ID:

dsi_5316

Coordinate:

3l:7537144-7537293 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-11.27	-11.07	-11.0

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
(TTG)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

TGCAATTCAACAAATACCAACCAATAACCAACAATTCCAACACTTAAACAACAACAACAACCAATGACACCAAAACAACAAATAATAATATCAACAACAACTACAACGCTATATGGCCAATTGGACTGTCTTGTGCTTAAACAAAATGCAAATGCTGCGGAATGCCCTCGAAACGCATCGAAATCGAATCAAAACTCTAGGCGAAGACAATATGCTATCAGATCAACCATACCGCTATTTGACCGTTGAT ************************************************...........(((.((((((((.....((.(((.........................))).)).....))))..)))))))(((...........))).....((((..............))))(((....))).............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR902009 testis	SRR618934 dsim w501 ovaries
............................................................................................................................................................................................TCAAAACTCTAGGCGAAGACAT........................................	22	1	1	1.00	1	0	1	0
...............................................................................................................TATGGCCAATTGGACTGTCTTGTGC..................................................................................................................	25	0	1	1.00	1	1	0	0
...........................................................................................................................GACTGTCTTGAGCTT................................................................................................................	15	1	4	0.25	1	0	0	1
...........................................................ACCATTGACACCAAA................................................................................................................................................................................	15	1	13	0.08	1	1	0	0
................................................................................................................................................................................................AACTCTAAGCGGAGACA.........................................	17	2	15	0.07	1	0	0	1

Anti-sense strand reads

ACGTTAAGTTGTTTATGGTTGGTTATTGGTTGTTAAGGTTGTGAATTTGTTGTTGTTGTTGGTTACTGTGGTTTTGTTGTTTATTATTATAGTTGTTGTTGATGTTGCGATATACCGGTTAACCTGACAGAACACGAATTTGTTTTACGTTTACGACGCCTTACGGGAGCTTTGCGTAGCTTTAGCTTAGTTTTGAGATCCGCTTCTGTTATACGATAGTCTAGTTGGTATGGCGATAAACTGGCAACTA ************************************************...........(((.((((((((.....((.(((.........................))).)).....))))..)))))))(((...........))).....((((..............))))(((....))).............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902008 ovaries	SRR553485 Chicharo_3 day-old ovaries	O001 Testis	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries
.....................GTTTTTGGTTGATAAGGTTGTCA..............................................................................................................................................................................................................	23	3	1	2.00	2	2	0	0	0	0	0	0	0	0
.........................TTGGTTGATAAGGTTGTCAA.............................................................................................................................................................................................................	20	2	1	1.00	1	0	1	0	0	0	0	0	0	0
...........TTTATGGTTGGTTATTGGTTG..........................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0
........TGGTTTATGGTTGGAAATTGGTT...........................................................................................................................................................................................................................	23	3	2	0.50	1	0	0	1	0	0	0	0	0	0
......................TTATTGGCCGTTAAGTTTGTG...............................................................................................................................................................................................................	21	3	12	0.42	5	0	5	0	0	0	0	0	0	0
.......................................................................................GATAGTTGTTGTTGATGTT................................................................................................................................................	19	1	3	0.33	1	0	0	0	1	0	0	0	0	0
.........................TTGGTTGATAAGGTTG.................................................................................................................................................................................................................	16	1	4	0.25	1	0	0	0	0	0	1	0	0	0
.................................................................................TCTTATTATAGTTGTTGT.......................................................................................................................................................	18	1	4	0.25	1	0	0	0	0	1	0	0	0	0
..........................TGGTTGATAAGGTTGTCAAC............................................................................................................................................................................................................	20	3	9	0.22	2	0	0	0	2	0	0	0	0	0
..........................................................................TGTTGTTTAGTAGTATAGT.............................................................................................................................................................	19	2	14	0.21	3	0	0	0	0	0	0	3	0	0
.....................................................................GGTTTTATTGTTTATTAT...................................................................................................................................................................	18	1	5	0.20	1	0	0	0	0	1	0	0	0	0
.........................TTGGTTGATAAGGTTGTCA..............................................................................................................................................................................................................	19	2	5	0.20	1	0	1	0	0	0	0	0	0	0
....................GGTCTTTGGTTGATAAGGTTG.................................................................................................................................................................................................................	21	3	5	0.20	1	0	0	0	0	0	1	0	0	0
..........................................................................TGTTGTTTAGTAGTATAGTT............................................................................................................................................................	20	2	6	0.17	1	0	0	0	0	0	0	1	0	0
...........TTTATGGTTGGTTAGTTGTTGG.........................................................................................................................................................................................................................	22	3	9	0.11	1	0	0	0	0	0	0	0	1	0
....................................GGTTGTGAATTTGTTA......................................................................................................................................................................................................	16	1	11	0.09	1	0	0	0	1	0	0	0	0	0
........................................................................................................ATGCGATCTACGGGTTAAC...............................................................................................................................	19	3	13	0.08	1	0	0	0	0	1	0	0	0	0
.....................GTTATTGGTTGTTAA......................................................................................................................................................................................................................	15	0	15	0.07	1	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................TACGGGAGTTTTGGGTA........................................................................	17	2	19	0.05	1	0	0	0	0	0	0	0	1	0
.................................................TTGTTGTTGTTGGTT..........................................................................................................................................................................................	15	0	20	0.05	1	0	1	0	0	0	0	0	0	0
...........TTTATGGTTGGTTAGTTG.............................................................................................................................................................................................................................	18	2	20	0.05	1	0	0	0	0	0	0	0	1	0
........................ATAGGTTGTTAAGGT...................................................................................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	0	0	1
................................................................................................................................................................................................TTAAGTTCCGCTTTTGTTATA.....................................	21	3	20	0.05	1	0	1	0	0	0	0	0	0	0
..........................................................................AGTTGTTTTTTATTATAATTGTT.........................................................................................................................................................	23	3	20	0.05	1	0	0	0	0	0	1	0	0	0

Generated: 04/24/2015 at 10:21 AM