ID:

dsi_5285

Coordinate:

3r:10715995-10716144 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-18.4	-18.4	-18.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CCACTGGCACTCACCGAGGGCGCCCAGTTCATACAGAGCGACCCCGCGAGGTGCGCCAAATACTAAACCACAAATTAACTACAGTGAAATACGCTTGCACTGCCACAGAAATACAGCATGACTTTGCGCTTGGCCCATGGCATTTAAATATCATTGCAGAATTTTTAAGAATTTATATTGAGCTCGGAAATCAGATGGGTTCAGTGTTGTAGAACAAGAATTATAACCCTATCCTAGGTTCTTTTTATAT ************************************************.....((((......................(((((...........))))).............(((......)))..))))(((((...((((.....(((.....((((((....))))))....)))......))))...))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M053 female body	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR902008 ovaries
...........................................................................................................................................................................................................GTGTTGTAGAACAAGAATTATAACC......................	25	0	1	1.00	1	1	0	0	0	0	0	0	0
..............................................................................................................ATACAGCATGACTTTGCGCTTGGCCCAT................................................................................................................	28	0	1	1.00	1	0	1	0	0	0	0	0	0
............................................................................................................................TGCGATTGGCTGATGGCATTTA........................................................................................................	22	3	2	0.50	1	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................CAGTCTTGTAGAACAA.................................	16	1	3	0.33	1	0	0	0	1	0	0	0	0
...........................................................................................................................TTGCGATTGGCTGATGGCATT..........................................................................................................	21	3	10	0.30	3	0	0	1	0	1	0	0	1
............................................................................................................................TGCGATTGGCTGATGGCATTT.........................................................................................................	21	3	12	0.25	3	0	0	3	0	0	0	0	0
....................................TGCGACCCCGCGAGG.......................................................................................................................................................................................................	15	1	6	0.17	1	0	0	0	0	0	0	1	0
................................ACCGAGCGACGCCGCG..........................................................................................................................................................................................................	16	2	18	0.11	2	0	0	0	0	2	0	0	0
..................................................................................................................................................................................................ATGGGTTGAGGGTTGTA.......................................	17	2	11	0.09	1	0	0	0	0	0	1	0	0
...........................................................................................................................TTGCGATTGGCTGATGGCAT...........................................................................................................	20	3	17	0.06	1	0	0	1	0	0	0	0	0
.......................CCAGTTCATACAAAG....................................................................................................................................................................................................................	15	1	18	0.06	1	0	0	0	0	0	1	0	0
..........................................................................................................AGAAATTCAGCAGGACT...............................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	1	0	0
............................................................................................................................................................................................................TGTAGGAGAACAAGAAT.............................	17	2	20	0.05	1	0	0	0	1	0	0	0	0

Anti-sense strand reads

GGTGACCGTGAGTGGCTCCCGCGGGTCAAGTATGTCTCGCTGGGGCGCTCCACGCGGTTTATGATTTGGTGTTTAATTGATGTCACTTTATGCGAACGTGACGGTGTCTTTATGTCGTACTGAAACGCGAACCGGGTACCGTAAATTTATAGTAACGTCTTAAAAATTCTTAAATATAACTCGAGCCTTTAGTCTACCCAAGTCACAACATCTTGTTCTTAATATTGGGATAGGATCCAAGAAAAATATA ************************************************.....((((......................(((((...........))))).............(((......)))..))))(((((...((((.....(((.....((((((....))))))....)))......))))...))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	GSM343915 embryo	M023 head	M024 male body
.....................................................................................................................................................................................................CCAAGTCACAACATCTTGTTC................................	21	0	1	1.00	1	1	0	0	0	0	0
.............................................AGCTCCACGCCGTTTATGA..........................................................................................................................................................................................	19	2	2	0.50	1	0	1	0	0	0	0
..................................TCTCGCTGGTGCGCGCCACT....................................................................................................................................................................................................	20	3	4	0.25	1	0	0	0	1	0	0
.................................................................................................................................................................................................................ATATTGGTCTTAATATTGG......................	19	2	5	0.20	1	0	0	1	0	0	0
.................CCCGGGGATCAAGTTTGTC......................................................................................................................................................................................................................	19	3	9	0.11	1	0	0	0	0	1	0
.................................................................................................................................AACCGGGTACCATATA.........................................................................................................	16	2	20	0.10	2	0	0	2	0	0	0
..................................................CTCGCGGCTTATGATT........................................................................................................................................................................................	16	2	20	0.05	1	0	1	0	0	0	0
.................CCCGGGGGTCAGGTTTGTC......................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1

Generated: 04/24/2015 at 10:47 AM