ID:

dsi_53

 Coordinate:

2r:727258-727343 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.4 -13.2 -13.1

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
TRANSIB2DNACMC-Transib-
mature
  1. 2l:22072416-22072440 -
  2. 2l:23141712-23141736 -
  3. 2r:475064-475088 +
  4. dsi_53  2r:727319-727343 +
  5. 2r:1844063-1844087 -
  6. 2r:2669833-2669857 -
  7. 3l:19622698-19622722 -
  8. 3l:23028324-23028348 +
  9. 3l:23593863-23593887 +
  10. 3l:23706993-23707017 +
  11. x:20363364-20363388 +
  12. x:20474680-20474704 +
  13. x:20489112-20489136 -
  14. node_32722:1496-1520 +
  15. node_52464:2492-2516 -
  16. node_5738:2197-2221 -
  17. node_111346:7769-7793 +
  18. node_25117:418-442 +
  19. node_12191:2280-2304 +
  20. dsi_32252  node_67082:144-168 -
  21. 2r:884894-884918 -
  22. 3l:23090108-23090132 -
  23. node_22030:571-595 -
  24. node_100746:1445-1469 -
star
  1. 2l:22072476-22072501 -
  2. dsi_53  2r:727258-727283 +

Sense Strand Reads

CTTCTCTCAATCAGCTGTTTAACACCTTTAAATGCTCATAAAAAGATTTAGTCAAGCTTTCGATCAATTTTGGGCTTTATTTATATGATCAATTTTCTATTAGAAAATAATTGCTAAAGGACGATATATTGACATAGAAATTTAGACTTTATGTAAAAAATAAAAAACGAATTCTGGACCATAGTG
***********************************......(((..(((((((((....(((.((..((((((...((((((...((((.........))))..))))))...)))))))))))....))))).))))..)))........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 O001
Testis
 M053
female body
 GSM343915
embryo
 O002
Head
 M024
male body
...............................................................................................................TGCTAAAGGACGATATATTGACATAGAAA.............................................. 29 0 2 201.00 402 236 116 38 0 11 0 0 1 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTGACATAGA................................................ 27 0 2 98.50 197 83 27 35 24 20 1 1 3 0 2 1 0 0
...............................................................................................................TGCTAAAGGACGATATATTGACATAG................................................. 26 0 2 32.50 65 19 11 15 9 7 0 2 2 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTGACATA.................................................. 25 0 20 25.45 509 0 162 0 191 84 27 7 28 0 8 0 0 2
...............................................................................................................TGCTAAAGGACGATATATTGACATAGAA............................................... 28 0 2 18.50 37 14 7 1 8 5 0 0 1 0 1 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTGACAT................................................... 24 0 20 15.40 308 26 53 83 122 20 4 0 0 0 0 0 0 0
................................................TAGTCAAGCTTTCGATCAATTTTGGG................................................................................................................ 26 0 2 14.50 29 4 7 15 0 3 0 0 0 0 0 0 0 0
..................................................GTCAAGCTTTCGATCAATTTTGGGCT.............................................................................................................. 26 0 2 13.00 26 0 0 0 0 0 24 1 0 0 0 0 0 1
................................................TAGTCAAGCTTTCGATCAATTTTGG................................................................................................................. 25 0 2 12.00 24 2 7 12 0 3 0 0 0 0 0 0 0 0
................................................TAGTCAAGCTTTCGATCAATTTTGGGC............................................................................................................... 27 0 2 11.50 23 2 14 4 0 3 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATT........................................................ 19 0 20 6.10 122 2 0 3 0 0 0 5 0 84 0 0 28 0
..................................................GTCAAGCTTTCGATCAATTTTGGGC............................................................................................................... 25 0 2 5.50 11 0 0 0 0 0 7 1 0 0 0 3 0 0
.................................................................................TATATGATCAATTTTCTATTAGAAAA............................................................................... 26 0 20 5.40 108 25 21 29 0 33 0 0 0 0 0 0 0 0
..................................................GTCAAGCTTTCGATCAATTTTGGGCC.............................................................................................................. 26 1 2 3.50 7 0 0 0 0 0 7 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTGACA.................................................... 23 0 20 2.75 55 8 5 8 19 1 0 3 10 0 1 0 0 0
..............................................................................ATTTATATGATCAATTTTCTA....................................................................................... 21 0 20 2.55 51 0 0 0 0 0 0 0 0 51 0 0 0 0
...............................................................................................................TTCTAAAGGACGATATATTGACATAGAAA.............................................. 29 1 2 2.00 4 2 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTGACATAGAAAT............................................. 30 0 2 2.00 4 1 3 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTGACATAGAAAA............................................. 30 1 2 2.00 4 2 1 1 0 0 0 0 0 0 0 0 0 0
.TTCTCTCAATCAGCTGTTTAACAC................................................................................................................................................................. 24 0 20 1.70 34 8 8 13 0 4 1 0 0 0 0 0 0 0
...............................................TTAGTCAAGCTTTCGATCAATTTTGGG................................................................................................................ 27 0 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................GGCTAAAGGACGATATATTGACATAGAAA.............................................. 29 1 2 1.50 3 2 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................TTTCGATCAATTTTGGGCTTTATT......................................................................................................... 24 0 2 1.50 3 0 1 0 0 0 0 0 0 0 2 0 0 0
...............................................................................................................TGCTAAAGGACGATATAT......................................................... 18 0 20 1.50 30 1 0 0 0 0 0 1 0 28 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTGACATAGAAATT............................................ 31 0 2 1.50 3 0 3 0 0 0 0 0 0 0 0 0 0 0
..................................................GTCAAGCTTTCGATC......................................................................................................................... 15 0 2 1.50 3 0 0 0 0 0 0 3 0 0 0 0 0 0
................................................................................TTATATGATCAATTTTCTATTAGAAAA............................................................................... 27 0 20 1.30 26 10 4 5 0 7 0 0 0 0 0 0 0 0
...........................................................................................................TAATTGCTAAAGGACGATATATTGACA.................................................... 27 0 20 1.20 24 2 4 1 9 3 0 2 0 0 3 0 0 0
............................................................................................................................................TTTAGACTTTATGTAAAAAATAAAAA.................... 26 0 2 1.00 2 0 0 1 0 1 0 0 0 0 0 0 0 0
..................TTAACACCTTTAAATGCTCATAAAAAGA............................................................................................................................................ 28 0 2 1.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................TTAGTCAAGCTTTCGATCAATTTTGGGC............................................................................................................... 28 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
......TCAATCAGCTGTTTAACACCTTTAAA.......................................................................................................................................................... 26 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTCAAGCTTTCGATCAATTTTGGG................................................................................................................ 24 0 2 1.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0
..................................................GTCAAGCTTTCGATCAATTTTGGGCTTT............................................................................................................ 28 0 2 1.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0
..................................................GTCAAGCTTTCGATCAATTTTGGGCG.............................................................................................................. 26 1 2 1.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTGACATAGAAT.............................................. 29 1 3 1.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TAAAGGACGATATATTGACATAGAAATT............................................ 28 0 2 1.00 2 0 0 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................TTGCTAAAGGACGATATATTGACATAGA................................................ 28 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TTCTATTAGAAAATAATTGCTAAAGGA................................................................. 27 0 20 0.70 14 2 2 6 0 4 0 0 0 0 0 0 0 0
.................................................................................TATATGATCAATTTTCTATAAGAAAA............................................................................... 26 1 20 0.65 13 5 3 3 0 2 0 0 0 0 0 0 0 0
...............................................................................TTTATATGATCAATTTTCTATTAGAAAA............................................................................... 28 0 20 0.60 12 5 3 2 0 2 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATA.......................................................... 17 0 20 0.60 12 0 0 0 0 0 0 12 0 0 0 0 0 0
.............................................................................TATTTATATGATCAATTTTCTATTAGAAAA............................................................................... 30 0 19 0.53 10 2 5 2 0 1 0 0 0 0 0 0 0 0
.............................................................................TATTTATATGATCAATTTTCTATTAGA.................................................................................. 27 0 19 0.53 10 5 1 2 0 2 0 0 0 0 0 0 0 0
................................................................................................................GCTAAAGGACGATATATTGACATAGA................................................ 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................GCTAAAGGACGATATATTGACATAGAAA.............................................. 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATAGATTGACATAGA................................................ 27 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TCAAGCTTTCGATCAATTTTGGG................................................................................................................ 23 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................TCTATTAGAAAATAATTGCTAAAGGA................................................................. 26 0 20 0.50 10 0 1 6 0 3 0 0 0 0 0 0 0 0
............................................................................................................................................TTTAGACTTTATGTAAAAAATAAAA..................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TAATTGCTAAAGGACGATATATTG....................................................... 24 0 20 0.50 10 0 0 0 2 0 0 3 0 0 5 0 0 0
..................................................GTCAAGCTTTCGATCAATTTTTGGC............................................................................................................... 25 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................TGCTAAAGGACGATATAATGACATAGA................................................ 27 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TAAAAAACGAATTCTGGACCATAGTG 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.TTCTCTCAATCAGCTGTTTAACACCTT.............................................................................................................................................................. 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TTTAGACTTTATGTAAAAAAATAAAA.................... 26 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......CAATCAGCTGTTTAACACCTTTAAA.......................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTGACATAGT................................................ 27 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATACTGACATAGA................................................ 27 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......TCAATCAGCTGTTTAACACCTTTAAATGC....................................................................................................................................................... 29 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTGACATAT................................................. 26 1 20 0.50 10 0 0 1 2 1 0 0 6 0 0 0 0 0
............................................................................................................................................TTTAGACTTTATGTAAAAAATAAAAAA................... 27 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................GTCAAGCTTTCGATCAATTTTGGGCTTTA........................................................................................................... 29 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................TAGTCAAGCTTTCGATCAATTTT................................................................................................................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.TTCTCTCAATCAGCTGTTTAACACC................................................................................................................................................................ 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTGACATAGTAA.............................................. 29 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................AGCTAAAGGACGATATATTGACATAGAAA.............................................. 29 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGAAATATTGACATAGAAA.............................................. 29 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TTGCTAAAGGACGATATATTGACATAGAA............................................... 29 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................TTAGTCAAGCTTTCGATCAATTTTGG................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................TAGTCAATCTTTCGATCAATTTTGGGC............................................................................................................... 27 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTGATATAGAAA.............................................. 29 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................TAAAAAGATTTAGTCAAGCTTTCGA........................................................................................................................... 25 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................TAGTCAAGCTTTCGATCAATGTTG.................................................................................................................. 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................TATCCTTTAAATGCTCATAAAAAGA............................................................................................................................................ 25 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTCAAGCTTTCGATCAATTTTGGGCTT............................................................................................................. 27 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....TCTCAATCAGCTGTTTAACACC................................................................................................................................................................ 22 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................TAGTCAAGCTTTCGATCAATTTTGGGCT.............................................................................................................. 28 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................TTAGTCAAGCTTTCGATCAATTTT................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TATATTGACATAGAAATTTAGACTTTA................................... 27 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................TTTCGATCAATTTTGGG................................................................................................................ 17 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................CAAGCTTTCGATCAATTTTGGGC............................................................................................................... 23 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0
............................TAAATGCTCATAAAAAGATTTAGTCAAGCT................................................................................................................................ 30 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTATAGGACGATATATTGACAT................................................... 24 1 20 0.40 8 0 0 0 0 0 0 0 8 0 0 0 0 0
...................................................................................TATGATCAATTTTCTATTAGAAAATAAT........................................................................... 28 0 20 0.40 8 2 4 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................TTTCTATTAGAAAATAATTGCTAAAGGA................................................................. 28 0 20 0.35 7 0 0 5 0 2 0 0 0 0 0 0 0 0
.............................................................................................................................................TCAGACTTTATGTAAAA............................ 17 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.TTCTCTTAATCAGCTGTTTAACACC................................................................................................................................................................ 25 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTGACATAGATT.............................................. 29 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TATATGATCAATTTTCTATTAGAAAATAAT........................................................................... 30 0 20 0.30 6 3 3 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TTGCTAAAGGACGATATATTGACATA.................................................. 26 0 20 0.30 6 1 0 0 3 0 0 1 0 0 1 0 0 0
TTTCTCTTAATCAGCTGTTTAACACC................................................................................................................................................................ 26 2 7 0.29 2 0 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................TATTAGAAAATAATTGCTAAAGGACGA.............................................................. 27 0 20 0.25 5 1 0 3 0 1 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGATGATATATTGACATAGAAA.............................................. 29 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATA............................................................ 15 0 20 0.25 5 0 0 0 0 0 0 5 0 0 0 0 0 0
....................................................................................................TAGAAAATAATTGCTAAAGGACGATA............................................................ 26 0 20 0.25 5 1 1 1 0 1 0 1 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTAACAT................................................... 24 1 20 0.25 5 0 0 0 0 0 0 0 5 0 0 0 0 0
CTTCTCTCAATCAGCTGTTTAACAC................................................................................................................................................................. 25 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TATATGATCAATTTTCTATTAGAAAATA............................................................................. 28 0 20 0.25 5 2 0 2 0 1 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAGAGGACGATATATTGACATAG................................................. 26 1 8 0.25 2 0 0 0 0 0 0 0 2 0 0 0 0 0
.............................................................................TATTTATATGATCAATTTTCTATTAGAAA................................................................................ 29 0 19 0.21 4 1 0 1 0 2 0 0 0 0 0 0 0 0
...............................................................................................................TGCTATAGGACGATATATTGACATA.................................................. 25 1 20 0.20 4 0 0 0 0 0 0 0 4 0 0 0 0 0
...................................................................................TATGATCAATTTTCTATTAGAAAATA............................................................................. 26 0 20 0.20 4 1 1 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTGAGAT................................................... 24 1 20 0.20 4 4 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTAACATA.................................................. 25 1 20 0.20 4 0 0 1 0 0 0 0 3 0 0 0 0 0
...........................................................................................................TAATTGCTAAAGGACGATATATT........................................................ 23 0 20 0.20 4 2 0 0 0 0 1 1 0 0 0 0 0 0
...........................................................................................................TAATTGCTAAAGGACGATATATTGA...................................................... 25 0 20 0.20 4 0 0 0 2 0 0 0 2 0 0 0 0 0
.................................................................................TATATGATCAATTTTCTATTAGAAAAT.............................................................................. 27 0 20 0.20 4 0 0 0 0 4 0 0 0 0 0 0 0 0
...........................................................................TTTATTTATATGATCAATTTTCTAT...................................................................................... 25 0 20 0.20 4 1 0 2 0 1 0 0 0 0 0 0 0 0
...............................................................................................................TGCTTAAGGACGATATATTGACATAGA................................................ 27 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATAT........................................................... 16 0 20 0.20 4 0 0 0 0 0 0 4 0 0 0 0 0 0
..............................................................................................................TTGCTAAAGGACGATATATTGACA.................................................... 24 0 20 0.20 4 0 0 2 2 0 0 0 0 0 0 0 0 0
...........................................................................................................TAATTGCTAAAGGACGATATATTGAC..................................................... 26 0 20 0.20 4 0 0 0 0 0 2 2 0 0 0 0 0 0
...........................................................................................................TAATTGCTAAAGGACGAT............................................................. 18 0 20 0.15 3 0 0 0 0 0 0 3 0 0 0 0 0 0
...........................................................................................................TAATTGCTAAAGGACGATATA.......................................................... 21 0 20 0.15 3 0 0 0 0 0 0 2 1 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATAAAA......................................................... 18 2 20 0.15 3 2 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................TATTAGAAAATAATTGCTAAAGGACGATA............................................................ 29 0 20 0.15 3 1 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ATTGCTAAAGGACGATATATTGACA.................................................... 25 0 20 0.15 3 0 0 1 2 0 0 0 0 0 0 0 0 0
...............................................................................................TCTATTAGAAAATAATTGCTAAAGG.................................................................. 25 0 20 0.15 3 0 0 2 0 1 0 0 0 0 0 0 0 0
...............................................................................................TCTATAAGAAAATAATTGCTAAAGGA................................................................. 26 1 20 0.15 3 1 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................ATATGATCAATTTTCTATTAGAAAA............................................................................... 25 0 20 0.15 3 0 2 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TAATTGCTAAAGGACGATATAT......................................................... 22 0 20 0.15 3 0 0 0 0 0 0 0 3 0 0 0 0 0
.......................................................................................................................................................................CGAATTCTGGACCATAGTG 19 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TATGATCAATTTTCTATAAGAAAA............................................................................... 24 1 20 0.15 3 2 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................ATTTATATGATCAATTTTCTATTAGAAAA............................................................................... 29 0 19 0.11 2 0 0 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGAGGATATATTGACATA.................................................. 25 1 20 0.10 2 0 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................TTTCTATAAGAAAATAATTGCTAAAGGA................................................................. 28 1 20 0.10 2 0 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................TAATTGCTAAAGGACGATAT........................................................... 20 0 20 0.10 2 0 0 0 0 0 0 1 1 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTG....................................................... 20 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0
............................................................................TTATTTATATGATCAATTTTCTAT...................................................................................... 24 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTGAC..................................................... 22 0 20 0.10 2 0 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................TAATTGCTAAAGGACGATATATTGATA.................................................... 27 1 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0 0
........................................................................................................AAATAATTGCTAAAGGACGATATATT........................................................ 26 0 20 0.10 2 0 0 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................TATTAGAAAATAATTGCTAAAGGA................................................................. 24 0 20 0.10 2 0 0 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................TCTATTAGAAAATAATTGCTAAAGGACGA.............................................................. 29 0 20 0.10 2 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................TTATATGATCAATTTTCTATTAGA.................................................................................. 24 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATAAATTGACATA.................................................. 25 1 20 0.10 2 0 0 0 0 1 0 0 1 0 0 0 0 0
....TCTCAATCAGCTGTTTAACAC................................................................................................................................................................. 21 0 20 0.10 2 0 1 1 0 0 0 0 0 0 0 0 0 0
......TCAATCAGCTGTTTAACA.................................................................................................................................................................. 18 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTGA...................................................... 21 0 20 0.10 2 0 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................TATTTATATGATCAATTTTCTATAAGA.................................................................................. 27 1 20 0.10 2 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TAAAGGACGATATATTGACATA.................................................. 22 0 20 0.10 2 0 0 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................ATTGCTAAAGGACGATATATTGACATA.................................................. 27 0 20 0.10 2 0 0 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................ATTTTCTATTAGAAAA............................................................................... 16 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0
.................................................................................TATATGATCAATTTTCTATTAGAAA................................................................................ 25 0 20 0.10 2 0 0 1 0 1 0 0 0 0 0 0 0 0
.................................................................................TATATGATCAATTTTCTATTAGAAAAA.............................................................................. 27 1 20 0.10 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.TTCTCTCAATCAGCTGTTTAAC................................................................................................................................................................... 22 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0
................................................................................TTATATGATCAATTTTCTATTAGAAAATA............................................................................. 29 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TTAGAAAATAATTGCTAAAGGACGATA............................................................ 27 0 20 0.10 2 0 0 0 0 1 0 0 0 0 1 0 0 0
........................................................................................................AAATAATTGCTAAAGGACGATATAT......................................................... 25 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACAATATATTGACATAGA................................................ 27 1 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TTTAGTCTTTATTTAAAAAA.......................... 20 2 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.TTCTCTCAATCAGCTGTTTAACACGT............................................................................................................................................................... 26 1 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................ATTTATATGATCAATTTTCTATTAGC.................................................................................. 26 1 19 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................TTTATTTATATGATCAATTTTCTATTAGAA................................................................................. 30 0 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................TTATTTATATGATCAATTTTCTATTAGAAA................................................................................ 30 0 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TATTTATATGATCAATTTTCTATTAGT.................................................................................. 27 1 19 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................TATTTATATGATCAATTTTCTATTAGAAT................................................................................ 29 1 19 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................TATTTATATGATCAATTTTCTATT..................................................................................... 24 0 19 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................TTTATTTATATGATCAATTTTCTATTAGA.................................................................................. 29 0 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TATTTATATGATCAATTTTCTATTAGAA................................................................................. 28 0 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TATATGATCAATTTTCTATTAGAAAATAATT.......................................................................... 31 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTC....................................................... 20 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................AAACGAATTCTGGACCATAGT. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................................AGTTGCTAAAGGACGATATATTGACA.................................................... 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................TATTAGAAAATAATTG......................................................................... 16 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..TCTCTCAATCAGCTGTT....................................................................................................................................................................... 17 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................TGCTATAGGACGATATAT......................................................... 18 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................AATATGATCAATTTTCTATTAGAAAA............................................................................... 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TAAAGGACGATATATTGACAT................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.TTCTCTCAATCAGCTGT........................................................................................................................................................................ 17 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................TGATCAATTTTCTATTAGA.................................................................................. 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................AAAGGACGATATATTGAC..................................................... 18 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.......CAATCAGCTGTTTAACAC................................................................................................................................................................. 18 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................ATTAATTGCTAAAGG.................................................................. 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TATAAGAAAATAATTGCTAAAGGACGATA............................................................ 29 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TAATTGCTAAAGGACG............................................................... 16 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................TATTTATATGATCAATTTTCTAT...................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AGGACGATATATTGACATA.................................................. 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATCTATTGACATA.................................................. 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................TTTTCTATTAGAAAATAATTGCTAAAGGAC................................................................ 30 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................TATATGGTCAATTTTCTATTAGAAAA............................................................................... 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TTCTATTAGAAAATAAT........................................................................... 17 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................TTCTAAAGGACGATATATTGACATA.................................................. 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AATTGCTAAAGGACGAT............................................................. 17 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTGATAT................................................... 24 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................TATATGATCAATTTTCTATTAGAAAATAAA........................................................................... 30 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATACATTGACATA.................................................. 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TAATTGCTAAAGGACGATA............................................................ 19 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................CGCTAAAGGACGATATATTGACATA.................................................. 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATCTATTGACAT................................................... 24 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................TTGGGCTTTGTTTATATC................................................................................................... 18 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGATAAAGGACGATATATTGACATA.................................................. 25 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................TCTTTATATGATCAATTTTCTATTAGAAAA............................................................................... 30 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ATTGCGAAAGGACGAGATATTGACATA.................................................. 27 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................TTTATATGATCAATTTTCTATAAGA.................................................................................. 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TAATTTCTAAAGGACGATATATTGA...................................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................TTGCTAAAGGACGATATATTAACA.................................................... 24 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................TTTATATGATCAATTTTCTATTAGAAAAT.............................................................................. 29 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TAGAAAATAATTGCTAAAGGACGATATATT........................................................ 30 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................AAACGAATTCTGGACCATAGTG 22 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................GAAAATAATTGCTAAAGGACGATATAT......................................................... 27 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................TATTAGAAAATAATTGCTAAAGGACGAT............................................................. 28 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTGACATATT................................................ 27 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................AAATAATTGCTAAAGGACGAT............................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................AGAAAATAATTGCTAAAGGACGATATA.......................................................... 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGCCGATATATTGACA.................................................... 23 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................TACTAAAGGACGATATATTGACATA.................................................. 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGAAGATATATTGACAT................................................... 24 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TTTATGATCAATTTTCTATTAGAAAA............................................................................... 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTGACATT.................................................. 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAGGACGATATATTGA...................................................... 16 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.....CTCAAGCAACTGTTTAACA.................................................................................................................................................................. 19 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TCCTAAAGGACGATATATTGACAT................................................... 24 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................TATAAGAAAATAATTGCTAAAGGACGA.............................................................. 27 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CGAATTCTGGACCATAGT. 18 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TAGAAAATAATTGCTAAAGGACGATATA.......................................................... 28 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................ACATAGAAATTTAGAA....................................... 16 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.TTCTCTCAATCAGCTGTA....................................................................................................................................................................... 18 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................ATTGCTAAAGGACGATATATTGAC..................................................... 24 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTGACACA.................................................. 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.TTCTCTCAATCAGCT.......................................................................................................................................................................... 15 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................TTATATGATCAATTTTCTATTAGAATT............................................................................... 27 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TTTTCTATTAGAAAATAATTGCTAAAGG.................................................................. 28 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................TACTAAAGGACGATATA.......................................................... 17 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TAAAGGACGATATATT........................................................ 16 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................TTTGCTAAAGGACGATATATTGACAT................................................... 26 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................TAATTGCTAAAGGACGA.............................................................. 17 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................AAATAATTGCTAAAGAAC................................................................ 18 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................TTATATGATCAATTTTCTATTAGAAA................................................................................ 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTGAGA.................................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TTTTCTATTAGAAAATAATTGCTAAAGGA................................................................. 29 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................TATATGATCAATTTTCTATTAGAAAATAA............................................................................ 29 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TATGATCAATTTTCTATTAGAAAATAA............................................................................ 27 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATAAA.......................................................... 17 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..TTTCTCAATCAGCTGTTTAACAC................................................................................................................................................................. 23 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TTACTAAAGGACGATATATTGACA.................................................... 24 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................TTATATGATCAATTTTCTATTAGAAAATAAT........................................................................... 31 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TATGATCAATTTTTTATT..................................................................................... 18 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................ATAATTGCTAAAGGACGATATATT........................................................ 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TTGCTATAGGACGATATATTGACAT................................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................AAAGGACGATATATTGACA.................................................... 19 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................ATTAGAAAATAATTGCTAAAGGACGA.............................................................. 26 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................TTAGAAAATAATTGCTAAAGGACGA.............................................................. 25 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTAAAGGACGATATATTGACATATA................................................ 27 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........AATCAGCTGTTTAACA.................................................................................................................................................................. 16 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................TTTATATGATCAATTTTCTATTAGAAAAA.............................................................................. 29 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ACGACGATATATTGACAT................................................... 18 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................ATTGCTAAAGGACGATATATT........................................................ 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................TAATTGCTAAAGGACGATATATTGACT.................................................... 27 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

GAAGAGAGTTAGTCGACAAATTGTGGAAATTTACGAGTATTTTTCTAAATCAGTTCGAAAGCTAGTTAAAACCCGAAATAAATATACTAGTTAAAAGATAATCTTTTATTAACGATTTCCTGCTATATAACTGTATCTTTAAATCTGAAATACATTTTTTATTTTTTGCTTAAGACCTGGTATCAC
***********************************......(((..(((((((((....(((.((..((((((...((((((...((((.........))))..))))))...)))))))))))....))))).))))..)))........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 M053
female body
 M025
embryo
 SRR902009
testis
..................................................................................................................................................................TTTTTGCTTAAGACCT........ 16 0 20 3.25 65 0 0 65 0 0 0 0 0 0
..........................................................AAGCTAGTTAAAACCCGAAATAAAT....................................................................................................... 25 0 2 3.00 6 3 1 0 1 1 0 0 0 0
..........................................................AAGCTAGTTAAAACCCGAAATAAATAT..................................................................................................... 27 0 2 2.50 5 3 1 0 1 0 0 0 0 0
.......................................................CGAAAGCTAGTTAAAACCCGAAATAA......................................................................................................... 26 0 2 2.00 4 3 0 1 0 0 0 0 0 0
..AGAGAGTTAGTCGACAAATTGTGGAAAT............................................................................................................................................................ 28 0 2 1.50 3 2 0 0 0 1 0 0 0 0
...............................................................................................AGATAATCTTTTATTAACGATTTCCT................................................................. 26 0 20 1.20 24 4 9 0 11 0 0 0 0 0
...............................................................................................AGATATTCTTTTATTAACGATTTCCT................................................................. 26 1 20 1.15 23 5 9 0 4 5 0 0 0 0
......................................................TCGAAAGCTAGTTAAAACCCGAAATAA......................................................................................................... 27 0 2 1.00 2 1 0 0 0 0 0 1 0 0
............................................................................................................................................................TTTTATTTTTTGCTTAAGACCT........ 22 0 2 1.00 2 2 0 0 0 0 0 0 0 0
.......................................................CGAAAGCTAGTTAAAACCCGAAATAAAT....................................................................................................... 28 0 2 1.00 2 0 2 0 0 0 0 0 0 0
.....................................................................................................................................................ATACATTTTTTATTTTTTGCTTAAGACG......... 28 1 2 0.50 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................TACATTTTTTATTTTTTGCTTAAGACC......... 27 0 2 0.50 1 0 0 0 1 0 0 0 0 0
...................................AGTATTTTTCTAAATCAGTTCGA................................................................................................................................ 23 0 2 0.50 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................TTAAATACATTTTTTATTTTTTGGCT............... 26 3 2 0.50 1 0 1 0 0 0 0 0 0 0
............................................................................................................................ATATAACTGTATCTTTAAATCTGAAAT................................... 27 0 2 0.50 1 0 0 0 1 0 0 0 0 0
......................................................TCGAAAGCTAGTTAAAACCCGAAATAAAT....................................................................................................... 29 0 2 0.50 1 0 1 0 0 0 0 0 0 0
...............ACAAATTGTGGAAATTTACGAGTATT................................................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
....................................................................................................................TTCCTGCTATATAACTGTATCTTTAAAT.......................................... 28 0 2 0.50 1 0 0 0 1 0 0 0 0 0
......................................................TTTAAAGCTAGTTAAAACCCGAAATA.......................................................................................................... 26 2 2 0.50 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................ATGCTATATAACTGTATCTTTAAAT.......................................... 25 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................TTTCTAAATCAGTTCGAAAGCTAG......................................................................................................................... 24 0 2 0.50 1 0 0 0 0 0 0 1 0 0
.........................................................AAAGCTAGTTAAAACCCGAAATAA......................................................................................................... 24 0 2 0.50 1 0 0 0 1 0 0 0 0 0
............................................CTAAATCAGTTCGAAAGCTAGTTA...................................................................................................................... 24 0 2 0.50 1 0 0 1 0 0 0 0 0 0
...............................................................................................................ACGATTTCCTGCTATATAACTGTATCT................................................ 27 0 2 0.50 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................CATTTTTTGCTTAAGACCTGGTAT... 24 1 2 0.50 1 0 0 0 0 0 1 0 0 0
......................................................TCGAAAGCTAGTTAAA.................................................................................................................... 16 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.............CGACAAATTGTGGAAATTTA......................................................................................................................................................... 20 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.........................................................AAAGCTAGTTAAAACCCGAAATAAAT....................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
........................GGAAATTTACGAGTATTTTTCTAAGT........................................................................................................................................ 26 1 2 0.50 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................TTTTTTATTTTTTGCTTAAGACCT........ 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0
....................................GTATTTTTCTAAATCAGTTCGAAA.............................................................................................................................. 24 0 2 0.50 1 0 0 0 0 0 0 1 0 0
.........TAGTCGACAAATTGTGGAAATTTA......................................................................................................................................................... 24 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................ACATTTTTTATTTTTTGCTTAAGACC......... 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................TAAGCTAGTTAAAACCCGAAATAAAT....................................................................................................... 26 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................TTGCTATATAACTGTATCTTTAAATCT........................................ 27 1 2 0.50 1 0 0 0 0 1 0 0 0 0
........................................................................................................................................................CATTTTTTATTTTTTGCTTAAGACCT........ 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................TTTTTATTTTTTGCTTAAGACCT........ 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................AAGCTAGTTAAAACCCGAAATAAATATACT.................................................................................................. 30 0 2 0.50 1 0 1 0 0 0 0 0 0 0
.............................................TAAATCAGTTCGAAAGCT........................................................................................................................... 18 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.............CGACAAATTGTGGAAATTTACGAGTAT.................................................................................................................................................. 27 0 2 0.50 1 0 0 0 0 1 0 0 0 0
......................................................................................................................................................TACATTTTTTATTTTTTGCTTAAGACCT........ 28 0 2 0.50 1 0 0 0 0 0 1 0 0 0
.........................................TTTCTAAATCAGTTCGAAAGCTAGT........................................................................................................................ 25 0 2 0.50 1 0 0 0 0 1 0 0 0 0
..............GACAAATTGTGGAAATTTACGAGTATT................................................................................................................................................. 27 0 2 0.50 1 0 0 1 0 0 0 0 0 0
...........................................................AGCTAGTTAAAACCCGAAATAAAT....................................................................................................... 24 0 2 0.50 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................ATAACTGTATCTTTAAATCTGAAAT................................... 25 0 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................ATTTTTTATTTTTTGCTTAAGACCT........ 25 0 2 0.50 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................TTTTTTTTTTTTTGCTTAAGACC......... 23 1 10 0.40 4 0 4 0 0 0 0 0 0 0
.AAGAGAGTTAGTCGACGAATTGTGAAAA............................................................................................................................................................. 28 2 4 0.25 1 1 0 0 0 0 0 0 0 0
.................................................TCAGTTCGAGTGCTCGTTAA..................................................................................................................... 20 3 8 0.25 2 0 0 0 0 1 0 0 1 0
..........................................................................................................................................................TTTTTTTTTTTTTGCTTAAGACCT........ 24 1 9 0.11 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................TTTTTTGCTTAAGACCTGGTAT... 22 0 20 0.10 2 0 0 0 0 0 1 0 0 1
..........................................................................................................................................................TTTTATTTTTTTTGCTTAAGACC......... 23 2 10 0.10 1 0 1 0 0 0 0 0 0 0
............................................................................................TTAGGATAATCTTTTATTAACGA....................................................................... 23 3 20 0.10 2 0 0 2 0 0 0 0 0 0
.............................................................................................................TAACGATTTCCTGCTATATAACTGT.................................................... 25 0 20 0.10 2 0 0 0 0 2 0 0 0 0
...............................................................................AAATATACTAGTTAAAAGATAATCTT................................................................................. 26 0 20 0.10 2 1 0 0 1 0 0 0 0 0
......................................................TCGAAAGCTAGTTAC..................................................................................................................... 15 1 17 0.06 1 0 1 0 0 0 0 0 0 0
............................................................................AATAAATATACTAGTTAAAAGATAATCT.................................................................................. 28 0 19 0.05 1 0 0 0 0 0 1 0 0 0
.................................................................................................ATATTCTTTTATTAACGATTTCCT................................................................. 24 1 20 0.05 1 0 0 0 0 1 0 0 0 0
.................................................................................................ATAATCTTTTATTAACGATTTCCT................................................................. 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................TTGCTTAAGACCTGGTAT... 18 0 20 0.05 1 0 0 1 0 0 0 0 0 0
................................................................................................GATATTCTTTTATTAACGCTTTCCT................................................................. 25 2 20 0.05 1 0 0 0 0 0 0 1 0 0
.AAGAGAGTTAGTCGACAAATTGTG................................................................................................................................................................. 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0
...........................................................................................TAAAAGATAATCTTTTATTAACGATT..................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................TGCTGAAGCCCTGGTATC.. 18 2 20 0.05 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................TTCTTGCTTAAGACCT........ 16 1 20 0.05 1 0 0 1 0 0 0 0 0 0
......................................................................................................CTTTTATTAACGATTTCCTGCTATAT.......................................................... 26 0 20 0.05 1 0 0 0 0 1 0 0 0 0
.................................................................................ATATACTAGTTAAAAGATAATCT.................................................................................. 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0
..........................................................................................TTGAAGGATAATCTTTTATTAACGATT..................................................................... 27 2 20 0.05 1 0 0 1 0 0 0 0 0 0
.................................................................................ATATACTAGTTAAAAGATAATCTTT................................................................................ 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0
...............................................................................................AGATAATCTTTTATTAACGATTTCCTG................................................................ 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0
........................................................................................AGTTAAAAGATAATCTTTTATTAACGAT...................................................................... 28 0 20 0.05 1 0 0 0 0 1 0 0 0 0
...............................................................................AAATATACTAGTTAAAAGATAATCTTT................................................................................ 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0
..AGAGAGTTAGTCGAC......................................................................................................................................................................... 15 0 20 0.05 1 0 0 1 0 0 0 0 0 0
.AAGAGAGTTAGTCGACAAAT..................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:727208-727393 + dsi_53 CTTCTCTCAATCAGCTGTT-TAA-----CACCTTTAAATGCTCA---TAAAAAGATTTAGTCAAGCTTTCGATCAATTT-------TGGGCTTTATTTATATGATCAATTTTCTATTAGAA---------AATAATTGCTAAAGGACGA-------TATATTGACATAGAAATTTAGACTTTATGTAAAAAA--TAAAAAACGAATTCTGGACCATAGTG
droSec2 scaffold_6:53228-53415 + CTTCTCTCAATCAGCTGTT---------CACCTTTAAATGCTCA---TAAAAAGATTTAGTCAAGCTTTCGGTCAATTT-TGTT---TTTTTTTATTTATATGATATATTTTCTTTTAGAA---------AATAATTGCTAAAGGACGA-------TATATTGTCATAAAAATGTAGACTTTATGCCAAAAAAAAAAAAAACGAATTCTGGACCATAGTG
dm3 chr3L:14947522-14947716 - ATTCTCTCAATCAGCTGTT-TAAAACTTCAACTTTAAAAGCTCA---TAAAACGATTTAGTGAAGCTTTCGGTCAATTT-TGTTTTTGGTTTTTATTTATATGATCAATTTTCTATTAGAA---------AATAATTGCTAGAGGACGA-------TATATTGACATAAAAATTTAGACTTTATGCCAAAAA----AAAAACGAATTCTGGACCATAGTG
droEre2 scaffold_4929:23421165-23421350 - CTTCTCTCAATCAGCTGTT-TAACACTGCACC-CTAAAAGCTCA---TTAAAAGCTTTAGTAAAGCTTTCGGTCAGTTT-------TGTTTTTTATTTATTTGATCAATTTTCTTTTAAAA---------AATAATTGATAAAGGACGA-------TATATTGACATAAAAATTTTGACTTAATGATAAAAT------AAAAGAATTTTGGACCATAGTG
droYak3 2R:1391276-1391460 - CTTCTCGCCATCA----------CACTGCACTTTTAAAAGTTCA---TAAAAGACTTTAGTAATGGTTTCGGTCAATATTGTTTTTGGTTTTTTATTTATATGATAAATTTTCTTTTAGAA---------AATAATTGATAAAGGACGA-------TATATTGACATAAAAATTTAGACTTAATGACAAAAA------AAACGAATTCTGGACCATAGTG
droEug1 scf7180000409171:53117-53309 - TATTCGGAAATCAGCTGAT-CGCAATCGCACTTTTAAAAGCTCA---CAATAAGCTTTGGTGGCACATTTAAAGCTTTT-AATTAACATTTTTATAATGTATGAAGAATTTACTTTAAGAT---------AAAAATAAGAAAACAACGA-------TATATTAACATAAAAAAATCGACTTTATGCCCAAGA------AAACGGATTCTGGACCATAGTG
droBia1 scf7180000301746:11535-11728 + TATTCGGAAATCAGCTGAT-CGCAATCGCACTTTTAAAAGCTCA---CAATAAGCTTTGGTGGCACATTTAAAGCTTTT-AATTAACATTTTTATAATGTATGAAGAATTTACTTTCAGAT---------AAAAACAAGAAAACAACGA-------TATATTGACATAAAAAAATCGACTTTATGCCAAAAA-----AAAACGGGTTCTGGACCATAGTG
droTak1 scf7180000413066:5988-6178 + TTAGTCCTAAGCAGCTGAT-CGATTGTGTACTTTTGAAAGCTCA---TGAAAAGCGTTAGTGTAGCTTTTAAAGCTTTT-T--TTTAGGTTTGTATATGTATGATCTATTAACTTTAAGAA---------TTTAAAATAAAAAATACAA-------AACATTAACATAAAAATTTCGACTTTATGCCAAAAA------ATCGGCCGCTCGGACCATAGTG
droEle1 scf7180000490871:4485-4679 + TATTCGGAAATCAGCTGAT-CGCAAGCTTTATTTTAAAAAATAT---CAAAAAGACTTGGTGGCGCTTTTAAAGTTTTT-AAAACAAATTTTTATAATGAATGATGAATTTTCTTTAAGAT---------TAAAATAAGAAAACAACGA-------TATATTAACATAGAAAAATCGACTTTATGCCAAAAC----AACAACAGAATCTGGACCATAGTG
droRho1 scf7180000779179:6464-6657 + ATATTCCCAAACAGTTGTTTCGATTGTGTGGCTTGGAAAGCTCA---TAAAAAGCATCAGTGATGCTTTTAAAGCTAAT-TTTTTTAGTTTTGTTTTTGTTTAATGTATTAACTTTAAGAA---------TTTTAAATCAAAAATTCAA-------AACATTAACATAAAAATTTAGTATTTATGCCAAAAA------AATCGACTTCTGGACCATAGTG
droFic1 scf7180000449838:1697-1889 + CTAATCCTAAACAACTGAT-CGATTGCATTCTTTTGAAAGCTCA---TACAAAGCTTCAGTGAAGCTTTTAAAGATTTA-TTATTTAAGTTTTTAGAAGTATGATGTATTAACTTTAAGAA---------TTTAAAACCAAAAATACAA-------AACATTAACATAAAAATTTCGACTTTATGCCAAAAA------ATCCGACTTTTGGACCATAGTG
droKik1 scf7180000301667:7147-7336 - TATTCGGAAATCAGCTGAT-CGCAATCGCACTTTTAAAAGCTCA---CAATAAGCTTTGGTGGCACATTTAAAGCTTTT-AATTAACATTTTTATAATGTATGAAGAATTTACTTTAAGAT---------AAAAATAAGAA-AAAACGA-------TATATTAACATAAAA-AATCGACTTTATGCCAAAA-------AAACGGATTCTGGACCATAGTG
droAna3 scaffold_13045:1274641-1274813 + CCGATCTTGATCAAATTTT-GCA---CAGACCTCTGAAATACGATTCTCAAGAACTTGAACAAAGGAT--------------TTTTTTATTTTTATTTATAAAATAGTTTTTACATAAAAA---------AAAAATTGTTAAAC-------------AAATT-TCGACAAAATTTGAATTTTTTTGCAAAAA------GGTGTCCTAAAAATCCAATTTT
droBip1 scf7180000395882:20566-20758 - TATTCGGAAATCAGCTGAT-CGCAATCGCACTTTTAAAAGCTCA---CAATAAGCTTTGGTGGCACATTTAAAGCTTTT-CATTAACATTTTTATAATGTATGAAGAATTTACTTTAAGAT---------AAAAATAAGAAACCAACGA-------TATATTGACATAAAAAAATCGACTTTATGCCAAAAA------AAACGGGTTCTGGACCATAGTG
dp5 Unknown_singleton_2373:730-920 + TGTCTCACAATCAGCTGAT-TGATTGTTTACTTTCAAAAGCTCG---CAAATAGCTTCAGGGAAGCTTAATA--ATATT-ATTTTTTATTTTTAATATGTATGATGAATTTACTTTGAGAA---------TTTGCAAGAAAAAACGTAA-------TCCATTCACATAAAAATTTCGACTTTATGCCAAAAA------AAACGAATTCTGGACCATAGTG
droPer2 scaffold_52:199860-200051 - TTTCTCACAATCGGCTGAT-CGATTGTTCAATTTCAAAGGCTCG---CAAAAAGCTTTAGGGAAGCTTACTAAT-TTTT-TTTTTTAATTTTTAATATGTGTGATAAATTTACTTTGAGAA---------TTTGTAAGAAAAAACGTAA-------TCCATTCATATAAAAATTTCGACTTTATGCGAAAAA------AAACGAATTCTGGACCATAGTG
droWil2 scf2_1100000004514:345492-345646 + AATTTCTTATA------------------------------------AAAAATGTTTTATTCAAGCTTTGTTTTAATTT-------TTGTATTAATTTATAGGTTTGGTTA-----AACTT---TGTAATTTTAAAGTCAATAATTTAAAAGACTCAATCTTC----------TTAAACTTTCTTTCTAATA----ATAAGGATGATCTCAACCAAAGAG
droVir3 scaffold_13324:76603-76709 + ATTTGGTCAG--------A-CTCAGTGACAATTTT----------------------------------------------------GGGTTTTGTGTCTATTAGAAACTTTTAAATGGATTAC------AATGTATGGTAAAGGTGAA-------CCTGGTTTTTCAAAAATTTAAAATT---------------------------------------
droMoj3 scaffold_6333:6063-6246 - --------AATCAGCTGAT-CGATAGTTCACTTTTAAAAGCTCT---CATAAAGCTTTCGTTTCACTTCTAAAGCTTTT-TATTATCATTTTTATAATGTATGATGAATTTACTTTAAGGC---------AAAAAAAAATTTTTAACGA-------TTCATTAACATCGAAAAATAGACTTTATGCCAAAA-------AAACGAAATCTGGACCATAGTG
droGri2 scaffold_15074:5787554-5787606 + TAATTCACCATT-----------------------------------------------------------------------------------------------------TATTATAA---------AACACTTGCTAAGGTACTT-------AATATTGACACAAA--------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTTCTCTCAATCAGCTGTT-TAA-----CACCTTTAAATGCTCA---TAAAAAGATTTAGTCAAGCTTTCGATCAATTT-------TGGGCTTTATTTATATGATCAATTTTCTATTAGAA---------AATAATTGCTAAAGGACGA-------TATATTGACATAGAAATTTAGACTTTATGTAAAAAA--TAAAAAACGAATTCTGGACCATAGTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................TGCTAAAGGACGA-------TATATTGACATAGAAA................................................292201.0040200000011623638110001000
........................................................................................................................................TGCTAAAGGACGA-------TATATTGACATAGA..................................................27298.501970012002783352011243000
........................................................................................................................................TGCTAAAGGACGA-------TATATTGACATAG...................................................26232.506500000011191572092000
........................................................................................................................................TGCTAAAGGACGA-------TATATTGACATA....................................................252025.45509022780016200847019128000
........................................................................................................................................TGCTAAAGGACGA-------TATATTGACATAGAA.................................................28218.5037000100714150081000
........................................................................................................................................TGCTAAAGGACGA-------TATATTGACAT.....................................................242015.4030800400053268320001220000
.........................................................TAGTCAAGCTTTCGATCAATTT-------TGGG..................................................................................................................................26214.5029000000741530000000
...........................................................GTCAAGCTTTCGATCAATTT-------TGGGCT................................................................................................................................26213.0026012400000001000000
.........................................................TAGTCAAGCTTTCGATCAATTT-------TGG...................................................................................................................................25212.0024000000721230000000
.........................................................TAGTCAAGCTTTCGATCAATTT-------TGGGC.................................................................................................................................27211.5023000000142430000000
........................................................................................................................................TGCTAAAGGACGA-------TATATT..........................................................19206.101220000842802305000000
...........................................................GTCAAGCTTTCGATCAATTT-------TGGGC.................................................................................................................................2525.501100700000001300000
.................................................................................................TATATGATCAATTTTCTATTAGAA---------AA........................................................................................26205.40108000000212529330000000
...........................................................GTCAAGCTTTCGATCAATTT-------TGGGCC................................................................................................................................2623.50700700000000000000
........................................................................................................................................TGCTAAAGGACGA-------TATATTGACA......................................................23202.75550001005881301910000
..............................................................................................ATTTATATGATCAATTTTCTA.........................................................................................................21202.5551000051000000000000
........................................................................................................................................TGCTAAAGGACGA-------TATATTGACATAGAAAT...............................................3022.00400000031000000000
........................................................................................................................................TGCTAAAGGACGA-------TATATTGACATAGAAAA...............................................3022.00400000012100000000
.TTCTCTCAATCAGCTGTT-TAA-----CAC.............................................................................................................................................................................................24201.7034001000881340000000
........................................................TTAGTCAAGCTTTCGATCAATTT-------TGGG..................................................................................................................................2721.50300000003000000000
..................................................................TTTCGATCAATTT-------TGGGCTTTATT...........................................................................................................................2421.50300020010000000000
........................................................................................................................................TGCTAAAGGACGA-------TATAT...........................................................18201.5030000028001001000000
........................................................................................................................................TGCTAAAGGACGA-------TATATTGACATAGAAATT..............................................3121.50300000030000000000
...........................................................GTCAAGCTTTCGATC..................................................................................................................................................1521.50300000000003000000
................................................................................................TTATATGATCAATTTTCTATTAGAA---------AA........................................................................................27201.3026000000410570000000
....................................................................................................................................TAATTGCTAAAGGACGA-------TATATTGACA......................................................27201.202400030042132090000
............................................................................................................................................................................TTTAGACTTTATGTAAAAAA--TAAAAA....................2621.00200000000110000000
..................T-TAA-----CACCTTTAAATGCTCA---TAAAAAGA.....................................................................................................................................................................2821.00200000001010000000
........................................................TTAGTCAAGCTTTCGATCAATTT-------TGGGC.................................................................................................................................2821.00200000002000000000
......TCAATCAGCTGTT-TAA-----CACCTTTAAA......................................................................................................................................................................................2621.00200000002000000000
...........................................................GTCAAGCTTTCGATCAATTT-------TGGG..................................................................................................................................2421.00200000000002000000
...........................................................GTCAAGCTTTCGATCAATTT-------TGGGCTTT..............................................................................................................................2821.00200000000002000000
...........................................................GTCAAGCTTTCGATCAATTT-------TGGGCG................................................................................................................................2621.00200200000000000000
........................................................................................................................................TGCTAAAGGACGA-------TATATTGACATAGAAT................................................2931.00300000021000000000
...........................................................................................................................................TAAAGGACGA-------TATATTGACATAGAAATT..............................................2821.00200000000110000000
.......................................................................................................................................TTGCTAAAGGACGA-------TATATTGACATAGA..................................................2821.00200000002000000000
..............................................................................................................TTCTATTAGAA---------AATAATTGCTAAAGGA..........................................................................27200.701400000022640000000
...............................................................................................TTTATATGATCAATTTTCTATTAGAA---------AA........................................................................................28200.601200000035220000000
........................................................................................................................................TGCTAAAGGACGA-------TATA............................................................17200.6012000000000012000000
.............................................................................................TATTTATATGATCAATTTTCTATTAGAA---------AA........................................................................................30190.531000000052210000000
.............................................................................................TATTTATATGATCAATTTTCTATTAGA....................................................................................................27190.531000000015220000000
.........................................................................................................................................GCTAAAGGACGA-------TATATTGACATAGA..................................................2620.50100000001000000000
.........................................................................................................................................GCTAAAGGACGA-------TATATTGACATAGAAA................................................2820.50100000001000000000
............................................................TCAAGCTTTCGATCAATTT-------TGGG..................................................................................................................................2320.50100010000000000000
...............................................................................................................TCTATTAGAA---------AATAATTGCTAAAGGA..........................................................................26200.501000000010630000000
............................................................................................................................................................................TTTAGACTTTATGTAAAAAA--TAAAA.....................2520.50100000001000000000
....................................................................................................................................TAATTGCTAAAGGACGA-------TATATTG.........................................................24200.501000050000003020000
..................................................................................................................................................................................................TAAAAAACGAATTCTGGACCATAGTG2620.50100000010000000000
.TTCTCTCAATCAGCTGTT-TAA-----CACCTT..........................................................................................................................................................................................2720.50100000001000000000
.......CAATCAGCTGTT-TAA-----CACCTTTAAA......................................................................................................................................................................................2520.50100000001000000000
........................................................................................................................................TGCTAAAGGACGA-------TATATTGACATAGT..................................................2720.50100000001000000000
......TCAATCAGCTGTT-TAA-----CACCTTTAAATGC...................................................................................................................................................................................2920.50100000010000000000
........................................................................................................................................TGCTAAAGGACGA-------TATATTGACATAT...................................................26200.501000000000110026000
............................................................................................................................................................................TTTAGACTTTATGTAAAAAA--TAAAAAA...................2720.50100000000010000000
...........................................................GTCAAGCTTTCGATCAATTT-------TGGGCTTTA.............................................................................................................................2920.50100000000001000000
.........................................................TAGTCAAGCTTTCGATCAATTT-------T.....................................................................................................................................2320.50100000001000000000
.TTCTCTCAATCAGCTGTT-TAA-----CACC............................................................................................................................................................................................2520.50100000001000000000
.......................................................................................................................................TTGCTAAAGGACGA-------TATATTGACATAGAA.................................................2920.50100000000000001000
........................................................TTAGTCAAGCTTTCGATCAATTT-------TGG...................................................................................................................................2620.50100000001000000000
...............................................TAAAAAGATTTAGTCAAGCTTTCGA....................................................................................................................................................2520.50100000000010000000
...........................................................GTCAAGCTTTCGATCAATTT-------TGGGCTT...............................................................................................................................2720.50100000000001000000
....TCTCAATCAGCTGTT-TAA-----CACC............................................................................................................................................................................................2220.50100000100000000000
.........................................................TAGTCAAGCTTTCGATCAATTT-------TGGGCT................................................................................................................................2820.50100000000100000000
........................................................TTAGTCAAGCTTTCGATCAATTT-------T.....................................................................................................................................2420.50100000001000000000
............................................................................................................................................................TATATTGACATAGAAATTTAGACTTTA.....................................2720.50100000000000010000
..................................................................TTTCGATCAATTT-------TGGG..................................................................................................................................1720.50100000000001000000
.............................................................CAAGCTTTCGATCAATTT-------TGGGC.................................................................................................................................2320.50100010000000000000
..................................TAAATGCTCA---TAAAAAGATTTAGTCAAGCT.........................................................................................................................................................3020.50100000010000000000
...................................................................................................TATGATCAATTTTCTATTAGAA---------AATAAT....................................................................................28200.40800000042200000000
.............................................................................................................TTTCTATTAGAA---------AATAATTGCTAAAGGA..........................................................................28200.35700000000520000000
........................................................................................................................................TGCTAAAGGACGA-------TATATTGACATAGATT................................................2930.33100000001000000000
.................................................................................................TATATGATCAATTTTCTATTAGAA---------AATAAT....................................................................................30200.30600000033000000000
.......................................................................................................................................TTGCTAAAGGACGA-------TATATTGACATA....................................................26200.30600010001001030000
.................................................................................................................TATTAGAA---------AATAATTGCTAAAGGACGA-------................................................................27200.25500000001310000000
........................................................................................................................................TGCTAAAGGACGA-------TA..............................................................15200.25500000000005000000
....................................................................................................................TAGAA---------AATAATTGCTAAAGGACGA-------TA..............................................................26200.25500000011111000000
CTTCTCTCAATCAGCTGTT-TAA-----CAC.............................................................................................................................................................................................2540.25100000010000000000
.................................................................................................TATATGATCAATTTTCTATTAGAA---------AATA......................................................................................28200.25500000002210000000
.............................................................................................TATTTATATGATCAATTTTCTATTAGAA---------A.........................................................................................29190.21400000001120000000
...................................................................................................TATGATCAATTTTCTATTAGAA---------AATA......................................................................................26200.20400000011110000000
....................................................................................................................................TAATTGCTAAAGGACGA-------TATATT..........................................................23200.20400100002001000000
....................................................................................................................................TAATTGCTAAAGGACGA-------TATATTGA........................................................25200.20400000000000022000
.................................................................................................TATATGATCAATTTTCTATTAGAA---------AAT.......................................................................................27200.20400000000040000000
...........................................................................................TTTATTTATATGATCAATTTTCTAT........................................................................................................25200.20400000001210000000
........................................................................................................................................TGCTAAAGGACGA-------TAT.............................................................16200.20400000000004000000
.......................................................................................................................................TTGCTAAAGGACGA-------TATATTGACA......................................................24200.20400000000200020000
....................................................................................................................................TAATTGCTAAAGGACGA-------TATATTGAC.......................................................26200.20400200000002000000
....................................................................................................................................TAATTGCTAAAGGACGA-------T...............................................................18200.15300000000003000000
....................................................................................................................................TAATTGCTAAAGGACGA-------TATA............................................................21200.15300000000002001000
.................................................................................................................TATTAGAA---------AATAATTGCTAAAGGACGA-------TA..............................................................29200.15300000011100000000
......................................................................................................................................ATTGCTAAAGGACGA-------TATATTGACA......................................................25200.15300000000100020000
...............................................................................................................TCTATTAGAA---------AATAATTGCTAAAGG...........................................................................25200.15300000000210000000
..................................................................................................ATATGATCAATTTTCTATTAGAA---------AA........................................................................................25200.15300000020100000000
....................................................................................................................................TAATTGCTAAAGGACGA-------TATAT...........................................................22200.15300000000000003000
.........................................................................................................................................................................................................CGAATTCTGGACCATAGTG19200.15300000030000000000
..............................................................................................ATTTATATGATCAATTTTCTATTAGAA---------AA........................................................................................29190.11200000000200000000
....................................................................................................................................TAATTGCTAAAGGACGA-------TAT.............................................................20200.10200000000001001000
........................................................................................................................................TGCTAAAGGACGA-------TATATTG.........................................................20200.10200000000000002000
............................................................................................TTATTTATATGATCAATTTTCTAT........................................................................................................24200.10200000020000000000
........................................................................................................................................TGCTAAAGGACGA-------TATATTGAC.......................................................22200.10200000010001000000
........................................................................................................................A---------AATAATTGCTAAAGGACGA-------TATATT..........................................................26200.10200000000100010000
.................................................................................................................TATTAGAA---------AATAATTGCTAAAGGA..........................................................................24200.10200000000110000000
...............................................................................................................TCTATTAGAA---------AATAATTGCTAAAGGACGA-------................................................................29200.10200000001010000000
................................................................................................TTATATGATCAATTTTCTATTAGA....................................................................................................24200.10200000000020000000
....TCTCAATCAGCTGTT-TAA-----CAC.............................................................................................................................................................................................21200.10200000010100000000
......TCAATCAGCTGTT-TAA-----CA..............................................................................................................................................................................................18200.10200000000002000000
........................................................................................................................................TGCTAAAGGACGA-------TATATTGA........................................................21200.10200000010000010000
...........................................................................................................................................TAAAGGACGA-------TATATTGACATA....................................................22200.10200000000101000000
......................................................................................................................................ATTGCTAAAGGACGA-------TATATTGACATA....................................................27200.10200000000100010000
...........................................................................................................ATTTTCTATTAGAA---------AA........................................................................................16200.10200000000002000000
.................................................................................................TATATGATCAATTTTCTATTAGAA---------A.........................................................................................25200.10200000000110000000
.................................................................................................TATATGATCAATTTTCTATTAGAA---------AAA.......................................................................................27200.10200000011000000000
.TTCTCTCAATCAGCTGTT-TAA-----C...............................................................................................................................................................................................22200.10200000000200000000
................................................................................................TTATATGATCAATTTTCTATTAGAA---------AATA......................................................................................29200.10200000002000000000
...................................................................................................................TTAGAA---------AATAATTGCTAAAGGACGA-------TA..............................................................27200.10200010000010000000
........................................................................................................................A---------AATAATTGCTAAAGGACGA-------TATAT...........................................................25200.10200000000002000000
..............................................................................................ATTTATATGATCAATTTTCTATTAGC....................................................................................................26190.05100010000000000000
...........................................................................................TTTATTTATATGATCAATTTTCTATTAGAA---------..........................................................................................30190.05100000000100000000
............................................................................................TTATTTATATGATCAATTTTCTATTAGAA---------A.........................................................................................30190.05100000010000000000
.............................................................................................TATTTATATGATCAATTTTCTATTAGT....................................................................................................27190.05100000000001000000
.............................................................................................TATTTATATGATCAATTTTCTATTAGAA---------T.........................................................................................29190.05100000000010000000
.............................................................................................TATTTATATGATCAATTTTCTATT.......................................................................................................24190.05100000000010000000
...........................................................................................TTTATTTATATGATCAATTTTCTATTAGA....................................................................................................29190.05100000010000000000
.............................................................................................TATTTATATGATCAATTTTCTATTAGAA---------..........................................................................................28190.05100000001000000000
.................................................................................................TATATGATCAATTTTCTATTAGAA---------AATAATT...................................................................................31200.05100000001000000000
........................................................................................................................................TGCTAAAGGACGA-------TATATTC.........................................................20200.05100000000001000000
......................................................................................................................................................................................................AAACGAATTCTGGACCATAGT.21200.05101000000000000000
.................................................................................................................TATTAGAA---------AATAATTG..................................................................................16200.05100000000001000000
..TCTCTCAATCAGCTGTT-........................................................................................................................................................................................................17200.05100000000001000000
...........................................................................................................................................TAAAGGACGA-------TATATTGACAT.....................................................21200.05100000000000001000
.TTCTCTCAATCAGCTGT..........................................................................................................................................................................................................17200.05100000000001000000
.....................................................................................................TGATCAATTTTCTATTAGA....................................................................................................19200.05100000000100000000
............................................................................................................................................AAAGGACGA-------TATATTGAC.......................................................18200.05100000000001000000
.......CAATCAGCTGTT-TAA-----CAC.............................................................................................................................................................................................18200.05100000010000000000
....................................................................................................................................TAATTGCTAAAGGACG........................................................................16200.05100000000001000000
.............................................................................................TATTTATATGATCAATTTTCTAT........................................................................................................23200.05100000010000000000
..............................................................................................................................................AGGACGA-------TATATTGACATA....................................................19200.05100000010000000000
............................................................................................................TTTTCTATTAGAA---------AATAATTGCTAAAGGAC.........................................................................30200.05100000000100000000
..............................................................................................................TTCTATTAGAA---------AATAAT....................................................................................17200.05100000000001000000
.....................................................................................................................................AATTGCTAAAGGACGA-------T...............................................................17200.05100000000001000000
.................................................................................................TATATGATCAATTTTCTATTAGAA---------AATAAA....................................................................................30200.05100000010000000000
....................................................................................................................................TAATTGCTAAAGGACGA-------TA..............................................................19200.05100000000001000000
...............................................................................................TTTATATGATCAATTTTCTATTAGAA---------AAT.......................................................................................29200.05100000001000000000
....................................................................................................................TAGAA---------AATAATTGCTAAAGGACGA-------TATATT..........................................................30200.05100000001000000000
......................................................................................................................................................................................................AAACGAATTCTGGACCATAGTG22200.05100000000001000000
......................................................................................................................GAA---------AATAATTGCTAAAGGACGA-------TATAT...........................................................27200.05100000000010000000
.................................................................................................................TATTAGAA---------AATAATTGCTAAAGGACGA-------T...............................................................28200.05100000010000000000
........................................................................................................................................TGCTAAAGGACGA-------TATATTGACATATT..................................................27200.05100000001000000000
........................................................................................................................A---------AATAATTGCTAAAGGACGA-------T...............................................................21200.05100000000000001000
.....................................................................................................................AGAA---------AATAATTGCTAAAGGACGA-------TATA............................................................27200.05100000000000010000
........................................................................................................................................TGCTAAAGGACGA-------TATATTGACATT....................................................25200.05100000001000000000
.............................................................................................................................................AAGGACGA-------TATATTGA........................................................16200.05100000000001000000
.........................................................................................................................................................................................................CGAATTCTGGACCATAGT.18200.05100000010000000000
....................................................................................................................TAGAA---------AATAATTGCTAAAGGACGA-------TATA............................................................28200.05100000000000010000
...................................................................................................................................................................ACATAGAAATTTAGAA.........................................16200.05100000000001000000
.TTCTCTCAATCAGCTGTA-........................................................................................................................................................................................................18200.05100000000001000000
......................................................................................................................................ATTGCTAAAGGACGA-------TATATTGAC.......................................................24200.05100000000001000000
.TTCTCTCAATCAGCT............................................................................................................................................................................................................15200.05100000000001000000
................................................................................................TTATATGATCAATTTTCTATTAGAA---------TT........................................................................................27200.05100000001000000000
............................................................................................................TTTTCTATTAGAA---------AATAATTGCTAAAGG...........................................................................28200.05100000000010000000
...........................................................................................................................................TAAAGGACGA-------TATATT..........................................................16200.05100000000001000000
....................................................................................................................................TAATTGCTAAAGGACGA-------................................................................17200.05100000000001000000
................................................................................................TTATATGATCAATTTTCTATTAGAA---------A.........................................................................................26200.05100000010000000000
............................................................................................................TTTTCTATTAGAA---------AATAATTGCTAAAGGA..........................................................................29200.05100000000100000000
.................................................................................................TATATGATCAATTTTCTATTAGAA---------AATAA.....................................................................................29200.05100000010000000000
...................................................................................................TATGATCAATTTTCTATTAGAA---------AATAA.....................................................................................27200.05100000000100000000
................................................................................................TTATATGATCAATTTTCTATTAGAA---------AATAAT....................................................................................31200.05100000010000000000
...................................................................................................................................ATAATTGCTAAAGGACGA-------TATATT..........................................................24200.05100000001000000000
............................................................................................................................................AAAGGACGA-------TATATTGACA......................................................19200.05100000000001000000
..................................................................................................................ATTAGAA---------AATAATTGCTAAAGGACGA-------................................................................26200.05100000000100000000
...................................................................................................................TTAGAA---------AATAATTGCTAAAGGACGA-------................................................................25200.05100000000000010000
........AATCAGCTGTT-TAA-----CA..............................................................................................................................................................................................16200.05100000000001000000
...............................................................................................TTTATATGATCAATTTTCTATTAGAA---------AAA.......................................................................................29200.05100000001000000000
......................................................................................................................................ATTGCTAAAGGACGA-------TATATT..........................................................21200.05100000000001000000
....................................................................................................................................TAATTGCTAAAGGACGA-------TATATTGACT......................................................27200.05100000000001000000
droSec2
CTTCTCTCAATCAGCTGTT---------CACCTTTAAATGCTCA---TAAAAAGATTTAGTCAAGCTTTCGGTCAATTT-TGTT---TTTTTTTATTTATATGATATATTTTCTTTTAGAA---------AATAATTGCTAAAGGACGA-------TATATTGTCATAAAAATGTAGACTTTATGCCAAAAAAAAAAAAAACGAATTCTGGACCATAGTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................TTAGTCAAGCTTTCGGTCAATTT-T...........................................................................................................................................2411.0011000
....................................................................................................................................TAATTGCTAAAGGACGA-------TATATT..........................................................23200.3574030
.........................................................................................................................................GCTAAAGGACGA-------TATATT..........................................................18200.0511000
....................................................................................................................................TAATTGCTAAAGGACGA-------TATAT...........................................................22200.0510010
.....................................................................................................................................AATTGCTAAAGGACGA-------TATATTG.........................................................23200.0510010
......................................................................................................................................ATTGCTAAAGGACGA-------TATATT..........................................................21200.0510001
dm3
ATTCTCTCAATCAGCTGTT-TAAAACTTCAACTTTAAAAGCTCA---TAAAACGATTTAGTGAAGCTTTCGGTCAATTT-TGTTTTTGGTTTTTATTTATATGATCAATTTTCTATTAGAA---------AATAATTGCTAGAGGACGA-------TATATTGACATAAAAATTTAGACTTTATGCCAAAAA----AAAAACGAATTCTGGACCATAGTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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.......................................................................................................................................TTGCTAGAGGACGA-------TATATTGACAT.....................................................25140.93130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002000000030100000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103000000000000000000000000
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droEre2
CTTCTCTCAATCAGCTGTT-TAACACTGCACC-CTAAAAGCTCA---TTAAAAGCTTTAGTAAAGCTTTCGGTCAGTTT-------TGTTTTTTATTTATTTGATCAATTTTCTTTTAAAA---------AATAATTGATAAAGGACGA-------TATATTGACATAAAAATTTTGACTTAATGATAAAAT------AAAAGAATTTTGGACCATAGTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................TATTGACATAAAAATTTTGACTTAAT....................................2650.2011000000
.......CAATCAGCTGTT-TAACACTGC...............................................................................................................................................................................................2160.1710100000
droYak3
CTTCTCGCCATCA----------CACTGCACTTTTAAAAGTTCA---TAAAAGACTTTAGTAATGGTTTCGGTCAATATTGTTTTTGGTTTTTTATTTATATGATAAATTTTCTTTTAGAA---------AATAATTGATAAAGGACGA-------TATATTGACATAAAAATTTAGACTTAATGACAAAAA------AAACGAATTCTGGACCATAGTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
TATTCGGAAATCAGCTGAT-CGCAATCGCACTTTTAAAAGCTCA---CAATAAGCTTTGGTGGCACATTTAAAGCTTTT-AATTAACATTTTTATAATGTATGAAGAATTTACTTTAAGAT---------AAAAATAAGAAAACAACGA-------TATATTAACATAAAAAAATCGACTTTATGCCCAAGA------AAACGGATTCTGGACCATAGTGSizeHit CountTotal NormTotal
No Reads
droBia1
TATTCGGAAATCAGCTGAT-CGCAATCGCACTTTTAAAAGCTCA---CAATAAGCTTTGGTGGCACATTTAAAGCTTTT-AATTAACATTTTTATAATGTATGAAGAATTTACTTTCAGAT---------AAAAACAAGAAAACAACGA-------TATATTGACATAAAAAAATCGACTTTATGCCAAAAA-----AAAACGGGTTCTGGACCATAGTGSizeHit CountTotal NormTotal
No Reads
droTak1
TTAGTCCTAAGCAGCTGAT-CGATTGTGTACTTTTGAAAGCTCA---TGAAAAGCGTTAGTGTAGCTTTTAAAGCTTTT-T--TTTAGGTTTGTATATGTATGATCTATTAACTTTAAGAA---------TTTAAAATAAAAAATACAA-------AACATTAACATAAAAATTTCGACTTTATGCCAAAAA------ATCGGCCGCTCGGACCATAGTGSizeHit CountTotal NormTotal
No Reads
droEle1
TATTCGGAAATCAGCTGAT-CGCAAGCTTTATTTTAAAAAATAT---CAAAAAGACTTGGTGGCGCTTTTAAAGTTTTT-AAAACAAATTTTTATAATGAATGATGAATTTTCTTTAAGAT---------TAAAATAAGAAAACAACGA-------TATATTAACATAGAAAAATCGACTTTATGCCAAAAC----AACAACAGAATCTGGACCATAGTGSizeHit CountTotal NormTotal
No Reads
droRho1
ATATTCCCAAACAGTTGTTTCGATTGTGTGGCTTGGAAAGCTCA---TAAAAAGCATCAGTGATGCTTTTAAAGCTAAT-TTTTTTAGTTTTGTTTTTGTTTAATGTATTAACTTTAAGAA---------TTTTAAATCAAAAATTCAA-------AACATTAACATAAAAATTTAGTATTTATGCCAAAAA------AATCGACTTCTGGACCATAGTGSizeHit CountTotal NormTotal
No Reads
droFic1
CTAATCCTAAACAACTGAT-CGATTGCATTCTTTTGAAAGCTCA---TACAAAGCTTCAGTGAAGCTTTTAAAGATTTA-TTATTTAAGTTTTTAGAAGTATGATGTATTAACTTTAAGAA---------TTTAAAACCAAAAATACAA-------AACATTAACATAAAAATTTCGACTTTATGCCAAAAA------ATCCGACTTTTGGACCATAGTGSizeHit CountTotal NormTotal
No Reads
droKik1
TATTCGGAAATCAGCTGAT-CGCAATCGCACTTTTAAAAGCTCA---CAATAAGCTTTGGTGGCACATTTAAAGCTTTT-AATTAACATTTTTATAATGTATGAAGAATTTACTTTAAGAT---------AAAAATAAGAA-AAAACGA-------TATATTAACATAAAA-AATCGACTTTATGCCAAAA-------AAACGGATTCTGGACCATAGTGSizeHit CountTotal NormTotal
No Reads
droAna3
CCGATCTTGATCAAATTTT-GCA---CAGACCTCTGAAATACGATTCTCAAGAACTTGAACAAAGGAT--------------TTTTTTATTTTTATTTATAAAATAGTTTTTACATAAAAA---------AAAAATTGTTAAAC-------------AAATT-TCGACAAAATTTGAATTTTTTTGCAAAAA------GGTGTCCTAAAAATCCAATTTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TATTCGGAAATCAGCTGAT-CGCAATCGCACTTTTAAAAGCTCA---CAATAAGCTTTGGTGGCACATTTAAAGCTTTT-CATTAACATTTTTATAATGTATGAAGAATTTACTTTAAGAT---------AAAAATAAGAAACCAACGA-------TATATTGACATAAAAAAATCGACTTTATGCCAAAAA------AAACGGGTTCTGGACCATAGTGSizeHit CountTotal NormTotal
No Reads
dp5
TGTCTCACAATCAGCTGAT-TGATTGTTTACTTTCAAAAGCTCG---CAAATAGCTTCAGGGAAGCTTAATA--ATATT-ATTTTTTATTTTTAATATGTATGATGAATTTACTTTGAGAA---------TTTGCAAGAAAAAACGTAA-------TCCATTCACATAAAAATTTCGACTTTATGCCAAAAA------AAACGAATTCTGGACCATAGTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................TACTTTGAGAA---------TTTGCAAGAAAAAACG..........................................................................27973.006570186400003461210
.......................................................................................................................................................................................TGCCAAAAA------AAACGAATTCTGGACCA.....26314.0042014000002710
..............................................................................................................TACTTTGAGAA---------TTTGCAAGAAAAAAC...........................................................................26912.891160552800003030
TGTCTCACAATCAGCTGAT-TGATTG..................................................................................................................................................................................................25110.001001000000000
............................................................................................................................................................TCCATTCACATAAAAATTTCGACT........................................2484.003202820000110
TGTCTCACAATCAGCTGAT-TGATT...................................................................................................................................................................................................2414.0040400000000
..............................................................................................................TACTTTGAGAA---------TTTGCAAGAAAAAA............................................................................2593.7834017200001410
TGTCTCACAATCAGCTGAT-TGATTGT.................................................................................................................................................................................................2613.0030300000000
..........TCAGCTGAT-TGATTGTTTACTTTC.........................................................................................................................................................................................2413.0030300000000
.........................................TCG---CAAATAGCTTCAGGGAAG...........................................................................................................................................................2113.0030300000000
..........TCAGCTGAT-TGATTGTTTACTTTCAAA......................................................................................................................................................................................2713.0030200000100
..........TCAGCTGAT-TGATTGTTTACTTTCA........................................................................................................................................................................................2513.0030300000000
..................................................................................................................................................TAA-------TCCATTCACATAAAAATTTCGACT........................................2782.38190870000400
.......................................................................................................................................................................................TGCCAAAAA------AAACGAATTCTGGACC......2532.3370310000120
............................................................................................................................................................TCCATTCACATAAAAATTTCGACTT.......................................2582.251801710000000
.....................................................................................................................................................................................TATGCCAAAAA------AAACGAATTCTGG.........2432.0060100000320
...............................TTTCAAAAGCTCG---CAAATAGCTTCAGG...............................................................................................................................................................2712.0020200000000
............................TACTTTCAAAAGCTCG---CAAATAGCT....................................................................................................................................................................2512.0020200000000
.....................................................................................................................................................................................TATGCCAAAAA------AAACGAATTCTGGACC......2732.0060410000010
.................................TCAAAAGCTCG---CAAATAGCTTCAGGGA.............................................................................................................................................................2712.0020200000000
TGTCTCACAATCAGCTGAT-TGAT....................................................................................................................................................................................................2312.0020200000000
..............................................................................................................TACTTTGAGAA---------TTTGCAAGAAAAA.............................................................................2491.891701410000200
.....................................................................................................................................................................................TATGCCAAAAA------AAACGAATTCTGGAC.......2631.6750000000500
..............................................................................................................TACTTTGAGAA---------TTTGCAAGAAAA..............................................................................2391.671501200001200
.....................................................................................................................................................................................TATGCCAAAAA------AAACGAATTCTGGACCA.....2831.6750210000200
...............................................................................................................ACTTTGAGAA---------TTTGCAAGAAAAAACG..........................................................................2691.56140700000700
............................................................................................................................................................................................AAAA------AAACGAATTCTGGACCATAG..2461.5090100000710
...............................TTTCAAAAGCTCG---CAAATAGCTTCAG................................................................................................................................................................2621.5030300000000
............................................................................................................................................................TCCATTCACATAAAAATTTCGACTTTA.....................................2781.251001000000000
..............................................................................................................TACTTTGAGAA---------TTTGCAAGAAAAAACGA.........................................................................2891.221101000000100
..............................................................................................................TACTTTGAGAA---------TTTGCAAGAAAAAACGT.........................................................................2891.11100720000010
...........CAGCTGAT-TGATTGTTTACTTTCA........................................................................................................................................................................................2411.0010100000000
....................................AAAGCTCG---CAAATAGCTTCAGGGAAG...........................................................................................................................................................2611.0010100000000
.................................TCAAAAGCTCG---CAAATAGCTTCAGGG..............................................................................................................................................................2611.0010100000000
.........................................TCG---CAAATAGCTTCAGGGAAGC..........................................................................................................................................................2211.0010100000000
................GAT-TGATTGTTTACTTTCAAAAGC...................................................................................................................................................................................2411.0010100000000
....................................................................................................................................................................................TTATGCCAAAAA------AAACGAATTCTGGAC.......2731.0030100000200
...........CAGCTGAT-TGATTGTTTACTTTCAA.......................................................................................................................................................................................2511.0010100000000
....................................................................................................................................................................................TTATGCCAAAAA------AAACGAATTCTGG.........2531.0030000000030
...........CAGCTGAT-TGATTGTTTACT............................................................................................................................................................................................2011.0010100000000
.....................GATTGTTTACTTTCAAAAGC...................................................................................................................................................................................2011.0010100000000
...........CAGCTGAT-TGATTGTTTACTTTCAAAA.....................................................................................................................................................................................2711.0010100000000
........................................CTCG---CAAATAGCTTCAGGGAAGC..........................................................................................................................................................2311.0010100000000
..................................CAAAAGCTCG---CAAATAGCTTCAGG...............................................................................................................................................................2411.0010100000000
..........TCAGCTGAT-TGATTGTTTACTTT..........................................................................................................................................................................................2311.0010100000000
.........ATCAGCTGAT-TGATTGTTTACT............................................................................................................................................................................................2211.0010100000000
............................TACTTTCAAAAGCTCG---CAAATAGC.....................................................................................................................................................................2411.0010000000100
............................................................................................TAATATGTATGATGAATTTACTTTGA......................................................................................................2661.0060000000420
.GTCTCACAATCAGCTGAT-TGA.....................................................................................................................................................................................................2111.0010100000000
...........................TTACTTTCAAAAGCTCG---CAAATAGCTT...................................................................................................................................................................2711.0010100000000
..TCTCACAATCAGCTGAT-TGATTGT.................................................................................................................................................................................................2411.0010100000000
......................................AGCTCG---CAAATAGCTTCAGGGAAG...........................................................................................................................................................2411.0010100000000
......................................................................................................................................................................................ATGCCAAAAA------AAACGAATTCTGGA........2431.0030000000300
......................................................................................................................................................................................ATGCCAAAAA------AAACGAATTCTGGACC......2631.0030100000200
..........................TTTACTTTCAAAAGCTCG---CAAATAG......................................................................................................................................................................2511.0010100000000
......................ATTGTTTACTTTCAAAAGCTCG---CAAA.........................................................................................................................................................................2611.0010100000000
..................................CAAAAGCTCG---CAAATAGCTTCAGGGA.............................................................................................................................................................2611.0010100000000
.......................TTGTTTACTTTCAAAAGCTCG---CAAA.........................................................................................................................................................................2511.0010100000000
...............TGAT-TGATTGTTTACTTTCAAAAGC...................................................................................................................................................................................2511.0010100000000
........................TGTTTACTTTCAAAAGCTCG---CAAAA........................................................................................................................................................................2511.0010100000000
..............................................................................................................TACTTTGAGAA---------TTTGCAAGAAAAAAA...........................................................................2690.8980520000100
..............................................................................................................TACTTTGAGAA---------TTTGCAAGAAA...............................................................................2290.8980600000020
..................................................................................................................................................TAA-------TCCATTCACATAAAAATTTCGAC.........................................2680.8870520000000
..................................................................................................................................................TAA-------TCCATTCACATAAAAATTTCGACTT.......................................2880.7560600000000
...............................................................................................................ACTTTGAGAA---------TTTGCAAGAAAAAAC...........................................................................2590.6760600000000
.....................................................................................................................................................................................TATGCCAAAAA------AAACGAATTCTGGA........2530.6720000000200
............................................................................................................................................................................................AAAA------AAACGAATTCTGGACCATA...2360.6740000000220
.............................................................................................................................................................................................AAA------AAACGAATTCTGGACCATAGTG2560.6740000000310
..............................................................................................................TACTTTGAGAA---------TTTGCAAGAA................................................................................2190.5650500000000
............................................................................................................................................................TCCATTCACATAAAAATTTCGACTTT......................................2680.5040130000000
..............................................................................................................TACTTTGAGAA---------TTTGCAAGAAAAAAAC..........................................................................2790.4440000000400
................................................................................................................CTTTGAGAA---------TTTGCAAGAAAAAACG..........................................................................2590.4440200000200
...........................................................................................................................................................................................AAAAA------AAACGAATTCTGGACCATAG..2550.4020100000100
............................................................................................................................................................TCCATTCACATAAAAATTTCGAC.........................................2380.3830120000000
.......................................................................................................................................................................................TGCCAAAAA------AAACGAATTCTGGAC.......2430.3310000000100
......................................................................................................................................................................................................AAACGAATTCTGGACCATAGT.2160.3320000000200
.......................................................................................................................................................................................TGCCAAAAA------AAACGAATTCTGGACCATA...2830.3310010000000
..............................................................................................................TACTTTGAGAA---------TTTGCAAGA.................................................................................2090.3330200001000
..............................................................................................................................................................................TCGACTTTATGCCAAAAA------AAACG.................2330.3310100000000
......................................................................................................................................................................................ATGCCAAAAA------AAACGAATTCTGGAC.......2530.3310100000000
..........................................................................................................................................................................................CAAAAA------AAACGAATTCTGGACCATAG..2630.3310100000000
.......................................................................................................................................................................................TGCCAAAAA------AAACGAATTCTGGACCAT....2730.3310000000100
...............................................................................................................ACTTTGAGAA---------TTTGCAAGAAAAAA............................................................................2490.3330100000200
.......................................................................................................................................................................................TGCCAAAAA------AAACGAATTCTGGA........2330.3310000000100
......................................................................................................................................................................TAAAAATTTCGACTTTATGCCAAAA.............................2570.2920200000000
............................................................................................................................................................................................AAAA------AAACGAATTCTGGACCA.....2170.2920000000200
................................................................................................................................................................TTCACATAAAAATTTCGACTTTATGC..................................2670.2920200000000
.............................................................................................................................................................CCATTCACATAAAAATTTCGACT........................................2380.2520200000000
.............................................................................................................................................................CCATTCACATAAAAATTTCGACTT.......................................2480.2520200000000
................................................................................................................................................................TTCACATAAAAATTTCGACTTT......................................2280.2520200000000
..............................................................................................................TACTTTGAGAA---------TTTGCAAGAAAAAACA..........................................................................2790.2220200000000
..............................................................................................................TACTTTGAGAA---------TTTGCAAGAAAAAAACG.........................................................................2890.2220000000020
.............................................................................................................TTACTTTGAGAA---------TTTGCAAGAAAAAA............................................................................2690.2220100000100
...............................................................................................TATGTATGATGAATTTACTTTGAGAA---------T.........................................................................................2750.2010100000000
.......................................................................................ATTTTTAATATGTATGATGAATT..............................................................................................................2350.2010100000000
...........................................................................................................................................................................................AAAAA------AAACGAATTCTGGACCATAGT.2650.2010000000010
..............................................................................................................TACTTTGAGAA---------TTTGCAAGAAAAAACAA.........................................................................28100.2020200000000
.............................................................................................................................................................................................AAA------AAACGAATTCTGGACCATAGT.2460.1710000000010
.............................................................................................................................................................................TTCGACTTTATGCCAAAAA------AAA...................2260.1710100000000
.................................................................................................TGTATGATGAATTTACTTTGAGAA---------T.........................................................................................2560.1710000000010
...................................................................................................TATGATGAATTTACTTTGAGA....................................................................................................2160.1710000000010
............................................................................................................................................................................................AAAA------AAACGAATTCTGGACCATAGTG2660.1710000000010
...............................................................................................................................................................................................A------AAACGAATTCTGGACCATAGT.2260.1710100000000
......................................................................................................................................................................................................AAACGAATTCTGGACCATA...1960.1710100000000
.................................................................................................TGTATGATGAATTTACTTTGAGAA---------TT........................................................................................2660.1710100000000
............................................................................................TAATATGTATGATGAATTTAC...........................................................................................................2160.1710000001000
...........................................................................................TTAATATGTATGATGAATT..............................................................................................................1960.1710100000000
...........................................................................................TTAATATGTATGATGAATTTACTTTGA......................................................................................................2760.1710000000100
......................................................................................................GATGAATTTACTTTGAGAA---------TTTGCA....................................................................................2560.1710100000000
.........................................................................................................................................................................................................CGAATTCTGGACCATAGTG1960.1710000000100
............................................................................................................................................................................................AAAA------AAACGAATTCTGGACC......2070.1410010000000
......................................................................................................................................................................................................AAACGAATTCTGGACCAA....1870.1410000000100
................................................................................................................................................................TTCACATAAAAATTTCGACTTTATGCC.................................2770.1410000000100
.................................................................................................................................................................TCACATAAAAATTTCGACTTTATGCC.................................2670.1410100000000
..........................................................................................................................................................................AATTTCGACTTTATGCCAAAAA------A.....................2370.1410100000000
.............................................................................................................................................................CCATTCACATAAAAATTTCGACTTT......................................2580.1310100000000
.............................................................................................................................................................CCATTCACATAAAAATTTCGACTTTA.....................................2680.1310100000000
.....................................................................................................................................................................ATAAAAATTTCGACTTTATGC..................................2180.1310100000000
..................................................................................................................................................TAA-------TCCATTCACATAAAAATTTCGACC........................................2780.1310010000000
...................................................................................................................................................AA-------TCCATTCACATAAAAATTTCGACT........................................2680.1310100000000
...............................................................................................................ACTTTGAGAA---------TTTGCAAGAAAAAAAA..........................................................................2690.1110100000000
..............................................................................................................TACTTTGAGAA---------TTTGCAAGAAAAAACGTA........................................................................2990.1110100000000
..........................................................................................................AATTTACTTTGAGAA---------TTTGCA....................................................................................2190.1110100000000
..............................................................................................................TACTTTGAGAA---------TTTGCAAGAAAAAAGCG.........................................................................2890.1110000000100
..........................................................................................................AATTTACTTTGAGAA---------TTTGCAAGAAA...............................................................................2690.1110100000000
............................................................................................................TTTACTTTGAGAA---------TTTGCAAGAAAAAAC...........................................................................2890.1110010000000
...............................................................................................................ACTTTGAGAA---------TTTGCAAGAAAA..............................................................................2290.1110100000000
...............................................................................................................ACTTTGAGAA---------TTTGCAAGAAAAA.............................................................................2390.1110100000000
.................................................................................................................TTTGAGAA---------TTTGCAAGAAA...............................................................................1990.1110100000000
...............................................................................................................ACTTTGAGAA---------TTTGCAAGAAAAAACA..........................................................................2690.1110100000000
..............................................................................................................TACTTTGAGAA---------TTTGCAAG..................................................................................1990.1110000000010
..............................................................................................................TACTTTGAGAA---------TTTGCAAGAAAAAAAA..........................................................................2790.1110100000000
.............................................................................................................TTACTTTGAGAA---------TTTGCAAGAAAAAACG..........................................................................2890.1110100000000
......................................................................................................................GAA---------TTTGCAAGAAAAAACG..........................................................................1990.1110100000000
..............................................................................................................TACTTTGAGAA---------TTTGCAAGAAAAAACT..........................................................................27100.1010100000000
droPer2
TTTCTCACAATCGGCTGAT-CGATTGTTCAATTTCAAAGGCTCG---CAAAAAGCTTTAGGGAAGCTTACTAAT-TTTT-TTTTTTAATTTTTAATATGTGTGATAAATTTACTTTGAGAA---------TTTGTAAGAAAAAACGTAA-------TCCATTCATATAAAAATTTCGACTTTATGCGAAAAA------AAACGAATTCTGGACCATAGTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AATTTCTTATA------------------------------------AAAAATGTTTTATTCAAGCTTTGTTTTAATTT-------TTGTATTAATTTATAGGTTTGGTTA-----AACTT---TGTAATTTTAAAGTCAATAATTTAAAAGACTCAATCTTC----------TTAAACTTTCTTTCTAATA----ATAAGGATGATCTCAACCAAAGAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
ATTTGGTCAG--------A-CTCAGTGACAATTTT----------------------------------------------------GGGTTTTGTGTCTATTAGAAACTTTTAAATGGATTAC------AATGTATGGTAAAGGTGAA-------CCTGGTTTTTCAAAAATTTAAAATT---------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................TT----------------------------------------------------GGGTTTTGTGTCTATTAGAAACTTT............................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
--------AATCAGCTGAT-CGATAGTTCACTTTTAAAAGCTCT---CATAAAGCTTTCGTTTCACTTCTAAAGCTTTT-TATTATCATTTTTATAATGTATGATGAATTTACTTTAAGGC---------AAAAAAAAATTTTTAACGA-------TTCATTAACATCGAAAAATAGACTTTATGCCAAAA-------AAACGAAATCTGGACCATAGTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................TGTATGATGAATTTACTTTAAGGC---------A.........................................................................................25162.00626100010
..............................................................................................TAATGTATGATGAATTTACTTTAAGGC---------..........................................................................................27125.00252500000
.................................................................................................TGTATGATGAATTTACTTTAAGGC---------..........................................................................................24124.00242300010
..............................................................................................TAATGTATGATGAATTTACTTTAAGG....................................................................................................26110.00101000000
..............................................................................................TAATGTATGATGAATTTACTTTAAGGC---------A.........................................................................................2819.009900000
..............................................................TCACTTCTAAAGCTTTT-TATTATCATT..................................................................................................................................2736.00181400031
.................................................................................................TGTATGATGAATTTACTTTAAGGC---------AAA.......................................................................................2716.006600000
.................................................................................................TGTATGATGAATTTACTTTAAGGC---------AA........................................................................................2615.005500000
..................................................................................................GTATGATGAATTTACTTTAAGGC---------A.........................................................................................2414.004400000
.................................................................................................TGTATGATGAATTTACTTTAAGGC---------AAAA......................................................................................2813.003300000
..............................................................TCACTTCTAAAGCTTTT-TATTATCAT...................................................................................................................................2632.337700000
.................................................................................................TGTATGATGAATTTACTTTAAGGC---------AAAAA.....................................................................................2912.002200000
...............................................................................................AATGTATGATGAATTTACTTTAAGG....................................................................................................2512.002200000
.................................................................................................TGTATGATGAATTTACTTTAAGG....................................................................................................2312.002200000
...............................................................................................AATGTATGATGAATTTACTTTAAGGC---------..........................................................................................2612.002200000
..............CTGAT-CGATAGTTCACTTTTAAAAGCTC.................................................................................................................................................................................2821.503300000
..............................................................TCACTTCTAAAGCTTTT-TATTATCA....................................................................................................................................2531.334400000
.................................................................................................TGTATGATGAATTTACTTTAAGGC---------AAT.......................................................................................2711.001100000
.............GCTGAT-CGATAGTTCACTTTTAAAAG....................................................................................................................................................................................2621.002000020
................................................................................................ATGTATGATGAATTTACTTTAAGGC---------A.........................................................................................2611.001100000
............................................................................................TATAATGTATGATGAATTTACTTTAAGG....................................................................................................2811.001100000
...................................................................................................TATGATGAATTTACTTTAAGGC---------AAA.......................................................................................2511.001000010
...............TGAT-CGATAGTTCACTTTTAAAAGCT..................................................................................................................................................................................2621.002200000
...............................................................................................AATGTATGATGAATTTACTTTAAGGC---------A.........................................................................................2711.001100000
.............................................................TTCACTTCTAAAGCTTTT-TATTATCAT...................................................................................................................................2731.003300000
..............................................................................................TAATGTATGATGAATTTACTTTAAGGC---------G.........................................................................................2811.001100000
..................................................................................................GTATGATGAATTTACTTTAAGGC---------..........................................................................................2311.001100000
............................................................................................TATAATGTATGATGAATTTACTTTAAGGC---------..........................................................................................2911.001100000
...............................................................CACTTCTAAAGCTTTT-TATTATCAT...................................................................................................................................2530.672200000
............................................................TTTCACTTCTAAAGCTTTT-TATTATC.....................................................................................................................................2630.672200000
..........................................................................................TTTATAATGTATGATGAATTTACT..........................................................................................................2420.501100000
..........................................................................................TTTATAATGTATGATGAATTTACTTTA.......................................................................................................2720.501100000
...........................................................................................TTATAATGTATGATGAATTTACTTT........................................................................................................2520.501100000
...............TGAT-CGATAGTTCACTTTTAAAAGC...................................................................................................................................................................................2520.501100000
.................................................................................................................................................................TAACATCGAAAAATAGACTTTATGCC.................................2640.502100010
...............TGAT-CGATAGTTCACTTTTAAAAGCTC.................................................................................................................................................................................2720.501100000
..................T-CGATAGTTCACTTTTAAAAGCTCT---C............................................................................................................................................................................2620.501100000
...........................................................................................TTATAATGTATGATGAATTTACT..........................................................................................................2320.501100000
.........ATCAGCTGAT-CGATAGTTC...............................................................................................................................................................................................1930.331100000
...........CAGCTGAT-CGATAGTTCAC.............................................................................................................................................................................................1930.331100000
.........ATCAGCTGAT-CGATAGTTCA..............................................................................................................................................................................................2030.331100000
............AGCTGAT-CGATAGTTCAC.............................................................................................................................................................................................1830.331000010
............................................................TTTCACTTCTAAAGCTTTT-TATTATCAT...................................................................................................................................2830.331100000
...........................................................GTTTCACTTCTAAAGCTTTT-TATTATCAT...................................................................................................................................2930.331100000
.................................................................CTTCTAAAGCTTTT-TATTATCATTT.................................................................................................................................2530.331100000
..............................................................................................TAATGTATGATGAATTTACTTTAAG.....................................................................................................2530.331100000
................................................................ACTTCTAAAGCTTTT-TATTATCATT..................................................................................................................................2530.331100000
........AATCAGCTGAT-CGATAGTTC...............................................................................................................................................................................................2030.331100000
.............................................................TTCACTTCTAAAGCTTTT-TATTATCA....................................................................................................................................2630.331100000
.............................................................TTCACTTCTAAAGCTTTT-TATTATC.....................................................................................................................................2530.331100000
.........ATCAGCTGAT-CGATAGTTCAC.............................................................................................................................................................................................2130.331000010
...........................................T---CATAAAGCTTTCGTTTCACTTCTAAAGC.................................................................................................................................................2940.251100000
.................................................TAAAGCTTTCGTTTCACTTCTAAAGC.................................................................................................................................................2640.251000010
............................................................TTTCACTTCTAAAGCTTTT-TATT........................................................................................................................................2340.251000010
droGri2
TAATTCACCATT-----------------------------------------------------------------------------------------------------TATTATAA---------AACACTTGCTAAGGTACTT-------AATATTGACACAAA--------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/15/2015 at 02:49 PM