ID:

dsi_5294

 Coordinate:

2r:17836204-17836353 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.1 -16.1 -15.8

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

ACGAGGAAAAACGAAAAGGAAACAAAACAAAAAAAAAGGAAAACTTACCTGTAAGTTAATGCAAAATACACACTCTGCGTATGTGGGTGTGTGTACGCGACTTTTCTATTTAAGTAAGTTTTAAGCGACAAAAACAAACAAAAATATCAAATATAATTGCAAATAAATCATGCGAAATTTAATATATAAATAATATATTATATATAAATAGTGAAACCAATATAAGGGCGGGCAAAATTAAGCGAATTAA
******************************************************************..(((((.((((....)))))))))(((.((((((((..((.....)).)))))....)))))).....................................*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR902008
ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 O001
Testis
............................................................................................................................................................................................................................TATAAGGGCGGGCAAAATTAAGCGAAT... 27 0 1 2.00 2 0 1 0 0 0 0 0 1 0 0
..................................................................TACACACTCTGCGTATGTGGGTGTGT.............................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................ATACACACTCTGCGTATGTGGGT.................................................................................................................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................TAGTGAAACCAATATAAGGGCGGGCA................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................................TTACCTGTAAGTTAATGCAAA......................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................TAAGGGCGGGCAAAATTAAGCGAAT... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
ACGAGGAAAAACGAAAAGGAAACA.................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................CTCTGCGTATGTGGGTGTGT.............................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................AAATATCAAATATAATTGCAAATAAA................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................TGCGTATGTGGGTGTGTGTACGCGACT.................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AATAGTGAAACCAATATAAGGGCGGGC................. 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...............................AAAAAAGGAAAACTTACCTGTAA.................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................TTACCTGTAAGTTAATGCAAAATA...................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................AAATAAATCATGCGAAATT....................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................................................CAAAATACACACTCTGCGTATGTGGGT.................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...CGGAAAAACGAAAAGGAAACAAA................................................................................................................................................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................TACGCGACTTTTCTATTTAAG........................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................TATAAATAGTGAAACCAATATAAGGGC..................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........................................................................TCTGCGTATGTGGGTGTGT.............................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................ATATAAATAATATATTATA................................................ 19 0 3 0.33 1 0 0 0 0 0 0 0 0 0 1
...................................AAGGAAAACTTACCT........................................................................................................................................................................................................ 15 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0

Anti-sense strand reads

TGCTCCTTTTTGCTTTTCCTTTGTTTTGTTTTTTTTTCCTTTTGAATGGACATTCAATTACGTTTTATGTGTGAGACGCATACACCCACACACATGCGCTGAAAAGATAAATTCATTCAAAATTCGCTGTTTTTGTTTGTTTTTATAGTTTATATTAACGTTTATTTAGTACGCTTTAAATTATATATTTATTATATAATATATATTTATCACTTTGGTTATATTCCCGCCCGTTTTAATTCGCTTAATT
***********************************************************************************..(((((.((((....)))))))))(((.((((((((..((.....)).)))))....)))))).....................................****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR902009
testis
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
................................................................................................................TCATTCAAAATTCGCTGTTTT..................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
.....................................................................................................................CAAAATTCGCTGTTTTTGTTTGTTT............................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
...................................................................................ACCCACACACATGCGCTGAAA.................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0
.............................................ATGGCCATTCGATTACG............................................................................................................................................................................................ 17 2 5 0.20 1 1 0 0 0 0
...............................................................................................................................................................................................................TCTCACATTGGTTATATTTC....................... 20 3 16 0.06 1 0 0 0 1 0
...GCCTTTTTGCTATTCCTT..................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:17836154-17836403 - dsi_5294 ACGAG-GA--AAAACGAAAAGGAAACAAAACAAA------AAAA----------------------------------AAG-GAAAACTTACCTGTAAGTTAA-TGCAAAATACAC--------------------------A------------------------------------------------CTCTGCGTATGT--GGGTG----------------TGTGTACGCG-ACTTTTCTATTTAAGTAAGTTTTAAGCGA--------------------CAAA-AA--------------------------------------------CAAACA-------------------------------A---AAATATCAAATATAA-TT------GCA-AATAAATCATGCGAAATTTA----------------------------ATATAT--------AAATAATATAT-------TA--T------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAA
droSec2 scaffold_9:612780-613030 - ACGAG-GA--A-AACGAAAAGGAAACAAAACAAAA----AAAAA----------------------------------AAG-GAAAACTTACCTGTAAGTTAA-TGCAAAATACAC--------------------------A------------------------------------------------CTCTGCGTATGT--GGGTG----------------TGTGTACGCG-ACTTTTCTATTTAAGTAAGTTTTAAGCGA--------------------CAAA-AA--------------------------------------------CAAACA-------------------------------A---AAATATCAAATATAA-TT------GCA-AATAAATCATGCGAAATTTA----------------------------ATATAT--------AAATAATATAT-------TA--T------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAA
dm3 chr2R:17281506-17281743 - ACGAG-GA--AAAA----------------CAAAAA--AAAAAA----------------------------------AAG-GAAAACTTACCTGTAAGTTAA-TGCAAAATACAC--------------------------A------------------------------------------------CTCTGCGTATGT--GGGTG----------------TGTGTACGCG-ACTTTTCTATTTAAGTAAGTTTTAAGCGA--------------------CAAA-AA--------------------------------------------CAAACA-------------------------------A---AAATATCAAATATAA-TT------GCA-AATAAATCATGCGAAATTAA----------------------------ATATAT--------GAATAATATAT-------TA--T------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAA
droEre2 scaffold_4845:11425854-11426117 - ACGAG-GA--AAAACGAAAAGAAAA-----CA--------AAAA----------------------------------AAT-GAAAACTTACCTGTAAGTTAA-TGCAAAATACAC--------------------------A----------CACACAGACAGACAAC-------------C--GAC--TCTCTGCGTGTGT--GGGTG------------------TGTATGCG-ACTTTTCTATTTAAGTAAGTTTTAAGCGA--------------------CAAA-AA--------------------------------------------CCAACA-------------------------------A---AAATATCAAATATAA-TT------GCA-AATAAATCATGCGAAATTTA----------------------------ATATAT------ATAAATAATATAT-------TA--T------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAA
droYak3 2R:11905436-11905702 + ACAAG-GA--AAAACGAAAAGAAAA-----CAA-------AAAA----------------------------------AAT-GAAAACTTACCTGTAAGTTAA-TGCAGAATACAC--------------------------A----------CACACAGACAGACAAC-------------C--GAC--TCTCTGCGTGTGT--GGGTG----------------TGTGTATGCG-ACTTTTCTATTTAAGTAAGTTTTAAGCGA--------------------CAAA-AA--------------------------------------------CAAACA-------------------------------A---AAATATCAAATATAA-TT------GCA-AATAAATCATGCGAAATTTA----------------------------ATATAT------ATAAATAATATAT-------TA--T------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAA
droEug1 scf7180000409474:660251-660536 + TCGAAAGA--AAAA----------------CAAAAA------ACATAAAA-AA-GGAAGAGAAA-AAT-GAAAAA---AAT-GAAAACTTACCTGTAAGTTAA-TGCAAGATACAC--------------------------A----------CACACAGACAGGCAAA-------------T-GAAC--TCTCTGCGTGTGTGTGGGTG----------------TGTGTATGCG-ACTTTTCTAATTAAGTAAGTTTTAAGCGA--------------------CAAA-AA--------------------------------------------CAAACA-------------------------------A---GAATATCAAATATAA-TT------GCA-AATAAATGATGCAAAATTTA----------------------------ATATAT--------AAATAATATAT-------TA--T------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAA
droBia1 scf7180000302143:1118883-1119131 + ACAAA---------------------------------AAAAGA----------------------------------ATT-GAAAACTTACCTGTAAGTTAA-AGCAAAATACAC--------------------------A----------CACACAGACGGACAAG-------------C--GTA--TCTCTGCGTGTGT--GGGTG----------------TGTGTATGCG-ACCTTTCTAATTAAGTAAGTTTTAAGCGA--------------------CAGA-AG--------------------------------------------GAAACA-------------------------------A---AAATATCAAATATAA-AT------GCA-AATAAATCAAGCGAAATTTA----------------------------ATATAT--------AAATAATATAT-------TATAT------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCAAATTAA
droTak1 scf7180000415722:181657-181916 - AGAAA-T-------------------GAAACAAA-----AAAAA----------------------------------ATT-GAAAACTTACCTGTAAGTTAA-TGCAAAATAG------------------ACA--C----A----------CACACAGACAGACAAC-------------C--GACTCTCTCTGCGTGTGT--GGGTG----------------TGTGTATGCG-ACTTTTCTAATTAAGTAAGTTTTAAGCGA--------------------CAAA-AA----------------------------------------A---CCAACA-------------------------------A---AAATATCAAATATAA-TT------GCA-AATAAATCATGCGAAATTTA----------------------------ATATAT--------AAATAATATAT-------TA--T------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAA
droEle1 scf7180000491232:85013-85273 + ACGAAACA--AAAA----------------CAAAA---AAAAAA----------------------------------AGG-AAAAACTTACCTGTAAGTTAA-TGCAA--TACAC----------------ACA--C----A----------CACACAGACAAACAAT-------------C--GAC--TCTCTGCGTGTGT--GAGTG----------------TGTGTATGCG-ACTTTTCTAATTAAGTAAGTTTTAAGAGA--------------------CAAA-AA--------------------------------------------CAAACA-------------------------------A---AAATATCAAATATAA-TT------GCA-AATAAATCATGCAAAATTTA----------------------------ATATAT--------AAATAATATAT-------TA--T------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAA
droRho1 scf7180000758652:767-1021 - ACAAAAGA--AAAA----------------CAAA------AAAA----------------------------------ATT-GAAAACTTACCTGTAAGTTAA-TGCAAAATACAC--------------------------A----------CACACAGACAAACAAC-------------C--GAC--TCTCTGCGTGTGT--GGGTG------------------TGTTTGCA-ACTTTTCTAATTAAGTAAGTTTTAAGCGA--------------------CAAA-AA--------------------------------------------CCAACAA------------------------------A---AAATATCAAATATAA-TT------GCA-AATAAATCATGCAAAATTTA----------------------------ATATAT--------AAATAATATAT-------TA--T------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAA
droFic1 scf7180000453201:291921-292184 + ACTCA-------AA----------------CAAAAAACAAAAAA----------------------------------ATT-AAAAACTTACCTGTAAGTTAA-GGCAAACAACAC----------------ACA--C----A----------CACACAGCCAGACAAC-------------C--GAC--TTTCTGCGTGTGTGTGCGTG----------------TATGTATGCA-ACTTTTCTAATTAAGTAAGTTTTAAGCGA--------------------GAAA-AA--------------------------------------------CAAACAA------------------------------A---AAATATCAAATATAA-TT------GCA-AATAAATCATGCGAAATTTA----------------------------ATATAT--------AAATAATATAT-------TA--T------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAA
droKik1 scf7180000302411:526977-527249 - ACAAA-AGGAAAAA------GAAAAC-AAACAAA------AAAA-----------------------------A----ATTAGAAAACTTACCTGTAAGTTAA-TGCAAAATAT------------------GCA--C----A----------CACACAGACGGACAGG-------------T--GACTCTCTCTGCGTGTGT--GTGTG------------------TGTGTGTG-ACTTTTCTAATTAAGTAAGTTTTAAGCGA--------------------GAAA-AA--------------------------------------------CAAACG-------------------------------G---AAATATCAAATATAAATT------GCA-AGTAAATCATGCGAAATTTA----------------------------ATATAT------ATAAATAATATAT-------TA--T------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAA
droAna3 scaffold_13266:5094326-5094629 - ACGAA-------AA----------------CTAAA-----AGGA----------------------------------AAG-GAAAACTTACCTATAAGTTTA-TGCAAAA-AG------------------GCA--T----A----------CACAT-GACAGACAAG-------------A-CGAT--TCTCTGCGTGTGT--GGATG----------------TGTGTATGCA-AATTTTCTAATTAAGTAAGTTTTAAGCGA--------------------CAAA-AACAA----AGGCAAAAAAAAAC-AAAAACAAAATGCAAAAAAAATCAAACA-------------------------------A---AAATATCAAGTATAA-TT------GCA-ATGAAATCATGCGAAATTGA----------------------------ATATAT--------AAATAATATAT-------TA--TATATATATAAAATTATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAA
droBip1 scf7180000395751:901353-901646 - ACGAA-GA----------------------------------AA----------------------------------ATG-AAAAACTTACCTGTAAGTTAA-AAAAA--AGCAT--------------------------A----------CACATTGTCGGACAAA-------------A-CGAT--TCTCTGCGTGAGT--GGATG----------------TGTGTATGCA-AATTTTCTAATTAAGTAAGTTTTAAGCAA--------------------CAACAAACAA----AAAAAACAAAAAACGAAAAACAAAATGGAAAAAA---CAAACA-------------------------------A---AAATATCAAGTATAA-TT------GCA-ATGAAATCATGCGAAATTTA----------------------------ATATAT--------AAATAATATAT-------TA--TATATATATAAATATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAA
dp5 3:15553023-15553247 - CGAGA-G-----------------------------GAAAATAA----------------------------------ATT-CAGAACTTACCTGTAAGCTAA-TGCCGGA--------------------------------------------------CGGATAAC-------------G--GA-----------------------------------------GGAGGGCG-ACTTTTCTAATTAAGTACATTTTAAGCGA--------------------CGAA-AA--------------------------------------------CAAAAGG------------------------------AACCCAATATCAAATATGA-ATGGAAACGCA-CGCAAATCGTGCGAAGTCTA----------------------------ATATAT--------AATTAATATAT-------AT--T------------ATATGCATAGTGA------------------------------------AACCAATATAAGGGCGGGAAAAATTAAGCGAATTAA
droPer2 scaffold_4:3494595-3494819 + CGAGA-G-----------------------------GAAAATAA----------------------------------ATT-CAGAACTTACCTGTAAGCTAA-TGCCGGA--------------------------------------------------CGGATAAC-------------G--GA-----------------------------------------AGAGGGCG-ACTTTTCTAATTAAGTACATTTTAAGCGA--------------------CGAA-AA--------------------------------------------CAAAAGG------------------------------AACCCAATATCAAATATGA-ATGGAAACGCA-CGCAAATCGTGCGAAGTCTA----------------------------ATATAT--------AATTAATATAT-------AT--T------------ATATGCATAGTGA------------------------------------AACCAATATAAGGGAGGGAAAAATTAAGCGAATTAA
droWil2 scf2_1100000004510:1557104-1557447 - ACAAA-AA----------------------------------AAATGATAGAATGCA--AGAAA-CACTGGAAAAAATTCT-TCAAACTTACCTGTAAGTTAA-AGCAATGCGCACACACACATACATACGT--ACCCACACGCACACACACATACACACACACACATCACGAATGCAGATGC--AAGTGTGTGTGCGTGTGT--GTGTGTGTGAATGTATGTGAGTGGGTGGGCC-AGTTTTATAATTAAGTAAGTTTTAAGCAA--------------------AA-CA-A---CAACATAAAACAAAAAACG-----------------------TAAAA-------------------------------A---AAATATCAAACAAAA-T----------------------------CTATA--------------------------ATATAT--------ATAT---ATGTGAATCGATATAT------------ATACGAATAGTGA------------------------------------AACCATTATAAGGGCGGGCAAAATTAAGCAAATTA-
droVir3 scaffold_12875:17972929-17973291 + AGAAA------------------------------------------------------------ATTCGGAAAA---TTT-TCAAACTTACCTGTAAGTTAAATGCGTCA--CAC----ACCC----------AACCACCCACACACACACACACACATACATACAAC-------------AAGCAG--TGTGTGCGTGCGT--GCGTGCGTGCGTGCGTGCGTGTGTGTGTGCAAACTTTTCTAATTAAGTAAGTTTTAAGCAAATTGTGTAATACAACAACAACAGCA-A---C--------------------------------------------AAC------------------------------AACAAAATATCAAATATTA-T-ATACAAGCAAAGTAAATCATGCGAAATTTA----------------------------ATATATAAACA---AAATTATATAT-------A---------AATAAATATATAAATAGTGAAGAAAAAAAAAAAAAACAAAATTAAAAGAAAACA-AAACCATTATAAGGGCGGGCAAAATTAAGCAAATTAA
droMoj3 scaffold_6496:11601131-11601465 + ATAAA-CA------------------------GAA---AAGAAA---------------------ATTCGGAAAA---TTT-TCAAACTTACCTGTAAGTTAAATGCGACA--CAC----ACCC----------ACATACACG----------CACACACACAGGCA---------------C--ATT--TCGCTGTGTGTGTGTGTGCA----------------TGTGTGTGCAAACTTTTCTAATTAAGTAAGTTTTAAGCAAATTGTGTAATACAACAGCAACAAA-AA--------------------------------------------CA-ACA-----------------------------------AGATATCAAATACTA-T-ATAAAAGCAAATTAAATCATGCGAAATTTATAATA----ACAAAAACAAGAAA-----TTATATAAATATATATAT---AT----------------ATATATAAATATATAAATAGTGACAAA----------------------------AAAAAAACAATATAAGGGCGGGCAAAATTAAGCAAATTAA
droGri2 scaffold_15245:13721478-13721853 - AGAAA-AA--GAAA----------------CAAAAA------AA-----A-AA-ACAAAATAAAAATTGGGAAAA---AAT-TCGAACTTACCTGTAAGTTAA-ACGTG--TCCAC----------------ACA--C----T----------TACACACACACACA-C-------------T--GTA--TGTGTTTGTGTGT--GTGTT----------------TGTGTGTGCCAACTTTTCTAATTAAGTAAGTTTTAAGCGAATTGTGTAATACAACAACAACAACA-A---C--------------------------------------------AACATCAAAACAAAAACAAAAACAAAAACCGAGA---AAATATCAAATACTA-T-ATAAAACAA-AGTAAATCATGCGAAATTTAACATAAAAAACAAAAACAAAAATTAATAGTATAT------ATAAA-AATATAT--------------ATATATAAATATATAAATAGTAA------------------------------AACAAAAACCAATATAAGGGCGGGCAAAATTAAGCAAATTAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACGAG-GA--AAAACGAAAAGGAAACAAAACAAA------AAAA----------------------------------AAG-GAAAACTTACCTGTAAGTTAA-TGCAAAATACAC--------------------------A------------------------------------------------CTCTGCGTATGT--GGGTG----------------TGTGTACGCG-ACTTTTCTATTTAAGTAAGTTTTAAGCGA--------------------CAAA-AA--------------------------------------------CAAACA-------------------------------A---AAATATCAAATATAA-TT------GCA-AATAAATCATGCGAAATTTA----------------------------ATATAT--------AAATAATATAT-------TA--T------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGGGCGGGCAAAATTAAGCGAAT...2712.00200000000110000000
...............................................................................................................TACAC--------------------------A------------------------------------------------CTCTGCGTATGT--GGGTG----------------TGT.......................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
..............................................................................................................ATACAC--------------------------A------------------------------------------------CTCTGCGTATGT--GGGT...........................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGA------------------------------------AACCAATATAAGGGCGGGCA................2611.00100000001000000000
........................................................................................TTACCTGTAAGTTAA-TGCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGGCGGGCAAAATTAAGCGAAT...2511.00100000000000010000
ACGAG-GA--AAAACGAAAAGGAAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000010000000
...............................................................................................................................................................................................CTCTGCGTATGT--GGGTG----------------TGT.......................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................AAATATCAAATATAA-TT------GCA-AATAAA................................................................................................................................................................................2611.00100000000010000000
..................................................................................................................................................................................................TGCGTATGT--GGGTG----------------TGTGTACGCG-ACT............................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGTGA------------------------------------AACCAATATAAGGGCGGGC.................2711.00101000000000000000
........................................AAAA----------------------------------AAG-GAAAACTTACCTGTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
........................................................................................TTACCTGTAAGTTAA-TGCAAAATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................A-AATAAATCATGCGAAATT....................................................................................................................................................................1911.00100000000000100000
..........................................................................................................CAAAATACAC--------------------------A------------------------------------------------CTCTGCGTATGT--GGGT...........................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
......................................................................................................................................................................................................................................TACGCG-ACTTTTCTATTTAAG................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAATAGTGA------------------------------------AACCAATATAAGGGC.....................2711.00100000001000000000
................................................................................................................................................................................................TCTGCGTATGT--GGGTG----------------TGT.......................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT--------AAATAATATAT-------TA--T------------A....................................................................................1930.33100001000000000000
..............................................................................AAG-GAAAACTTACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.10200000002000000000
droSec2
ACGAG-GA--A-AACGAAAAGGAAACAAAACAAAA----AAAAA----------------------------------AAG-GAAAACTTACCTGTAAGTTAA-TGCAAAATACAC--------------------------A------------------------------------------------CTCTGCGTATGT--GGGTG----------------TGTGTACGCG-ACTTTTCTATTTAAGTAAGTTTTAAGCGA--------------------CAAA-AA--------------------------------------------CAAACA-------------------------------A---AAATATCAAATATAA-TT------GCA-AATAAATCATGCGAAATTTA----------------------------ATATAT--------AAATAATATAT-------TA--T------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................CTCTGCGTATGT--GGGTG----------------TGT.......................................................................................................................................................................................................................................................................................................................................................................2013.0031011
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------AACCAATATAAGGGCGGGC.................2011.0011000
..............................................................................................................................................A------------------------------------------------CTCTGCGTATGT--GGGTG----------------TGT.......................................................................................................................................................................................................................................................................................................................................................................2111.0010100
...................................................................................................TTAA-TGCAAAATACAC--------------------------A------------------------------------------------CTCTGCGTA....................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
..............................................................................................................................................A------------------------------------------------CTCTGCGTATGT--GGGTG----------------TGTGTACGC.................................................................................................................................................................................................................................................................................................................................................................2711.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATAGTGA------------------------------------AACCAATATAA.........................2111.0011000
......................................................................................................................................................................................................................................................................................................................................................................................................................AATAAATCATGCGAAATTTA----------------------------ATAT..................................................................................................................................2411.0010010
....................................................................................................................................................................................................................................................TATTTAAGTAAGTTTTAAGC....................................................................................................................................................................................................................................................................................................................................2011.0010010
..................................................................................................................AC--------------------------A------------------------------------------------CTCTGCGTATGT--GGGTG----------------TGT.......................................................................................................................................................................................................................................................................................................................................................................2311.0010100
dm3
ACGAG-GA--AAAA----------------CAAAAA--AAAAAA----------------------------------AAG-GAAAACTTACCTGTAAGTTAA-TGCAAAATACAC--------------------------A------------------------------------------------CTCTGCGTATGT--GGGTG----------------TGTGTACGCG-ACTTTTCTATTTAAGTAAGTTTTAAGCGA--------------------CAAA-AA--------------------------------------------CAAACA-------------------------------A---AAATATCAAATATAA-TT------GCA-AATAAATCATGCGAAATTAA----------------------------ATATAT--------GAATAATATAT-------TA--T------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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droEre2
ACGAG-GA--AAAACGAAAAGAAAA-----CA--------AAAA----------------------------------AAT-GAAAACTTACCTGTAAGTTAA-TGCAAAATACAC--------------------------A----------CACACAGACAGACAAC-------------C--GAC--TCTCTGCGTGTGT--GGGTG------------------TGTATGCG-ACTTTTCTATTTAAGTAAGTTTTAAGCGA--------------------CAAA-AA--------------------------------------------CCAACA-------------------------------A---AAATATCAAATATAA-TT------GCA-AATAAATCATGCGAAATTTA----------------------------ATATAT------ATAAATAATATAT-------TA--T------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................AAC-------------C--GAC--TCTCTGCGTGTGT--GGGTG------------------TGT.....................................................................................................................................................................................................................................................................................................................................................................2818.0080000008
..................................................................................................................................................................AGACAAC-------------C--GAC--TCTCTGCGTGT...................................................................................................................................................................................................................................................................................................................................................................................................2212.0021000010
...................................................................................................................................................................GACAAC-------------C--GAC--TCTCTGCGTGTGT--GGGT...........................................................................................................................................................................................................................................................................................................................................................................................2712.0020000110
......................................................................................................................................................................................C--GAC--TCTCTGCGTGTGT--GGGT...........................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
...................................................................................................................................................................GACAAC-------------C--GAC--TCTCTGCGTGT...................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
ACGAG-GA--AAAACGAAAAGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
..........................................................................................................................................................................................AC--TCTCTGCGTGTGT--GGGG...........................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
...................................................................................................................................................................GACAAC-------------C--GAC--TCTCTGCGTGTGT--GGG............................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
.....................................................................................................................................................................CAAC-------------C--GAC--TCTCTGCGTGT...................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
.......................................................................................................................................................................................................................................ATGCG-ACTTTTCTATTTAAGTAAGT...........................................................................................................................................................................................................................................................................................................................................2511.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAATAGTGA------------------------------------AACCAATATAAGGGC.....................2611.0010000010
...............................................................................................................................................................................................................................................................GTTTTAAGCGA--------------------CAAA-AA--------------------------------------------CCAAC......................................................................................................................................................................................................................................................2211.0011000000
.....................................................................................................................................................................................................................................GTATGCG-ACTTTTCTATTTAAGTA..............................................................................................................................................................................................................................................................................................................................................2411.0010000010
.........................................................................................................................................................................................GAC--TCTCTGCGTGTGT--GGGTG------------------T.......................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
......................................................................................................................................................................................................TGTGT--GGGTG------------------TGTATGCG-ACTTTTC........................................................................................................................................................................................................................................................................................................................................................2511.0011000000
..............................................................................................................................................................................................TCTCTGCGTGTGT--GGGTG------------------TGTA....................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
......................................................................................................................................................................AAC-------------C--GAC--TCTCTGCGTGTGT--GG.............................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
..................................................................................................................................................................AGACAAC-------------C--GAC--TCTCTGCGTGTGT--G..............................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
....................................................................................................TAA-TGCAAAATACAC--------------------------A----------CACACAGACAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
......................................................................................................A-TGCAAAATACAC--------------------------A----------CACACAGACAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATAAGGGCGGGCAAA..............1811.0011000000
.................................................................................................................................................................CAGACAAC-------------C--GAC--TCTCTGCGTGT...................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
.........................................AAA----------------------------------AAT-GAAAACTTACCTGTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
..................................................................................................................................................................AGACAAC-------------C--GAC--TCTCTGCGTGTGT--GGGT...........................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
droYak3
ACAAG-GA--AAAACGAAAAGAAAA-----CAA-------AAAA----------------------------------AAT-GAAAACTTACCTGTAAGTTAA-TGCAGAATACAC--------------------------A----------CACACAGACAGACAAC-------------C--GAC--TCTCTGCGTGTGT--GGGTG----------------TGTGTATGCG-ACTTTTCTATTTAAGTAAGTTTTAAGCGA--------------------CAAA-AA--------------------------------------------CAAACA-------------------------------A---AAATATCAAATATAA-TT------GCA-AATAAATCATGCGAAATTTA----------------------------ATATAT------ATAAATAATATAT-------TA--T------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................CTCTGCGTGTGT--GGGTG----------------TGTGTATG..................................................................................................................................................................................................................................................................................................................................................................2519.00900000000009
...................................................................................................................................................................GACAAC-------------C--GAC--TCTCTGCGTGTGT--GGGT...........................................................................................................................................................................................................................................................................................................................................................................................2712.00200000020000
......................................................................................................................................................................AAC-------------C--GAC--TCTCTGCGTGTGT--GGGTG----------------T.........................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
...............................................................................................................................................................GACAGACAAC-------------C--GAC--TCTCTGCGTGC...................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
................................................................................................................................................................................................................................................TTTCTATTTAAGTAAGTTTTAAGCGA--------------------CA............................................................................................................................................................................................................................................................................................................2811.00100000010000
...............................................................................................................TACAC--------------------------A----------CACACAGACAGACAAC-------------C--GAC--TC............................................................................................................................................................................................................................................................................................................................................................................................................2811.00110000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGGCGGGCAAAATTAAGCGAATTA.2811.00100000010000
.............................................................................................................................................................CAGACAGACAAC-------------C--GAC--TCTCTGC.......................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000
..............................................................................................................................................................................................TCTCTGCGTGTGT--GGGTG----------------T.........................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.........................................................................................................................................................................................................GT--GGGTG----------------TGTGTATGCG-ACT............................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
............................................................................................................GAATACAC--------------------------A----------CACACAGACAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...................................................................................................................................................................GACAAC-------------C--GAC--TCTCTGCGTGT...................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.....................................................................................................................................................................CAAC-------------C--GAC--TCTCTGCGTGTGT--GGGTG----------------T.........................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
........................................................................................................................................................................C-------------C--GAC--TCTCTGCGTGTGT--GGG............................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGCAAAATTAAGCGAATT..2111.00101000000000
droEug1
TCGAAAGA--AAAA----------------CAAAAA------ACATAAAA-AA-GGAAGAGAAA-AAT-GAAAAA---AAT-GAAAACTTACCTGTAAGTTAA-TGCAAGATACAC--------------------------A----------CACACAGACAGGCAAA-------------T-GAAC--TCTCTGCGTGTGTGTGGGTG----------------TGTGTATGCG-ACTTTTCTAATTAAGTAAGTTTTAAGCGA--------------------CAAA-AA--------------------------------------------CAAACA-------------------------------A---GAATATCAAATATAA-TT------GCA-AATAAATGATGCAAAATTTA----------------------------ATATAT--------AAATAATATAT-------TA--T------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAASizeHit CountTotal NormTotal
No Reads
droBia1
ACAAA---------------------------------AAAAGA----------------------------------ATT-GAAAACTTACCTGTAAGTTAA-AGCAAAATACAC--------------------------A----------CACACAGACGGACAAG-------------C--GTA--TCTCTGCGTGTGT--GGGTG----------------TGTGTATGCG-ACCTTTCTAATTAAGTAAGTTTTAAGCGA--------------------CAGA-AG--------------------------------------------GAAACA-------------------------------A---AAATATCAAATATAA-AT------GCA-AATAAATCAAGCGAAATTTA----------------------------ATATAT--------AAATAATATAT-------TATAT------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCAAATTAASizeHit CountTotal NormTotal
No Reads
droTak1
AGAAA-T-------------------GAAACAAA-----AAAAA----------------------------------ATT-GAAAACTTACCTGTAAGTTAA-TGCAAAATAG------------------ACA--C----A----------CACACAGACAGACAAC-------------C--GACTCTCTCTGCGTGTGT--GGGTG----------------TGTGTATGCG-ACTTTTCTAATTAAGTAAGTTTTAAGCGA--------------------CAAA-AA----------------------------------------A---CCAACA-------------------------------A---AAATATCAAATATAA-TT------GCA-AATAAATCATGCGAAATTTA----------------------------ATATAT--------AAATAATATAT-------TA--T------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAASizeHit CountTotal NormTotal
No Reads
droEle1
ACGAAACA--AAAA----------------CAAAA---AAAAAA----------------------------------AGG-AAAAACTTACCTGTAAGTTAA-TGCAA--TACAC----------------ACA--C----A----------CACACAGACAAACAAT-------------C--GAC--TCTCTGCGTGTGT--GAGTG----------------TGTGTATGCG-ACTTTTCTAATTAAGTAAGTTTTAAGAGA--------------------CAAA-AA--------------------------------------------CAAACA-------------------------------A---AAATATCAAATATAA-TT------GCA-AATAAATCATGCAAAATTTA----------------------------ATATAT--------AAATAATATAT-------TA--T------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAASizeHit CountTotal NormTotal
No Reads
droRho1
ACAAAAGA--AAAA----------------CAAA------AAAA----------------------------------ATT-GAAAACTTACCTGTAAGTTAA-TGCAAAATACAC--------------------------A----------CACACAGACAAACAAC-------------C--GAC--TCTCTGCGTGTGT--GGGTG------------------TGTTTGCA-ACTTTTCTAATTAAGTAAGTTTTAAGCGA--------------------CAAA-AA--------------------------------------------CCAACAA------------------------------A---AAATATCAAATATAA-TT------GCA-AATAAATCATGCAAAATTTA----------------------------ATATAT--------AAATAATATAT-------TA--T------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAASizeHit CountTotal NormTotal
No Reads
droFic1
ACTCA-------AA----------------CAAAAAACAAAAAA----------------------------------ATT-AAAAACTTACCTGTAAGTTAA-GGCAAACAACAC----------------ACA--C----A----------CACACAGCCAGACAAC-------------C--GAC--TTTCTGCGTGTGTGTGCGTG----------------TATGTATGCA-ACTTTTCTAATTAAGTAAGTTTTAAGCGA--------------------GAAA-AA--------------------------------------------CAAACAA------------------------------A---AAATATCAAATATAA-TT------GCA-AATAAATCATGCGAAATTTA----------------------------ATATAT--------AAATAATATAT-------TA--T------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAASizeHit CountTotal NormTotal
No Reads
droKik1
ACAAA-AGGAAAAA------GAAAAC-AAACAAA------AAAA-----------------------------A----ATTAGAAAACTTACCTGTAAGTTAA-TGCAAAATAT------------------GCA--C----A----------CACACAGACGGACAGG-------------T--GACTCTCTCTGCGTGTGT--GTGTG------------------TGTGTGTG-ACTTTTCTAATTAAGTAAGTTTTAAGCGA--------------------GAAA-AA--------------------------------------------CAAACG-------------------------------G---AAATATCAAATATAAATT------GCA-AGTAAATCATGCGAAATTTA----------------------------ATATAT------ATAAATAATATAT-------TA--T------------ATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAASizeHit CountTotal NormTotal
No Reads
droAna3
ACGAA-------AA----------------CTAAA-----AGGA----------------------------------AAG-GAAAACTTACCTATAAGTTTA-TGCAAAA-AG------------------GCA--T----A----------CACAT-GACAGACAAG-------------A-CGAT--TCTCTGCGTGTGT--GGATG----------------TGTGTATGCA-AATTTTCTAATTAAGTAAGTTTTAAGCGA--------------------CAAA-AACAA----AGGCAAAAAAAAAC-AAAAACAAAATGCAAAAAAAATCAAACA-------------------------------A---AAATATCAAGTATAA-TT------GCA-ATGAAATCATGCGAAATTGA----------------------------ATATAT--------AAATAATATAT-------TA--TATATATATAAAATTATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................TGCGTGTGT--GGATG----------------TGTGTATGCA-...............................................................................................................................................................................................................................................................................................................................................................2417.007000007
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGTGA------------------------------------AACCAATATAAGGGC.....................2312.002000002
...................................................................................................................................................................................................GCGTGTGT--GGATG----------------TGTGTATGCA-AAT............................................................................................................................................................................................................................................................................................................................................................2612.002000011
.............................................................................................................AA-AG------------------GCA--T----A----------CACAT-GACAGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
......................................................................................................................................................................AAG-------------A-CGAT--TCTCTGCGTGTGT--GGATG----------------T.........................................................................................................................................................................................................................................................................................................................................................................2711.001000010
.................................................................................................................................................................................................CTGCGTGTGT--GGATG----------------TGTGTATGCA-...............................................................................................................................................................................................................................................................................................................................................................2511.001100000
......................................................................................................................................................................................................TGTGT--GGATG----------------TGTGTATGCA-...............................................................................................................................................................................................................................................................................................................................................................2011.001000001
......................................................................................................................................................................................................TGTGT--GGATG----------------TGTGTATGC.................................................................................................................................................................................................................................................................................................................................................................1911.001000010
.................................................................................................................G------------------GCA--T----A----------CACAT-GACAGACAAG-------------A-C...................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
...................................................................................................................................................................GACAAG-------------A-CGAT--TCTCTGCGTGTGT--...............................................................................................................................................................................................................................................................................................................................................................................................2411.001001000
.......................................................................................................................................................................................................................................................................................................................................................................................................AA-TT------GCA-ATGAAATCATGC..........................................................................................................................................................................1911.001010000
..........................................................................................................................................................................................AT--TCTCTGCGTGTGT--GGATG----------------TGT.......................................................................................................................................................................................................................................................................................................................................................................2311.001000010
......................................................................................................................................................................................A-CGAT--TCTCTGCGTGTGT--GGAT...........................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
................................................................................................................................................................................................................................................................................................................AAAAAAAAAC-AAAAACAAAA.......................................................................................................................................................................................................................................................................20200.051010000
droBip1
ACGAA-GA----------------------------------AA----------------------------------ATG-AAAAACTTACCTGTAAGTTAA-AAAAA--AGCAT--------------------------A----------CACATTGTCGGACAAA-------------A-CGAT--TCTCTGCGTGAGT--GGATG----------------TGTGTATGCA-AATTTTCTAATTAAGTAAGTTTTAAGCAA--------------------CAACAAACAA----AAAAAACAAAAAACGAAAAACAAAATGGAAAAAA---CAAACA-------------------------------A---AAATATCAAGTATAA-TT------GCA-ATGAAATCATGCGAAATTTA----------------------------ATATAT--------AAATAATATAT-------TA--TATATATATAAATATATAAATAGTGA------------------------------------AACCAATATAAGGGCGGGCAAAATTAAGCGAATTAASizeHit CountTotal NormTotal
No Reads
dp5
CGAGA-G-----------------------------GAAAATAA----------------------------------ATT-CAGAACTTACCTGTAAGCTAA-TGCCGGA--------------------------------------------------CGGATAAC-------------G--GA-----------------------------------------GGAGGGCG-ACTTTTCTAATTAAGTACATTTTAAGCGA--------------------CGAA-AA--------------------------------------------CAAAAGG------------------------------AACCCAATATCAAATATGA-ATGGAAACGCA-CGCAAATCGTGCGAAGTCTA----------------------------ATATAT--------AATTAATATAT-------AT--T------------ATATGCATAGTGA------------------------------------AACCAATATAAGGGCGGGAAAAATTAAGCGAATTAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................ATTTTAAGCGA--------------------CGAA-AA--------------------------------------------CAAAAGG------------------------------......................................................................................................................................................................................................................2411.0010000001000
.........................................................................................TACCTGTAAGCTAA-TGCCGGA--------------------------------------------------CGG........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
......................................................................................................A-TGCCGGA--------------------------------------------------CGGATAAC-------------G--GA-----------------------------------------GGAGGGC.................................................................................................................................................................................................................................................................................................................................................................2611.0010000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................A-CGCAAATCGTGCGAAGTCTA----------------------------AT....................................................................................................................................2311.0010000100000
....................................................................................................................................................................................................................................................TAATTAAGTACATTTTAAGCG...................................................................................................................................................................................................................................................................................................................................2111.0010000001000
..................................................................................................................................................................................................................................................................TTAAGCGA--------------------CGAA-AA--------------------------------------------CAAAAGG------------------------------AACCCA................................................................................................................................................................................................................2711.0010100000000
.....................................................................................................................................................................................................................................................................AGCGA--------------------CGAA-AA--------------------------------------------CAAAAGG------------------------------AACCCAATA.............................................................................................................................................................................................................2711.0010000001000
............................................................................................................................................................................................................................................................TACATTTTAAGCGA--------------------CGAA-AA--------------------------------------------C..........................................................................................................................................................................................................................................................2111.0010000000001
....................................................................................................TAA-TGCCGGA--------------------------------------------------CGGATAAC-------------G--GA-----------------------------------------GGAGGGC.................................................................................................................................................................................................................................................................................................................................................................2811.0010000000001
................................................................................................AAGCTAA-TGCCGGA--------------------------------------------------CGGATAAC-------------G--...................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...................................................................................................................................................................................................................................................................................................................................................AAAGG------------------------------AACCCAATATCAAATA......................................................................................................................................................................................................2111.0010001000000
........................................................................................................TGCCGGA--------------------------------------------------CGGATAAC-------------G--GA-----------------------------------------GGAGGGCG-...............................................................................................................................................................................................................................................................................................................................................................2611.0010000000010
......................................................................................................................................................................AAC-------------G--GA-----------------------------------------GGAGGGCG-ACTT...........................................................................................................................................................................................................................................................................................................................................................1811.0010000010000
...........................................................................................................CGGA--------------------------------------------------CGGATAAC-------------G--GA-----------------------------------------GGAGG...................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................CAATATCAAATATGA-ATGGA.............................................................................................................................................................................................2011.0010100000000
.........................................................................................................GCCGGA--------------------------------------------------CGGATAAC-------------G--GA-----------------------------------------GGAGGGC.................................................................................................................................................................................................................................................................................................................................................................2411.0010000000001
..................................................................................................................................................................................................................................................................TTAAGCGA--------------------CGAA-AA--------------------------------------------CAAAAGG------------------------------AAC...................................................................................................................................................................................................................2411.0010000000001
............................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGCGAAGTCTA----------------------------ATATAT--------AAT.....................................................................................................................2311.0010000001000
.......................................................................................................................................................................AC-------------G--GA-----------------------------------------GGAGGGCG-ACTTTTC........................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
droPer2
CGAGA-G-----------------------------GAAAATAA----------------------------------ATT-CAGAACTTACCTGTAAGCTAA-TGCCGGA--------------------------------------------------CGGATAAC-------------G--GA-----------------------------------------AGAGGGCG-ACTTTTCTAATTAAGTACATTTTAAGCGA--------------------CGAA-AA--------------------------------------------CAAAAGG------------------------------AACCCAATATCAAATATGA-ATGGAAACGCA-CGCAAATCGTGCGAAGTCTA----------------------------ATATAT--------AATTAATATAT-------AT--T------------ATATGCATAGTGA------------------------------------AACCAATATAAGGGAGGGAAAAATTAAGCGAATTAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................TAAC-------------G--GA-----------------------------------------AGAGGGCG-ACTT...........................................................................................................................................................................................................................................................................................................................................................1913.003300000
........................................................................................................................................................................................................................................................TAAGTACATTTTAAGCGA--------------------C.............................................................................................................................................................................................................................................................................................................1912.002200000
........................................................................................TTACCTGTAAGCTAA-TGCCGGA--------------------------------------------------CGGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
...................................................................................................................................................................GATAAC-------------G--GA-----------------------------------------AGAGGGCG-ACT............................................................................................................................................................................................................................................................................................................................................................2012.002200000
........................................................................................................................................................................................................................................................TAAGTACATTTTAAGCGA--------------------CGA...........................................................................................................................................................................................................................................................................................................2111.001001000
.............................................................................................TGTAAGCTAA-TGCCGGA--------------------------------------------------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.....................................................................................AACTTACCTGTAAGCTAA-TGCCGGA--------------------------------------------------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.........................................................................................TACCTGTAAGCTAA-TGCCGGA--------------------------------------------------CGGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................TATGA-ATGGAAACGCA-CGCA..................................................................................................................................................................................2011.001000010
..................................................................................................................................................................GGATAAC-------------G--GA-----------------------------------------AGAGGGCG-A..............................................................................................................................................................................................................................................................................................................................................................1911.001000001
..................................................................................................GCTAA-TGCCGGA--------------------------------------------------CGGATAAC-------------G--GA-----------------------------------------AG......................................................................................................................................................................................................................................................................................................................................................................2511.001001000
.....................................................................................................................................................................TAAC-------------G--GA-----------------------------------------AGAGGGCG-ACT............................................................................................................................................................................................................................................................................................................................................................1811.001100000
.......................................AATAA----------------------------------ATT-CAGAACTTACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.GAGA-G-----------------------------GAAAATAA----------------------------------ATT-CAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
droWil2
ACAAA-AA----------------------------------AAATGATAGAATGCA--AGAAA-CACTGGAAAAAATTCT-TCAAACTTACCTGTAAGTTAA-AGCAATGCGCACACACACATACATACGT--ACCCACACGCACACACACATACACACACACACATCACGAATGCAGATGC--AAGTGTGTGTGCGTGTGT--GTGTGTGTGAATGTATGTGAGTGGGTGGGCC-AGTTTTATAATTAAGTAAGTTTTAAGCAA--------------------AA-CA-A---CAACATAAAACAAAAAACG-----------------------TAAAA-------------------------------A---AAATATCAAACAAAA-T----------------------------CTATA--------------------------ATATAT--------ATAT---ATGTGAATCGATATAT------------ATACGAATAGTGA------------------------------------AACCATTATAAGGGCGGGCAAAATTAAGCAAATTA-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................GCA--AGAAA-CACTGGAAAAAATTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00220000
.....................................................................................................................................................................................................................GAATGTATGTGAGTGGGTGGGCC-AGTT...........................................................................................................................................................................................................................................................................................................................................................2712.00200200
..............................................................................................................................ATACGT--ACCCACACGCACACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
..............................................................................................................................................................................................................................TGAGTGGGTGGGCC-AGTTT..........................................................................................................................................................................................................................................................................................................................................................1911.00100100
...........................................................................................................................................................................................................................ATGTGAGTGGGTGGGCC-AGTTTT.........................................................................................................................................................................................................................................................................................................................................................2311.00100010
.....................................................................................................................................................................................................................GAATGTATGTGAGTGGGTGGGCC-AGTTT..........................................................................................................................................................................................................................................................................................................................................................2811.00100100
.........................................................................................................................CATACATACGT--ACCCACACGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
...................................................................................................................................................................................................................GTGAATGTATGTGAGTGGG......................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.....................................................................................................................................................................................................................GAATGTATGTGAGTGGGTGG...................................................................................................................................................................................................................................................................................................................................................................2011.00100100
...................................................................................................................................................................................................................GTGAATGTATGTGAGTGGGT.....................................................................................................................................................................................................................................................................................................................................................................2011.00100010
...............................................................................................................................................................................................................................GAGTGGGTGGGCC-AGTTT..........................................................................................................................................................................................................................................................................................................................................................1811.00100010
...................................................................................................................................................................................................................................................ATAATTAAGTAAGTTTTAAGC....................................................................................................................................................................................................................................................................................................................................2111.00100010
...........................................................................................................................TACATACGT--ACCCACACGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001
......................................................GCA--AGAAA-CACTGGAAAAAATTCT-..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000
.............................................................................................................................................................................ATGCAGATGC--AAGTGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGA------------------------------------AACCATTATAAGGGC.....................2011.00100001
................................................................................................AAGTTAA-AGCAATGCGCACAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.........................................................................................................GCAATGCGCACACACACATACATAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
...............................................................................................................................TACGT--ACCCACACGCACACACAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
.............................................................................................................................................................................................................................................AGTTTTATAATTAAGTAAGT...........................................................................................................................................................................................................................................................................................................................................2011.00100010
..............................................................................................GTAAGTTAA-AGCAATGCGCACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
...................................................................................................................................................................................ATGC--AAGTGTGTGTGCGTGTGT--GT.............................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
......AA----------------------------------AAATGATAGAATGCA--AGAAA-CACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100001
.....................................................................................................................................................................................................................GAATGTATGTGAGTGGGTGGGCC-A..............................................................................................................................................................................................................................................................................................................................................................2411.00100100
........................................................................................................................................................................CACGAATGCAGATGC--AAGT...............................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
....................................................................................................................................................................................TGC--AAGTGTGTGTGCGTGTGT--GT.............................................................................................................................................................................................................................................................................................................................................................................................2320.50100100
.....................................................................................................................................................................................GC--AAGTGTGTGTGCGTGTGT--GTGT...........................................................................................................................................................................................................................................................................................................................................................................................2440.50200110
..................................................................................................................................................................................................TGCGTGTGT--GTGTGTGTGAAT...................................................................................................................................................................................................................................................................................................................................................................................2160.33200002
....................................................................................................................................................................................TGC--AAGTGTGTGTGCGTGT...................................................................................................................................................................................................................................................................................................................................................................................................1940.25100010
........................................................................................................................................................................................................TGT--GTGTGTGTGAATGTATG..............................................................................................................................................................................................................................................................................................................................................................................2050.20101000
.....................................................................................................................................................................................GC--AAGTGTGTGTGCGTGTG..................................................................................................................................................................................................................................................................................................................................................................................................1950.20100100
.......................................................................................................................................................................................................GTGT--GTGTGTGTGAATGTAT...............................................................................................................................................................................................................................................................................................................................................................................2080.13101000
........................................................................................................................................................................................................TGT--GTGTGTGTGAATGTAT...............................................................................................................................................................................................................................................................................................................................................................................19100.10101000
droVir3
AGAAA------------------------------------------------------------ATTCGGAAAA---TTT-TCAAACTTACCTGTAAGTTAAATGCGTCA--CAC----ACCC----------AACCACCCACACACACACACACACATACATACAAC-------------AAGCAG--TGTGTGCGTGCGT--GCGTGCGTGCGTGCGTGCGTGTGTGTGTGCAAACTTTTCTAATTAAGTAAGTTTTAAGCAAATTGTGTAATACAACAACAACAGCA-A---C--------------------------------------------AAC------------------------------AACAAAATATCAAATATTA-T-ATACAAGCAAAGTAAATCATGCGAAATTTA----------------------------ATATATAAACA---AAATTATATAT-------A---------AATAAATATATAAATAGTGAAGAAAAAAAAAAAAAACAAAATTAAAAGAAAACA-AAACCATTATAAGGGCGGGCAAAATTAAGCAAATTAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................C----ACCC----------AACCACCCACACACAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................2123.006006000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................A-T-ATACAAGCAAAGTAAATCATGC..........................................................................................................................................................................2412.002000000000000000000002000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGGCGGGCAAAATT...........1811.001000000000000000100000000000000000000000000000000000000000000000
..............................................................................................GTAAGTTAAATGCGTCA--CAC----....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................ATACAAC-------------AAGCAG--TGTGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAACAAAATTAAAAGAAAACA-.....................................2411.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACA-AAACCATTATAAGGGCA....................2211.001000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-AAACCATTATAAGGGCGGGCA................2311.001000000000000000000000000001000000000000000000000000000000000000
.............................................................................................TGTAAGTTAAATGCGTCA--CAC----AC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000100000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TACAAGCAAAGTAAATCATGC..........................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-AAACCATTATAAGGGCGGG..................2111.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................ACAAC-------------AAGCAG--TGTGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000100000000000000000000000000000
.................................................................ATTCGGAAAA---TTT-TCAAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
.................................................................ATTCGGAAAA---TTT-TCAAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001000000000000000000000000000000000000000000000000000000000
..................................................................................................GTTAAATGCGTCA--CAC----ACCC----------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000100000000000000000000000000000
...........................................................................................CCTGTAAGTTAAATGCGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAAATAGTGAAGAAAA..................................................................1911.001000000000000000000000000000000000100000000000000000000000000000
...................................................................................................................C----ACCC----------AACCACCCACACACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2021.002002000000000000000000000000000000000000000000000000000000000000
...AA------------------------------------------------------------ATTCGGAAAA---TTT-TCAAACTTACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................CATACAAC-------------AAGCAG--TGTGTGCGT.....................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................ATCAAATATTA-T-ATACAAGC........................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................CAC----ACCC----------AACCACCCACACACACACAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................AAGCAG--TGTGTGCGTGCGT--GC.............................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGGCGGGCAAAATTAAG........2111.001000000000000000000000000000000100000000000000000000000000000000
....A------------------------------------------------------------ATTCGGAAAA---TTT-TCAAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................AACAAAATATCAAATATTA-T-ATACAAG.........................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAAATCATGCGAAATTTA----------------------------A.....................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TGCAAACTTTTCTAATTAAGT...............................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................ACCC----------AACCACCCACACACAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CC----------AACCACCCACACACACACACACACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2730.331001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAACAAAATTAAAA.............................................2230.331000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAACAAAATTAAAA.............................................2140.251000000000000001000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................CGTGCGTGCGTGCGTGCGTGTG........................................................................................................................................................................................................................................................................................................................................................................2290.111000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................AACCACCCACACACACACACACACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2590.111000000000000000000000000000000000000010000000000000000000000000
................................................................................................................................................................................................TGTGCGTGCGT--GCGTGCGTGC.....................................................................................................................................................................................................................................................................................................................................................................................21120.081000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................GTGCGTGCGTGCGTGTGT.......................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................GTGCGT--GCGTGCGTGCGTGC.................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................AACAACAACAGCA-A---C--------------------------------------------AAC------------------------------AAC...................................................................................................................................................................................................................21200.051000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................CAACAACAACAGCA-A---C--------------------------------------------AAC------------------------------AACA..................................................................................................................................................................................................................23200.051000000000000000000000000100000000000000000000000000000000000000
...............................................................................................................................................................................................GTGTGCGTGCGT--GCGTGCG........................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000010000000000000000000000000000000000000000000000
.................................................................................................................................................................................................GTGCGTGCGT--GCGTGCGTGC.....................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................GTGCGT--GCGTGCGTGCGTGCGTG..............................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................TACAACAACAACAGCA-A---C--------------------------------------------AAC------------------------------......................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................GT--GCGTGCGTGCGTGCGTGC.............................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................CAACAGCA-A---C--------------------------------------------AAC------------------------------AACAAAA...............................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................CGT--GCGTGCGTGCGTGCG................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000000000000000000000000000100
....................................................................................................................................................................................................................................................................................ACAACAACAACAGCA-A---C--------------------------------------------AAC------------------------------AA....................................................................................................................................................................................................................22200.051000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................CGTGCGTGCGTGCGTGCG............................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000000000000000000000000000100
..........................................................................................................................................ACCCACACACACACACACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000010000000000000000000000000000000000000
.................................................................................................................................................................................................GTGCGTGCGT--GCGTGCGTGCGTG..................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................GT--GCGTGCGTGCGTGCGTGCGTG..........................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................ACAACAGCA-A---C--------------------------------------------AAC------------------------------AACAA.................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................GTGTGCGTGCGT--GCGTGCGT.......................................................................................................................................................................................................................................................................................................................................................................................20200.051000001000000000000000000000000000000000000000000000000000000000
droMoj3
ATAAA-CA------------------------GAA---AAGAAA---------------------ATTCGGAAAA---TTT-TCAAACTTACCTGTAAGTTAAATGCGACA--CAC----ACCC----------ACATACACG----------CACACACACAGGCA---------------C--ATT--TCGCTGTGTGTGTGTGTGCA----------------TGTGTGTGCAAACTTTTCTAATTAAGTAAGTTTTAAGCAAATTGTGTAATACAACAGCAACAAA-AA--------------------------------------------CA-ACA-----------------------------------AGATATCAAATACTA-T-ATAAAAGCAAATTAAATCATGCGAAATTTATAATA----ACAAAAACAAGAAA-----TTATATAAATATATATAT---AT----------------ATATATAAATATATAAATAGTGACAAA----------------------------AAAAAAACAATATAAGGGCGGGCAAAATTAAGCAAATTAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................ACCC----------ACATACACG----------CACACACACAGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...........................................A---------------------ATTCGGAAAA---TTT-TCAAACTTACCTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
................................................................................................................................................................ACAGGCA---------------C--ATT--TCGCTGTGTGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..AAA-CA------------------------GAA---AAGAAA---------------------ATTCGGAAAA---T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
............................................................................................................................................ACG----------CACACACACAGGCA---------------C--ATT--TCGCTGT.......................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.........................................................................................TACCTGTAAGTTAAATGCGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.........................................................................................................................................................................................................................................GCAAACTTTTCTAATTAAGTAA.............................................................................................................................................................................................................................................................................................................................................2211.001100000
................................................................................T-TCAAACTTACCTGTAAGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.............................................................................................................................................................................................................................................................................GTGTAATACAACAGCAACAA...........................................................................................................................................................................................................................................................................................................2011.001100000
...............................................................................................................................................................................................................................................................................................AAA-AA--------------------------------------------CA-ACA-----------------------------------AGATATCAAATACT....................................................................................................................................................................................................2411.001100000
.........................................................................................................................CCC----------ACATACACG----------CACACACAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2150.201100000
..............................................................................................................A--CAC----ACCC----------ACATACACG----------C..................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.201100000
..........................................................................................................................CC----------ACATACACG----------CACACACAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2080.131000010
......................................................................................................................................................................................................TGTGTGTGTGCA----------------TGTGTGTGCA................................................................................................................................................................................................................................................................................................................................................................2290.111010000
droGri2
AGAAA-AA--GAAA----------------CAAAAA------AA-----A-AA-ACAAAATAAAAATTGGGAAAA---AAT-TCGAACTTACCTGTAAGTTAA-ACGTG--TCCAC----------------ACA--C----T----------TACACACACACACA-C-------------T--GTA--TGTGTTTGTGTGT--GTGTT----------------TGTGTGTGCCAACTTTTCTAATTAAGTAAGTTTTAAGCGAATTGTGTAATACAACAACAACAACA-A---C--------------------------------------------AACATCAAAACAAAAACAAAAACAAAAACCGAGA---AAATATCAAATACTA-T-ATAAAACAA-AGTAAATCATGCGAAATTTAACATAAAAAACAAAAACAAAAATTAATAGTATAT------ATAAA-AATATAT--------------ATATATAAATATATAAATAGTAA------------------------------AACAAAAACCAATATAAGGGCGGGCAAAATTAAGCAAATTAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................G--TCCAC----------------ACA--C----T----------TACACACACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
.................................................................ATTGGGAAAA---AAT-TCGAACTTACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101
.....................................................................................................................................................................................................................................................................AGCGAATTGTGTAATACAACAACAACA............................................................................................................................................................................................................................................................................................................2711.00101
.........................................................................................................................................................................................................................................................AAGTAAGTTTTAAGCGAATTGTG............................................................................................................................................................................................................................................................................................................................2311.00110
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACCAATATAAGGGCGGGCAAA..............2411.00101
..................................................................................................................................................................................................................................................................................................................................................................AAACAAAAACAAAAACCGAG......................................................................................................................................................................................................................2011.00110
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATAAATAGTAA------------------------------AACAAAAACCA...............................2611.00110
..................................................................................................................................................................................................TTTGTGTGT--GTGTT----------------TGTGTGTGCCAAC.............................................................................................................................................................................................................................................................................................................................................................2711.00101
........................................................................................................................................................................C-------------T--GTA--TGTGTTTGTGTGT--GTGTT----------------TGT.......................................................................................................................................................................................................................................................................................................................................................................2611.00101
...................................................................................................................................................................................................................................GTGTGTGCCAACTTTTCT.......................................................................................................................................................................................................................................................................................................................................................1811.00110
..............................................................................................................................................................................................TGTGTTTGTGTGT--GTGTT----------------TGTGTGTGCC................................................................................................................................................................................................................................................................................................................................................................2840.25101
.....................................................................................................................................................................................................GTGTGT--GTGTT----------------TGTGTGTGCCA...............................................................................................................................................................................................................................................................................................................................................................2250.20101
......................................................................................................................................................................................................TGTGT--GTGTT----------------TGTGTGTGCCA...............................................................................................................................................................................................................................................................................................................................................................2150.20101
....................................................................................................................................................................................................TGTGTGT--GTGTT----------------TGTGTGTGCC................................................................................................................................................................................................................................................................................................................................................................22130.08101
.....................................................................................................................................................................................................GTGTGT--GTGTT----------------TGTGTGTGCC................................................................................................................................................................................................................................................................................................................................................................21140.07101

Generated: 05/18/2015 at 03:02 PM