ID:

dsi_5337

 Coordinate:

2r:5879066-5879215 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-21.4 -21.3 -21.3

Flybase annnotation

exon [2r_5878920_5879065_-]; CDS [2r_5878920_5879065_-]; intron [2r_5879066_5879479_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTTTTTCAATTACTTTTTTCGTTGGAAGACGTTTCTAATCAGATAAATATTTGTTCGCATTGTTATAATTTGTTTGACCGCATCTGTACAGTATACCCAACCGTATCCGAATATATCTGGTTGTGATGACGTCTCCGCCATTTGGCAACCATTCAGCTCATTTTGTTCGCCTCACTAATATGAGTTCTATCACCCACAGGCAACCACCGAGTACTTGGCCTTCGCGGCTGTCTCCAAGCTGATCGCAGC
**************************************************..((((((.(((((.(((...(((......)))..))))))))((((......)))).))))))....(((((((((((.((....)).))))..)))))))...(((((((.(((..........))).))))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 GSM343915
embryo
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
.............................................AAATATTTGTTCGCATTGTC......................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................GTACAGTATACCCAACCGT................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................CGGCTGTCTCCAAGCTGATCG.... 21 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................GAGTACTTGGCCTTCGCGGCT.................... 21 0 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................................CTTGGCCTTCGCGGCTGTCTCCAA............ 24 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................CCTTCGCGGCTGTCTCCAAGCTGA....... 24 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................GCTGTCTCCAAGCTGATCGCAGC 23 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................................GCAGCTGTCTCCAAGGTG........ 18 2 7 0.29 2 0 0 0 2 0 0 0
.....................................................................................................................................................................................................................AATTGGTTTTCGCGGCTGTCT................ 21 3 7 0.14 1 0 0 0 1 0 0 0
.......................................................................................................................................................................................AGTTATATAACTCACAGGCA............................................... 20 3 14 0.07 1 0 0 0 0 1 0 0
....................................................................ATTTGTTTGACCGAA....................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1 0
...................TCGTTGAAAGACGGTT....................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

AAAAAAAGTTAATGAAAAAAGCAACCTTCTGCAAAGATTAGTCTATTTATAAACAAGCGTAACAATATTAAACAAACTGGCGTAGACATGTCATATGGGTTGGCATAGGCTTATATAGACCAACACTACTGCAGAGGCGGTAAACCGTTGGTAAGTCGAGTAAAACAAGCGGAGTGATTATACTCAAGATAGTGGGTGTCCGTTGGTGGCTCATGAACCGGAAGCGCCGACAGAGGTTCGACTAGCGTCG
**************************************************..((((((.(((((.(((...(((......)))..))))))))((((......)))).))))))....(((((((((((.((....)).))))..)))))))...(((((((.(((..........))).))))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
.................................................................................................................................................................................................................CTCATGAATCGGAAGC......................... 16 1 2 1.00 2 2 0 0 0 0 0
.................................................................................................................................................................................................................CTCATGAATCGGAAG.......................... 15 1 2 1.00 2 2 0 0 0 0 0
..................................................................................................................................................................................................................TCATGAATCGGAAGCTCCCAC................... 21 3 2 0.50 1 0 1 0 0 0 0
.................................................................................................................................................................................................................CTCATGAATCGGAAGCTCCCAC................... 22 3 2 0.50 1 0 0 1 0 0 0
..............................................................................................................................................AACAGTTGGTAGGTCGAGTAT....................................................................................... 21 3 4 0.25 1 0 0 0 0 1 0
........................................................................................................................................................................................CAAGATAGTTGGTCTCC................................................. 17 2 8 0.25 2 1 0 1 0 0 0
.......................................................................................................................................................................................................CCGTTGGGGGTTCATGAA................................. 18 2 6 0.17 1 0 1 0 0 0 0
.................................................................................................................................................................................................................CTCATGAATCGGAAGCTC....................... 18 2 6 0.17 1 1 0 0 0 0 0
.................................................................................................................................................AGTTGGTAAGTCGAGTAT....................................................................................... 18 2 7 0.14 1 0 0 0 1 0 0
...............................................................................................................................................ACCGTGGGTCAGTCGAGGAA....................................................................................... 20 3 10 0.10 1 0 0 0 1 0 0
................................................................................................................................................................................................................CCTCATGAATCGGAAGCTCC...................... 20 3 11 0.09 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................................GTTCGACTTGCGTCG 15 1 13 0.08 1 0 0 0 1 0 0
..................................................................................................................................................................................................................TCATGAATCGGAAGCTC....................... 17 2 16 0.06 1 1 0 0 0 0 0
..............................GCAAGGGTTAGTCTACTTA......................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................ACAGAGGTTCGACATG..... 16 2 20 0.05 1 0 0 0 0 0 1

Generated: 04/24/2015 at 01:46 AM