AGCAGCAGCAGC---------------------------AGCA---GCAGCAGCATCAGGGCAATGG------GCA-TGATCTCACGCCCACGGACCTGCGACATC-----TGATGCCG---GCGAGCA------AC----------------------A--------------------------------------------ATATG---CAG--------------------------------------------------------------------------------------CAACAGC---------ATACG
droSec2	scaffold_15:1216025-1216262 -		CAACACTAAC---------GGTAACACCAAG-----------------TCACGTGA---------TCGCGCCGATCATCATCTGCAG-----------------------------------------T------------CGCAGCAGC------------------------------AGGA---GC---------------ACGACG---ATGATGAGGATGA---CGACGAGGAGGATGGCGAGGAG---GAAGAGGATGAGGATGACGAGGAG---------C---AGCA------------------------------------------CCAG------G------------------------------------------AGCA---GCAGCAGCATCAGGGCAATGG------GCA-TGATCTCACGCCCACGGACCTGCGACATC-----TGATGCCG---GCGAGCA------AC----------------------A--------------------------------------------ATATG---CAG--------------------------------------------------------------------------------------CAACAGC---------ATACG
dm3	chrX:10511663-10511906 -		CAACAATAAC---------GGTAACACCAAG-----------------TCACGTGA---------TCGCGCCGATCATCATCTGCAG-----------------------------------------T------------CGCAGCAGCAGC---------------------------AAGA---GC---------------ACGACG---ATGACGAGGATGA---CGACGAGGAGGAGGGCGAGGAG---GACGAGGATGAGGATGACGAGGAG---------C---AGCA------------------------------------------CCAG------G------------------------------------------AGCAGCAGCAGCAACATCAGGGCAATGG------GCA-TGATCTCACGCCCACGGACCTGCGACATG-----TGATGCCG---GCTAGCA------AC----------------------A--------------------------------------------ACTTG---CAG--------------------------------------------------------------------------------------CAACAGC---------ATACG
droEre2	scaffold_4690:4616163-4616415 +		CAACAATAAC---------GGCAACACCAAG-----------------TCGCGGGA---------TCGCGGCGATCATCATCTGCAG-----------------------------------------T------------CGCAGCAGCAGCAAT---------CGCAGCAAGCGCAGCAGGC---GC---------------AGGACG---ATGACGACGAGGA---CGACGAGGAGGATGGCGAGGAG---GACGACGAGGAGGACGACGAGGAG---------C---AGCA------------------------------------------C------------------------------------------------------------CACCAGCAGCAGGGCAATGG------GCA-TGATCTCACGCCCACGGACCTCCGACATG-----TGATGCCG---GCGAGCA-------------------------GCAACA--------------------------------------------ACATG---CAGCA--------------------------------------------------------------------------------------ACAGC---------ATCCG
droYak3	X:19080684-19080951 -		CAACAATAAC---------GGCAGCACCAAG-----------------TCACGAGA---------TCGCGCCGATCATCATCTGCAG-----------------------------------------T------------CACAGCAGCAGCAACAGCAGCAGATGCAGCAAGCGCA---------AC------AGCAGGCACAAGACG---ATGACGAGGAGGA---CGACGAGGAGGAGGGCGAGGAG---GACGATGATGAGGATGACGAGGAG---------C---AGCA------------------------------------------C------------------------------------------------------CA---TCAGCAGCAACAGGGCAATGG------GCA-TGATCTCACGCCCACGGACCTGCGACATG-----TGTTGCCT---GCGAGCA------AC----------------------A--------------------------------------------ACATG---CAGCAG-----------------------------------------------------------------------------------CAACAGC---------ATACG
droEug1	scf7180000409538:186066-186307 +		CAA---TAAC---------GGCAACAGCAAG-----------------TCTCGAGA---------TCGCGACGATC---ACCTGCAG-----------------------------------------G------------CACAACAAC------------------------------AATC---GC---------------AAGATGATGAGGATGAGGAGGACGAC---T------A---TGATGAG---GATGAGGAAGATGAGGAGGAGGAG---------C---AGCA------------------------------------------G------CATCGTCACCAGCAACAGC---------------------------AGCA---GCAGCAGCAACAGGGTAATGG------GCA-TGACCTTACGCCCACGGACCTGCGGCATG-----TGCTGCCG---CCTAGCA------ATCACGATC---------------------------------------------------------------------AG--------------------------------------------------------------------------------------CAACAGCA--------ACACG
droBia1	scf7180000302126:3411981-3412255 -		TAACAAT------------GGCAACAGCAAG-----------------TCGAGGGA---------TCGCGACGATC---ACCTGCAG-----------------------------------------GCACAGCAGCAGTC------------------------GCAGCAGTCGCAGCAGCC---GC---------------AGGACGACGAGGACGAGGACGAGGAC---T------A---CGACGAG---GACGAGGAGGAGGACGAGGAGGAG---------C---AGCA------------------------------------------CCAG------CAG------CAGCAGC---------------------------AGCA---GCAGCATCAGCAGGGCAACGG------GCAGTGACCTCACGCCCACGGACCTGCGACATG-----TGCTGCCC---AGCAGCA------ACCACGATCAGCA---GCAGCAGCAACATC------------------------------------------AG---CAGCAGCAG--------------------------------------------------------------------------------------C---------AGCAG
droTak1	scf7180000415394:329292-329535 -		CAACAATAAC---------GGCAACGGCAAG-----------------TCGCGCGA---------TCGCGACGATC---ATCTGCAG-----------------------------------------GCGCAGCAGCAATC------------------------GCAG------CAGCAGCA---GC---------------AGGAAGATGAAGATGAGGACGAGGAT---T------A---CGACGAG---GATGAGGAGGAGGACGAGGAGGAG---------C---A------------------------------------------------------------------------------------------------------------------GCAGGGAAATGG------GCA-TGACCTCACGCCCACGGACCTGCGACATG-----TGCTGCCC---TCCAGCA------ACCACGAGCAGCA---GCAGCAACAGCAAC------------------------------------------AGCAGCAACAGCAG--------------------------------------------------------------------------------------C---------AACAC
droEle1	scf7180000491087:107855-108113 +		CAATAATAAC---------AACAACAATAAC-----------------T----------------------------------ATGG-----------------------------------------CCGCAGCAGCAGTC------------------------GGAG------CAGCAGCA---GCTCACAAAGCAGCC--TGGACGAAGAGGAGGACGACGAGGAG---G------A---CGAAGAG---GACGAGGAGGAGGATCAGGAGGAGGCAGTGTCCC---AGCA------------------------------------------CCAG------C------------------------------------------AGCA---GCAGCAGCAACA----------------------------------------------AC-----T--GGCGGCCGAGCAACA------ACAACGGGCAGCT---GCAGCAGCGGCCGTCGTGGCAGCGGCGGTCAGTGCGC-TGCACAACG---GCAACA------AGCAGCAG--------------------------------------------------------------------------------------C---------AGCAG
droRho1	scf7180000780277:35867-36140 -		CAACAATAAC---------GGCAGCAGCAAG-----------------TCACGAGA---------TCGTGACGATC---ACCTGCAG-----------------------------------------GCACAGCAGCAACA---------------------------GCAATCGCAGCAGCC---GC---------------AGGACGAAGAGGACGAGGAGGACGAC---T------A---CGACGAG---GATGAGGAGGAGGACGAGGAGGAG---------C---AGCA------------------------------------------TCAG------CAG------CATCAGC---------------------------AGCA---TCGCCAGCAGCAGGGCAACGG------TCA-TGATCTAACACCCACAGACCTGCGACATG-----TCCTGCCG---CCCAGCC------ATCACGATCAGCA---GCAGCATCAGCAAC------------------------------------------AG---CAGCAGCAA--------------------------------------------------------------------------------------C---------ATTTG
droFic1	scf7180000454050:471713-472001 -		CAACAATAAT---------GGCAACAGCAAG-----------------ACGCGAGA---------TCGCGACGATC---ACCTGCAG-----------------------------------------GTGCAGCAGCAATC------------------------GCAG------CAGCAGGC---GC---------------AGGACGAAGAGGATGAGGAGGATGAC---T------A---CGATGAG---GATGAGGAGGAGGACGAGGAGGAG---------C---ACCA------------------------------------------ACAG------CAG------CAGCAGCAACAGCAGCAGGTAAACCGCCACCAGCAGCA---GCAGCAGCAGCAGGGCAACGG------GCA-TGATCTCACGCCCACCGACCTGCGACATG-----TGTTGCCC---GCCAGTC------ATCACGATCAGCA---ACAGCAG------------------------------------------------------CAACATCAG--------------------------------------------------------------------------------------C---------AGCAG
droKik1	scf7180000302698:593192-593441 +		CAATAACAAT---------GGCAACAGCAAG-----------------CGA---GATCAGCGGGAACGTGAAGATC---ACTTGCAA-----------------------------------------T------------CGCAGCAGC------------------------------AGCAGGCGC---------------CGCCAG---AGGAAGAGGATGAAGAC---T------A---CGACGAG---GAGGAGGAAGATGATGAAGAGGAA---------GATCACCA------------------------------------------CCAC------C------------------------------------------ATCA---GCAGCAGCAGCAGGGCAATGG------TCA-TGATCTGGGACCCACAGATCTCAGGCATG-----TCCTGCCC------------------CATGATCCACA---GCAGCAGCAACAGT------------------------------------------TG---CAGCAACAA--------------------------------------------------------------------------------------C---------AACAG
droAna3	scaffold_13117:4521667-4521898 -	dan_1383	CAACAACAAC---------AACAATAACAAG-----------------TTAAGATT---------AAGCGAAGA------------A-----------------------------------------C------------CGCAGCAGC------------------------------AGCA---GC---------------ATCATGACGACGATGATGAAGATGAT---T------A---TGATGATGATGAGGAGGACGAGGATGATGAGGAT---------C---ATCA------------------------------------------TCAT------C------------------------------------------ATCA---TCATCAGGATCAGGGTAATGG------ACA-CGATCTAACACCCGAAGATCTGCGGCACA-----TGATAC---------------------ACGATCCCCA---GCAGCAGCAGCAGC------------------------------------------AG---CAGCAACAG--------------------------------------------------------------------------------------T---------CGCAG
droBip1	scf7180000396022:3538-3769 -		CAACAATAAC---------AGTAGCCACAAG-----------------CTAAGATT---------AAGCGAAGATCC------GCAG-----------------------------------------CAGCAGCAACAGTC------------------------GCAG------CAGCAGCA---GC---------------AGCATGAAGACGATGATGAAGACGAT---T------A---CGATGATGATGAAGAGGATGAGGAAGATGAGGAT---------C---ATCA---------------------------------------------------------------------------------------------------------TCAGGATCAGGGTAATGG------ACA-CGATCTAACGCCCACAGATCTGCGGCACA-----TGATAC---------------------ACGATCCGCA---GCAGCAGCAACAGT------------------------------------------CG---C------AG--------------------------------------------------------------------------------------C---------AGCAG
dp5	XL_group1e:5881827-5882097 -	dps_2709	CAACATTAAC---------AACAACAGCAAG-----------------GGGCGAGAGCTACGAGAACTGCACGATCC---TCAGCAG-----------------------------------------CAGC---------AGCAGCAAC------------------------------AGCA---AC------ATC------ATCCAGAAGATGAGGAGGAAGACGAC---T------A---CGACGAGGATGATGAGGACGATGATGAAGAGGAGCCA------C---AACA------------------------------------------CCAG------C------------------------------------------AGCA---GCAGCAACAACATGGCAATGGACTTGGCCA-TGACCTCACGCCCACAGATCTGCGTCACG-----TCCTGCCA---TCCAGCACCACCCATCACGATCATCT---CCAC---------------------------------------------------------CAGCAG-----------------------------------------------------------------------------------CAACA------------GCAG
droPer2	scaffold_0:5813869-5814113 -		CTGAGATGGAG--------GAGACGACCATG-----------------TCG--------------CCGCCGCAATCATCATCGG-AG-----------------------------------------C------------AGCAGCAGC------------------------------AGCA---GC---------------ACCACC---ACCACCACCATCA---GCACCAGGACGAGGACCCGCAG---CG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCGAAATGAAGAATCTAGCCA------------------CACTTTGTTCAGCAGCAGCAGCGGCCGC------------------------------------------------TGCTGTGGCAGCAGGCCACAAGGATGAAGATGACCTCAGTACAGATCAATACAGTGATGAGGACGATGCTATGGGC------------GATGAGA---------ATACG
droWil2	scf2_1100000004515:3771087-3771348 -		CACAAGCAGCAACAACAACAGCAGCAGCAAG-----------------TCAAGAGA---------TCATCTGGAAG---AGCAGCAA-----------------------------------------T------------CACAGCAGC------------------------------CAGC---AG---------------AAGACG---ATGATGAAGACGA---T---T------A---CGATGACGATGATGACGATGAGGACGAAGAAGAA---------C---ACCA------------------------------------------GCAA---CATCAA---------CACCAACACCAACAG---------CAGCAGCAGCA---ACAACAACAACAAGACAATGG------ACA-TGATCAAACGCCCACAGACCTGCGCCATG-----TTCTGCCG---C------------------------------AGCATCATCAAC------------------------------------------AG---CAGCAACAA--------------------------------------------------------------------------------------C---------ATCAG
droVir3	scaffold_12970:7508781-7509002 +		CCGCACTGCC---------CGCCGATTTGCG-----------------GCACGGAATCAGC----TCG-CACGAT---CA------G-----------------------------------------A------------GCCAGGAGC------------------------------CGGC---GG---------------ACTACG---ATGACGAGGATGA---GGACGAGGAAGACGATGACGAG---GATGAGGATGCGGC-------------------C---AGCAGTCATCTGGACAGCCGCACGGCGCTAACATCAACGCATCTGAGCAG---CAGC-------------------------------------------------------------------------------------------------------------------GCCGCC-----------------------------------------GCCGAG---AGCAGCGGC-----TTGCACAT--------------GAGCG---CAGTGGCCG--------------------------------------------------------------------------------------C---------GGCCG
droMoj3	scaffold_6500:2415650-2415866 +		CAGCAGCAAC---------AGCAGTTCCAAG-----------------CACCATCG---------GCGCGACAAGCATCAC-AGCAA-----------------------------------------A------------AGCAC---------------------------------CAGCA---GC---------------ACT--------GAGATCAATCA---TACCG------------------------AATTGGATAACAAGCAGCAA---------C---AGCA------------------------------------------ACAG------CAA------CAACAGC---TGCAACAG---------CAGC---AGCA---G------------------------------------------------------------------------------------------------CAGCA---GCAGCAGCAACAAC---AGCAGCAG------TTGCACACGCTCAACACCAGCGAGGAG---GAG--------------------------------------------------------------------------------------CAACAGCAGCCCTCCCAGTCG
droGri2	scaffold_15203:7100689-7100918 -		CAACAACAAC---------GGCAACAACATCAGCTAGGCGACGACAAGCCGTGC----------------------------AACAACCGCACCAACGTCGAACAACGCCAATTAGCGGCGAGGGCGGCGGCAGCAGCAGTC------------------------GCAG------CAGCAGCA---CC---------------A---------------------------------------------------------------------GCAG---------C---AGCA------------------------------------------CTTGCAG---CAG------CAGCAAC------------------------------G---ACAGCAGCATCAG--CAACAG------CAA-CAAA------------------------------------------------------------AACACCA---ACAGCAG------------------------------------------------------CAACAACAA----------------------------------------------------------CAACACCGGCAACAAATAATAACCATAAC---------ATCCG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CAACAATAAC---------GGTAACACCAAG-----------------TCACGTGA---------TCGCGCCGATCATCATCTGCAG-----------------------------------------T------------CGCAGCAGC------------------------------AGGA---GC---------------ACGACG---ATGATGAGGATGA---CGACGAGGAGGATGGCGAGGAG---GAAGAGGATGAGGATGACGAGGAG---------C---AGCA------------------------------------------CCAG------G---AGCAGCAGCAGC---------------------------AGCA---GCAGCAGCATCAGGGCAATGG------GCA-TGATCTCACGCCCACGGACCTGCGACATC-----TGATGCCG---GCGAGCA------AC----------------------A--------------------------------------------ATATG---CAG--------------------------------------------------------------------------------------CAACAGC---------ATACG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................................................................................................................................................................................GAGGAG---GAAGAGGATGAGGATGA..................................................................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................G---ATGATGAGGATGA---CGACGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................ACGACG---ATGATGAGGATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	12	0.17	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................AGAGGATGAGGATGACGATA.............................................................................................................................................................................................................................................................................................................................................................................................................	20	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CAACACTAAC---------GGTAACACCAAG-----------------TCACGTGA---------TCGCGCCGATCATCATCTGCAG-----------------------------------------T------------CGCAGCAGC------------------------------AGGA---GC---------------ACGACG---ATGATGAGGATGA---CGACGAGGAGGATGGCGAGGAG---GAAGAGGATGAGGATGACGAGGAG---------C---AGCA------------------------------------------CCAG------G------------------------------------------AGCA---GCAGCAGCATCAGGGCAATGG------GCA-TGATCTCACGCCCACGGACCTGCGACATC-----TGATGCCG---GCGAGCA------AC----------------------A--------------------------------------------ATATG---CAG--------------------------------------------------------------------------------------CAACAGC---------ATACG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

CAACAATAAC---------GGTAACACCAAG-----------------TCACGTGA---------TCGCGCCGATCATCATCTGCAG-----------------------------------------T------------CGCAGCAGCAGC---------------------------AAGA---GC---------------ACGACG---ATGACGAGGATGA---CGACGAGGAGGAGGGCGAGGAG---GACGAGGATGAGGATGACGAGGAG---------C---AGCA------------------------------------------CCAG------G------------------------------------------AGCAGCAGCAGCAACATCAGGGCAATGG------GCA-TGATCTCACGCCCACGGACCTGCGACATG-----TGATGCCG---GCTAGCA------AC----------------------A--------------------------------------------ACTTG---CAG--------------------------------------------------------------------------------------CAACAGC---------ATACG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................GC---------------ACGACG---ATGACGAGGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................AGGAG---------C---AGCA------------------------------------------CCAG------G------------------------------------------AGC........................................................................................................................................................................................................................................................................................	18	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCACGGACCTGCGACATG-----TGA................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AGCAACATCAGGGCAATGG------G........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................GCA------------------------------------------CCAG------G------------------------------------------AGCAGCAGCA.................................................................................................................................................................................................................................................................................	18	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCACGGACCTGCGACATG-----TG.................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................GAGGAGGAGGGCGAGGAG---G..................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................................................................................................................................................................................................................TGACGAGGATGA---CGACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
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.....................................................................................................................................................................................................................................................................................G---------C---AGCA------------------------------------------CCAG------G------------------------------------------AGCAGCAGCAGCA..............................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................GCA------------------------------------------CCAG------G------------------------------------------AGCAGCAGCAGCA..............................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................GGAG---------C---AGCA------------------------------------------CCAG------G------------------------------------------AGCA.......................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................AG---------C---AGCA------------------------------------------CCAG------G------------------------------------------AGCAGCA....................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................A------------------------------------------CCAG------G------------------------------------------AGCAGCAGCAGC...............................................................................................................................................................................................................................................................................	18	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GAGGATGACGAGGAG---------C---AGAG------------------------------------------................................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GAGGATGA---CGACGAGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CAACAATAAC---------GGCAACACCAAG-----------------TCGCGGGA---------TCGCGGCGATCATCATCTGCAG-----------------------------------------T------------CGCAGCAGCAGCAAT---------CGCAGCAAGCGCAGCAGGC---GC---------------AGGACG---ATGACGACGAGGA---CGACGAGGAGGATGGCGAGGAG---GACGACGAGGAGGACGACGAGGAG---------C---AGCA------------------------------------------C------------------------------------------------------------CACCAGCAGCAGGGCAATGG------GCA-TGATCTCACGCCCACGGACCTCCGACATG-----TGATGCCG---GCGAGCA-------------------------GCAACA--------------------------------------------ACATG---CAGCA--------------------------------------------------------------------------------------ACAGC---------ATCCG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................................................................................................................................................................................................ACGAGGAGGACGACGAGG.............................................................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	0	1	0	0	0

droYak3

CAACAATAAC---------GGCAGCACCAAG-----------------TCACGAGA---------TCGCGCCGATCATCATCTGCAG-----------------------------------------T------------CACAGCAGCAGCAACAGCAGCAGATGCAGCAAGCGCA---------AC------AGCAGGCACAAGACG---ATGACGAGGAGGA---CGACGAGGAGGAGGGCGAGGAG---GACGATGATGAGGATGACGAGGAG---------C---AGCA------------------------------------------C------------------------------------------------------CA---TCAGCAGCAACAGGGCAATGG------GCA-TGATCTCACGCCCACGGACCTGCGACATG-----TGTTGCCT---GCGAGCA------AC----------------------A--------------------------------------------ACATG---CAGCAG-----------------------------------------------------------------------------------CAACAGC---------ATACG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................................................................................................................................TGATGAGGATGACGAGGAA---------T---..............................................................................................................................................................................................................................................................................................................................................................................................	20	14	0.07	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

CAA---TAAC---------GGCAACAGCAAG-----------------TCTCGAGA---------TCGCGACGATC---ACCTGCAG-----------------------------------------G------------CACAACAAC------------------------------AATC---GC---------------AAGATGATGAGGATGAGGAGGACGAC---T------A---TGATGAG---GATGAGGAAGATGAGGAGGAGGAG---------C---AGCA------------------------------------------G------CATCGTCACCAGCAACAGC---------------------------AGCA---GCAGCAGCAACAGGGTAATGG------GCA-TGACCTTACGCCCACGGACCTGCGGCATG-----TGCTGCCG---CCTAGCA------ATCACGATC---------------------------------------------------------------------AG--------------------------------------------------------------------------------------CAACAGCA--------ACACG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TAACAAT------------GGCAACAGCAAG-----------------TCGAGGGA---------TCGCGACGATC---ACCTGCAG-----------------------------------------GCACAGCAGCAGTC------------------------GCAGCAGTCGCAGCAGCC---GC---------------AGGACGACGAGGACGAGGACGAGGAC---T------A---CGACGAG---GACGAGGAGGAGGACGAGGAGGAG---------C---AGCA------------------------------------------CCAG------CAG------CAGCAGC---------------------------AGCA---GCAGCATCAGCAGGGCAACGG------GCAGTGACCTCACGCCCACGGACCTGCGACATG-----TGCTGCCC---AGCAGCA------ACCACGATCAGCA---GCAGCAGCAACATC------------------------------------------AG---CAGCAGCAG--------------------------------------------------------------------------------------C---------AGCAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAACAATAAC---------GGCAACGGCAAG-----------------TCGCGCGA---------TCGCGACGATC---ATCTGCAG-----------------------------------------GCGCAGCAGCAATC------------------------GCAG------CAGCAGCA---GC---------------AGGAAGATGAAGATGAGGACGAGGAT---T------A---CGACGAG---GATGAGGAGGAGGACGAGGAGGAG---------C---A------------------------------------------------------------------------------------------------------------------GCAGGGAAATGG------GCA-TGACCTCACGCCCACGGACCTGCGACATG-----TGCTGCCC---TCCAGCA------ACCACGAGCAGCA---GCAGCAACAGCAAC------------------------------------------AGCAGCAACAGCAG--------------------------------------------------------------------------------------C---------AACAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAATAATAAC---------AACAACAATAAC-----------------T----------------------------------ATGG-----------------------------------------CCGCAGCAGCAGTC------------------------GGAG------CAGCAGCA---GCTCACAAAGCAGCC--TGGACGAAGAGGAGGACGACGAGGAG---G------A---CGAAGAG---GACGAGGAGGAGGATCAGGAGGAGGCAGTGTCCC---AGCA------------------------------------------CCAG------C------------------------------------------AGCA---GCAGCAGCAACA----------------------------------------------AC-----T--GGCGGCCGAGCAACA------ACAACGGGCAGCT---GCAGCAGCGGCCGTCGTGGCAGCGGCGGTCAGTGCGC-TGCACAACG---GCAACA------AGCAGCAG--------------------------------------------------------------------------------------C---------AGCAG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAACAATAAC---------GGCAGCAGCAAG-----------------TCACGAGA---------TCGTGACGATC---ACCTGCAG-----------------------------------------GCACAGCAGCAACA---------------------------GCAATCGCAGCAGCC---GC---------------AGGACGAAGAGGACGAGGAGGACGAC---T------A---CGACGAG---GATGAGGAGGAGGACGAGGAGGAG---------C---AGCA------------------------------------------TCAG------CAG------CATCAGC---------------------------AGCA---TCGCCAGCAGCAGGGCAACGG------TCA-TGATCTAACACCCACAGACCTGCGACATG-----TCCTGCCG---CCCAGCC------ATCACGATCAGCA---GCAGCATCAGCAAC------------------------------------------AG---CAGCAGCAA--------------------------------------------------------------------------------------C---------ATTTG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAACAATAAT---------GGCAACAGCAAG-----------------ACGCGAGA---------TCGCGACGATC---ACCTGCAG-----------------------------------------GTGCAGCAGCAATC------------------------GCAG------CAGCAGGC---GC---------------AGGACGAAGAGGATGAGGAGGATGAC---T------A---CGATGAG---GATGAGGAGGAGGACGAGGAGGAG---------C---ACCA------------------------------------------ACAG------CAG------CAGCAGCAACAGCAGCAGGTAAACCGCCACCAGCAGCA---GCAGCAGCAGCAGGGCAACGG------GCA-TGATCTCACGCCCACCGACCTGCGACATG-----TGTTGCCC---GCCAGTC------ATCACGATCAGCA---ACAGCAG------------------------------------------------------CAACATCAG--------------------------------------------------------------------------------------C---------AGCAG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAATAACAAT---------GGCAACAGCAAG-----------------CGA---GATCAGCGGGAACGTGAAGATC---ACTTGCAA-----------------------------------------T------------CGCAGCAGC------------------------------AGCAGGCGC---------------CGCCAG---AGGAAGAGGATGAAGAC---T------A---CGACGAG---GAGGAGGAAGATGATGAAGAGGAA---------GATCACCA------------------------------------------CCAC------C------------------------------------------ATCA---GCAGCAGCAGCAGGGCAATGG------TCA-TGATCTGGGACCCACAGATCTCAGGCATG-----TCCTGCCC------------------CATGATCCACA---GCAGCAGCAACAGT------------------------------------------TG---CAGCAACAA--------------------------------------------------------------------------------------C---------AACAG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CAACAACAAC---------AACAATAACAAG-----------------TTAAGATT---------AAGCGAAGA------------A-----------------------------------------C------------CGCAGCAGC------------------------------AGCA---GC---------------ATCATGACGACGATGATGAAGATGAT---T------A---TGATGATGATGAGGAGGACGAGGATGATGAGGAT---------C---ATCA------------------------------------------TCAT------C------------------------------------------ATCA---TCATCAGGATCAGGGTAATGG------ACA-CGATCTAACACCCGAAGATCTGCGGCACA-----TGATAC---------------------ACGATCCCCA---GCAGCAGCAGCAGC------------------------------------------AG---CAGCAACAG--------------------------------------------------------------------------------------T---------CGCAG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................................................................................................................................................................................................GACGAGGATGATGAGGAT---------..................................................................................................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCCA---GCAGCAGCAGCA...............................................................................................................................................................	19	9	0.11	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA---GCAGCAGCAGCAGC------------------------------------------AG---CAGC..........................................................................................................	23	20	0.10	2	0	0	0	0	0	2
.....................................................................................................................................................................................................................................................................................T---------C---ATCA------------------------------------------TCAT------C------------------------------------------ATCA---TCATCAGA............................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1

droBip1

CAACAATAAC---------AGTAGCCACAAG-----------------CTAAGATT---------AAGCGAAGATCC------GCAG-----------------------------------------CAGCAGCAACAGTC------------------------GCAG------CAGCAGCA---GC---------------AGCATGAAGACGATGATGAAGACGAT---T------A---CGATGATGATGAAGAGGATGAGGAAGATGAGGAT---------C---ATCA---------------------------------------------------------------------------------------------------------TCAGGATCAGGGTAATGG------ACA-CGATCTAACGCCCACAGATCTGCGGCACA-----TGATAC---------------------ACGATCCGCA---GCAGCAGCAACAGT------------------------------------------CG---C------AG--------------------------------------------------------------------------------------C---------AGCAG	Size	Hit Count	Total Norm	Total
No Reads

dp5

CAACATTAAC---------AACAACAGCAAG-----------------GGGCGAGAGCTACGAGAACTGCACGATCC---TCAGCAG-----------------------------------------CAGC---------AGCAGCAAC------------------------------AGCA---AC------ATC------ATCCAGAAGATGAGGAGGAAGACGAC---T------A---CGACGAGGATGATGAGGACGATGATGAAGAGGAGCCA------C---AACA------------------------------------------CCAG------C------------------------------------------AGCA---GCAGCAACAACATGGCAATGGACTTGGCCA-TGACCTCACGCCCACAGATCTGCGTCACG-----TCCTGCCA---TCCAGCACCACCCATCACGATCATCT---CCAC---------------------------------------------------------CAGCAG-----------------------------------------------------------------------------------CAACA------------GCAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................................................................................................TGATGAGGACGATGATGAAGAGGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................GATGATGAGGACGATGATGAA.................................................................................................................................................................................................................................................................................................................................................................................................................	21	3	1.00	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................CGACGAGGATGATGAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................GATGATGAGGACGATGATGAAG................................................................................................................................................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................GATGAGGACGATGATGAAG................................................................................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TGAGGACGATGATGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	1
............................................................................................................................................................................................................................................................ATGATGAGGACGATGATGAA.................................................................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................GATGATGAGGACGATGATGA..................................................................................................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................GATGATGAGGACGATGATG...................................................................................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................CAGC---------AGCAGCAAC------------------------------AGCA---AC------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................G------C------------------------------------------AGCA---GCAGCAACAACAT.......................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................C---AACA------------------------------------------CCAG------C------------------------------------------AGCA---GCAGC...............................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

CTGAGATGGAG--------GAGACGACCATG-----------------TCG--------------CCGCCGCAATCATCATCGG-AG-----------------------------------------C------------AGCAGCAGC------------------------------AGCA---GC---------------ACCACC---ACCACCACCATCA---GCACCAGGACGAGGACCCGCAG---CG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCGAAATGAAGAATCTAGCCA------------------CACTTTGTTCAGCAGCAGCAGCGGCCGC------------------------------------------------TGCTGTGGCAGCAGGCCACAAGGATGAAGATGACCTCAGTACAGATCAATACAGTGATGAGGACGATGCTATGGGC------------GATGAGA---------ATACG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
CTGAGATGGAG--------GAGACGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	3	0	0	0	0	0
...........................................................................CATCATCGG-AG-----------------------------------------C------------AGCAGCAGC------------------------------AGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTATGGGC------------GATGAGA---------.....	19	1	2.00	2	0	0	0	0	0	2
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGGCCACAAGGATGAAGATGAC...........................................................................	26	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAGCCA------------------CACTTTGTTCAGC............................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGATGCTATGGGC------------GATGAG...............	22	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACGATGCTATGGGC------------GATGAGA---------A....	25	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACGATGCTATGGGC------------GATGAGA---------.....	24	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACAGTGATGAGGAC.............................................	18	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAGGATGAAGATGACC..........................................................................	19	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAGTGATGAGGACGAT..........................................	20	1	1.00	1	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGACGATGCTATGGGC------------G....................	22	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................A---GCACCAGGACGAGGACCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTATGGGC------------GATGAGA---------AT...	21	1	1.00	1	0	0	0	0	0	1
.....................................................................CGCAATCATCATCGG-AG-----------------------------------------C------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTAGCCA------------------CACTTTGT.................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCAGCAGCAGCAGCGGCCGC------------------------------------------------TGCT.........................................................................................................	28	1	1.00	1	0	1	0	0	0	0
................................................................................TCGG-AG-----------------------------------------C------------AGCAGCAGC------------------------------AGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	9	0.11	1	1	0	0	0	0	0

droWil2

CACAAGCAGCAACAACAACAGCAGCAGCAAG-----------------TCAAGAGA---------TCATCTGGAAG---AGCAGCAA-----------------------------------------T------------CACAGCAGC------------------------------CAGC---AG---------------AAGACG---ATGATGAAGACGA---T---T------A---CGATGACGATGATGACGATGAGGACGAAGAAGAA---------C---ACCA------------------------------------------GCAA---CATCAA---------CACCAACACCAACAG---------CAGCAGCAGCA---ACAACAACAACAAGACAATGG------ACA-TGATCAAACGCCCACAGACCTGCGCCATG-----TTCTGCCG---C------------------------------AGCATCATCAAC------------------------------------------AG---CAGCAACAA--------------------------------------------------------------------------------------C---------ATCAG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGACAATGG------ACA-TGATCAAACG...........................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................................T------A---CGATGACGATGATGACGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	1	0	0
................................................................................................................................................................................................................................GA---T---T------A---CGATGACGATGATGACGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................A---------CACCAACACCAACAG---------CAGCA.............................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................GATGATGACGATGAGGACGA..................................................................................................................................................................................................................................................................................................................................................................................................................	20	8	0.13	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................GATGATGACGATGAGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................	18	8	0.13	1	0	0	0	1	0
...............................................................................................................................................................................................................................CGA---T---T------A---CGATGACGATGATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................	21	8	0.13	1	0	1	0	0	0
.ACAAGCAGCAACAACAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	9	0.11	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................AACACCAACAG---------CAGCAGCA..........................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	2	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAC------------------------------------------AG---CAGCAACAA--------------------------------------------------------------------------------------C---------.....	18	20	0.05	1	0	0	0	1	0
.........CAACAACAACAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................AACACCAACAG---------CAGCAGC...........................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................GATGACGATGATGACGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0

droVir3

CCGCACTGCC---------CGCCGATTTGCG-----------------GCACGGAATCAGC----TCG-CACGAT---CA------G-----------------------------------------A------------GCCAGGAGC------------------------------CGGC---GG---------------ACTACG---ATGACGAGGATGA---GGACGAGGAAGACGATGACGAG---GATGAGGATGCGGC-------------------C---AGCAGTCATCTGGACAGCCGCACGGCGCTAACATCAACGCATCTGAGCAG---CAGC-------------------------------------------------------------------------------------------------------------------GCCGCC-----------------------------------------GCCGAG---AGCAGCGGC-----TTGCACAT--------------GAGCG---CAGTGGCCG--------------------------------------------------------------------------------------C---------GGCCG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................................................................................................................................................................................................................GACGAGGATGA---GGACGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	8	0.13	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CAGCAGCAAC---------AGCAGTTCCAAG-----------------CACCATCG---------GCGCGACAAGCATCAC-AGCAA-----------------------------------------A------------AGCAC---------------------------------CAGCA---GC---------------ACT--------GAGATCAATCA---TACCG------------------------AATTGGATAACAAGCAGCAA---------C---AGCA------------------------------------------ACAG------CAA------CAACAGC---TGCAACAG---------CAGC---AGCA---G------------------------------------------------------------------------------------------------CAGCA---GCAGCAGCAACAAC---AGCAGCAG------TTGCACACGCTCAACACCAGCGAGGAG---GAG--------------------------------------------------------------------------------------CAACAGCAGCCCTCCCAGTCG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................G-----------------CACCATCG---------GCGCGACAAGCATCAC-AG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAACACCAGCGAGGAG---GAG--------------------------------------------------------------------------------------C....................	22	1	1.00	1	0	0	0	0	0	1
............................................................................ATCAC-AGCAA-----------------------------------------A------------AGCAC---------------------------------CAGCA---GC---------------ACT--------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
......CAAC---------AGCAGTTCCAAG-----------------CACCATCG---------GCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................ATAACAAGCAGCAA---------C---AGCA------------------------------------------AC..............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACGCTCAACACCAGCGAGGAG---GA............................................................................................................	26	1	1.00	1	1	0	0	0	0	0
........AC---------AGCAGTTCCAAG-----------------CACCATCG---------GCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAAC---AGCAGCAG------TT..........................................................................................................................................	19	4	0.50	2	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAAC---AGCAGCAG------TTG.........................................................................................................................................	23	3	0.33	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAG---GAG--------------------------------------------------------------------------------------CAACAGCAGCC..........	18	3	0.33	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GCAGCAGCAACAAC---AGCAGCAG------T...........................................................................................................................................	24	6	0.17	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................GCAACAG---------CAGC---AGCA---G------------------------------------------------------------------------------------------------CAGCA---...........................................................................................................................................................................	21	20	0.10	2	0	0	0	0	2	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAAC---AGCAGC....................................................................................................................................................	20	20	0.10	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAAC---AGCAGCAG------T...........................................................................................................................................	18	19	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................GCA---G------------------------------------------------------------------------------------------------CAGCA---GCAGCAGCAACAAC---AGCA......................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---GCAGCAGCAACAAC---AGCA......................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................GC---TGCAACAG---------CAGC---AGCA---G------------------------------------------------------------------------------------------------CA.................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................AAGCAGCAA---------C---AGCA------------------------------------------ACAG------CAA------CAA..........................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0

droGri2

CAACAACAAC---------GGCAACAACATCAGCTAGGCGACGACAAGCCGTGC----------------------------AACAACCGCACCAACGTCGAACAACGCCAATTAGCGGCGAGGGCGGCGGCAGCAGCAGTC------------------------GCAG------CAGCAGCA---CC---------------A---------------------------------------------------------------------GCAG---------C---AGCA------------------------------------------CTTGCAG---CAG------CAGCAAC------------------------------G---ACAGCAGCATCAG--CAACAG------CAA-CAAA------------------------------------------------------------AACACCA---ACAGCAG------------------------------------------------------CAACAACAA----------------------------------------------------------CAACACCGGCAACAAATAATAACCATAAC---------ATCCG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_5338

x:9976622-9976771 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads