ID:

dsi_5300

 Coordinate:

3l:16188427-16188576 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-17.3 -17.2 -17.2

Flybase annnotation

Antisense to five_prime_UTR [3l_16188556_16188588_+]; Antisense to CDS [3l_16188589_16189020_+]; Antisense to exon [3l_16188556_16189293_+]

No Repeatable elements found

Sense Strand Reads

CCTTGCAGAATCAGAATTGGAAGCAATTTGGAGAGCATTTCTTGATTTTTGTTAGTTTCAGGAATTCGGGCCGAATAATCATACTTCACATCATATTGACGATTTTCGAGTGACCAGCTTAAATTATATAATTCATTAAAGTAAATAGTTCACACTAGCTACGCACCTGAGTAGTAAATTTATAAAGGATTAAGGATTAAACGCAGTGTATTTTTCCAGCTTCAGCTGCAGAAGTAATAATATCTAAATA
**************************************************...((((...((.((((((...((((..(((...............)))..))))))))))..))))))((((((.(((.(((((.....(((..((((....))))..))).....))))).)))))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
.................TGGAAGCAATTTGGAGAGCAT.................................................................................................................................................................................................................... 21 0 1 4.00 4 4 0 0 0 0 0 0
............................................................GGAATTCGGGCCGAATAATCA......................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
...............ATTGGAAGCAATTTGGAGAA....................................................................................................................................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0
....................................................TGGTTTCAGGAATTCGGGC................................................................................................................................................................................... 19 1 1 2.00 2 2 0 0 0 0 0 0
..TTGCAGAATCAGAATTGGAAG................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
..................................................CGTAGTTTCAGGAATTCGGGC................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
................................................................TTCGGGCCGAATAATCATATA..................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
................TTGGAAGCAATTTGGAGAGCAT.................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
...................................................GTAGTTTCAGGAATTCGGGCC.................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................AAGGATTAAACGCAATGTATT...................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................AGGATTAAGGATTAAACG............................................... 18 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................CAATGTATTTTTCCAGCTTCA.......................... 21 1 1 1.00 1 1 0 0 0 0 0 0
..TTGCAGAATCGGAATTGGAAG................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
..................GGAAGCAATTTGGAGAGCATT................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
.................TGGAAGGAATTTGGACAGC...................................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 1 0 0 0 0
.................TGGAAGGAATTTGGACAGCA..................................................................................................................................................................................................................... 20 2 3 0.33 1 0 0 0 1 0 0 0
....................................ATTTCTTGATTTTTGTAAGTA................................................................................................................................................................................................. 21 2 4 0.25 1 0 0 1 0 0 0 0
...............AGTGGAAGGAATTTGGACAGC...................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0
..............................................TTTTGTTAGTTTTAGGAA.......................................................................................................................................................................................... 18 1 5 0.20 1 0 0 0 0 1 0 0
.......................................................................................................................................................................................AAAGGAATAAGGACTAAATGC.............................................. 21 3 5 0.20 1 0 0 0 0 0 1 0
.................TGGAAGGAATTTGGACAGCG..................................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 1 0 0 0
......................................................................................................TTTTCGTGTGACACGCTTAA................................................................................................................................ 20 3 9 0.11 1 0 0 0 0 0 0 1
..............................................TTTTGTTGGTTTCAGGAC.......................................................................................................................................................................................... 18 2 11 0.09 1 0 0 0 0 0 1 0
............................................TTTTTTGTTAGTTTTAGGAA.......................................................................................................................................................................................... 20 2 19 0.05 1 0 0 0 0 1 0 0
.............................................TTTTTGTTAGTTTTAGGAAA......................................................................................................................................................................................... 20 2 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

#######################################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGAACGTCTTAGTCTTAACCTTCGTTAAACCTCTCGTAAAGAACTAAAAACAATCAAAGTCCTTAAGCCCGGCTTATTAGTATGAAGTGTAGTATAACTGCTAAAAGCTCACTGGTCGAATTTAATATATTAAGTAATTTCATTTATCAAGTGTGATCGATGCGTGGACTCATCATTTAAATATTTCCTAATTCCTAATTTGCGTCACATAAAAAGGTCGAAGTCGACGTCTTCATTATTATAGATTTAT
**************************************************...((((...((.((((((...((((..(((...............)))..))))))))))..))))))((((((.(((.(((((.....(((..((((....))))..))).....))))).)))))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553488
RT_0-2 hours eggs
 M023
head
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
..................................................................GCCCGGCTTATTAGTATGA..................................................................................................................................................................... 19 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0
....................................................................CCGGCTTATTAGTATGAAGTG................................................................................................................................................................. 21 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0
...........................................................................................GTATAACTGCTAAAAGCTCAC.......................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
GGAACGTCTTAGTCTTAACCT..................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................................................AAGCCCGGCTTATTAGTATGAAGTGT................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................GCCCGGCTTATTAGTATGAAG................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.......................................................................GCTTATTAGTATGAAGTG................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................GCCCGGCTTATTAGTATG...................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................................................................TAGTATGAAGTGTAATATAAGT....................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................CGGCTTATTAGTATGAAGTGTAGT............................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
..................................................CAATCAAAGTCCTTAAGCCCG................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1
................................................................AAGCCCGGCTTATTAGTATGA..................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..................................................CAATCAAAGTCCTTAAGCCCGGC................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................TTAGTATGAAGTGTAATAT........................................................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................GTAAAGAACTAAAAACAA..................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................ACTGCTAAAAGCTCACTGGTCGAAT................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TCACATAAAAAGGTCGAAGTCGACGT.................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
......TCTTAGTCTTAACCTTCG.................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................CCTTCGTTAAACCTCTCGTAAA.................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................AGTATAACTGCTAAAAGCTC............................................................................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................................................................CTAGTATGAAGTGTAATAT........................................................................................................................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.....................................................TCAAAGTCCTTAAGC...................................................................................................................................................................................... 15 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0
............................................TGAAAACAATCAAAGT.............................................................................................................................................................................................. 16 1 12 0.17 2 0 1 0 0 0 0 0 1 0 0
....................................................................CCGGCCTAGTGGTATGAAG................................................................................................................................................................... 19 3 9 0.11 1 0 0 1 0 0 0 0 0 0 0
..................................................................CCTCGGCTTACTAGTATGA..................................................................................................................................................................... 19 3 9 0.11 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................AATCTCACTGGTTGAATT................................................................................................................................ 18 2 16 0.06 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................AGTGGACGGCTTCGTTATT.......... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................TGGCTGCGTGGAGTCATC............................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................AGTGTGCTCAATGCGT..................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.........................................................................CTATTAGGTTGAAGTGTAG.............................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0

Generated: 04/24/2015 at 02:49 AM